"wheat_id" "markerID" "chr" "pos" "REF" "ALT_227" "ALT_228" "ALT" "markSNPtype" "Annotation" "Annotation_Impact" "Feature_Type" "triplClass" "start" "end" "geneLength" "count" "nSNPper100b" "snp" "IBD.start" "IBD.end" "IBD.length" "IBDorNOT" expression TraesCS1A01G245000 chr1A_432983197 chr1A 432983197 G G A A 4 synonymous_variant LOW transcript unique_Triplet 432973525 432987303 13779 1 0.00725742071267871 RFvsST 399243176 459187036 59943861 yes 379.889060357561 TraesCS1A01G255400 chr1A_447642048 chr1A 447642048 T T C C 4 synonymous_variant LOW transcript unique_Triplet 447641144 447644004 2861 1 0.034952813701503 RFvsST 399243176 459187036 59943861 yes 282.594579850739 TraesCS1D01G069500 chr1D_50206767 chr1D 50206767 G T G T 3 synonymous_variant LOW transcript unique_Triplet 50205687 50207315 1629 1 0.0613873542050338 RFvsST 41596782 125068364 83471583 yes 738.275716085643 TraesCS1D01G111900 chr1D_107218069 chr1D 107218069 T C T C 3 missense_variant MODERATE transcript unique_Triplet 107216723 107220303 3581 1 0.0279251605696733 RFvsST 41596782 125068364 83471583 yes 122.19379899086 TraesCS1D01G123100 chr1D_124342308 chr1D 124342308 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 124312466 124343848 31383 1 0.0031864385176688 RFvsST 41596782 125068364 83471583 yes 60.7883908571248 TraesCS1D01G156000 chr1D_219727242 chr1D 219727242 T C T C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 219723782 219730973 7192 1 0.0139043381535039 RFvsST 218898905 326285746 107386842 yes 475.278744026563 TraesCS1D01G161200 chr1D_228071142 chr1D 228071142 G G A A 4 missense_variant MODERATE transcript unique_Triplet 228068741 228072567 3827 1 0.0261301280376274 RFvsST 218898905 326285746 107386842 yes 79.4717844659541 TraesCS1D01G192900 chr1D_269354136 chr1D 269354136 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 269353969 269373569 19601 1 0.00510178052140197 RFvsST 218898905 326285746 107386842 yes 538.127671057181 TraesCS1D01G196900 chr1D_277094135 chr1D 277094135 G A G A 3 synonymous_variant LOW transcript unique_Triplet 277092891 277094978 2088 1 0.0478927203065134 RFvsST 218898905 326285746 107386842 yes 375.884548159049 TraesCS1D01G216700 chr1D_302390226 chr1D 302390226 T T C C 4 missense_variant MODERATE transcript unique_Triplet 302386048 302390446 4399 1 0.0227324391907252 RFvsST 218898905 326285746 107386842 yes 104.43408919642 TraesCS1D01G218100 chr1D_304337257 chr1D 304337257 G A G A 3 missense_variant MODERATE transcript unique_Triplet 304334334 304337584 3251 1 0.0307597662257767 RFvsST 218898905 326285746 107386842 yes 163.846101564849 TraesCS1D01G287600 chr1D_386123843 chr1D 386123843 G A G A 3 missense_variant MODERATE transcript unique_Triplet 386119964 386127609 7646 1 0.0130787339785509 RFvsST 371658084 432406097 60748014 yes 355.686474171822 TraesCS1D01G288700 chr1D_386950097 chr1D 386950097 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 386949278 386950547 1270 1 0.078740157480315 RFvsST 371658084 432406097 60748014 yes 420.5881447094 TraesCS1D01G338100 chr1D_427482353 chr1D 427482353 G C G C 3 intron_variant MODIFIER transcript non_Triplet 427478293 427486152 7860 1 0.0127226463104326 RFvsST 371658084 432406097 60748014 yes 3049.92869393521 TraesCS1D01G342200 chr1D_431958253 chr1D 431958253 C C T T 4 synonymous_variant LOW transcript unique_Triplet 431955274 431958452 3179 1 0.0314564328405159 RFvsST 371658084 432406097 60748014 yes 40.8177059733976 TraesCS1D01G375500 chr1D_452430208 chr1D 452430208 G C G C 3 missense_variant MODERATE transcript non_Triplet 452427596 452430457 2862 1 0.0349406009783368 RFvsST 436186956 465519870 29332915 yes 23.1501441100862 TraesCS2A01G168500 chr2A_121591609 chr2A 121591609 G G C C 4 missense_variant MODERATE transcript unique_Triplet 121590321 121594797 4477 1 0.0223363859727496 RFvsST 102340216 212642747 110302532 yes 174.231460703244 TraesCS2A01G220600 chr2A_209208792 chr2A 209208792 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 209206069 209208698 2630 1 0.0380228136882129 RFvsST 102340216 212642747 110302532 yes 62.4405850297399 TraesCS2A01G221100 chr2A_209582926 chr2A 209582926 C A C A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 209582729 209583874 1146 1 0.087260034904014 RFvsST 102340216 212642747 110302532 yes 261.183939738675 TraesCS2B01G456000 chr2B_650485729 chr2B 650485729 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 650482338 650485786 3449 1 0.0289939112786315 RFvsST 650399689 772819717 122420029 yes 74.8125803460636 TraesCS2B01G485100 chr2B_682217702 chr2B 682217702 A A G G 4 missense_variant MODERATE transcript non_Triplet 682217665 682219365 1701 1 0.0587889476778366 RFvsST 650399689 772819717 122420029 yes 117.695596199482 TraesCS2B01G526200 chr2B_720470199 chr2B 720470199 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 720473416 720485785 12370 1 0.00808407437348424 RFvsST 650399689 772819717 122420029 yes 351.893831587257 TraesCS2D01G198300 chr2D_146305543 chr2D 146305543 A A G G 4 missense_variant MODERATE transcript unique_Triplet 146300832 146308440 7609 1 0.0131423314495992 RFvsST 140304767 260360860 120056094 yes 310.319685904933 TraesCS2D01G201300 chr2D_152873614 chr2D 152873614 G G T T 4 missense_variant MODERATE transcript unique_Triplet 152867028 152873731 6704 1 0.0149164677804296 RFvsST 140304767 260360860 120056094 yes 107.971176360531 TraesCS2D01G226800 chr2D_194806686 chr2D 194806686 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 194806828 194807382 555 1 0.18018018018018 RFvsST 140304767 260360860 120056094 yes 124.920177749378 TraesCS2D01G234700 chr2D_218048668 chr2D 218048668 G A G A 3 missense_variant MODERATE transcript non_Triplet 218020099 218048879 28781 1 0.00347451443660748 RFvsST 140304767 260360860 120056094 yes 158.774214672616 TraesCS2D01G301800 chr2D_385166132 chr2D 385166132 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 385164077 385165634 1558 1 0.0641848523748395 RFvsST 382179811 524144774 141964964 yes 169.904227814233 TraesCS2D01G307800 chr2D_394787576 chr2D 394787576 G G A A 4 missense_variant MODERATE transcript non_Triplet 394787455 394789048 1594 1 0.0627352572145546 RFvsST 382179811 524144774 141964964 yes 130.628762005502 TraesCS2D01G342900 chr2D_439438303 chr2D 439438303 G G A A 4 synonymous_variant LOW transcript unique_Triplet 439437193 439438939 1747 1 0.0572409845449342 RFvsST 382179811 524144774 141964964 yes 169.279303821092 TraesCS2D01G398800 chr2D_511944109 chr2D 511944109 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 511921632 511943421 21790 1 0.00458926112895824 RFvsST 382179811 524144774 141964964 yes 33.4794125866007 TraesCS2D01G399500 chr2D_512685782 chr2D 512685782 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 512685772 512687789 2018 1 0.0495540138751239 RFvsST 382179811 524144774 141964964 yes 89.6293752416223 TraesCS2D01G479400 chr2D_580193887 chr2D 580193887 C T C T 3 missense_variant MODERATE transcript unique_Triplet 580192102 580194804 2703 1 0.0369959304476508 RFvsST 571176918 606648461 35471544 yes 294.162607249197 TraesCS2D01G501400 chr2D_595545981 chr2D 595545981 A A G G 4 missense_variant MODERATE transcript non_Triplet 595545004 595547008 2005 1 0.0498753117206982 RFvsST 571176918 606648461 35471544 yes 109.55631472718 TraesCS3A01G120300 chr3A_94115051 chr3A 94115051 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 94115651 94116058 408 1 0.245098039215686 RFvsST 60447057 131423672 70976616 yes 239.590098293879 TraesCS3A01G143600 chr3A_125092370 chr3A 125092370 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 125092395 125095179 2785 1 0.0359066427289048 RFvsST 60447057 131423672 70976616 yes 178.060732826183 TraesCS3D01G251700 chr3D_352391497 chr3D 352391497 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 352387330 352391487 4158 1 0.0240500240500241 RFvsST 324386327 410666815 86280489 yes 40.3587544631715 TraesCS3D01G258800 chr3D_360696357 chr3D 360696357 G G A A 4 missense_variant MODERATE transcript unique_Triplet 360695492 360699820 4329 1 0.0231000231000231 RFvsST 324386327 410666815 86280489 yes 16.7565490901961 TraesCS3D01G286700 chr3D_395647374 chr3D 395647374 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 395644094 395644333 240 1 0.416666666666667 RFvsST 324386327 410666815 86280489 yes 42.1764558078775 TraesCS3D01G344700 chr3D_456592918 chr3D 456592918 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 456593209 456596272 3064 1 0.0326370757180157 RFvsST 454508463 523833908 69325446 yes 310.592024524023 TraesCS3D01G353100 chr3D_463805048 chr3D 463805048 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 463805104 463806192 1089 1 0.0918273645546373 RFvsST 454508463 523833908 69325446 yes 90.7596579499092 TraesCS3D01G380800 chr3D_496945405 chr3D 496945405 T T C C 4 missense_variant MODERATE transcript unique_Triplet 496943748 496946733 2986 1 0.0334896182183523 RFvsST 454508463 523833908 69325446 yes 239.986411645665 TraesCS3D01G393400 chr3D_508398234 chr3D 508398234 C T C T 3 missense_variant MODERATE transcript unique_Triplet 508398058 508402384 4327 1 0.0231107002542177 RFvsST 454508463 523833908 69325446 yes 60.384272955418 TraesCS4A01G237500 chr4A_546297225 chr4A 546297225 G A G A 3 synonymous_variant LOW transcript unique_Triplet 546296550 546298853 2304 1 0.0434027777777778 RFvsST 546296550 603726600 57430051 yes 1628.48605260722 TraesCS4A01G240000 chr4A_549799824 chr4A 549799824 A G A G 3 synonymous_variant LOW transcript unique_Triplet 549799338 549800138 801 1 0.124843945068664 RFvsST 546296550 603726600 57430051 yes 96.9537888034621 TraesCS4A01G307900 chr4A_601364431 chr4A 601364431 T T C C 4 missense_variant MODERATE transcript unique_Triplet 601364149 601367728 3580 1 0.0279329608938547 RFvsST 546296550 603726600 57430051 yes 339.997114294944 TraesCS4A01G310700 chr4A_603373430 chr4A 603373430 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603377077 603380232 3156 1 0.0316856780735108 RFvsST 546296550 603726600 57430051 yes 48.950145184504 TraesCS4D01G024400 chr4D_10765998 chr4D 10765998 G G A A 4 missense_variant MODERATE transcript non_Triplet 10765400 10767639 2240 1 0.0446428571428571 RFvsST 3856251 28481653 24625403 yes 93.8383921767717 TraesCS4D01G040400 chr4D_18781272 chr4D 18781272 G A G A 3 missense_variant MODERATE transcript unique_Triplet 18781062 18782933 1872 1 0.0534188034188034 RFvsST 3856251 28481653 24625403 yes 827.279374397631 TraesCS4D01G182200 chr4D_318496479 chr4D 318496479 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 318490025 318492055 2031 1 0.0492368291482029 RFvsST 297928472 348295322 50366851 yes 121.619956335012 TraesCS5A01G060400 chr5A_63373520 chr5A 63373520 G A G A 3 stop_gained HIGH transcript unique_Triplet 63372648 63381379 8732 1 0.0114521300961979 RFvsST 30412998 174261739 143848742 yes 275.109575604716 TraesCS5A01G063800 chr5A_69101202 chr5A 69101202 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69101385 69104104 2720 1 0.0367647058823529 RFvsST 30412998 174261739 143848742 yes 78.00923358064 TraesCS5A01G093900 chr5A_130129398 chr5A 130129398 C A C A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 130127180 130134864 7685 1 0.0130123617436565 RFvsST 30412998 174261739 143848742 yes 69.0944092531718 TraesCS5A01G101900 chr5A_151255183 chr5A 151255183 C C G G 4 missense_variant MODERATE transcript non_Triplet 151252518 151258773 6256 1 0.0159846547314578 RFvsST 30412998 174261739 143848742 yes 89.7217627750125 TraesCS5A01G124800 chr5A_274782257 chr5A 274782257 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 274781275 274788592 7318 1 0.0136649357748019 RFvsST 195628886 343958639 148329754 yes 15.589451099867 TraesCS5A01G127300 chr5A_283111118 chr5A 283111118 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 283111110 283111583 474 1 0.210970464135021 RFvsST 195628886 343958639 148329754 yes 58.1986342817348 TraesCS5A01G152600 chr5A_329828930 chr5A 329828930 C C A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 329822643 329829072 6430 1 0.015552099533437 RFvsST 195628886 343958639 148329754 yes 981.010413119719 TraesCS5A01G153500 chr5A_330974709 chr5A 330974709 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 330967720 330978384 10665 1 0.0093764650726676 RFvsST 195628886 343958639 148329754 yes 637.357461273793 TraesCS5A01G387100 chr5A_584514869 chr5A 584514869 T C T C 3 synonymous_variant LOW transcript unique_Triplet 584513753 584516915 3163 2 0.0632311097059753 RFvsST 584507906 656671012 72163107 yes 151.550714825241 TraesCS5A01G387100 chr5A_584514816 chr5A 584514816 G A G A 3 missense_variant MODERATE transcript unique_Triplet 584513753 584516915 3163 2 0.0632311097059753 RFvsST 584507906 656671012 72163107 yes 151.550714825241 TraesCS5A01G478800 chr5A_651859039 chr5A 651859039 G G A A 4 missense_variant MODERATE transcript non_Triplet 651858813 651859458 646 1 0.154798761609907 RFvsST 584507906 656671012 72163107 yes 30.1985387856347 TraesCS5B01G084200 chr5B_106812414 chr5B 106812414 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 106809259 106810508 1250 1 0.08 RFvsST 102906172 233234032 130327861 yes 43.9511293452421 TraesCS5B01G104500 chr5B_139340026 chr5B 139340026 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 139340976 139351293 10318 1 0.00969180073657686 RFvsST 102906172 233234032 130327861 yes 75.8830286008163 TraesCS5B01G115500 chr5B_192863644 chr5B 192863644 G G C C 4 intron_variant MODIFIER transcript non_Triplet 192862026 192876415 14390 1 0.00694927032661571 RFvsST 102906172 233234032 130327861 yes 388.207497406953 TraesCS5B01G471500 chr5B_644875825 chr5B 644875825 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 644873166 644875553 2388 1 0.0418760469011725 RFvsST 596904204 656046465 59142262 yes 185.555109020449 TraesCS5D01G043200 chr5D_42907038 chr5D 42907038 G G T T 4 missense_variant MODERATE transcript non_Triplet 42904892 42910642 5751 1 0.0173882802990784 RFvsST 23296781 68693663 45396883 yes 49.8764805395989 TraesCS5D01G069400 chr5D_66759543 chr5D 66759543 T G T G 3 missense_variant MODERATE transcript non_Triplet 66759523 66764638 5116 1 0.019546520719312 RFvsST 23296781 68693663 45396883 yes No_match TraesCS5D01G115500 chr5D_135239832 chr5D 135239832 G C G C 3 missense_variant MODERATE transcript unique_Triplet 135239528 135240083 556 1 0.179856115107914 RFvsST 111599125 240497919 128898795 yes 35.8196731437708 TraesCS5D01G118000 chr5D_154534992 chr5D 154534992 A C A C 3 synonymous_variant LOW transcript non_Triplet 154524415 154539554 15140 1 0.00660501981505944 RFvsST 111599125 240497919 128898795 yes 3833.85295440474 TraesCS5D01G139000 chr5D_221312165 chr5D 221312165 A G A G 3 synonymous_variant LOW transcript unique_Triplet 221311074 221314878 3805 1 0.026281208935611 RFvsST 111599125 240497919 128898795 yes 66.7257525686455 TraesCS5D01G145500 chr5D_232140379 chr5D 232140379 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 232138265 232141963 3699 1 0.0270343336036767 RFvsST 111599125 240497919 128898795 yes 142.130653750492 TraesCS5D01G189900 chr5D_292161055 chr5D 292161055 A T A T 3 missense_variant MODERATE transcript unique_Triplet 292142076 292161171 19096 1 0.00523669878508588 RFvsST 289078326 375452424 86374099 yes 236.322583581754 TraesCS5D01G190400 chr5D_292714404 chr5D 292714404 G T G T 3 synonymous_variant LOW transcript unique_Triplet 292714336 292714821 486 1 0.205761316872428 RFvsST 289078326 375452424 86374099 yes 33.5020158910454 TraesCS5D01G225100 chr5D_332582262 chr5D 332582262 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 332581519 332582484 966 1 0.10351966873706 RFvsST 289078326 375452424 86374099 yes 78.5089505892375 TraesCS5D01G256100 chr5D_362401881 chr5D 362401881 A G A G 3 missense_variant MODERATE transcript unique_Triplet 362398503 362402738 4236 1 0.0236071765816808 RFvsST 289078326 375452424 86374099 yes 929.206229873329 TraesCS5D01G261200 chr5D_367590421 chr5D 367590421 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 367587550 367590307 2758 1 0.0362581580855693 RFvsST 289078326 375452424 86374099 yes 20.6969103431086 TraesCS5D01G297200 chr5D_394101755 chr5D 394101755 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 394102007 394106889 4883 1 0.0204792135981978 RFvsST 390360068 446759394 56399327 yes 421.283787116053 TraesCS5D01G328400 chr5D_420919311 chr5D 420919311 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 420919022 420922532 3511 1 0.0284819139846198 RFvsST 390360068 446759394 56399327 yes 111.74088499878 TraesCS5D01G371100 chr5D_445645170 chr5D 445645170 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 445628709 445641828 13120 1 0.00762195121951219 RFvsST 390360068 446759394 56399327 yes 391.472442273449 TraesCS6D01G187100 chr6D_249989663 chr6D 249989663 T T G G 4 missense_variant MODERATE transcript unique_Triplet 249985161 249991308 6148 1 0.0162654521795706 RFvsST 200481719 446882212 246400494 yes 17.1802448956182 TraesCS6D01G316100 chr6D_424951300 chr6D 424951300 G A G A 3 synonymous_variant LOW transcript non_Triplet 424950072 424952573 2502 1 0.0399680255795364 RFvsST 200481719 446882212 246400494 yes No_match TraesCS6D01G348700 chr6D_446614833 chr6D 446614833 C C T T 4 missense_variant MODERATE transcript unique_Triplet 446610610 446614948 4339 1 0.0230467849734962 RFvsST 200481719 446882212 246400494 yes 279.464780111127 TraesCS7A01G188000 chr7A_143853783 chr7A 143853783 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 143849789 143851835 2047 1 0.0488519785051295 RFvsST 127834468 184169575 56335108 yes 96.855171254999 TraesCS7A01G215900 chr7A_182384847 chr7A 182384847 C C G G 4 synonymous_variant LOW transcript unique_Triplet 182384521 182385975 1455 1 0.0687285223367698 RFvsST 127834468 184169575 56335108 yes 268.487425881259 TraesCS7B01G077600 chr7B_87137825 chr7B 87137825 A C A C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 87137883 87144041 6159 1 0.0162364020133139 RFvsST 70520462 342992328 272471867 yes 508.601326385918 TraesCS7B01G181900 chr7B_278930462 chr7B 278930462 G G A A 4 synonymous_variant LOW transcript non_Triplet 278930324 278937862 7539 1 0.0132643586682584 RFvsST 70520462 342992328 272471867 yes 213.91220283132 TraesCS7B01G188200 chr7B_318841701 chr7B 318841701 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 318840814 318841332 519 1 0.192678227360308 RFvsST 70520462 342992328 272471867 yes 14.4445333759031 TraesCS7D01G243800 chr7D_210395697 chr7D 210395697 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 210392775 210399479 6705 1 0.0149142431021626 RFvsST 199626937 392821607 193194671 yes 271.91486186492 TraesCS7D01G260200 chr7D_235982986 chr7D 235982986 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 235980471 235985690 5220 1 0.0191570881226054 RFvsST 199626937 392821607 193194671 yes 110.764439771427 TraesCS7D01G279000 chr7D_269527906 chr7D 269527906 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 269528781 269531675 2895 1 0.0345423143350604 RFvsST 199626937 392821607 193194671 yes 115.917176299172 TraesCS7D01G286800 chr7D_310334366 chr7D 310334366 C C T T 4 missense_variant MODERATE transcript non_Triplet 310331343 310335627 4285 1 0.0233372228704784 RFvsST 199626937 392821607 193194671 yes 182.225746834707 TraesCS7D01G294500 chr7D_368010382 chr7D 368010382 G G T T 4 missense_variant MODERATE transcript unique_Triplet 368009563 368012745 3183 1 0.0314169022934339 RFvsST 199626937 392821607 193194671 yes 196.100686205294 TraesCS7D01G326900 chr7D_417617754 chr7D 417617754 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 417611958 417615531 3574 1 0.0279798545047566 RFvsST 412234878 499526346 87291469 yes 61.7277828178594 TraesCS7D01G338700 chr7D_432495818 chr7D 432495818 C A C A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 432490723 432495835 5113 1 0.0195579894386857 RFvsST 412234878 499526346 87291469 yes 283.779513659958 TraesCS7D01G381500 chr7D_495705846 chr7D 495705846 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 495703878 495704552 675 1 0.148148148148148 RFvsST 412234878 499526346 87291469 yes 41.027149974862 TraesCS7D01G381600 chr7D_495706344 chr7D 495706344 C T C T 3 missense_variant MODERATE transcript unique_Triplet 495706046 495706570 525 1 0.19047619047619 RFvsST 412234878 499526346 87291469 yes 928.155558565608 TraesCS1A01G020500 chr1A_10069658 chr1A 10069658 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10067063 10069144 2082 2 0.0960614793467819 RFvsST 58508 455022881 454964374 no 1133.46875538359 TraesCS1A01G020500 chr1A_10069789 chr1A 10069789 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10067063 10069144 2082 2 0.0960614793467819 RFvsST 58508 455022881 454964374 no 1133.46875538359 TraesCS1A01G020600 chr1A_10072022 chr1A 10072022 C T C T 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10070434 