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Supplemental Material for Tabima et al., 2020

dataset
posted on 29.07.2020 by Javier Tabima, Ian A. Trautman, Ying Chang, Yan Wang, Stephen J. Mondo, Alan Kuo, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora
Figure S1 contains maximum likelihood reconstruction of NRPS-A domains. Figure S2 contains graphical representation of cluster 5 from B. meristosporus CBS 931.73. Figure S3 contains phylogenetic sources and abundance of KS domains. Figure S4 contains maximum likelihood reconstruction of PKS KS domains. Figure S5 contains presence and absence of domains characteristic of PKS core gene models in non-zygomycete fungal species. Figure S6 contains presence and absence of domains characteristic of PKS core gene models in zygomycete fungal species. Figure S7 contains phylogenetic sources and abundance of terpene cyclases. Figure S8 includes the proof of concept for HGT assays. Figure S9 includes intron number comparisons for HGT genes. Figure S10 includes a PCA 5-mer analysis for HGT genes. Figure S11 includes a PCA for codon usage analysis for HGT genes. Figure S12 includes siderophore activity assays. Table S1 includes all Mucoromycota and Zoopagomycota isolates used in the manuscript. Table S2 is a summary of secondary metabolite genes predicted for Basidiobolus species. Table S3 includes the isolates of Dikarya used for the terpene cyclase assay. Table S4 includes the summary of hits of HGT genes against NBCI taxonomy. Table S5 is a summary of gene annotations from HGT candidates.

History

Article title

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus

Manuscript #

G3/2020/401516

Article DOI

10.1534/g3.120.401516

Licence

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