Supplemental Material for Holmes, 2020
Version 2 2020-10-26, 15:02Version 2 2020-10-26, 15:02
Version 1 2020-10-05, 13:32Version 1 2020-10-05, 13:32
dataset
posted on 2020-10-26, 15:02 authored by Ian Holmesinfo.txt - Overview file
fsm/general.json - Machine Boss JSON file describing model F in the paper (Figure 2a)
fsm/asym.json - Machine Boss JSON file describing model G in the paper (Figure 2b)
fsm/general-asym.json - Machine Boss JSON file describing model FG in the paper (Figure 2c)
fsm/Makefile - Makefile to build Mathematica, LaTeX, and GraphViz representations of transition matrix for FG
fsm/json2matrix.js - Short JavaScript program to eliminate redundant states from FG
general.nb - Mathematica notebook implementing calculations described in the paper
History
Article title
A Model of Indel Evolution by Finite-State, Continuous-Time MachinesManuscript #
GENETICS/2020/303630Article DOI
10.1534/genetics.120.303630Usage metrics
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