chr1A 10070434 A G A G 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10071112 chr1A 10071112 A T A T 3 missense_variant MODERATE transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10069891 chr1A 10069891 A C A C 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10072118 chr1A 10072118 G T G T 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10070042 chr1A 10070042 T C T C 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020600 chr1A_10070075 chr1A 10070075 T C T C 3 synonymous_variant LOW transcript unique_Triplet 10069852 10072312 2461 7 0.284437220642015 RFvsST 58508 455022881 454964374 no 62.9213375004575 TraesCS1A01G020900 chr1A_10132967 chr1A 10132967 G C G C 3 missense_variant MODERATE transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G020900 chr1A_10132664 chr1A 10132664 C T C T 3 synonymous_variant LOW transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G020900 chr1A_10132973 chr1A 10132973 C T C T 3 synonymous_variant LOW transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G020900 chr1A_10132642 chr1A 10132642 G A G A 3 missense_variant MODERATE transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G020900 chr1A_10132661 chr1A 10132661 T C T C 3 synonymous_variant LOW transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G020900 chr1A_10132856 chr1A 10132856 G A G A 3 synonymous_variant LOW transcript non_Triplet 10132632 10133075 444 6 1.35135135135135 RFvsST 58508 455022881 454964374 no 28.4811445277901 TraesCS1A01G024500 chr1A_12093366 chr1A 12093366 C T C T 3 synonymous_variant LOW transcript non_Triplet 12089718 12093423 3706 1 0.0269832703723691 RFvsST 58508 455022881 454964374 no 33.0486917450136 TraesCS1A01G024600 chr1A_12096540 chr1A 12096540 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12098742 chr1A 12098742 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12096440 chr1A 12096440 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12098848 chr1A 12098848 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12098032 chr1A 12098032 G A G A 3 synonymous_variant LOW transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12097540 chr1A 12097540 C T C T 3 synonymous_variant LOW transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12093436 chr1A 12093436 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024600 chr1A_12097514 chr1A 12097514 G C G C 3 missense_variant MODERATE transcript unique_Triplet 12096542 12098303 1762 8 0.454029511918275 RFvsST 58508 455022881 454964374 no 30.3010391941089 TraesCS1A01G024700 chr1A_12102346 chr1A 12102346 G A G A 3 synonymous_variant LOW transcript unique_Triplet 12098953 12103802 4850 5 0.103092783505155 RFvsST 58508 455022881 454964374 no 111.466653961359 TraesCS1A01G024700 chr1A_12102950 chr1A 12102950 A G A G 3 missense_variant MODERATE transcript unique_Triplet 12098953 12103802 4850 5 0.103092783505155 RFvsST 58508 455022881 454964374 no 111.466653961359 TraesCS1A01G024700 chr1A_12103279 chr1A 12103279 T G T G 3 missense_variant MODERATE transcript unique_Triplet 12098953 12103802 4850 5 0.103092783505155 RFvsST 58508 455022881 454964374 no 111.466653961359 TraesCS1A01G024700 chr1A_12103257 chr1A 12103257 G A G A 3 synonymous_variant LOW transcript unique_Triplet 12098953 12103802 4850 5 0.103092783505155 RFvsST 58508 455022881 454964374 no 111.466653961359 TraesCS1A01G024700 chr1A_12103106 chr1A 12103106 C A C A 3 missense_variant MODERATE transcript unique_Triplet 12098953 12103802 4850 5 0.103092783505155 RFvsST 58508 455022881 454964374 no 111.466653961359 TraesCS1A01G025200 chr1A_12160451 chr1A 12160451 A G A G 3 splice_region_variant LOW transcript unique_Triplet 12157112 12161874 4763 1 0.0209951711106445 RFvsST 58508 455022881 454964374 no 176.575857198267 TraesCS1A01G025600 chr1A_12311139 chr1A 12311139 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025600 chr1A_12311188 chr1A 12311188 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025600 chr1A_12311173 chr1A 12311173 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025600 chr1A_12311124 chr1A 12311124 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025600 chr1A_12311243 chr1A 12311243 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025600 chr1A_12304215 chr1A 12304215 A G A G 3 synonymous_variant LOW transcript non_Triplet 12303670 12306423 2754 6 0.217864923747277 RFvsST 58508 455022881 454964374 no 233.56349557478 TraesCS1A01G025900 chr1A_12368815 chr1A 12368815 A A G G 4 missense_variant MODERATE transcript unique_Triplet 12363889 12369338 5450 1 0.018348623853211 RFvsST 58508 455022881 454964374 no 82.9310072501415 TraesCS1A01G026000 chr1A_12369432 chr1A 12369432 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 12371419 12372333 915 2 0.218579234972678 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G026000 chr1A_12369374 chr1A 12369374 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12371419 12372333 915 2 0.218579234972678 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G026200 chr1A_12506132 chr1A 12506132 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026200 chr1A_12506713 chr1A 12506713 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026200 chr1A_12502870 chr1A 12502870 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026200 chr1A_12504463 chr1A 12504463 T T C C 4 synonymous_variant LOW transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026200 chr1A_12505485 chr1A 12505485 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026200 chr1A_12506554 chr1A 12506554 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 12503897 12505126 1230 6 0.48780487804878 RFvsST 58508 455022881 454964374 no 458.419256762047 TraesCS1A01G026400 chr1A_12587101 chr1A 12587101 G A G A 3 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12587161 chr1A 12587161 C C G G 4 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12588082 chr1A 12588082 A A G G 4 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12588095 chr1A 12588095 T C T C 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12585370 chr1A 12585370 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590225 chr1A 12590225 T C T C 3 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590318 chr1A 12590318 C A C A 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590590 chr1A 12590590 G T G T 3 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12591238 chr1A 12591238 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590383 chr1A 12590383 G A G A 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590413 chr1A 12590413 G A G A 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12591018 chr1A 12591018 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590266 chr1A 12590266 G T G T 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590172 chr1A 12590172 C T C T 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590620 chr1A 12590620 T C T C 3 missense_variant MODERATE transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12586732 chr1A 12586732 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12592135 chr1A 12592135 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590363 chr1A 12590363 G A G A 3 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G026400 chr1A_12590330 chr1A 12590330 C C T T 4 synonymous_variant LOW transcript non_Triplet 12586749 12590845 4097 19 0.463753966316817 RFvsST 58508 455022881 454964374 no 252.655538890992 TraesCS1A01G027200 chr1A_12915249 chr1A 12915249 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 12915066 12916989 1924 1 0.051975051975052 RFvsST 58508 455022881 454964374 no 30.7095586685602 TraesCS1A01G029300 chr1A_13761394 chr1A 13761394 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 13762850 13768161 5312 2 0.0376506024096386 RFvsST 58508 455022881 454964374 no 1684.92530024442 TraesCS1A01G029300 chr1A_13761247 chr1A 13761247 A C A C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 13762850 13768161 5312 2 0.0376506024096386 RFvsST 58508 455022881 454964374 no 1684.92530024442 TraesCS1A01G030100 chr1A_14046273 chr1A 14046273 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 14045725 14047753 2029 1 0.0492853622474125 RFvsST 58508 455022881 454964374 no 55.1850233959045 TraesCS1A01G030700 chr1A_14162726 chr1A 14162726 T T A A 4 intron_variant MODIFIER transcript unique_Triplet 14160615 14162941 2327 2 0.0859475719810915 RFvsST 58508 455022881 454964374 no 296.403968620183 TraesCS1A01G030700 chr1A_14163119 chr1A 14163119 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 14160615 14162941 2327 2 0.0859475719810915 RFvsST 58508 455022881 454964374 no 296.403968620183 TraesCS1A01G033000 chr1A_15438394 chr1A 15438394 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 15430793 15437134 6342 3 0.0473036896877956 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G033000 chr1A_15438327 chr1A 15438327 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 15430793 15437134 6342 3 0.0473036896877956 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G033000 chr1A_15438314 chr1A 15438314 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 15430793 15437134 6342 3 0.0473036896877956 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G037400 chr1A_20897386 chr1A 20897386 G G C C 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20894769 chr1A 20894769 G G A A 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20893971 chr1A 20893971 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20897857 chr1A 20897857 C C G G 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20895297 chr1A 20895297 G G T T 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20895392 chr1A 20895392 A A G G 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20895204 chr1A 20895204 G G A A 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20898124 chr1A 20898124 G G C C 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20897665 chr1A 20897665 G G C C 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20898169 chr1A 20898169 G G C C 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20895207 chr1A 20895207 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20895378 chr1A 20895378 C C A A 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20897656 chr1A 20897656 C C G G 4 missense_variant MODERATE transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20894313 chr1A 20894313 T T C C 4 synonymous_variant LOW transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037400 chr1A_20897740 chr1A 20897740 G A C C,A 6 stop_gained HIGH transcript unique_Triplet 20893775 20898493 4719 15 0.317863954227591 RFvsST 58508 455022881 454964374 no 447.139855886046 TraesCS1A01G037900 chr1A_20980096 chr1A 20980096 A A G G 4 synonymous_variant LOW transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20980112 chr1A 20980112 C T C T 3 missense_variant MODERATE transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978739 chr1A 20978739 A A G G 4 missense_variant MODERATE transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20980097 chr1A 20980097 A A G G 4 missense_variant MODERATE transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978004 chr1A 20978004 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978738 chr1A 20978738 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20975751 chr1A 20975751 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978783 chr1A 20978783 T T C C 4 synonymous_variant LOW transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978933 chr1A 20978933 T C T C 3 missense_variant MODERATE transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978782 chr1A 20978782 C C G G 4 missense_variant MODERATE transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20978063 chr1A 20978063 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G037900 chr1A_20977987 chr1A 20977987 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 20977596 20980678 3083 12 0.389231268245216 RFvsST 58508 455022881 454964374 no 1312.1646234091 TraesCS1A01G039200 chr1A_21322420 chr1A 21322420 T T C C 4 missense_variant MODERATE transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21324370 chr1A 21324370 A A T T 4 synonymous_variant LOW transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21322352 chr1A 21322352 T T C C 4 synonymous_variant LOW transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21324473 chr1A 21324473 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21327194 chr1A 21327194 T T G G 4 synonymous_variant LOW transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21334763 chr1A 21334763 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21323245 chr1A 21323245 G A G A 3 synonymous_variant LOW transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039200 chr1A_21334799 chr1A 21334799 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 21322329 21334029 11701 8 0.0683702247671139 RFvsST 58508 455022881 454964374 no 12.5335369805812 TraesCS1A01G039400 chr1A_21626727 chr1A 21626727 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 21618317 21626615 8299 3 0.0361489336064586 RFvsST 58508 455022881 454964374 no 5.643606057568 TraesCS1A01G039400 chr1A_21619958 chr1A 21619958 A A G G 4 synonymous_variant LOW transcript non_Triplet 21618317 21626615 8299 3 0.0361489336064586 RFvsST 58508 455022881 454964374 no 5.643606057568 TraesCS1A01G039400 chr1A_21624934 chr1A 21624934 T T C C 4 synonymous_variant LOW transcript non_Triplet 21618317 21626615 8299 3 0.0361489336064586 RFvsST 58508 455022881 454964374 no 5.643606057568 TraesCS1A01G040400 chr1A_22294979 chr1A 22294979 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22287727 22291553 3827 2 0.0522602560752548 RFvsST 58508 455022881 454964374 no 60.7775732857416 TraesCS1A01G040400 chr1A_22289784 chr1A 22289784 G G T T 4 synonymous_variant LOW transcript unique_Triplet 22287727 22291553 3827 2 0.0522602560752548 RFvsST 58508 455022881 454964374 no 60.7775732857416 TraesCS1A01G040500 chr1A_22292024 chr1A 22292024 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22291753 22293776 2024 2 0.0988142292490119 RFvsST 58508 455022881 454964374 no 24.0112704287882 TraesCS1A01G040500 chr1A_22293387 chr1A 22293387 A A G G 4 synonymous_variant LOW transcript unique_Triplet 22291753 22293776 2024 2 0.0988142292490119 RFvsST 58508 455022881 454964374 no 24.0112704287882 TraesCS1A01G042700 chr1A_23339505 chr1A 23339505 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 23339618 23340516 899 2 0.222469410456062 RFvsST 58508 455022881 454964374 no 964.341735375083 TraesCS1A01G042700 chr1A_23339529 chr1A 23339529 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 23339618 23340516 899 2 0.222469410456062 RFvsST 58508 455022881 454964374 no 964.341735375083 TraesCS1A01G043200 chr1A_23967143 chr1A 23967143 C G C G 3 missense_variant MODERATE transcript non_Triplet 23966296 23969965 3670 1 0.0272479564032698 RFvsST 58508 455022881 454964374 no 230.792503047565 TraesCS1A01G046400 chr1A_28364675 chr1A 28364675 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046400 chr1A_28360847 chr1A 28360847 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046400 chr1A_28361810 chr1A 28361810 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046400 chr1A_28363063 chr1A 28363063 A G A G 3 synonymous_variant LOW transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046400 chr1A_28362880 chr1A 28362880 G A G A 3 synonymous_variant LOW transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046400 chr1A_28362042 chr1A 28362042 T A T A 3 intron_variant MODIFIER transcript unique_Triplet 28361237 28364562 3326 6 0.180396873120866 RFvsST 58508 455022881 454964374 no 601.322929322305 TraesCS1A01G046500 chr1A_28620138 chr1A 28620138 T C T C 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28614804 chr1A 28614804 A G A G 3 missense_variant MODERATE transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28619587 chr1A 28619587 C T C T 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620198 chr1A 28620198 C G C G 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620132 chr1A 28620132 C T C T 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28614301 chr1A 28614301 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28613922 chr1A 28613922 C T C T 3 missense_variant MODERATE transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28614097 chr1A 28614097 C T C T 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28617780 chr1A 28617780 T C T C 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620333 chr1A 28620333 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620272 chr1A 28620272 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620381 chr1A 28620381 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28620271 chr1A 28620271 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046500 chr1A_28611790 chr1A 28611790 G A G A 3 synonymous_variant LOW transcript unique_Triplet 28610330 28620522 10193 14 0.137349161189051 RFvsST 58508 455022881 454964374 no 199.747904026798 TraesCS1A01G046600 chr1A_28622947 chr1A 28622947 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 28623296 28626864 3569 3 0.0840571588680303 RFvsST 58508 455022881 454964374 no 32.2574214785916 TraesCS1A01G046600 chr1A_28622835 chr1A 28622835 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 28623296 28626864 3569 3 0.0840571588680303 RFvsST 58508 455022881 454964374 no 32.2574214785916 TraesCS1A01G046600 chr1A_28626828 chr1A 28626828 C G C G 3 synonymous_variant LOW transcript non_Triplet 28623296 28626864 3569 3 0.0840571588680303 RFvsST 58508 455022881 454964374 no 32.2574214785916 TraesCS1A01G046700 chr1A_28626991 chr1A 28626991 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 28630097 28631780 1684 3 0.178147268408551 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G046700 chr1A_28627929 chr1A 28627929 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 28630097 28631780 1684 3 0.178147268408551 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G046700 chr1A_28626883 chr1A 28626883 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 28630097 28631780 1684 3 0.178147268408551 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G046800 chr1A_28709793 chr1A 28709793 C T C T 3 missense_variant MODERATE transcript non_Triplet 28708216 28710413 2198 1 0.0454959053685168 RFvsST 58508 455022881 454964374 no 3.91533943329092 TraesCS1A01G047000 chr1A_28760221 chr1A 28760221 T A T A 3 missense_variant MODERATE transcript unique_Triplet 28757482 28762374 4893 5 0.102186797465767 RFvsST 58508 455022881 454964374 no 447.653210273201 TraesCS1A01G047000 chr1A_28762587 chr1A 28762587 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 28757482 28762374 4893 5 0.102186797465767 RFvsST 58508 455022881 454964374 no 447.653210273201 TraesCS1A01G047000 chr1A_28761955 chr1A 28761955 G C G C 3 synonymous_variant LOW transcript unique_Triplet 28757482 28762374 4893 5 0.102186797465767 RFvsST 58508 455022881 454964374 no 447.653210273201 TraesCS1A01G047000 chr1A_28761964 chr1A 28761964 T C T C 3 synonymous_variant LOW transcript unique_Triplet 28757482 28762374 4893 5 0.102186797465767 RFvsST 58508 455022881 454964374 no 447.653210273201 TraesCS1A01G047000 chr1A_28762153 chr1A 28762153 C G C G 3 synonymous_variant LOW transcript unique_Triplet 28757482 28762374 4893 5 0.102186797465767 RFvsST 58508 455022881 454964374 no 447.653210273201 TraesCS1A01G049700 chr1A_31781591 chr1A 31781591 C T C T 3 missense_variant MODERATE transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G049700 chr1A_31779240 chr1A 31779240 T T C C 4 synonymous_variant LOW transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G049700 chr1A_31781725 chr1A 31781725 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G049700 chr1A_31781750 chr1A 31781750 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G049700 chr1A_31777751 chr1A 31777751 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G049700 chr1A_31779285 chr1A 31779285 T T C C 4 synonymous_variant LOW transcript unique_Triplet 31779184 31781721 2538 6 0.236406619385343 RFvsST 58508 455022881 454964374 no 187.558006041547 TraesCS1A01G050100 chr1A_32088842 chr1A 32088842 G A G A 3 synonymous_variant LOW transcript unique_Triplet 32084794 32088845 4052 2 0.0493583415597236 RFvsST 58508 455022881 454964374 no 74.4208216065032 TraesCS1A01G050100 chr1A_32087536 chr1A 32087536 C T C T 3 synonymous_variant LOW transcript unique_Triplet 32084794 32088845 4052 2 0.0493583415597236 RFvsST 58508 455022881 454964374 no 74.4208216065032 TraesCS1A01G051700 chr1A_33373164 chr1A 33373164 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 33371784 33373026 1243 2 0.160901045856798 RFvsST 58508 455022881 454964374 no 3711.96710531498 TraesCS1A01G051700 chr1A_33373162 chr1A 33373162 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 33371784 33373026 1243 2 0.160901045856798 RFvsST 58508 455022881 454964374 no 3711.96710531498 TraesCS1A01G051800 chr1A_33372474 chr1A 33372474 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 33373636 33374973 1338 2 0.149476831091181 RFvsST 58508 455022881 454964374 no 13.9508363574835 TraesCS1A01G051800 chr1A_33375488 chr1A 33375488 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 33373636 33374973 1338 2 0.149476831091181 RFvsST 58508 455022881 454964374 no 13.9508363574835 TraesCS1A01G051900 chr1A_33375691 chr1A 33375691 T G T G 3 synonymous_variant LOW transcript unique_Triplet 33375628 33375804 177 1 0.564971751412429 RFvsST 58508 455022881 454964374 no 50.5217597157111 TraesCS1A01G052200 chr1A_34173061 chr1A 34173061 T C T C 3 synonymous_variant LOW transcript non_Triplet 34162119 34173663 11545 4 0.0346470333477696 RFvsST 58508 455022881 454964374 no 110.202988134979 TraesCS1A01G052200 chr1A_34162954 chr1A 34162954 A G A G 3 missense_variant MODERATE transcript non_Triplet 34162119 34173663 11545 4 0.0346470333477696 RFvsST 58508 455022881 454964374 no 110.202988134979 TraesCS1A01G052200 chr1A_34173064 chr1A 34173064 T C T C 3 synonymous_variant LOW transcript non_Triplet 34162119 34173663 11545 4 0.0346470333477696 RFvsST 58508 455022881 454964374 no 110.202988134979 TraesCS1A01G052200 chr1A_34165218 chr1A 34165218 G C G C 3 synonymous_variant LOW transcript non_Triplet 34162119 34173663 11545 4 0.0346470333477696 RFvsST 58508 455022881 454964374 no 110.202988134979 TraesCS1A01G054300 chr1A_35932549 chr1A 35932549 G C G C 3 missense_variant MODERATE transcript unique_Triplet 35931964 35936127 4164 1 0.0240153698366955 RFvsST 58508 455022881 454964374 no 285.785002562413 TraesCS1A01G054400 chr1A_35938095 chr1A 35938095 C T C T 3 missense_variant MODERATE transcript unique_Triplet 35937679 35944435 6757 1 0.0147994672191801 RFvsST 58508 455022881 454964374 no 32.8008415319771 TraesCS1A01G054900 chr1A_36271005 chr1A 36271005 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36267526 36270811 3286 2 0.0608642726719416 RFvsST 58508 455022881 454964374 no 78.0122721202712 TraesCS1A01G054900 chr1A_36268490 chr1A 36268490 C T C T 3 missense_variant MODERATE transcript unique_Triplet 36267526 36270811 3286 2 0.0608642726719416 RFvsST 58508 455022881 454964374 no 78.0122721202712 TraesCS1A01G055200 chr1A_36281021 chr1A 36281021 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36278871 36280282 1412 1 0.0708215297450425 RFvsST 58508 455022881 454964374 no 389.77483680002 TraesCS1A01G055400 chr1A_36569738 chr1A 36569738 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36569532 chr1A 36569532 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36566200 chr1A 36566200 C T C T 3 missense_variant MODERATE transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36569790 chr1A 36569790 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36569717 chr1A 36569717 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36569647 chr1A 36569647 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36565739 chr1A 36565739 T C T C 3 synonymous_variant LOW transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G055400 chr1A_36566299 chr1A 36566299 T C T C 3 missense_variant MODERATE transcript unique_Triplet 36562050 36569405 7356 8 0.108754758020663 RFvsST 58508 455022881 454964374 no 96.2261550007298 TraesCS1A01G061700 chr1A_42255454 chr1A 42255454 G G A A 4 missense_variant MODERATE transcript non_Triplet 42251783 42256215 4433 1 0.0225580870742161 RFvsST 58508 455022881 454964374 no 1040.25456675015 TraesCS1A01G066900 chr1A_49153268 chr1A 49153268 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 49149676 49153899 4224 1 0.0236742424242424 RFvsST 58508 455022881 454964374 no 5304.16755384966 TraesCS1A01G082100 chr1A_65265658 chr1A 65265658 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 65266344 65268143 1800 1 0.0555555555555556 RFvsST 58508 455022881 454964374 no 5.01441588043938 TraesCS1A01G089800 chr1A_79168901 chr1A 79168901 G A G A 3 missense_variant MODERATE transcript unique_Triplet 79167267 79169087 1821 1 0.0549148819330038 RFvsST 58508 455022881 454964374 no 258.761146771658 TraesCS1A01G099300 chr1A_95825627 chr1A 95825627 G G A A 4 synonymous_variant LOW transcript unique_Triplet 95820672 95825974 5303 1 0.0188572506128606 RFvsST 58508 455022881 454964374 no 222.307326680934 TraesCS1A01G112100 chr1A_113860349 chr1A 113860349 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 113858216 113861478 3263 1 0.0306466441924609 RFvsST 58508 455022881 454964374 no 42.4793431909584 TraesCS1A01G112700 chr1A_115357763 chr1A 115357763 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 115358762 115362931 4170 1 0.0239808153477218 RFvsST 58508 455022881 454964374 no 133.682782569962 TraesCS1A01G120000 chr1A_132416144 chr1A 132416144 C T C T 3 missense_variant MODERATE transcript non_Triplet 132414477 132416648 2172 1 0.0460405156537753 RFvsST 58508 455022881 454964374 no 39.0766676378393 TraesCS1A01G132600 chr1A_181753837 chr1A 181753837 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 181753909 181778093 24185 1 0.00413479429398387 RFvsST 58508 455022881 454964374 no 198.370936627637 TraesCS1A01G133700 chr1A_189711028 chr1A 189711028 C C T T 4 synonymous_variant LOW transcript non_Triplet 189710004 189722289 12286 1 0.00813934559661403 RFvsST 58508 455022881 454964374 no 438.510418085552 TraesCS1A01G135600 chr1A_208882495 chr1A 208882495 T T C C 4 missense_variant MODERATE transcript unique_Triplet 208881364 208913376 32013 1 0.00312373098428763 RFvsST 58508 455022881 454964374 no 50.9158413797061 TraesCS1A01G142200 chr1A_242012504 chr1A 242012504 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 241993266 242012443 19178 1 0.00521430806132026 RFvsST 58508 455022881 454964374 no 92.6993408838715 TraesCS1A01G142400 chr1A_243162252 chr1A 243162252 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 243160798 243162917 2120 1 0.0471698113207547 RFvsST 58508 455022881 454964374 no 737.21530626535 TraesCS1A01G154300 chr1A_268919910 chr1A 268919910 T G T G 3 missense_variant MODERATE transcript unique_Triplet 268914898 268929380 14483 1 0.00690464682731478 RFvsST 58508 455022881 454964374 no 48.0883226104611 TraesCS1A01G158800 chr1A_283844047 chr1A 283844047 G A G A 3 synonymous_variant LOW transcript non_Triplet 283842897 283859559 16663 1 0.0060013202904639 RFvsST 58508 455022881 454964374 no 225.156018351684 TraesCS1A01G168000 chr1A_300724214 chr1A 300724214 C C T T 4 missense_variant MODERATE transcript non_Triplet 300723876 300724628 753 1 0.132802124833997 RFvsST 58508 455022881 454964374 no 47.9152832240683 TraesCS1A01G170000 chr1A_303728625 chr1A 303728625 A A T T 4 missense_variant MODERATE transcript unique_Triplet 303728090 303729971 1882 1 0.053134962805526 RFvsST 58508 455022881 454964374 no 319.112357712825 TraesCS1A01G179500 chr1A_324498052 chr1A 324498052 G G A A 4 synonymous_variant LOW transcript unique_Triplet 324494559 324498360 3802 1 0.0263019463440295 RFvsST 58508 455022881 454964374 no 130.83157895113 TraesCS1A01G182700 chr1A_330770782 chr1A 330770782 A G A G 3 synonymous_variant LOW transcript unique_Triplet 330766325 330771381 5057 1 0.0197745699031046 RFvsST 58508 455022881 454964374 no 165.757229806358 TraesCS1A01G183800 chr1A_333622621 chr1A 333622621 G A G A 3 missense_variant MODERATE transcript unique_Triplet 333613545 333627224 13680 1 0.00730994152046784 RFvsST 58508 455022881 454964374 no 661.620932196658 TraesCS1A01G190500 chr1A_344294441 chr1A 344294441 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 344290280 344294594 4315 1 0.0231749710312862 RFvsST 58508 455022881 454964374 no 148.251538865055 TraesCS1A01G190700 chr1A_344483109 chr1A 344483109 C C T T 4 synonymous_variant LOW transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344481064 chr1A 344481064 G G T T 4 missense_variant MODERATE transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344482647 chr1A 344482647 C T C T 3 missense_variant MODERATE transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344486158 chr1A 344486158 G G C C 4 missense_variant MODERATE transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344480903 chr1A 344480903 G G A A 4 synonymous_variant LOW transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344482500 chr1A 344482500 G A G A 3 synonymous_variant LOW transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190700 chr1A_344482920 chr1A 344482920 C C T T 4 missense_variant MODERATE transcript non_Triplet 344480444 344488289 7846 7 0.0892174356359929 RFvsST 58508 455022881 454964374 no 334.982827467443 TraesCS1A01G190800 chr1A_345108406 chr1A 345108406 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 345108587 345116464 7878 2 0.0253871541000254 RFvsST 58508 455022881 454964374 no 78.4387371509203 TraesCS1A01G190800 chr1A_345114315 chr1A 345114315 C C T T 4 missense_variant MODERATE transcript unique_Triplet 345108587 345116464 7878 2 0.0253871541000254 RFvsST 58508 455022881 454964374 no 78.4387371509203 TraesCS1A01G191100 chr1A_345310497 chr1A 345310497 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 345305902 345306243 342 1 0.292397660818713 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G191200 chr1A_345309052 chr1A 345309052 A A G G 4 missense_variant MODERATE transcript non_Triplet 345308637 345310177 1541 5 0.324464633354964 RFvsST 58508 455022881 454964374 no 261.93857735839 TraesCS1A01G191200 chr1A_345309794 chr1A 345309794 G T G T 3 missense_variant MODERATE transcript non_Triplet 345308637 345310177 1541 5 0.324464633354964 RFvsST 58508 455022881 454964374 no 261.93857735839 TraesCS1A01G191200 chr1A_345308692 chr1A 345308692 G G A A 4 missense_variant MODERATE transcript non_Triplet 345308637 345310177 1541 5 0.324464633354964 RFvsST 58508 455022881 454964374 no 261.93857735839 TraesCS1A01G191200 chr1A_345309182 chr1A 345309182 T T G G 4 synonymous_variant LOW transcript non_Triplet 345308637 345310177 1541 5 0.324464633354964 RFvsST 58508 455022881 454964374 no 261.93857735839 TraesCS1A01G191200 chr1A_345309209 chr1A 345309209 C C T T 4 synonymous_variant LOW transcript non_Triplet 345308637 345310177 1541 5 0.324464633354964 RFvsST 58508 455022881 454964374 no 261.93857735839 TraesCS1A01G191300 chr1A_345785486 chr1A 345785486 A A G G 4 missense_variant MODERATE transcript unique_Triplet 345783702 345786481 2780 2 0.0719424460431655 RFvsST 58508 455022881 454964374 no 705.115796189042 TraesCS1A01G191300 chr1A_345783748 chr1A 345783748 T T A A 4 missense_variant MODERATE transcript unique_Triplet 345783702 345786481 2780 2 0.0719424460431655 RFvsST 58508 455022881 454964374 no 705.115796189042 TraesCS1A01G191400 chr1A_345789970 chr1A 345789970 C C A A 4 missense_variant MODERATE transcript unique_Triplet 345788051 345790004 1954 3 0.15353121801433 RFvsST 58508 455022881 454964374 no 109.962353148044 TraesCS1A01G191400 chr1A_345788875 chr1A 345788875 T T C C 4 synonymous_variant LOW transcript unique_Triplet 345788051 345790004 1954 3 0.15353121801433 RFvsST 58508 455022881 454964374 no 109.962353148044 TraesCS1A01G191400 chr1A_345786602 chr1A 345786602 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 345788051 345790004 1954 3 0.15353121801433 RFvsST 58508 455022881 454964374 no 109.962353148044 TraesCS1A01G191900 chr1A_347321689 chr1A 347321689 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 347322425 347324298 1874 3 0.16008537886873 RFvsST 58508 455022881 454964374 no 120.059771712986 TraesCS1A01G191900 chr1A_347322461 chr1A 347322461 G G A A 4 synonymous_variant LOW transcript non_Triplet 347322425 347324298 1874 3 0.16008537886873 RFvsST 58508 455022881 454964374 no 120.059771712986 TraesCS1A01G191900 chr1A_347324145 chr1A 347324145 C C T T 4 missense_variant MODERATE transcript non_Triplet 347322425 347324298 1874 3 0.16008537886873 RFvsST 58508 455022881 454964374 no 120.059771712986 TraesCS1A01G192200 chr1A_347621726 chr1A 347621726 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 347619083 347621565 2483 2 0.0805477245267821 RFvsST 58508 455022881 454964374 no 95.0376526449576 TraesCS1A01G192200 chr1A_347621733 chr1A 347621733 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 347619083 347621565 2483 2 0.0805477245267821 RFvsST 58508 455022881 454964374 no 95.0376526449576 TraesCS1A01G192600 chr1A_347923064 chr1A 347923064 C T C T 3 missense_variant MODERATE transcript non_Triplet 347922445 347923080 636 2 0.314465408805031 RFvsST 58508 455022881 454964374 no 108.150788184163 TraesCS1A01G192600 chr1A_347922491 chr1A 347922491 A A G G 4 missense_variant MODERATE transcript non_Triplet 347922445 347923080 636 2 0.314465408805031 RFvsST 58508 455022881 454964374 no 108.150788184163 TraesCS1A01G192800 chr1A_348400500 chr1A 348400500 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 348398667 348400619 1953 1 0.0512032770097286 RFvsST 58508 455022881 454964374 no 275.223976009283 TraesCS1A01G193000 chr1A_348721534 chr1A 348721534 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 348717417 348721632 4216 1 0.023719165085389 RFvsST 58508 455022881 454964374 no 254.469792039784 TraesCS1A01G193600 chr1A_350762109 chr1A 350762109 C C A A 4 missense_variant MODERATE transcript unique_Triplet 350753898 350762907 9010 1 0.0110987791342952 RFvsST 58508 455022881 454964374 no 69.4286195079262 TraesCS1A01G193900 chr1A_351347747 chr1A 351347747 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 351344398 351344970 573 2 0.349040139616056 RFvsST 58508 455022881 454964374 no 1.74609707341204 TraesCS1A01G193900 chr1A_351344913 chr1A 351344913 T T C C 4 missense_variant MODERATE transcript unique_Triplet 351344398 351344970 573 2 0.349040139616056 RFvsST 58508 455022881 454964374 no 1.74609707341204 TraesCS1A01G194400 chr1A_351607599 chr1A 351607599 C C T T 4 synonymous_variant LOW transcript unique_Triplet 351604602 351608126 3525 2 0.0567375886524823 RFvsST 58508 455022881 454964374 no 160.540220236492 TraesCS1A01G194400 chr1A_351607887 chr1A 351607887 T C T C 3 missense_variant MODERATE transcript unique_Triplet 351604602 351608126 3525 2 0.0567375886524823 RFvsST 58508 455022881 454964374 no 160.540220236492 TraesCS1A01G194500 chr1A_351856823 chr1A 351856823 T T C C 4 missense_variant MODERATE transcript non_Triplet 351856640 351857125 486 1 0.205761316872428 RFvsST 58508 455022881 454964374 no 27.8859760322439 TraesCS1A01G194800 chr1A_351879794 chr1A 351879794 C T C T 3 synonymous_variant LOW transcript unique_Triplet 351878373 351882317 3945 2 0.0506970849176172 RFvsST 58508 455022881 454964374 no 88.9765362701556 TraesCS1A01G194800 chr1A_351883116 chr1A 351883116 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 351878373 351882317 3945 2 0.0506970849176172 RFvsST 58508 455022881 454964374 no 88.9765362701556 TraesCS1A01G195000 chr1A_352013087 chr1A 352013087 T T C C 4 synonymous_variant LOW transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352015605 chr1A 352015605 G A G A 3 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352015564 chr1A 352015564 A A T T 4 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352013251 chr1A 352013251 T T C C 4 intron_variant MODIFIER transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352013332 chr1A 352013332 T G T G 3 intron_variant MODIFIER transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352016376 chr1A 352016376 G A G A 3 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352015427 chr1A 352015427 C T C T 3 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352013338 chr1A 352013338 G G A A 4 intron_variant MODIFIER transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352014172 chr1A 352014172 C T C T 3 synonymous_variant LOW transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352015649 chr1A 352015649 G G C C 4 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352014666 chr1A 352014666 A A G G 4 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352013055 chr1A 352013055 T T C C 4 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352014902 chr1A 352014902 G A G A 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352015436 chr1A 352015436 G A G A 3 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352016020 chr1A 352016020 A G A G 3 missense_variant MODERATE transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195000 chr1A_352014319 chr1A 352014319 A G A G 3 intron_variant MODIFIER transcript non_Triplet 352013037 352016495 3459 16 0.462561433940445 RFvsST 58508 455022881 454964374 no 306.734427519145 TraesCS1A01G195100 chr1A_352139318 chr1A 352139318 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 352137177 352140818 3642 2 0.0549148819330038 RFvsST 58508 455022881 454964374 no 305.59751171491 TraesCS1A01G195100 chr1A_352137657 chr1A 352137657 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 352137177 352140818 3642 2 0.0549148819330038 RFvsST 58508 455022881 454964374 no 305.59751171491 TraesCS1A01G195200 chr1A_352179643 chr1A 352179643 G G C C 4 synonymous_variant LOW transcript unique_Triplet 352174251 352179849 5599 1 0.017860332202179 RFvsST 58508 455022881 454964374 no 24.9023834422821 TraesCS1A01G195300 chr1A_352854476 chr1A 352854476 C C T T 4 missense_variant MODERATE transcript unique_Triplet 352853002 352861601 8600 2 0.0232558139534884 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G195300 chr1A_352861797 chr1A 352861797 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 352853002 352861601 8600 2 0.0232558139534884 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G195400 chr1A_353256926 chr1A 353256926 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 353253624 353256368 2745 2 0.0728597449908925 RFvsST 58508 455022881 454964374 no 1665.87027691838 TraesCS1A01G195400 chr1A_353252127 chr1A 353252127 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 353253624 353256368 2745 2 0.0728597449908925 RFvsST 58508 455022881 454964374 no 1665.87027691838 TraesCS1A01G195500 chr1A_353254904 chr1A 353254904 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 353256939 353259934 2996 1 0.0333778371161549 RFvsST 58508 455022881 454964374 no 209.404762808471 TraesCS1A01G195700 chr1A_353626434 chr1A 353626434 C C G G 4 synonymous_variant LOW transcript unique_Triplet 353626308 353631175 4868 3 0.0616269515201315 RFvsST 58508 455022881 454964374 no 215.119457418541 TraesCS1A01G195700 chr1A_353629670 chr1A 353629670 C C A A 4 missense_variant MODERATE transcript unique_Triplet 353626308 353631175 4868 3 0.0616269515201315 RFvsST 58508 455022881 454964374 no 215.119457418541 TraesCS1A01G195700 chr1A_353626193 chr1A 353626193 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 353626308 353631175 4868 3 0.0616269515201315 RFvsST 58508 455022881 454964374 no 215.119457418541 TraesCS1A01G196500 chr1A_354934775 chr1A 354934775 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 354934937 354937526 2590 2 0.0772200772200772 RFvsST 58508 455022881 454964374 no 2693.40182391115 TraesCS1A01G196500 chr1A_354934786 chr1A 354934786 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 354934937 354937526 2590 2 0.0772200772200772 RFvsST 58508 455022881 454964374 no 2693.40182391115 TraesCS1A01G196600 chr1A_354938473 chr1A 354938473 C G C G 3 synonymous_variant LOW transcript unique_Triplet 354938220 354940269 2050 1 0.0487804878048781 RFvsST 58508 455022881 454964374 no 11.2812842455286 TraesCS1A01G197000 chr1A_355321741 chr1A 355321741 G A G A 3 missense_variant MODERATE transcript unique_Triplet 355320902 355324840 3939 1 0.0253871541000254 RFvsST 58508 455022881 454964374 no 169.011076356499 TraesCS1A01G197200 chr1A_355335999 chr1A 355335999 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 355330163 355334012 3850 1 0.025974025974026 RFvsST 58508 455022881 454964374 no 181.391501161797 TraesCS1A01G197600 chr1A_355627775 chr1A 355627775 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 355624317 355627850 3534 2 0.0565930956423316 RFvsST 58508 455022881 454964374 no 886.114987914384 TraesCS1A01G197600 chr1A_355624342 chr1A 355624342 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 355624317 355627850 3534 2 0.0565930956423316 RFvsST 58508 455022881 454964374 no 886.114987914384 TraesCS1A01G197900 chr1A_355718637 chr1A 355718637 G A G A 3 missense_variant MODERATE transcript unique_Triplet 355718355 355718861 507 3 0.591715976331361 RFvsST 58508 455022881 454964374 no 293.926956774528 TraesCS1A01G197900 chr1A_355718804 chr1A 355718804 C C T T 4 synonymous_variant LOW transcript unique_Triplet 355718355 355718861 507 3 0.591715976331361 RFvsST 58508 455022881 454964374 no 293.926956774528 TraesCS1A01G197900 chr1A_355718508 chr1A 355718508 A A G G 4 missense_variant MODERATE transcript unique_Triplet 355718355 355718861 507 3 0.591715976331361 RFvsST 58508 455022881 454964374 no 293.926956774528 TraesCS1A01G198000 chr1A_355721800 chr1A 355721800 A A G G 4 synonymous_variant LOW transcript unique_Triplet 355720724 355722631 1908 5 0.262054507337526 RFvsST 58508 455022881 454964374 no 212.437929923315 TraesCS1A01G198000 chr1A_355722334 chr1A 355722334 G G A A 4 synonymous_variant LOW transcript unique_Triplet 355720724 355722631 1908 5 0.262054507337526 RFvsST 58508 455022881 454964374 no 212.437929923315 TraesCS1A01G198000 chr1A_355722229 chr1A 355722229 A A C C 4 synonymous_variant LOW transcript unique_Triplet 355720724 355722631 1908 5 0.262054507337526 RFvsST 58508 455022881 454964374 no 212.437929923315 TraesCS1A01G198000 chr1A_355722223 chr1A 355722223 A A C C 4 synonymous_variant LOW transcript unique_Triplet 355720724 355722631 1908 5 0.262054507337526 RFvsST 58508 455022881 454964374 no 212.437929923315 TraesCS1A01G198000 chr1A_355721423 chr1A 355721423 A G A G 3 missense_variant MODERATE transcript unique_Triplet 355720724 355722631 1908 5 0.262054507337526 RFvsST 58508 455022881 454964374 no 212.437929923315 TraesCS1A01G198200 chr1A_356392452 chr1A 356392452 A G A G 3 missense_variant MODERATE transcript unique_Triplet 356390021 356392519 2499 2 0.0800320128051221 RFvsST 58508 455022881 454964374 no 48.6728225343496 TraesCS1A01G198200 chr1A_356390189 chr1A 356390189 G C G C 3 missense_variant MODERATE transcript unique_Triplet 356390021 356392519 2499 2 0.0800320128051221 RFvsST 58508 455022881 454964374 no 48.6728225343496 TraesCS1A01G203000 chr1A_364228024 chr1A 364228024 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 364226204 364230499 4296 2 0.0465549348230912 RFvsST 58508 455022881 454964374 no 709.665175787877 TraesCS1A01G203000 chr1A_364226253 chr1A 364226253 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 364226204 364230499 4296 2 0.0465549348230912 RFvsST 58508 455022881 454964374 no 709.665175787877 TraesCS1A01G203600 chr1A_365493113 chr1A 365493113 G A G A 3 synonymous_variant LOW transcript non_Triplet 365492282 365493428 1147 1 0.0871839581517001 RFvsST 58508 455022881 454964374 no 86.3518632462703 TraesCS1A01G206600 chr1A_368809069 chr1A 368809069 C C T T 4 synonymous_variant LOW transcript unique_Triplet 368808183 368815690 7508 3 0.039957378795951 RFvsST 58508 455022881 454964374 no 274.412907863402 TraesCS1A01G206600 chr1A_368813377 chr1A 368813377 G G A A 4 missense_variant MODERATE transcript unique_Triplet 368808183 368815690 7508 3 0.039957378795951 RFvsST 58508 455022881 454964374 no 274.412907863402 TraesCS1A01G206600 chr1A_368807979 chr1A 368807979 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 368808183 368815690 7508 3 0.039957378795951 RFvsST 58508 455022881 454964374 no 274.412907863402 TraesCS1A01G206700 chr1A_368825479 chr1A 368825479 C C G G 4 synonymous_variant LOW transcript unique_Triplet 368820016 368829848 9833 5 0.0508491813281806 RFvsST 58508 455022881 454964374 no 90.8467920798105 TraesCS1A01G206700 chr1A_368819885 chr1A 368819885 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 368820016 368829848 9833 5 0.0508491813281806 RFvsST 58508 455022881 454964374 no 90.8467920798105 TraesCS1A01G206700 chr1A_368829970 chr1A 368829970 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 368820016 368829848 9833 5 0.0508491813281806 RFvsST 58508 455022881 454964374 no 90.8467920798105 TraesCS1A01G206700 chr1A_368821044 chr1A 368821044 C C T T 4 missense_variant MODERATE transcript unique_Triplet 368820016 368829848 9833 5 0.0508491813281806 RFvsST 58508 455022881 454964374 no 90.8467920798105 TraesCS1A01G206700 chr1A_368816004 chr1A 368816004 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 368820016 368829848 9833 5 0.0508491813281806 RFvsST 58508 455022881 454964374 no 90.8467920798105 TraesCS1A01G207600 chr1A_369501414 chr1A 369501414 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 369496837 369497763 927 1 0.107874865156419 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G221000 chr1A_389869490 chr1A 389869490 G T G T 3 synonymous_variant LOW transcript unique_Triplet 389869228 389874932 5705 3 0.0525854513584575 RFvsST 58508 455022881 454964374 no 294.902690114805 TraesCS1A01G221000 chr1A_389869619 chr1A 389869619 G G C C 4 synonymous_variant LOW transcript unique_Triplet 389869228 389874932 5705 3 0.0525854513584575 RFvsST 58508 455022881 454964374 no 294.902690114805 TraesCS1A01G221000 chr1A_389869363 chr1A 389869363 T T C C 4 missense_variant MODERATE transcript unique_Triplet 389869228 389874932 5705 3 0.0525854513584575 RFvsST 58508 455022881 454964374 no 294.902690114805 TraesCS1A01G221100 chr1A_390092493 chr1A 390092493 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 390086776 390096702 9927 5 0.0503676840938854 RFvsST 58508 455022881 454964374 no 1673.71664541534 TraesCS1A01G221100 chr1A_390089696 chr1A 390089696 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 390086776 390096702 9927 5 0.0503676840938854 RFvsST 58508 455022881 454964374 no 1673.71664541534 TraesCS1A01G221100 chr1A_390089743 chr1A 390089743 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 390086776 390096702 9927 5 0.0503676840938854 RFvsST 58508 455022881 454964374 no 1673.71664541534 TraesCS1A01G221100 chr1A_390096077 chr1A 390096077 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 390086776 390096702 9927 5 0.0503676840938854 RFvsST 58508 455022881 454964374 no 1673.71664541534 TraesCS1A01G221100 chr1A_390087954 chr1A 390087954 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 390086776 390096702 9927 5 0.0503676840938854 RFvsST 58508 455022881 454964374 no 1673.71664541534 TraesCS1A01G221400 chr1A_390640187 chr1A 390640187 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 390638795 390640123 1329 3 0.225733634311512 RFvsST 58508 455022881 454964374 no 668.210917462658 TraesCS1A01G221400 chr1A_390639822 chr1A 390639822 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 390638795 390640123 1329 3 0.225733634311512 RFvsST 58508 455022881 454964374 no 668.210917462658 TraesCS1A01G221400 chr1A_390639316 chr1A 390639316 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 390638795 390640123 1329 3 0.225733634311512 RFvsST 58508 455022881 454964374 no 668.210917462658 TraesCS1A01G221800 chr1A_391253406 chr1A 391253406 C C T T 4 synonymous_variant LOW transcript unique_Triplet 391249413 391255438 6026 5 0.0829737802854298 RFvsST 58508 455022881 454964374 no 143.502996624653 TraesCS1A01G221800 chr1A_391256888 chr1A 391256888 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 391249413 391255438 6026 5 0.0829737802854298 RFvsST 58508 455022881 454964374 no 143.502996624653 TraesCS1A01G221800 chr1A_391249448 chr1A 391249448 C C T T 4 synonymous_variant LOW transcript unique_Triplet 391249413 391255438 6026 5 0.0829737802854298 RFvsST 58508 455022881 454964374 no 143.502996624653 TraesCS1A01G221800 chr1A_391250292 chr1A 391250292 C C T T 4 synonymous_variant LOW transcript unique_Triplet 391249413 391255438 6026 5 0.0829737802854298 RFvsST 58508 455022881 454964374 no 143.502996624653 TraesCS1A01G221800 chr1A_391250514 chr1A 391250514 G G A A 4 synonymous_variant LOW transcript unique_Triplet 391249413 391255438 6026 5 0.0829737802854298 RFvsST 58508 455022881 454964374 no 143.502996624653 TraesCS1A01G221900 chr1A_391260213 chr1A 391260213 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 391257064 391260120 3057 2 0.0654236179260713 RFvsST 58508 455022881 454964374 no 367.564392783196 TraesCS1A01G221900 chr1A_391260192 chr1A 391260192 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 391257064 391260120 3057 2 0.0654236179260713 RFvsST 58508 455022881 454964374 no 367.564392783196 TraesCS1A01G222000 chr1A_391674559 chr1A 391674559 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 391670058 391674480 4423 2 0.0452181777074384 RFvsST 58508 455022881 454964374 no 154.751106889906 TraesCS1A01G222000 chr1A_391674570 chr1A 391674570 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 391670058 391674480 4423 2 0.0452181777074384 RFvsST 58508 455022881 454964374 no 154.751106889906 TraesCS1A01G222200 chr1A_391846532 chr1A 391846532 T T A A 4 synonymous_variant LOW transcript unique_Triplet 391846526 391851010 4485 1 0.0222965440356745 RFvsST 58508 455022881 454964374 no 74.0606668015278 TraesCS1A01G222700 chr1A_392526603 chr1A 392526603 G G A A 4 synonymous_variant LOW transcript unique_Triplet 392524060 392526890 2831 4 0.141292829388908 RFvsST 58508 455022881 454964374 no 133.351230366403 TraesCS1A01G222700 chr1A_392526521 chr1A 392526521 A A G G 4 missense_variant MODERATE transcript unique_Triplet 392524060 392526890 2831 4 0.141292829388908 RFvsST 58508 455022881 454964374 no 133.351230366403 TraesCS1A01G222700 chr1A_392526141 chr1A 392526141 T T G G 4 synonymous_variant LOW transcript unique_Triplet 392524060 392526890 2831 4 0.141292829388908 RFvsST 58508 455022881 454964374 no 133.351230366403 TraesCS1A01G222700 chr1A_392526504 chr1A 392526504 G G A A 4 synonymous_variant LOW transcript unique_Triplet 392524060 392526890 2831 4 0.141292829388908 RFvsST 58508 455022881 454964374 no 133.351230366403 TraesCS1A01G223300 chr1A_393468332 chr1A 393468332 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 393461639 393469861 8223 1 0.0121610117961814 RFvsST 58508 455022881 454964374 no 287.666678854444 TraesCS1A01G223700 chr1A_394258879 chr1A 394258879 T C T C 3 synonymous_variant LOW transcript unique_Triplet 394253125 394260286 7162 1 0.0139625802848366 RFvsST 58508 455022881 454964374 no 296.398398616512 TraesCS1A01G223900 chr1A_394321005 chr1A 394321005 A T A T 3 missense_variant MODERATE transcript unique_Triplet 394319860 394322326 2467 2 0.0810701256586948 RFvsST 58508 455022881 454964374 no 74.2835027663965 TraesCS1A01G223900 chr1A_394321199 chr1A 394321199 G A G A 3 synonymous_variant LOW transcript unique_Triplet 394319860 394322326 2467 2 0.0810701256586948 RFvsST 58508 455022881 454964374 no 74.2835027663965 TraesCS1A01G224000 chr1A_394326532 chr1A 394326532 C C T T 4 missense_variant MODERATE transcript unique_Triplet 394325478 394328348 2871 1 0.0348310693138279 RFvsST 58508 455022881 454964374 no 115.625430703647 TraesCS1A01G224500 chr1A_394569555 chr1A 394569555 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 394566812 394567183 372 4 1.0752688172043 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G224500 chr1A_394570942 chr1A 394570942 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 394566812 394567183 372 4 1.0752688172043 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G224500 chr1A_394569551 chr1A 394569551 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 394566812 394567183 372 4 1.0752688172043 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G224500 chr1A_394570784 chr1A 394570784 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 394566812 394567183 372 4 1.0752688172043 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G224800 chr1A_394852282 chr1A 394852282 C C T T 4 missense_variant MODERATE transcript unique_Triplet 394851597 394852955 1359 1 0.0735835172921266 RFvsST 58508 455022881 454964374 no 174.594102190903 TraesCS1A01G225000 chr1A_395175242 chr1A 395175242 C C A A 4 synonymous_variant LOW transcript unique_Triplet 395172140 395180253 8114 1 0.0123243776189302 RFvsST 58508 455022881 454964374 no 21.4268760651379 TraesCS1A01G225600 chr1A_396101421 chr1A 396101421 C C T T 4 synonymous_variant LOW transcript non_Triplet 396100633 396102564 1932 2 0.10351966873706 RFvsST 58508 455022881 454964374 no 181.91553383145 TraesCS1A01G225600 chr1A_396100779 chr1A 396100779 T C T C 3 synonymous_variant LOW transcript non_Triplet 396100633 396102564 1932 2 0.10351966873706 RFvsST 58508 455022881 454964374 no 181.91553383145 TraesCS1A01G226300 chr1A_396432289 chr1A 396432289 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 396428235 396432110 3876 1 0.0257997936016512 RFvsST 58508 455022881 454964374 no 133.46868545974 TraesCS1A01G226500 chr1A_396466917 chr1A 396466917 C C T T 4 missense_variant MODERATE transcript unique_Triplet 396463084 396468263 5180 3 0.0579150579150579 RFvsST 58508 455022881 454964374 no 133.85641964918 TraesCS1A01G226500 chr1A_396467168 chr1A 396467168 C T C T 3 synonymous_variant LOW transcript unique_Triplet 396463084 396468263 5180 3 0.0579150579150579 RFvsST 58508 455022881 454964374 no 133.85641964918 TraesCS1A01G226500 chr1A_396467422 chr1A 396467422 G G A A 4 missense_variant MODERATE transcript unique_Triplet 396463084 396468263 5180 3 0.0579150579150579 RFvsST 58508 455022881 454964374 no 133.85641964918 TraesCS1A01G226900 chr1A_397662971 chr1A 397662971 C C T T 4 synonymous_variant LOW transcript unique_Triplet 397658190 397663079 4890 1 0.0204498977505112 RFvsST 58508 455022881 454964374 no 10.2487000220025 TraesCS1A01G227000 chr1A_397738501 chr1A 397738501 A A T T 4 synonymous_variant LOW transcript unique_Triplet 397737287 397743497 6211 1 0.0161004669135405 RFvsST 58508 455022881 454964374 no 38.230846713398 TraesCS1A01G227100 chr1A_397773004 chr1A 397773004 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 397769681 397770422 742 4 0.539083557951483 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G227100 chr1A_397772292 chr1A 397772292 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 397769681 397770422 742 4 0.539083557951483 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G227100 chr1A_397772371 chr1A 397772371 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 397769681 397770422 742 4 0.539083557951483 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G227100 chr1A_397772156 chr1A 397772156 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 397769681 397770422 742 4 0.539083557951483 RFvsST 58508 455022881 454964374 no No_match TraesCS1A01G227200 chr1A_397773589 chr1A 397773589 G T G T 3 synonymous_variant LOW transcript unique_Triplet 397772413 397776081 3669 3 0.0817661488143908 RFvsST 58508 455022881 454964374 no 111.180243775886 TraesCS1A01G227200 chr1A_397775877 chr1A 397775877 G A G A 3 synonymous_variant LOW transcript unique_Triplet 397772413 397776081 3669 3 0.0817661488143908 RFvsST 58508 455022881 454964374 no 111.180243775886 TraesCS1A01G227200 chr1A_397773184 chr1A 397773184 T C T C 3 missense_variant MODERATE transcript unique_Triplet 397772413 397776081 3669 3 0.0817661488143908 RFvsST 58508 455022881 454964374 no 111.180243775886 TraesCS1A01G227300 chr1A_398050439 chr1A 398050439 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 398050613 398053291 2679 2 0.0746547219111609 RFvsST 58508 455022881 454964374 no 189.429483165809 TraesCS1A01G227300 chr1A_398052404 chr1A 398052404 T C T C 3 synonymous_variant LOW transcript unique_Triplet 398050613 398053291 2679 2 0.0746547219111609 RFvsST 58508 455022881 454964374 no 189.429483165809 TraesCS1A01G264100 chr1A_459514896 chr1A 459514896 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 459514437 459523742 9306 1 0.0107457554266065 RFvsST 403634444 593788532 190154089 no 110.58185181876 TraesCS1A01G266900 chr1A_462335079 chr1A 462335079 T T C C 4 synonymous_variant LOW transcript unique_Triplet 462335071 462336245 1175 1 0.0851063829787234 RFvsST 403634444 593788532 190154089 no 211.980726986524 TraesCS1A01G267300 chr1A_462434658 chr1A 462434658 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462435597 462438015 2419 5 0.20669698222406 RFvsST 403634444 593788532 190154089 no 157.32843685521 TraesCS1A01G267300 chr1A_462434780 chr1A 462434780 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462435597 462438015 2419 5 0.20669698222406 RFvsST 403634444 593788532 190154089 no 157.32843685521 TraesCS1A01G267300 chr1A_462434946 chr1A 462434946 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462435597 462438015 2419 5 0.20669698222406 RFvsST 403634444 593788532 190154089 no 157.32843685521 TraesCS1A01G267300 chr1A_462434503 chr1A 462434503 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462435597 462438015 2419 5 0.20669698222406 RFvsST 403634444 593788532 190154089 no 157.32843685521 TraesCS1A01G267300 chr1A_462435377 chr1A 462435377 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462435597 462438015 2419 5 0.20669698222406 RFvsST 403634444 593788532 190154089 no 157.32843685521 TraesCS1A01G270400 chr1A_464790878 chr1A 464790878 T T C C 4 missense_variant MODERATE transcript unique_Triplet 464790745 464793752 3008 1 0.0332446808510638 RFvsST 403634444 593788532 190154089 no 415.495925361728 TraesCS1A01G276200 chr1A_471476524 chr1A 471476524 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471476250 chr1A 471476250 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471476485 chr1A 471476485 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471479200 chr1A 471479200 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471478040 chr1A 471478040 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471476594 chr1A 471476594 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276200 chr1A_471478415 chr1A 471478415 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471480861 471483081 2221 7 0.315173345339937 RFvsST 403634444 593788532 190154089 no 22.0175357568573 TraesCS1A01G276300 chr1A_471488518 chr1A 471488518 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 471488205 471488660 456 1 0.219298245614035 RFvsST 403634444 593788532 190154089 no 104.187818432669 TraesCS1A01G276400 chr1A_471490099 chr1A 471490099 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 471490061 471494305 4245 1 0.0235571260306243 RFvsST 403634444 593788532 190154089 no 159.936071515737 TraesCS1A01G277100 chr1A_472167710 chr1A 472167710 A T A T 3 missense_variant MODERATE transcript unique_Triplet 472164533 472168990 4458 1 0.0224315836698071 RFvsST 403634444 593788532 190154089 no 45.0099543864337 TraesCS1A01G277200 chr1A_472169030 chr1A 472169030 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 472172188 472172431 244 1 0.409836065573771 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G277500 chr1A_473011854 chr1A 473011854 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 473010505 473011627 1123 2 0.178094390026714 RFvsST 403634444 593788532 190154089 no 490.926841771835 TraesCS1A01G277500 chr1A_473009776 chr1A 473009776 G C G C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 473010505 473011627 1123 2 0.178094390026714 RFvsST 403634444 593788532 190154089 no 490.926841771835 TraesCS1A01G278100 chr1A_474193024 chr1A 474193024 A G A G 3 synonymous_variant LOW transcript unique_Triplet 474189404 474196121 6718 2 0.0297707651086633 RFvsST 403634444 593788532 190154089 no 217.110675859384 TraesCS1A01G278100 chr1A_474189275 chr1A 474189275 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 474189404 474196121 6718 2 0.0297707651086633 RFvsST 403634444 593788532 190154089 no 217.110675859384 TraesCS1A01G278600 chr1A_474292262 chr1A 474292262 A G A G 3 splice_region_variant&intron_variant LOW transcript nonUnique_Triplet 474291504 474293580 2077 2 0.0962927298988926 RFvsST 403634444 593788532 190154089 no 7622.86210617933 TraesCS1A01G278600 chr1A_474293232 chr1A 474293232 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 474291504 474293580 2077 2 0.0962927298988926 RFvsST 403634444 593788532 190154089 no 7622.86210617933 TraesCS1A01G278900 chr1A_474450401 chr1A 474450401 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 474450017 474451400 1384 2 0.144508670520231 RFvsST 403634444 593788532 190154089 no 158.599227522865 TraesCS1A01G278900 chr1A_474449932 chr1A 474449932 C G C G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 474450017 474451400 1384 2 0.144508670520231 RFvsST 403634444 593788532 190154089 no 158.599227522865 TraesCS1A01G279000 chr1A_474642805 chr1A 474642805 G G C C 4 synonymous_variant LOW transcript unique_Triplet 474640687 474644247 3561 1 0.02808199943836 RFvsST 403634444 593788532 190154089 no 42.3830572582226 TraesCS1A01G279100 chr1A_474703087 chr1A 474703087 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 474699640 474702948 3309 3 0.0906618313689937 RFvsST 403634444 593788532 190154089 no 1913.51412099836 TraesCS1A01G279100 chr1A_474700941 chr1A 474700941 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 474699640 474702948 3309 3 0.0906618313689937 RFvsST 403634444 593788532 190154089 no 1913.51412099836 TraesCS1A01G279100 chr1A_474700979 chr1A 474700979 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 474699640 474702948 3309 3 0.0906618313689937 RFvsST 403634444 593788532 190154089 no 1913.51412099836 TraesCS1A01G280300 chr1A_477734356 chr1A 477734356 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 477730922 477734655 3734 1 0.0267809319764328 RFvsST 403634444 593788532 190154089 no 48.1306277017783 TraesCS1A01G280400 chr1A_477736096 chr1A 477736096 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 477735712 477739169 3458 1 0.0289184499710815 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G280500 chr1A_478258445 chr1A 478258445 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 478256982 478258640 1659 3 0.180831826401447 RFvsST 403634444 593788532 190154089 no 427.538093890676 TraesCS1A01G280500 chr1A_478258175 chr1A 478258175 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 478256982 478258640 1659 3 0.180831826401447 RFvsST 403634444 593788532 190154089 no 427.538093890676 TraesCS1A01G280500 chr1A_478258493 chr1A 478258493 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 478256982 478258640 1659 3 0.180831826401447 RFvsST 403634444 593788532 190154089 no 427.538093890676 TraesCS1A01G281300 chr1A_479818645 chr1A 479818645 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 479817977 479819604 1628 2 0.122850122850123 RFvsST 403634444 593788532 190154089 no 524.931043497795 TraesCS1A01G281300 chr1A_479818138 chr1A 479818138 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 479817977 479819604 1628 2 0.122850122850123 RFvsST 403634444 593788532 190154089 no 524.931043497795 TraesCS1A01G281400 chr1A_479840228 chr1A 479840228 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 479827961 479840208 12248 1 0.00816459830176355 RFvsST 403634444 593788532 190154089 no 17.1612445915954 TraesCS1A01G281500 chr1A_479835281 chr1A 479835281 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 479833927 479835158 1232 1 0.0811688311688312 RFvsST 403634444 593788532 190154089 no 64.8716701976664 TraesCS1A01G281800 chr1A_480546783 chr1A 480546783 C C A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 480546701 480549913 3213 1 0.0311235605353252 RFvsST 403634444 593788532 190154089 no 216.975159480605 TraesCS1A01G283200 chr1A_480833753 chr1A 480833753 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 480827330 480830530 3201 4 0.124960949703218 RFvsST 403634444 593788532 190154089 no 11.9675208772757 TraesCS1A01G283200 chr1A_480831000 chr1A 480831000 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 480827330 480830530 3201 4 0.124960949703218 RFvsST 403634444 593788532 190154089 no 11.9675208772757 TraesCS1A01G283200 chr1A_480828752 chr1A 480828752 T T C C 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 480827330 480830530 3201 4 0.124960949703218 RFvsST 403634444 593788532 190154089 no 11.9675208772757 TraesCS1A01G283200 chr1A_480830446 chr1A 480830446 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 480827330 480830530 3201 4 0.124960949703218 RFvsST 403634444 593788532 190154089 no 11.9675208772757 TraesCS1A01G283800 chr1A_481651371 chr1A 481651371 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 481648099 481654921 6823 3 0.0439689286237725 RFvsST 403634444 593788532 190154089 no 1308.07150269674 TraesCS1A01G283800 chr1A_481655155 chr1A 481655155 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 481648099 481654921 6823 3 0.0439689286237725 RFvsST 403634444 593788532 190154089 no 1308.07150269674 TraesCS1A01G283800 chr1A_481649751 chr1A 481649751 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 481648099 481654921 6823 3 0.0439689286237725 RFvsST 403634444 593788532 190154089 no 1308.07150269674 TraesCS1A01G284000 chr1A_481691783 chr1A 481691783 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 481690855 481703113 12259 1 0.00815727220817359 RFvsST 403634444 593788532 190154089 no 83.829377634851 TraesCS1A01G285000 chr1A_482337612 chr1A 482337612 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 482335991 482338978 2988 2 0.0669344042838019 RFvsST 403634444 593788532 190154089 no 212.059462088276 TraesCS1A01G285000 chr1A_482336474 chr1A 482336474 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 482335991 482338978 2988 2 0.0669344042838019 RFvsST 403634444 593788532 190154089 no 212.059462088276 TraesCS1A01G286200 chr1A_483033325 chr1A 483033325 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 483026685 483029769 3085 1 0.0324149108589951 RFvsST 403634444 593788532 190154089 no 168.478945138836 TraesCS1A01G286300 chr1A_483033501 chr1A 483033501 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 483033468 483034064 597 1 0.16750418760469 RFvsST 403634444 593788532 190154089 no 11.8912569189346 TraesCS1A01G286500 chr1A_483195381 chr1A 483195381 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 483195548 483196867 1320 4 0.303030303030303 RFvsST 403634444 593788532 190154089 no 133.20209366575 TraesCS1A01G286500 chr1A_483196528 chr1A 483196528 T T G G 4 missense_variant MODERATE transcript non_Triplet 483195548 483196867 1320 4 0.303030303030303 RFvsST 403634444 593788532 190154089 no 133.20209366575 TraesCS1A01G286500 chr1A_483196427 chr1A 483196427 G G A A 4 synonymous_variant LOW transcript non_Triplet 483195548 483196867 1320 4 0.303030303030303 RFvsST 403634444 593788532 190154089 no 133.20209366575 TraesCS1A01G286500 chr1A_483195877 chr1A 483195877 T C T C 3 missense_variant MODERATE transcript non_Triplet 483195548 483196867 1320 4 0.303030303030303 RFvsST 403634444 593788532 190154089 no 133.20209366575 TraesCS1A01G287400 chr1A_484335332 chr1A 484335332 A G A G 3 synonymous_variant LOW transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287400 chr1A_484335836 chr1A 484335836 A A T T 4 synonymous_variant LOW transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287400 chr1A_484335968 chr1A 484335968 A G A G 3 synonymous_variant LOW transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287400 chr1A_484335555 chr1A 484335555 C T C T 3 missense_variant MODERATE transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287400 chr1A_484334705 chr1A 484334705 T A T A 3 synonymous_variant LOW transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287400 chr1A_484336869 chr1A 484336869 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 484329229 484336606 7378 6 0.0813228517213337 RFvsST 403634444 593788532 190154089 no 696.868243484344 TraesCS1A01G287500 chr1A_485000049 chr1A 485000049 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 484998886 485000259 1374 1 0.0727802037845706 RFvsST 403634444 593788532 190154089 no 86.0253544063421 TraesCS1A01G287600 chr1A_485005011 chr1A 485005011 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 485002248 485010334 8087 1 0.0123655249165327 RFvsST 403634444 593788532 190154089 no 272.749082274938 TraesCS1A01G288200 chr1A_485343139 chr1A 485343139 C A C A 3 missense_variant MODERATE transcript non_Triplet 485340616 485343945 3330 3 0.0900900900900901 RFvsST 403634444 593788532 190154089 no 159.099933260803 TraesCS1A01G288200 chr1A_485341418 chr1A 485341418 T C T C 3 missense_variant MODERATE transcript non_Triplet 485340616 485343945 3330 3 0.0900900900900901 RFvsST 403634444 593788532 190154089 no 159.099933260803 TraesCS1A01G288200 chr1A_485343246 chr1A 485343246 A G A G 3 synonymous_variant LOW transcript non_Triplet 485340616 485343945 3330 3 0.0900900900900901 RFvsST 403634444 593788532 190154089 no 159.099933260803 TraesCS1A01G288400 chr1A_485353464 chr1A 485353464 G G A A 4 missense_variant MODERATE transcript unique_Triplet 485353384 485357481 4098 5 0.122010736944851 RFvsST 403634444 593788532 190154089 no 687.988967814877 TraesCS1A01G288400 chr1A_485357107 chr1A 485357107 C C A A 4 missense_variant MODERATE transcript unique_Triplet 485353384 485357481 4098 5 0.122010736944851 RFvsST 403634444 593788532 190154089 no 687.988967814877 TraesCS1A01G288400 chr1A_485356187 chr1A 485356187 C C T T 4 synonymous_variant LOW transcript unique_Triplet 485353384 485357481 4098 5 0.122010736944851 RFvsST 403634444 593788532 190154089 no 687.988967814877 TraesCS1A01G288400 chr1A_485356417 chr1A 485356417 C T C T 3 missense_variant MODERATE transcript unique_Triplet 485353384 485357481 4098 5 0.122010736944851 RFvsST 403634444 593788532 190154089 no 687.988967814877 TraesCS1A01G288400 chr1A_485353656 chr1A 485353656 C C T T 4 missense_variant MODERATE transcript unique_Triplet 485353384 485357481 4098 5 0.122010736944851 RFvsST 403634444 593788532 190154089 no 687.988967814877 TraesCS1A01G288600 chr1A_485558945 chr1A 485558945 C C G G 4 synonymous_variant LOW transcript unique_Triplet 485558374 485566136 7763 2 0.0257632358624243 RFvsST 403634444 593788532 190154089 no 317.593549640171 TraesCS1A01G288600 chr1A_485561316 chr1A 485561316 A A G G 4 missense_variant MODERATE transcript unique_Triplet 485558374 485566136 7763 2 0.0257632358624243 RFvsST 403634444 593788532 190154089 no 317.593549640171 TraesCS1A01G288700 chr1A_486052322 chr1A 486052322 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486042256 486050124 7869 2 0.025416190113102 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G288700 chr1A_486052293 chr1A 486052293 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486042256 486050124 7869 2 0.025416190113102 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G288800 chr1A_486054456 chr1A 486054456 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 486052407 486054449 2043 1 0.0489476260401371 RFvsST 403634444 593788532 190154089 no 87.2171246397759 TraesCS1A01G288900 chr1A_486331195 chr1A 486331195 T T C C 4 synonymous_variant LOW transcript unique_Triplet 486330977 486333628 2652 1 0.0377073906485671 RFvsST 403634444 593788532 190154089 no 143.700095310092 TraesCS1A01G289000 chr1A_486341511 chr1A 486341511 A G A G 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 486339167 486342758 3592 1 0.0278396436525612 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G289300 chr1A_486663084 chr1A 486663084 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 486663234 486663428 195 1 0.512820512820513 RFvsST 403634444 593788532 190154089 no 38.0827627860818 TraesCS1A01G290100 chr1A_486897163 chr1A 486897163 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 486896765 486897070 306 1 0.326797385620915 RFvsST 403634444 593788532 190154089 no 167.39757000013 TraesCS1A01G290500 chr1A_487017991 chr1A 487017991 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 487011724 487019288 7565 3 0.0396563119629874 RFvsST 403634444 593788532 190154089 no 85.3085034810242 TraesCS1A01G290500 chr1A_487012029 chr1A 487012029 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 487011724 487019288 7565 3 0.0396563119629874 RFvsST 403634444 593788532 190154089 no 85.3085034810242 TraesCS1A01G290500 chr1A_487015151 chr1A 487015151 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 487011724 487019288 7565 3 0.0396563119629874 RFvsST 403634444 593788532 190154089 no 85.3085034810242 TraesCS1A01G291200 chr1A_487464371 chr1A 487464371 T C T C 3 missense_variant MODERATE transcript non_Triplet 487463240 487466276 3037 1 0.032927230819888 RFvsST 403634444 593788532 190154089 no 82.5763511195032 TraesCS1A01G291400 chr1A_487492452 chr1A 487492452 A A G G 4 synonymous_variant LOW transcript unique_Triplet 487485917 487492936 7020 3 0.0427350427350427 RFvsST 403634444 593788532 190154089 no 81.1129283551529 TraesCS1A01G291400 chr1A_487492475 chr1A 487492475 G G C C 4 missense_variant MODERATE transcript unique_Triplet 487485917 487492936 7020 3 0.0427350427350427 RFvsST 403634444 593788532 190154089 no 81.1129283551529 TraesCS1A01G291400 chr1A_487492811 chr1A 487492811 A A G G 4 synonymous_variant LOW transcript unique_Triplet 487485917 487492936 7020 3 0.0427350427350427 RFvsST 403634444 593788532 190154089 no 81.1129283551529 TraesCS1A01G292100 chr1A_487732513 chr1A 487732513 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487733461 chr1A 487733461 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487728865 chr1A 487728865 T T G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487731620 chr1A 487731620 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487731184 chr1A 487731184 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487728834 chr1A 487728834 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487728969 chr1A 487728969 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487728851 chr1A 487728851 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292100 chr1A_487728867 chr1A 487728867 C C A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 487728663 487734154 5492 9 0.163874726875455 RFvsST 403634444 593788532 190154089 no 410.873817944073 TraesCS1A01G292400 chr1A_488073329 chr1A 488073329 C C T T 4 synonymous_variant LOW transcript non_Triplet 488071523 488073349 1827 1 0.0547345374931582 RFvsST 403634444 593788532 190154089 no 53.3377542356662 TraesCS1A01G293500 chr1A_488623179 chr1A 488623179 A A G G 4 synonymous_variant LOW transcript non_Triplet 488621003 488623316 2314 4 0.17286084701815 RFvsST 403634444 593788532 190154089 no 61.6905148741212 TraesCS1A01G293500 chr1A_488624053 chr1A 488624053 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 488621003 488623316 2314 4 0.17286084701815 RFvsST 403634444 593788532 190154089 no 61.6905148741212 TraesCS1A01G293500 chr1A_488624251 chr1A 488624251 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 488621003 488623316 2314 4 0.17286084701815 RFvsST 403634444 593788532 190154089 no 61.6905148741212 TraesCS1A01G293500 chr1A_488624189 chr1A 488624189 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 488621003 488623316 2314 4 0.17286084701815 RFvsST 403634444 593788532 190154089 no 61.6905148741212 TraesCS1A01G295300 chr1A_490413018 chr1A 490413018 A T A T 3 intron_variant MODIFIER transcript nonUnique_Triplet 490411623 490414146 2524 4 0.158478605388273 RFvsST 403634444 593788532 190154089 no 390.579532562726 TraesCS1A01G295300 chr1A_490412827 chr1A 490412827 C A C A 3 intron_variant MODIFIER transcript nonUnique_Triplet 490411623 490414146 2524 4 0.158478605388273 RFvsST 403634444 593788532 190154089 no 390.579532562726 TraesCS1A01G295300 chr1A_490411578 chr1A 490411578 A C A C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 490411623 490414146 2524 4 0.158478605388273 RFvsST 403634444 593788532 190154089 no 390.579532562726 TraesCS1A01G295300 chr1A_490411697 chr1A 490411697 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 490411623 490414146 2524 4 0.158478605388273 RFvsST 403634444 593788532 190154089 no 390.579532562726 TraesCS1A01G296300 chr1A_491152553 chr1A 491152553 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 491148752 491152881 4130 1 0.0242130750605327 RFvsST 403634444 593788532 190154089 no 59.6198809063151 TraesCS1A01G297000 chr1A_492125141 chr1A 492125141 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 492124046 492128662 4617 4 0.0866363439462855 RFvsST 403634444 593788532 190154089 no 59.5914577631815 TraesCS1A01G297000 chr1A_492126488 chr1A 492126488 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 492124046 492128662 4617 4 0.0866363439462855 RFvsST 403634444 593788532 190154089 no 59.5914577631815 TraesCS1A01G297000 chr1A_492123959 chr1A 492123959 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 492124046 492128662 4617 4 0.0866363439462855 RFvsST 403634444 593788532 190154089 no 59.5914577631815 TraesCS1A01G297000 chr1A_492124153 chr1A 492124153 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 492124046 492128662 4617 4 0.0866363439462855 RFvsST 403634444 593788532 190154089 no 59.5914577631815 TraesCS1A01G298200 chr1A_493216614 chr1A 493216614 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 493217528 493219532 2005 1 0.0498753117206982 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G298900 chr1A_493819901 chr1A 493819901 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 493815727 493820385 4659 4 0.08585533376261 RFvsST 403634444 593788532 190154089 no 394.417052432106 TraesCS1A01G298900 chr1A_493820290 chr1A 493820290 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 493815727 493820385 4659 4 0.08585533376261 RFvsST 403634444 593788532 190154089 no 394.417052432106 TraesCS1A01G298900 chr1A_493819921 chr1A 493819921 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 493815727 493820385 4659 4 0.08585533376261 RFvsST 403634444 593788532 190154089 no 394.417052432106 TraesCS1A01G298900 chr1A_493820003 chr1A 493820003 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 493815727 493820385 4659 4 0.08585533376261 RFvsST 403634444 593788532 190154089 no 394.417052432106 TraesCS1A01G299500 chr1A_494449183 chr1A 494449183 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 494442819 494448029 5211 1 0.0191901746305891 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G299600 chr1A_494450453 chr1A 494450453 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 494450193 494451611 1419 1 0.0704721634954193 RFvsST 403634444 593788532 190154089 no 59.6696023557179 TraesCS1A01G300300 chr1A_495284524 chr1A 495284524 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 495284357 495284829 473 1 0.211416490486258 RFvsST 403634444 593788532 190154089 no 23.3403964822239 TraesCS1A01G302900 chr1A_496476758 chr1A 496476758 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 496476849 496477138 290 1 0.344827586206897 RFvsST 403634444 593788532 190154089 no 90.107189745547 TraesCS1A01G304200 chr1A_497508137 chr1A 497508137 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 497504057 497509046 4990 5 0.100200400801603 RFvsST 403634444 593788532 190154089 no 41.8513089981511 TraesCS1A01G304200 chr1A_497508144 chr1A 497508144 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 497504057 497509046 4990 5 0.100200400801603 RFvsST 403634444 593788532 190154089 no 41.8513089981511 TraesCS1A01G304200 chr1A_497507757 chr1A 497507757 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 497504057 497509046 4990 5 0.100200400801603 RFvsST 403634444 593788532 190154089 no 41.8513089981511 TraesCS1A01G304200 chr1A_497507501 chr1A 497507501 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 497504057 497509046 4990 5 0.100200400801603 RFvsST 403634444 593788532 190154089 no 41.8513089981511 TraesCS1A01G304200 chr1A_497507650 chr1A 497507650 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 497504057 497509046 4990 5 0.100200400801603 RFvsST 403634444 593788532 190154089 no 41.8513089981511 TraesCS1A01G305200 chr1A_497868176 chr1A 497868176 T G T G 3 synonymous_variant LOW transcript unique_Triplet 497862939 497868355 5417 2 0.0369208048735462 RFvsST 403634444 593788532 190154089 no 30.4447085088084 TraesCS1A01G305200 chr1A_497865347 chr1A 497865347 T C T C 3 missense_variant MODERATE transcript unique_Triplet 497862939 497868355 5417 2 0.0369208048735462 RFvsST 403634444 593788532 190154089 no 30.4447085088084 TraesCS1A01G305300 chr1A_497902351 chr1A 497902351 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 497902268 497902698 431 1 0.232018561484919 RFvsST 403634444 593788532 190154089 no 35.5353669300217 TraesCS1A01G305400 chr1A_498047896 chr1A 498047896 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 498047045 498047740 696 1 0.14367816091954 RFvsST 403634444 593788532 190154089 no 54.9554678837644 TraesCS1A01G305500 chr1A_498048808 chr1A 498048808 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 498048728 498050643 1916 1 0.0521920668058455 RFvsST 403634444 593788532 190154089 no 211.466068759305 TraesCS1A01G305700 chr1A_498141736 chr1A 498141736 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 498138875 498141981 3107 2 0.0643707756678468 RFvsST 403634444 593788532 190154089 no 118.871058008723 TraesCS1A01G305700 chr1A_498141767 chr1A 498141767 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 498138875 498141981 3107 2 0.0643707756678468 RFvsST 403634444 593788532 190154089 no 118.871058008723 TraesCS1A01G305800 chr1A_498166713 chr1A 498166713 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 498163906 498167778 3873 1 0.0258197779499096 RFvsST 403634444 593788532 190154089 no 111.650264820725 TraesCS1A01G305900 chr1A_498167874 chr1A 498167874 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 498170216 498172827 2612 1 0.0382848392036753 RFvsST 403634444 593788532 190154089 no 7.41896381139156 TraesCS1A01G306200 chr1A_498450977 chr1A 498450977 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 498451494 498454124 2631 3 0.114025085518814 RFvsST 403634444 593788532 190154089 no 274.683241611411 TraesCS1A01G306200 chr1A_498450998 chr1A 498450998 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 498451494 498454124 2631 3 0.114025085518814 RFvsST 403634444 593788532 190154089 no 274.683241611411 TraesCS1A01G306200 chr1A_498451388 chr1A 498451388 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 498451494 498454124 2631 3 0.114025085518814 RFvsST 403634444 593788532 190154089 no 274.683241611411 TraesCS1A01G306500 chr1A_498596677 chr1A 498596677 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 498592650 498595124 2475 1 0.0404040404040404 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G307300 chr1A_498807548 chr1A 498807548 T C T C 3 synonymous_variant LOW transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498807151 chr1A 498807151 G A G A 3 missense_variant MODERATE transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498807323 chr1A 498807323 T C T C 3 synonymous_variant LOW transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498811477 chr1A 498811477 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498807887 chr1A 498807887 A G A G 3 synonymous_variant LOW transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498811359 chr1A 498811359 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307300 chr1A_498808399 chr1A 498808399 C G C G 3 missense_variant MODERATE transcript unique_Triplet 498806861 498809059 2199 7 0.318326512050932 RFvsST 403634444 593788532 190154089 no 176.461074349304 TraesCS1A01G307700 chr1A_499189893 chr1A 499189893 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 499183893 499190129 6237 2 0.0320666987333654 RFvsST 403634444 593788532 190154089 no 186.53661126195 TraesCS1A01G307700 chr1A_499189898 chr1A 499189898 A C A C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 499183893 499190129 6237 2 0.0320666987333654 RFvsST 403634444 593788532 190154089 no 186.53661126195 TraesCS1A01G307800 chr1A_499194677 chr1A 499194677 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499196154 chr1A 499196154 G T G T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499195395 chr1A 499195395 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499194678 chr1A 499194678 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499195451 chr1A 499195451 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499196217 chr1A 499196217 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499196135 chr1A 499196135 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G307800 chr1A_499196143 chr1A 499196143 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499194625 499195695 1071 8 0.746965452847806 RFvsST 403634444 593788532 190154089 no 319.792200512958 TraesCS1A01G308000 chr1A_499446989 chr1A 499446989 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499443193 499445394 2202 1 0.0454132606721163 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G308100 chr1A_499450423 chr1A 499450423 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 499447147 499450453 3307 2 0.0604777744179014 RFvsST 403634444 593788532 190154089 no 124.665401757075 TraesCS1A01G308100 chr1A_499447976 chr1A 499447976 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 499447147 499450453 3307 2 0.0604777744179014 RFvsST 403634444 593788532 190154089 no 124.665401757075 TraesCS1A01G308400 chr1A_499634564 chr1A 499634564 G C G C 3 missense_variant MODERATE transcript unique_Triplet 499632186 499635199 3014 1 0.033178500331785 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G308500 chr1A_499735918 chr1A 499735918 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 499735909 499736991 1083 1 0.0923361034164358 RFvsST 403634444 593788532 190154089 no 999.543742381284 TraesCS1A01G308700 chr1A_499784838 chr1A 499784838 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 499783448 499783906 459 3 0.65359477124183 RFvsST 403634444 593788532 190154089 no 60.1838729698343 TraesCS1A01G308700 chr1A_499784782 chr1A 499784782 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 499783448 499783906 459 3 0.65359477124183 RFvsST 403634444 593788532 190154089 no 60.1838729698343 TraesCS1A01G308700 chr1A_499783382 chr1A 499783382 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 499783448 499783906 459 3 0.65359477124183 RFvsST 403634444 593788532 190154089 no 60.1838729698343 TraesCS1A01G308900 chr1A_499795443 chr1A 499795443 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 499795440 499798283 2844 2 0.070323488045007 RFvsST 403634444 593788532 190154089 no 76.0231514879453 TraesCS1A01G308900 chr1A_499795456 chr1A 499795456 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 499795440 499798283 2844 2 0.070323488045007 RFvsST 403634444 593788532 190154089 no 76.0231514879453 TraesCS1A01G309200 chr1A_499983164 chr1A 499983164 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 499979593 499981785 2193 2 0.0911992704058368 RFvsST 403634444 593788532 190154089 no 258.929148300068 TraesCS1A01G309200 chr1A_499983033 chr1A 499983033 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 499979593 499981785 2193 2 0.0911992704058368 RFvsST 403634444 593788532 190154089 no 258.929148300068 TraesCS1A01G309600 chr1A_500560042 chr1A 500560042 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500560082 500562010 1929 5 0.259201658890617 RFvsST 403634444 593788532 190154089 no 57.6679164929014 TraesCS1A01G309600 chr1A_500562843 chr1A 500562843 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 500560082 500562010 1929 5 0.259201658890617 RFvsST 403634444 593788532 190154089 no 57.6679164929014 TraesCS1A01G309600 chr1A_500560401 chr1A 500560401 C C A A 4 missense_variant MODERATE transcript unique_Triplet 500560082 500562010 1929 5 0.259201658890617 RFvsST 403634444 593788532 190154089 no 57.6679164929014 TraesCS1A01G309600 chr1A_500560457 chr1A 500560457 G G A A 4 missense_variant MODERATE transcript unique_Triplet 500560082 500562010 1929 5 0.259201658890617 RFvsST 403634444 593788532 190154089 no 57.6679164929014 TraesCS1A01G309600 chr1A_500560465 chr1A 500560465 G G C C 4 synonymous_variant LOW transcript unique_Triplet 500560082 500562010 1929 5 0.259201658890617 RFvsST 403634444 593788532 190154089 no 57.6679164929014 TraesCS1A01G309700 chr1A_500563428 chr1A 500563428 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 500562909 500565276 2368 1 0.0422297297297297 RFvsST 403634444 593788532 190154089 no 71.7371363314769 TraesCS1A01G310700 chr1A_501706711 chr1A 501706711 T C T C 3 synonymous_variant LOW transcript unique_Triplet 501702108 501707597 5490 1 0.0182149362477231 RFvsST 403634444 593788532 190154089 no 70.5970798216281 TraesCS1A01G311000 chr1A_502679330 chr1A 502679330 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 502677737 502678801 1065 2 0.187793427230047 RFvsST 403634444 593788532 190154089 no 252.012657777396 TraesCS1A01G311000 chr1A_502679435 chr1A 502679435 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 502677737 502678801 1065 2 0.187793427230047 RFvsST 403634444 593788532 190154089 no 252.012657777396 TraesCS1A01G311300 chr1A_502842626 chr1A 502842626 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 502841984 502842710 727 1 0.137551581843191 RFvsST 403634444 593788532 190154089 no 29.6120576409557 TraesCS1A01G311400 chr1A_503308064 chr1A 503308064 G G C C 4 missense_variant MODERATE transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503310152 chr1A 503310152 C T C T 3 synonymous_variant LOW transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503312413 chr1A 503312413 C T C T 3 synonymous_variant LOW transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503314932 chr1A 503314932 G G T T 4 synonymous_variant LOW transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503314926 chr1A 503314926 A A G G 4 synonymous_variant LOW transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503307501 chr1A 503307501 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G311400 chr1A_503313566 chr1A 503313566 A G A G 3 synonymous_variant LOW transcript unique_Triplet 503307432 503315751 8320 7 0.0841346153846154 RFvsST 403634444 593788532 190154089 no 1541.68269075327 TraesCS1A01G312500 chr1A_504398590 chr1A 504398590 C T C T 3 synonymous_variant LOW transcript non_Triplet 504397252 504398719 1468 4 0.272479564032698 RFvsST 403634444 593788532 190154089 no 48.3079754513009 TraesCS1A01G312500 chr1A_504399671 chr1A 504399671 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 504397252 504398719 1468 4 0.272479564032698 RFvsST 403634444 593788532 190154089 no 48.3079754513009 TraesCS1A01G312500 chr1A_504399900 chr1A 504399900 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 504397252 504398719 1468 4 0.272479564032698 RFvsST 403634444 593788532 190154089 no 48.3079754513009 TraesCS1A01G312500 chr1A_504400683 chr1A 504400683 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 504397252 504398719 1468 4 0.272479564032698 RFvsST 403634444 593788532 190154089 no 48.3079754513009 TraesCS1A01G314400 chr1A_506282308 chr1A 506282308 T T C C 4 synonymous_variant LOW transcript unique_Triplet 506282215 506285655 3441 1 0.0290613193839 RFvsST 403634444 593788532 190154089 no 79.5744403041299 TraesCS1A01G314500 chr1A_506294247 chr1A 506294247 T T C C 4 missense_variant MODERATE transcript non_Triplet 506288259 506294277 6019 1 0.0166140554909453 RFvsST 403634444 593788532 190154089 no 47.1229476946173 TraesCS1A01G315100 chr1A_506546340 chr1A 506546340 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 506541050 506542105 1056 1 0.0946969696969697 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G315300 chr1A_506854579 chr1A 506854579 C C G G 4 missense_variant MODERATE transcript unique_Triplet 506854488 506855594 1107 5 0.4516711833785 RFvsST 403634444 593788532 190154089 no 498.34151656399 TraesCS1A01G315300 chr1A_506854540 chr1A 506854540 A A T T 4 missense_variant MODERATE transcript unique_Triplet 506854488 506855594 1107 5 0.4516711833785 RFvsST 403634444 593788532 190154089 no 498.34151656399 TraesCS1A01G315300 chr1A_506855550 chr1A 506855550 T T C C 4 synonymous_variant LOW transcript unique_Triplet 506854488 506855594 1107 5 0.4516711833785 RFvsST 403634444 593788532 190154089 no 498.34151656399 TraesCS1A01G315300 chr1A_506854528 chr1A 506854528 T T G G 4 missense_variant MODERATE transcript unique_Triplet 506854488 506855594 1107 5 0.4516711833785 RFvsST 403634444 593788532 190154089 no 498.34151656399 TraesCS1A01G315300 chr1A_506854760 chr1A 506854760 C C T T 4 missense_variant MODERATE transcript unique_Triplet 506854488 506855594 1107 5 0.4516711833785 RFvsST 403634444 593788532 190154089 no 498.34151656399 TraesCS1A01G315400 chr1A_507001634 chr1A 507001634 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 506998554 507003002 4449 1 0.0224769611148573 RFvsST 403634444 593788532 190154089 no 59.6307254374813 TraesCS1A01G315500 chr1A_507076449 chr1A 507076449 C C A A 4 missense_variant MODERATE transcript unique_Triplet 507076420 507078514 2095 2 0.0954653937947494 RFvsST 403634444 593788532 190154089 no 313.261515525506 TraesCS1A01G315500 chr1A_507078569 chr1A 507078569 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 507076420 507078514 2095 2 0.0954653937947494 RFvsST 403634444 593788532 190154089 no 313.261515525506 TraesCS1A01G315600 chr1A_507079642 chr1A 507079642 C C T T 4 synonymous_variant LOW transcript unique_Triplet 507079531 507084233 4703 3 0.0637890708058686 RFvsST 403634444 593788532 190154089 no 122.511011076451 TraesCS1A01G315600 chr1A_507084205 chr1A 507084205 G G A A 4 missense_variant MODERATE transcript unique_Triplet 507079531 507084233 4703 3 0.0637890708058686 RFvsST 403634444 593788532 190154089 no 122.511011076451 TraesCS1A01G315600 chr1A_507082667 chr1A 507082667 G G A A 4 missense_variant MODERATE transcript unique_Triplet 507079531 507084233 4703 3 0.0637890708058686 RFvsST 403634444 593788532 190154089 no 122.511011076451 TraesCS1A01G315900 chr1A_508153671 chr1A 508153671 G A G A 3 missense_variant MODERATE transcript unique_Triplet 508133863 508153676 19814 1 0.00504693650953871 RFvsST 403634444 593788532 190154089 no 6.24203912709161 TraesCS1A01G317700 chr1A_508961094 chr1A 508961094 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 508962029 508962310 282 2 0.709219858156028 RFvsST 403634444 593788532 190154089 no 34.6959057816928 TraesCS1A01G317700 chr1A_508961856 chr1A 508961856 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 508962029 508962310 282 2 0.709219858156028 RFvsST 403634444 593788532 190154089 no 34.6959057816928 TraesCS1A01G319000 chr1A_510282050 chr1A 510282050 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 510280998 510282209 1212 1 0.0825082508250825 RFvsST 403634444 593788532 190154089 no 35.8001006791047 TraesCS1A01G319100 chr1A_510286513 chr1A 510286513 G G T T 4 synonymous_variant LOW transcript unique_Triplet 510283037 510286761 3725 2 0.0536912751677852 RFvsST 403634444 593788532 190154089 no 42.0512777518019 TraesCS1A01G319100 chr1A_510286576 chr1A 510286576 G A G A 3 synonymous_variant LOW transcript unique_Triplet 510283037 510286761 3725 2 0.0536912751677852 RFvsST 403634444 593788532 190154089 no 42.0512777518019 TraesCS1A01G319400 chr1A_510366683 chr1A 510366683 G G A A 4 synonymous_variant LOW transcript unique_Triplet 510366392 510367420 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 366.411002485544 TraesCS1A01G319400 chr1A_510366402 chr1A 510366402 C T C T 3 missense_variant MODERATE transcript unique_Triplet 510366392 510367420 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 366.411002485544 TraesCS1A01G319400 chr1A_510366245 chr1A 510366245 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 510366392 510367420 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 366.411002485544 TraesCS1A01G319500 chr1A_510373143 chr1A 510373143 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 510373312 510373620 309 1 0.323624595469256 RFvsST 403634444 593788532 190154089 no 63.0968236933541 TraesCS1A01G319600 chr1A_510379603 chr1A 510379603 A A G G 4 synonymous_variant LOW transcript unique_Triplet 510378415 510380091 1677 2 0.119260584376863 RFvsST 403634444 593788532 190154089 no 275.076499059128 TraesCS1A01G319600 chr1A_510378656 chr1A 510378656 T C T C 3 synonymous_variant LOW transcript unique_Triplet 510378415 510380091 1677 2 0.119260584376863 RFvsST 403634444 593788532 190154089 no 275.076499059128 TraesCS1A01G320500 chr1A_511100027 chr1A 511100027 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 511099754 511102727 2974 1 0.0336247478143914 RFvsST 403634444 593788532 190154089 no 442.866868282857 TraesCS1A01G323600 chr1A_514135817 chr1A 514135817 G A G A 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514136129 chr1A 514136129 T T C C 4 synonymous_variant LOW transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514137582 chr1A 514137582 T T C C 4 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514139063 chr1A 514139063 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514137637 chr1A 514137637 C G C G 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514136367 chr1A 514136367 A A G G 4 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514136295 chr1A 514136295 A G A G 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514138345 chr1A 514138345 G C G C 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514136036 chr1A 514136036 G G A A 4 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514138204 chr1A 514138204 C T C T 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323600 chr1A_514138101 chr1A 514138101 G A G A 3 missense_variant MODERATE transcript unique_Triplet 514135811 514138662 2852 11 0.385694249649369 RFvsST 403634444 593788532 190154089 no 644.17870480718 TraesCS1A01G323900 chr1A_514553051 chr1A 514553051 G A G A 3 synonymous_variant LOW transcript unique_Triplet 514551096 514553873 2778 1 0.0359971202303816 RFvsST 403634444 593788532 190154089 no 82.1902922961832 TraesCS1A01G324000 chr1A_514690461 chr1A 514690461 G A G A 3 missense_variant MODERATE transcript unique_Triplet 514690294 514692227 1934 1 0.0517063081695967 RFvsST 403634444 593788532 190154089 no 194.375971939279 TraesCS1A01G324800 chr1A_515553365 chr1A 515553365 T G T G 3 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515554118 chr1A 515554118 G A G A 3 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515549158 chr1A 515549158 C C T T 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515552339 chr1A 515552339 G G T T 4 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515553383 chr1A 515553383 A A G G 4 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515549113 chr1A 515549113 C C T T 4 synonymous_variant LOW transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515554335 chr1A 515554335 G A G A 3 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515546052 chr1A 515546052 C T C T 3 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515554488 chr1A 515554488 C G C G 3 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515551898 chr1A 515551898 G G A A 4 missense_variant MODERATE transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515553706 chr1A 515553706 G G A A 4 synonymous_variant LOW transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G324800 chr1A_515551882 chr1A 515551882 G A G A 3 synonymous_variant LOW transcript unique_Triplet 515542951 515554926 11976 12 0.100200400801603 RFvsST 403634444 593788532 190154089 no 394.026454815446 TraesCS1A01G325400 chr1A_516377103 chr1A 516377103 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 516369809 516372965 3157 1 0.031675641431739 RFvsST 403634444 593788532 190154089 no 145.043642335342 TraesCS1A01G325500 chr1A_516373227 chr1A 516373227 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 516375805 516378310 2506 5 0.19952114924182 RFvsST 403634444 593788532 190154089 no 815.909398493323 TraesCS1A01G325500 chr1A_516378376 chr1A 516378376 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 516375805 516378310 2506 5 0.19952114924182 RFvsST 403634444 593788532 190154089 no 815.909398493323 TraesCS1A01G325500 chr1A_516378456 chr1A 516378456 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 516375805 516378310 2506 5 0.19952114924182 RFvsST 403634444 593788532 190154089 no 815.909398493323 TraesCS1A01G325500 chr1A_516375804 chr1A 516375804 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 516375805 516378310 2506 5 0.19952114924182 RFvsST 403634444 593788532 190154089 no 815.909398493323 TraesCS1A01G325500 chr1A_516377512 chr1A 516377512 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 516375805 516378310 2506 5 0.19952114924182 RFvsST 403634444 593788532 190154089 no 815.909398493323 TraesCS1A01G325800 chr1A_516559537 chr1A 516559537 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 516558739 516562596 3858 3 0.0777604976671851 RFvsST 403634444 593788532 190154089 no 47.9500346839196 TraesCS1A01G325800 chr1A_516560206 chr1A 516560206 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 516558739 516562596 3858 3 0.0777604976671851 RFvsST 403634444 593788532 190154089 no 47.9500346839196 TraesCS1A01G325800 chr1A_516562709 chr1A 516562709 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 516558739 516562596 3858 3 0.0777604976671851 RFvsST 403634444 593788532 190154089 no 47.9500346839196 TraesCS1A01G325900 chr1A_516573408 chr1A 516573408 T T C C 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516568438 chr1A 516568438 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516570938 chr1A 516570938 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516563922 chr1A 516563922 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516564613 chr1A 516564613 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516565932 chr1A 516565932 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G325900 chr1A_516564136 chr1A 516564136 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 516563580 516574296 10717 7 0.0653167864141084 RFvsST 403634444 593788532 190154089 no 988.358855301285 TraesCS1A01G326200 chr1A_516627179 chr1A 516627179 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 516623344 516627105 3762 1 0.026581605528974 RFvsST 403634444 593788532 190154089 no 21.4988833994065 TraesCS1A01G327000 chr1A_516773018 chr1A 516773018 A A T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 516774088 516779741 5654 2 0.0353731871241599 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G327000 chr1A_516772920 chr1A 516772920 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 516774088 516779741 5654 2 0.0353731871241599 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G328400 chr1A_517488179 chr1A 517488179 C C T T 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517482224 chr1A 517482224 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517484028 chr1A 517484028 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517488745 chr1A 517488745 A A G G 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517487780 chr1A 517487780 C C T T 4 synonymous_variant LOW transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517487775 chr1A 517487775 A A G G 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517488082 chr1A 517488082 G G A A 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517488008 chr1A 517488008 C C T T 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517488331 chr1A 517488331 C C G G 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517489581 chr1A 517489581 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517483972 chr1A 517483972 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517486608 chr1A 517486608 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517483346 chr1A 517483346 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517487749 chr1A 517487749 A A G G 4 synonymous_variant LOW transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517482282 chr1A 517482282 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G328400 chr1A_517488899 chr1A 517488899 C C G G 4 missense_variant MODERATE transcript non_Triplet 517486953 517489286 2334 16 0.685518423307626 RFvsST 403634444 593788532 190154089 no 457.558364321349 TraesCS1A01G329100 chr1A_517895050 chr1A 517895050 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 517899838 517900201 364 1 0.274725274725275 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G329200 chr1A_518021331 chr1A 518021331 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 518015429 518021063 5635 4 0.0709849157054126 RFvsST 403634444 593788532 190154089 no 136.535811083559 TraesCS1A01G329200 chr1A_518015796 chr1A 518015796 C T C T 3 missense_variant MODERATE transcript unique_Triplet 518015429 518021063 5635 4 0.0709849157054126 RFvsST 403634444 593788532 190154089 no 136.535811083559 TraesCS1A01G329200 chr1A_518018971 chr1A 518018971 G G C C 4 synonymous_variant LOW transcript unique_Triplet 518015429 518021063 5635 4 0.0709849157054126 RFvsST 403634444 593788532 190154089 no 136.535811083559 TraesCS1A01G329200 chr1A_518019189 chr1A 518019189 T G T G 3 missense_variant MODERATE transcript unique_Triplet 518015429 518021063 5635 4 0.0709849157054126 RFvsST 403634444 593788532 190154089 no 136.535811083559 TraesCS1A01G331900 chr1A_520584481 chr1A 520584481 C T C T 3 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520580300 chr1A 520580300 A A G G 4 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520583985 chr1A 520583985 C C T T 4 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520580262 chr1A 520580262 G G A A 4 synonymous_variant LOW transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520580408 chr1A 520580408 C G C G 3 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520580249 chr1A 520580249 C T C T 3 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G331900 chr1A_520580210 chr1A 520580210 T T A A 4 missense_variant MODERATE transcript unique_Triplet 520579703 520584639 4937 7 0.141786510026332 RFvsST 403634444 593788532 190154089 no 332.38185290307 TraesCS1A01G332200 chr1A_520789261 chr1A 520789261 G T G T 3 synonymous_variant LOW transcript unique_Triplet 520789145 520791773 2629 1 0.0380372765310004 RFvsST 403634444 593788532 190154089 no 983.788556177631 TraesCS1A01G332400 chr1A_520814418 chr1A 520814418 A A T T 4 missense_variant MODERATE transcript unique_Triplet 520810586 520814487 3902 1 0.0256278831368529 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G332600 chr1A_520940129 chr1A 520940129 G C G C 3 missense_variant MODERATE transcript unique_Triplet 520938227 520941012 2786 1 0.0358937544867193 RFvsST 403634444 593788532 190154089 no 366.156395735179 TraesCS1A01G333000 chr1A_521279375 chr1A 521279375 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 521275925 521279186 3262 1 0.0306560392397302 RFvsST 403634444 593788532 190154089 no 46.9172571975343 TraesCS1A01G334700 chr1A_521978001 chr1A 521978001 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 521977632 521979360 1729 3 0.173510699826489 RFvsST 403634444 593788532 190154089 no 349.286794664142 TraesCS1A01G334700 chr1A_521977891 chr1A 521977891 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 521977632 521979360 1729 3 0.173510699826489 RFvsST 403634444 593788532 190154089 no 349.286794664142 TraesCS1A01G334700 chr1A_521978030 chr1A 521978030 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 521977632 521979360 1729 3 0.173510699826489 RFvsST 403634444 593788532 190154089 no 349.286794664142 TraesCS1A01G334900 chr1A_522234599 chr1A 522234599 C C T T 4 synonymous_variant LOW transcript non_Triplet 522229894 522234887 4994 2 0.040048057669203 RFvsST 403634444 593788532 190154089 no 98.1699907534058 TraesCS1A01G334900 chr1A_522234134 chr1A 522234134 C C G G 4 missense_variant MODERATE transcript non_Triplet 522229894 522234887 4994 2 0.040048057669203 RFvsST 403634444 593788532 190154089 no 98.1699907534058 TraesCS1A01G335700 chr1A_522535135 chr1A 522535135 A A G G 4 synonymous_variant LOW transcript non_Triplet 522534051 522535884 1834 1 0.054525627044711 RFvsST 403634444 593788532 190154089 no 373.177631335336 TraesCS1A01G335800 chr1A_522882515 chr1A 522882515 G G A A 4 missense_variant MODERATE transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G335800 chr1A_522882742 chr1A 522882742 G G A A 4 synonymous_variant LOW transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G335800 chr1A_522881590 chr1A 522881590 G G A A 4 stop_gained HIGH transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G335800 chr1A_522881686 chr1A 522881686 T T C C 4 missense_variant MODERATE transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G335800 chr1A_522882050 chr1A 522882050 G G A A 4 missense_variant MODERATE transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G335800 chr1A_522881668 chr1A 522881668 G G A A 4 missense_variant MODERATE transcript non_Triplet 522881486 522882831 1346 6 0.445765230312036 RFvsST 403634444 593788532 190154089 no 194.85778420449 TraesCS1A01G336000 chr1A_522954695 chr1A 522954695 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 522954606 522958694 4089 4 0.0978234287111763 RFvsST 403634444 593788532 190154089 no 145.342860441681 TraesCS1A01G336000 chr1A_522954985 chr1A 522954985 G G A A 4 synonymous_variant LOW transcript unique_Triplet 522954606 522958694 4089 4 0.0978234287111763 RFvsST 403634444 593788532 190154089 no 145.342860441681 TraesCS1A01G336000 chr1A_522958723 chr1A 522958723 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 522954606 522958694 4089 4 0.0978234287111763 RFvsST 403634444 593788532 190154089 no 145.342860441681 TraesCS1A01G336000 chr1A_522955667 chr1A 522955667 G G C C 4 missense_variant MODERATE transcript unique_Triplet 522954606 522958694 4089 4 0.0978234287111763 RFvsST 403634444 593788532 190154089 no 145.342860441681 TraesCS1A01G338200 chr1A_527959214 chr1A 527959214 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 527950450 527955847 5398 1 0.0185253797702853 RFvsST 403634444 593788532 190154089 no 38.674606437528 TraesCS1A01G338300 chr1A_527959445 chr1A 527959445 G G C C 4 missense_variant MODERATE transcript unique_Triplet 527959241 527963105 3865 1 0.0258732212160414 RFvsST 403634444 593788532 190154089 no 4.03160592635021 TraesCS1A01G338400 chr1A_527974854 chr1A 527974854 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 527974245 527974801 557 2 0.359066427289048 RFvsST 403634444 593788532 190154089 no 3145.40893429296 TraesCS1A01G338400 chr1A_527974139 chr1A 527974139 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 527974245 527974801 557 2 0.359066427289048 RFvsST 403634444 593788532 190154089 no 3145.40893429296 TraesCS1A01G338500 chr1A_528064444 chr1A 528064444 G G A A 4 missense_variant MODERATE transcript unique_Triplet 528063699 528064706 1008 1 0.0992063492063492 RFvsST 403634444 593788532 190154089 no 111.893471621544 TraesCS1A01G338900 chr1A_528669192 chr1A 528669192 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 528665942 528674079 8138 4 0.0491521258294421 RFvsST 403634444 593788532 190154089 no 295.329637853817 TraesCS1A01G338900 chr1A_528669193 chr1A 528669193 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 528665942 528674079 8138 4 0.0491521258294421 RFvsST 403634444 593788532 190154089 no 295.329637853817 TraesCS1A01G338900 chr1A_528666184 chr1A 528666184 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 528665942 528674079 8138 4 0.0491521258294421 RFvsST 403634444 593788532 190154089 no 295.329637853817 TraesCS1A01G338900 chr1A_528668864 chr1A 528668864 C C T T 4 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 528665942 528674079 8138 4 0.0491521258294421 RFvsST 403634444 593788532 190154089 no 295.329637853817 TraesCS1A01G339600 chr1A_530173234 chr1A 530173234 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 530171104 530174021 2918 4 0.137080191912269 RFvsST 403634444 593788532 190154089 no 357.775180376389 TraesCS1A01G339600 chr1A_530171766 chr1A 530171766 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 530171104 530174021 2918 4 0.137080191912269 RFvsST 403634444 593788532 190154089 no 357.775180376389 TraesCS1A01G339600 chr1A_530173432 chr1A 530173432 T G T G 3 synonymous_variant LOW transcript nonUnique_Triplet 530171104 530174021 2918 4 0.137080191912269 RFvsST 403634444 593788532 190154089 no 357.775180376389 TraesCS1A01G339600 chr1A_530173758 chr1A 530173758 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 530171104 530174021 2918 4 0.137080191912269 RFvsST 403634444 593788532 190154089 no 357.775180376389 TraesCS1A01G339700 chr1A_530178244 chr1A 530178244 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 530177277 530178267 991 1 0.100908173562059 RFvsST 403634444 593788532 190154089 no 44.7223706013741 TraesCS1A01G339900 chr1A_530211906 chr1A 530211906 A A G G 4 synonymous_variant LOW transcript unique_Triplet 530210971 530217655 6685 4 0.0598354525056096 RFvsST 403634444 593788532 190154089 no 68.9215610724302 TraesCS1A01G339900 chr1A_530214995 chr1A 530214995 T C T C 3 synonymous_variant LOW transcript unique_Triplet 530210971 530217655 6685 4 0.0598354525056096 RFvsST 403634444 593788532 190154089 no 68.9215610724302 TraesCS1A01G339900 chr1A_530213616 chr1A 530213616 G G A A 4 synonymous_variant LOW transcript unique_Triplet 530210971 530217655 6685 4 0.0598354525056096 RFvsST 403634444 593788532 190154089 no 68.9215610724302 TraesCS1A01G339900 chr1A_530211470 chr1A 530211470 T C T C 3 synonymous_variant LOW transcript unique_Triplet 530210971 530217655 6685 4 0.0598354525056096 RFvsST 403634444 593788532 190154089 no 68.9215610724302 TraesCS1A01G340200 chr1A_530513797 chr1A 530513797 A C A C 3 synonymous_variant LOW transcript unique_Triplet 530511955 530515174 3220 1 0.031055900621118 RFvsST 403634444 593788532 190154089 no 92.3487231589589 TraesCS1A01G340400 chr1A_530596108 chr1A 530596108 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 530594354 530600317 5964 3 0.0503018108651912 RFvsST 403634444 593788532 190154089 no 89.0039692554246 TraesCS1A01G340400 chr1A_530594328 chr1A 530594328 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 530594354 530600317 5964 3 0.0503018108651912 RFvsST 403634444 593788532 190154089 no 89.0039692554246 TraesCS1A01G340400 chr1A_530598053 chr1A 530598053 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 530594354 530600317 5964 3 0.0503018108651912 RFvsST 403634444 593788532 190154089 no 89.0039692554246 TraesCS1A01G340600 chr1A_530732099 chr1A 530732099 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 530729041 530731511 2471 1 0.0404694455685957 RFvsST 403634444 593788532 190154089 no 12.7090905120251 TraesCS1A01G341200 chr1A_530884241 chr1A 530884241 T C T C 3 missense_variant MODERATE transcript unique_Triplet 530883682 530884736 1055 4 0.37914691943128 RFvsST 403634444 593788532 190154089 no 175.002062067209 TraesCS1A01G341200 chr1A_530883688 chr1A 530883688 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 530883682 530884736 1055 4 0.37914691943128 RFvsST 403634444 593788532 190154089 no 175.002062067209 TraesCS1A01G341200 chr1A_530884098 chr1A 530884098 G A G A 3 synonymous_variant LOW transcript unique_Triplet 530883682 530884736 1055 4 0.37914691943128 RFvsST 403634444 593788532 190154089 no 175.002062067209 TraesCS1A01G341200 chr1A_530883963 chr1A 530883963 T C T C 3 synonymous_variant LOW transcript unique_Triplet 530883682 530884736 1055 4 0.37914691943128 RFvsST 403634444 593788532 190154089 no 175.002062067209 TraesCS1A01G341700 chr1A_531228488 chr1A 531228488 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 531227649 531237558 9910 2 0.0201816347124117 RFvsST 403634444 593788532 190154089 no 48.8599873517653 TraesCS1A01G341700 chr1A_531229618 chr1A 531229618 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 531227649 531237558 9910 2 0.0201816347124117 RFvsST 403634444 593788532 190154089 no 48.8599873517653 TraesCS1A01G341800 chr1A_531237628 chr1A 531237628 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531239255 531241804 2550 1 0.0392156862745098 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G342500 chr1A_531603893 chr1A 531603893 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 531603663 531607753 4091 2 0.0488878024932779 RFvsST 403634444 593788532 190154089 no 136.146123423549 TraesCS1A01G342500 chr1A_531603796 chr1A 531603796 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 531603663 531607753 4091 2 0.0488878024932779 RFvsST 403634444 593788532 190154089 no 136.146123423549 TraesCS1A01G342900 chr1A_531686279 chr1A 531686279 T C T C 3 missense_variant MODERATE transcript unique_Triplet 531682656 531688347 5692 2 0.0351370344342937 RFvsST 403634444 593788532 190154089 no 152.910968297498 TraesCS1A01G342900 chr1A_531682521 chr1A 531682521 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 531682656 531688347 5692 2 0.0351370344342937 RFvsST 403634444 593788532 190154089 no 152.910968297498 TraesCS1A01G343700 chr1A_532089474 chr1A 532089474 A A T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript nonUnique_Triplet 532089394 532090657 1264 1 0.0791139240506329 RFvsST 403634444 593788532 190154089 no 624.398994951262 TraesCS1A01G344000 chr1A_532252644 chr1A 532252644 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532247085 chr1A 532247085 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532246897 chr1A 532246897 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532253766 chr1A 532253766 A A T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532253086 chr1A 532253086 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532251660 chr1A 532251660 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532248055 chr1A 532248055 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532252587 chr1A 532252587 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344000 chr1A_532251229 chr1A 532251229 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 532249031 532253869 4839 9 0.18598884066956 RFvsST 403634444 593788532 190154089 no 186.980839798166 TraesCS1A01G344300 chr1A_532383287 chr1A 532383287 G G A A 4 intron_variant MODIFIER transcript non_Triplet 532378857 532384899 6043 1 0.0165480721495946 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G346600 chr1A_533140383 chr1A 533140383 C C T T 4 synonymous_variant LOW transcript unique_Triplet 533139904 533140934 1031 1 0.0969932104752667 RFvsST 403634444 593788532 190154089 no 477.048686391303 TraesCS1A01G346700 chr1A_533143227 chr1A 533143227 C C T T 4 missense_variant MODERATE transcript unique_Triplet 533143020 533146082 3063 2 0.0652954619653934 RFvsST 403634444 593788532 190154089 no 6.54779111448107 TraesCS1A01G346700 chr1A_533147776 chr1A 533147776 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 533143020 533146082 3063 2 0.0652954619653934 RFvsST 403634444 593788532 190154089 no 6.54779111448107 TraesCS1A01G347800 chr1A_533461980 chr1A 533461980 A G A G 3 synonymous_variant LOW transcript unique_Triplet 533460900 533462219 1320 2 0.151515151515152 RFvsST 403634444 593788532 190154089 no 33.7457089372773 TraesCS1A01G347800 chr1A_533462133 chr1A 533462133 A G A G 3 synonymous_variant LOW transcript unique_Triplet 533460900 533462219 1320 2 0.151515151515152 RFvsST 403634444 593788532 190154089 no 33.7457089372773 TraesCS1A01G350100 chr1A_535027905 chr1A 535027905 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 535027770 535033042 5273 2 0.0379290726341741 RFvsST 403634444 593788532 190154089 no 326.624203891266 TraesCS1A01G350100 chr1A_535027925 chr1A 535027925 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 535027770 535033042 5273 2 0.0379290726341741 RFvsST 403634444 593788532 190154089 no 326.624203891266 TraesCS1A01G350200 chr1A_535064592 chr1A 535064592 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 535062223 535064479 2257 1 0.0443066016836509 RFvsST 403634444 593788532 190154089 no 2819.73478794033 TraesCS1A01G350500 chr1A_535315602 chr1A 535315602 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 535314691 535318778 4088 3 0.073385518590998 RFvsST 403634444 593788532 190154089 no 94.2730222454606 TraesCS1A01G350500 chr1A_535316496 chr1A 535316496 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 535314691 535318778 4088 3 0.073385518590998 RFvsST 403634444 593788532 190154089 no 94.2730222454606 TraesCS1A01G350500 chr1A_535315342 chr1A 535315342 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 535314691 535318778 4088 3 0.073385518590998 RFvsST 403634444 593788532 190154089 no 94.2730222454606 TraesCS1A01G350700 chr1A_535432250 chr1A 535432250 C C T T 4 synonymous_variant LOW transcript non_Triplet 535429907 535432360 2454 1 0.0407497962510187 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G350900 chr1A_535445590 chr1A 535445590 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 535445236 535445973 738 2 0.2710027100271 RFvsST 403634444 593788532 190154089 no 233.614654697619 TraesCS1A01G350900 chr1A_535445872 chr1A 535445872 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 535445236 535445973 738 2 0.2710027100271 RFvsST 403634444 593788532 190154089 no 233.614654697619 TraesCS1A01G353300 chr1A_536965735 chr1A 536965735 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 536958945 536965650 6706 5 0.0745600954369222 RFvsST 403634444 593788532 190154089 no 168.200417539101 TraesCS1A01G353300 chr1A_536965333 chr1A 536965333 C A C A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 536958945 536965650 6706 5 0.0745600954369222 RFvsST 403634444 593788532 190154089 no 168.200417539101 TraesCS1A01G353300 chr1A_536964237 chr1A 536964237 T A T A 3 splice_region_variant LOW transcript unique_Triplet 536958945 536965650 6706 5 0.0745600954369222 RFvsST 403634444 593788532 190154089 no 168.200417539101 TraesCS1A01G353300 chr1A_536958665 chr1A 536958665 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536958945 536965650 6706 5 0.0745600954369222 RFvsST 403634444 593788532 190154089 no 168.200417539101 TraesCS1A01G353300 chr1A_536963474 chr1A 536963474 G A G A 3 missense_variant MODERATE transcript unique_Triplet 536958945 536965650 6706 5 0.0745600954369222 RFvsST 403634444 593788532 190154089 no 168.200417539101 TraesCS1A01G353800 chr1A_537070425 chr1A 537070425 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 537070054 537070995 942 1 0.106157112526539 RFvsST 403634444 593788532 190154089 no 267.670727588784 TraesCS1A01G354300 chr1A_537352748 chr1A 537352748 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537344748 537347843 3096 2 0.0645994832041344 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G354300 chr1A_537352822 chr1A 537352822 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537344748 537347843 3096 2 0.0645994832041344 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G354400 chr1A_537354700 chr1A 537354700 T T C C 4 missense_variant MODERATE transcript non_Triplet 537354302 537356883 2582 3 0.116189000774593 RFvsST 403634444 593788532 190154089 no 187.631327722025 TraesCS1A01G354400 chr1A_537355984 chr1A 537355984 T T C C 4 synonymous_variant LOW transcript non_Triplet 537354302 537356883 2582 3 0.116189000774593 RFvsST 403634444 593788532 190154089 no 187.631327722025 TraesCS1A01G354400 chr1A_537356566 chr1A 537356566 G G A A 4 synonymous_variant LOW transcript non_Triplet 537354302 537356883 2582 3 0.116189000774593 RFvsST 403634444 593788532 190154089 no 187.631327722025 TraesCS1A01G354500 chr1A_537531238 chr1A 537531238 C C G G 4 missense_variant MODERATE transcript unique_Triplet 537530821 537533259 2439 2 0.0820008200082001 RFvsST 403634444 593788532 190154089 no 68.6241173512476 TraesCS1A01G354500 chr1A_537538204 chr1A 537538204 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 537530821 537533259 2439 2 0.0820008200082001 RFvsST 403634444 593788532 190154089 no 68.6241173512476 TraesCS1A01G354600 chr1A_537538328 chr1A 537538328 T T C C 4 synonymous_variant LOW transcript unique_Triplet 537538304 537541962 3659 3 0.0819896146488112 RFvsST 403634444 593788532 190154089 no 21.4215254435608 TraesCS1A01G354600 chr1A_537539667 chr1A 537539667 G G A A 4 missense_variant MODERATE transcript unique_Triplet 537538304 537541962 3659 3 0.0819896146488112 RFvsST 403634444 593788532 190154089 no 21.4215254435608 TraesCS1A01G354600 chr1A_537538497 chr1A 537538497 G G A A 4 missense_variant MODERATE transcript unique_Triplet 537538304 537541962 3659 3 0.0819896146488112 RFvsST 403634444 593788532 190154089 no 21.4215254435608 TraesCS1A01G354700 chr1A_537543108 chr1A 537543108 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 537543036 537546647 3612 2 0.0553709856035437 RFvsST 403634444 593788532 190154089 no 1088.07961570594 TraesCS1A01G354700 chr1A_537543058 chr1A 537543058 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 537543036 537546647 3612 2 0.0553709856035437 RFvsST 403634444 593788532 190154089 no 1088.07961570594 TraesCS1A01G355200 chr1A_537965047 chr1A 537965047 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 537961462 537965341 3880 1 0.0257731958762887 RFvsST 403634444 593788532 190154089 no 68.8725581267326 TraesCS1A01G355400 chr1A_537973868 chr1A 537973868 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 537969948 537972449 2502 1 0.0399680255795364 RFvsST 403634444 593788532 190154089 no 9.78008611801933 TraesCS1A01G355500 chr1A_537977863 chr1A 537977863 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537973996 537977737 3742 2 0.0534473543559594 RFvsST 403634444 593788532 190154089 no 74.9952242869817 TraesCS1A01G355500 chr1A_537975982 chr1A 537975982 A A T T 4 missense_variant MODERATE transcript unique_Triplet 537973996 537977737 3742 2 0.0534473543559594 RFvsST 403634444 593788532 190154089 no 74.9952242869817 TraesCS1A01G357200 chr1A_539901223 chr1A 539901223 G A G A 3 synonymous_variant LOW transcript unique_Triplet 539900305 539901810 1506 1 0.0664010624169987 RFvsST 403634444 593788532 190154089 no 124.177284749696 TraesCS1A01G357300 chr1A_539971315 chr1A 539971315 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 539964582 539969016 4435 1 0.0225479143179256 RFvsST 403634444 593788532 190154089 no 19.1956712706967 TraesCS1A01G357500 chr1A_540056687 chr1A 540056687 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540056617 chr1A 540056617 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540051810 chr1A 540051810 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540056726 chr1A 540056726 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540056355 chr1A 540056355 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540048458 chr1A 540048458 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357500 chr1A_540051072 chr1A 540051072 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 540048068 540051753 3686 7 0.189907759088443 RFvsST 403634444 593788532 190154089 no 202.485717928092 TraesCS1A01G357900 chr1A_540143911 chr1A 540143911 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540144194 chr1A 540144194 C T C T 3 synonymous_variant LOW transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540150429 chr1A 540150429 T C T C 3 missense_variant MODERATE transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540146970 chr1A 540146970 A G A G 3 missense_variant MODERATE transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540150500 chr1A 540150500 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540143777 chr1A 540143777 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G357900 chr1A_540145112 chr1A 540145112 C T C T 3 missense_variant MODERATE transcript unique_Triplet 540143920 540150468 6549 7 0.106886547564514 RFvsST 403634444 593788532 190154089 no 73.9159771365619 TraesCS1A01G358000 chr1A_540153214 chr1A 540153214 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 540152257 540154708 2452 1 0.0407830342577488 RFvsST 403634444 593788532 190154089 no 73.3811872202867 TraesCS1A01G358600 chr1A_540337212 chr1A 540337212 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 540337131 540339603 2473 2 0.0808734330772341 RFvsST 403634444 593788532 190154089 no 83.5114157085688 TraesCS1A01G358600 chr1A_540337257 chr1A 540337257 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 540337131 540339603 2473 2 0.0808734330772341 RFvsST 403634444 593788532 190154089 no 83.5114157085688 TraesCS1A01G361000 chr1A_541984128 chr1A 541984128 C C A A 4 missense_variant MODERATE transcript unique_Triplet 541984075 541987301 3227 3 0.092965602726991 RFvsST 403634444 593788532 190154089 no 189.342747833206 TraesCS1A01G361000 chr1A_541987229 chr1A 541987229 C C T T 4 synonymous_variant LOW transcript unique_Triplet 541984075 541987301 3227 3 0.092965602726991 RFvsST 403634444 593788532 190154089 no 189.342747833206 TraesCS1A01G361000 chr1A_541987259 chr1A 541987259 T C T C 3 synonymous_variant LOW transcript unique_Triplet 541984075 541987301 3227 3 0.092965602726991 RFvsST 403634444 593788532 190154089 no 189.342747833206 TraesCS1A01G361100 chr1A_541988717 chr1A 541988717 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 541988839 541992272 3434 1 0.029120559114735 RFvsST 403634444 593788532 190154089 no 378.966311127654 TraesCS1A01G361300 chr1A_541997786 chr1A 541997786 T C T C 3 missense_variant MODERATE transcript unique_Triplet 541997623 541998295 673 1 0.148588410104012 RFvsST 403634444 593788532 190154089 no 47.1202280236892 TraesCS1A01G361500 chr1A_542142555 chr1A 542142555 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 542136238 542142539 6302 1 0.0158679784195493 RFvsST 403634444 593788532 190154089 no 10.5649138054467 TraesCS1A01G363800 chr1A_544057999 chr1A 544057999 G A G A 3 missense_variant MODERATE transcript unique_Triplet 544054383 544058518 4136 1 0.0241779497098646 RFvsST 403634444 593788532 190154089 no 306.52292859832 TraesCS1A01G364500 chr1A_544364762 chr1A 544364762 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 544364539 544368983 4445 1 0.0224971878515186 RFvsST 403634444 593788532 190154089 no 199.025106252093 TraesCS1A01G365800 chr1A_544604160 chr1A 544604160 G T G T 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 544603320 544606494 3175 2 0.062992125984252 RFvsST 403634444 593788532 190154089 no 6.13165667181475 TraesCS1A01G365800 chr1A_544604280 chr1A 544604280 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 544603320 544606494 3175 2 0.062992125984252 RFvsST 403634444 593788532 190154089 no 6.13165667181475 TraesCS1A01G369700 chr1A_547311680 chr1A 547311680 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 547311530 547318484 6955 1 0.0143781452192667 RFvsST 403634444 593788532 190154089 no 149.72544548433 TraesCS1A01G370800 chr1A_547966044 chr1A 547966044 A A C C 4 synonymous_variant LOW transcript unique_Triplet 547964048 547967958 3911 2 0.0511378164152391 RFvsST 403634444 593788532 190154089 no 184.956221563221 TraesCS1A01G370800 chr1A_547965988 chr1A 547965988 A A G G 4 missense_variant MODERATE transcript unique_Triplet 547964048 547967958 3911 2 0.0511378164152391 RFvsST 403634444 593788532 190154089 no 184.956221563221 TraesCS1A01G373200 chr1A_549419138 chr1A 549419138 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 549418329 549420889 2561 1 0.0390472471690746 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G374800 chr1A_549846847 chr1A 549846847 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 549837890 549846942 9053 3 0.0331381862366066 RFvsST 403634444 593788532 190154089 no 86.7147312651614 TraesCS1A01G374800 chr1A_549845289 chr1A 549845289 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 549837890 549846942 9053 3 0.0331381862366066 RFvsST 403634444 593788532 190154089 no 86.7147312651614 TraesCS1A01G374800 chr1A_549846677 chr1A 549846677 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 549837890 549846942 9053 3 0.0331381862366066 RFvsST 403634444 593788532 190154089 no 86.7147312651614 TraesCS1A01G375200 chr1A_550109917 chr1A 550109917 T G T G 3 missense_variant MODERATE transcript unique_Triplet 550109650 550111437 1788 2 0.111856823266219 RFvsST 403634444 593788532 190154089 no 422.969431735021 TraesCS1A01G375200 chr1A_550111433 chr1A 550111433 A A G G 4 missense_variant MODERATE transcript unique_Triplet 550109650 550111437 1788 2 0.111856823266219 RFvsST 403634444 593788532 190154089 no 422.969431735021 TraesCS1A01G375800 chr1A_550345127 chr1A 550345127 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 550342974 550344957 1984 1 0.0504032258064516 RFvsST 403634444 593788532 190154089 no 2726.59278796429 TraesCS1A01G375900 chr1A_550422497 chr1A 550422497 G G T T 4 synonymous_variant LOW transcript unique_Triplet 550419590 550422515 2926 3 0.102529049897471 RFvsST 403634444 593788532 190154089 no 61.3591856541112 TraesCS1A01G375900 chr1A_550419488 chr1A 550419488 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 550419590 550422515 2926 3 0.102529049897471 RFvsST 403634444 593788532 190154089 no 61.3591856541112 TraesCS1A01G375900 chr1A_550422485 chr1A 550422485 C C T T 4 synonymous_variant LOW transcript unique_Triplet 550419590 550422515 2926 3 0.102529049897471 RFvsST 403634444 593788532 190154089 no 61.3591856541112 TraesCS1A01G376100 chr1A_550443550 chr1A 550443550 G G A A 4 synonymous_variant LOW transcript unique_Triplet 550442037 550445793 3757 5 0.133084908171413 RFvsST 403634444 593788532 190154089 no 121.673886157574 TraesCS1A01G376100 chr1A_550441969 chr1A 550441969 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550442037 550445793 3757 5 0.133084908171413 RFvsST 403634444 593788532 190154089 no 121.673886157574 TraesCS1A01G376100 chr1A_550446386 chr1A 550446386 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 550442037 550445793 3757 5 0.133084908171413 RFvsST 403634444 593788532 190154089 no 121.673886157574 TraesCS1A01G376100 chr1A_550443998 chr1A 550443998 G G A A 4 synonymous_variant LOW transcript unique_Triplet 550442037 550445793 3757 5 0.133084908171413 RFvsST 403634444 593788532 190154089 no 121.673886157574 TraesCS1A01G376100 chr1A_550442076 chr1A 550442076 A A G G 4 synonymous_variant LOW transcript unique_Triplet 550442037 550445793 3757 5 0.133084908171413 RFvsST 403634444 593788532 190154089 no 121.673886157574 TraesCS1A01G376400 chr1A_550613149 chr1A 550613149 A G A G 3 synonymous_variant LOW transcript unique_Triplet 550611654 550616190 4537 4 0.0881639850121226 RFvsST 403634444 593788532 190154089 no 570.592335817782 TraesCS1A01G376400 chr1A_550611764 chr1A 550611764 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 550611654 550616190 4537 4 0.0881639850121226 RFvsST 403634444 593788532 190154089 no 570.592335817782 TraesCS1A01G376400 chr1A_550613564 chr1A 550613564 T T C C 4 missense_variant MODERATE transcript unique_Triplet 550611654 550616190 4537 4 0.0881639850121226 RFvsST 403634444 593788532 190154089 no 570.592335817782 TraesCS1A01G376400 chr1A_550615735 chr1A 550615735 T T C C 4 missense_variant MODERATE transcript unique_Triplet 550611654 550616190 4537 4 0.0881639850121226 RFvsST 403634444 593788532 190154089 no 570.592335817782 TraesCS1A01G377000 chr1A_550669583 chr1A 550669583 C C A A 4 missense_variant MODERATE transcript non_Triplet 550669384 550669599 216 2 0.925925925925926 RFvsST 403634444 593788532 190154089 no 17.6015298138023 TraesCS1A01G377000 chr1A_550664561 chr1A 550664561 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 550669384 550669599 216 2 0.925925925925926 RFvsST 403634444 593788532 190154089 no 17.6015298138023 TraesCS1A01G378100 chr1A_551051459 chr1A 551051459 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 551049165 551050516 1352 1 0.0739644970414201 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G378200 chr1A_551053313 chr1A 551053313 G G A A 4 synonymous_variant LOW transcript unique_Triplet 551051310 551055402 4093 1 0.0244319569997557 RFvsST 403634444 593788532 190154089 no 110.525001903927 TraesCS1A01G379500 chr1A_551533235 chr1A 551533235 C C G G 4 missense_variant MODERATE transcript unique_Triplet 551530397 551533425 3029 1 0.0330141961043249 RFvsST 403634444 593788532 190154089 no 56.4986778386553 TraesCS1A01G379800 chr1A_551603278 chr1A 551603278 G G A A 4 synonymous_variant LOW transcript unique_Triplet 551601795 551604857 3063 1 0.0326477309826967 RFvsST 403634444 593788532 190154089 no 59.0209097056236 TraesCS1A01G381200 chr1A_551983300 chr1A 551983300 C C A A 4 synonymous_variant LOW transcript unique_Triplet 551982375 551984188 1814 1 0.0551267916207277 RFvsST 403634444 593788532 190154089 no 73.1964764906966 TraesCS1A01G381500 chr1A_552167815 chr1A 552167815 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 552163321 552167750 4430 2 0.0451467268623025 RFvsST 403634444 593788532 190154089 no 31.3903896742935 TraesCS1A01G381500 chr1A_552167734 chr1A 552167734 G G A A 4 missense_variant MODERATE transcript unique_Triplet 552163321 552167750 4430 2 0.0451467268623025 RFvsST 403634444 593788532 190154089 no 31.3903896742935 TraesCS1A01G385400 chr1A_554534821 chr1A 554534821 G G A A 4 synonymous_variant LOW transcript unique_Triplet 554527514 554534895 7382 1 0.0135464643727987 RFvsST 403634444 593788532 190154089 no 163.038113461055 TraesCS1A01G385500 chr1A_554834679 chr1A 554834679 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 554830347 554835264 4918 2 0.0406669377795852 RFvsST 403634444 593788532 190154089 no 29.9793180587995 TraesCS1A01G385500 chr1A_554830265 chr1A 554830265 G G C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 554830347 554835264 4918 2 0.0406669377795852 RFvsST 403634444 593788532 190154089 no 29.9793180587995 TraesCS1A01G389100 chr1A_557155762 chr1A 557155762 G A G A 3 missense_variant MODERATE transcript unique_Triplet 557154396 557155793 1398 2 0.143061516452074 RFvsST 403634444 593788532 190154089 no 90.1860772461849 TraesCS1A01G389100 chr1A_557155109 chr1A 557155109 G G A A 4 synonymous_variant LOW transcript unique_Triplet 557154396 557155793 1398 2 0.143061516452074 RFvsST 403634444 593788532 190154089 no 90.1860772461849 TraesCS1A01G389500 chr1A_557489008 chr1A 557489008 A T A T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 557488984 557491151 2168 3 0.138376383763838 RFvsST 403634444 593788532 190154089 no 341.792681045322 TraesCS1A01G389500 chr1A_557489186 chr1A 557489186 T C T C 3 synonymous_variant LOW transcript non_Triplet 557488984 557491151 2168 3 0.138376383763838 RFvsST 403634444 593788532 190154089 no 341.792681045322 TraesCS1A01G389500 chr1A_557489789 chr1A 557489789 G A G A 3 synonymous_variant LOW transcript non_Triplet 557488984 557491151 2168 3 0.138376383763838 RFvsST 403634444 593788532 190154089 no 341.792681045322 TraesCS1A01G390200 chr1A_557932890 chr1A 557932890 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 557933038 557936961 3924 1 0.0254841997961264 RFvsST 403634444 593788532 190154089 no 93.0023921151339 TraesCS1A01G390300 chr1A_557955540 chr1A 557955540 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 557948010 557952416 4407 3 0.068073519400953 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G390300 chr1A_557955238 chr1A 557955238 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 557948010 557952416 4407 3 0.068073519400953 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G390300 chr1A_557954840 chr1A 557954840 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 557948010 557952416 4407 3 0.068073519400953 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G391000 chr1A_558188813 chr1A 558188813 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558185399 chr1A 558185399 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558188963 chr1A 558188963 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558188825 chr1A 558188825 C A C A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558188799 chr1A 558188799 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558185274 chr1A 558185274 G A G A 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391000 chr1A_558184750 chr1A 558184750 C T C T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript nonUnique_Triplet 558184435 558189171 4737 7 0.147772852016044 RFvsST 403634444 593788532 190154089 no 251.139163824057 TraesCS1A01G391500 chr1A_558507399 chr1A 558507399 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 558500493 558502406 1914 1 0.0522466039707419 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G391600 chr1A_558514317 chr1A 558514317 T C T C 3 missense_variant MODERATE transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558511527 chr1A 558511527 C T C T 3 synonymous_variant LOW transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558507523 chr1A 558507523 G A G A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558509976 chr1A 558509976 C G C G 3 missense_variant MODERATE transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558515558 chr1A 558515558 C T C T 3 missense_variant MODERATE transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558517295 chr1A 558517295 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391600 chr1A_558515681 chr1A 558515681 G T G T 3 missense_variant MODERATE transcript unique_Triplet 558506216 558517137 10922 7 0.0640908258560703 RFvsST 403634444 593788532 190154089 no 253.823894188488 TraesCS1A01G391700 chr1A_558539589 chr1A 558539589 G A G A 3 synonymous_variant LOW transcript non_Triplet 558538124 558541296 3173 3 0.0945477466120391 RFvsST 403634444 593788532 190154089 no 323.89664030169 TraesCS1A01G391700 chr1A_558538486 chr1A 558538486 T C T C 3 missense_variant MODERATE transcript non_Triplet 558538124 558541296 3173 3 0.0945477466120391 RFvsST 403634444 593788532 190154089 no 323.89664030169 TraesCS1A01G391700 chr1A_558539184 chr1A 558539184 C T C T 3 missense_variant MODERATE transcript non_Triplet 558538124 558541296 3173 3 0.0945477466120391 RFvsST 403634444 593788532 190154089 no 323.89664030169 TraesCS1A01G391800 chr1A_558541322 chr1A 558541322 T G T G 3 missense_variant MODERATE transcript non_Triplet 558539923 558541668 1746 2 0.11454753722795 RFvsST 403634444 593788532 190154089 no 23.5394823076401 TraesCS1A01G391800 chr1A_558541318 chr1A 558541318 G A G A 3 synonymous_variant LOW transcript non_Triplet 558539923 558541668 1746 2 0.11454753722795 RFvsST 403634444 593788532 190154089 no 23.5394823076401 TraesCS1A01G391900 chr1A_558550198 chr1A 558550198 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 558550200 558553714 3515 1 0.0284495021337127 RFvsST 403634444 593788532 190154089 no 77.1416745632869 TraesCS1A01G392000 chr1A_558591873 chr1A 558591873 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 558591093 558591609 517 1 0.193423597678917 RFvsST 403634444 593788532 190154089 no 16368.5110008677 TraesCS1A01G392400 chr1A_558977453 chr1A 558977453 C T C T 3 intron_variant MODIFIER transcript nonUnique_Triplet 558976211 558979272 3062 3 0.0979751796211626 RFvsST 403634444 593788532 190154089 no 33.0289891496363 TraesCS1A01G392400 chr1A_558977996 chr1A 558977996 A G A G 3 intron_variant MODIFIER transcript nonUnique_Triplet 558976211 558979272 3062 3 0.0979751796211626 RFvsST 403634444 593788532 190154089 no 33.0289891496363 TraesCS1A01G392400 chr1A_558978393 chr1A 558978393 G A G A 3 intron_variant MODIFIER transcript nonUnique_Triplet 558976211 558979272 3062 3 0.0979751796211626 RFvsST 403634444 593788532 190154089 no 33.0289891496363 TraesCS1A01G397500 chr1A_563183651 chr1A 563183651 G T G T 3 synonymous_variant LOW transcript non_Triplet 563183627 563184094 468 2 0.427350427350427 RFvsST 403634444 593788532 190154089 no 94.4671915522914 TraesCS1A01G397500 chr1A_563183654 chr1A 563183654 G C G C 3 synonymous_variant LOW transcript non_Triplet 563183627 563184094 468 2 0.427350427350427 RFvsST 403634444 593788532 190154089 no 94.4671915522914 TraesCS1A01G400200 chr1A_564278179 chr1A 564278179 T T C C 4 synonymous_variant LOW transcript unique_Triplet 564276705 564279160 2456 3 0.12214983713355 RFvsST 403634444 593788532 190154089 no 63.6382397853367 TraesCS1A01G400200 chr1A_564279191 chr1A 564279191 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 564276705 564279160 2456 3 0.12214983713355 RFvsST 403634444 593788532 190154089 no 63.6382397853367 TraesCS1A01G400200 chr1A_564278703 chr1A 564278703 C C A A 4 missense_variant MODERATE transcript unique_Triplet 564276705 564279160 2456 3 0.12214983713355 RFvsST 403634444 593788532 190154089 no 63.6382397853367 TraesCS1A01G400300 chr1A_564310004 chr1A 564310004 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G400300 chr1A_564305079 chr1A 564305079 T T A A 4 synonymous_variant LOW transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G400300 chr1A_564302528 chr1A 564302528 T T C C 4 missense_variant MODERATE transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G400300 chr1A_564300728 chr1A 564300728 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G400300 chr1A_564300673 chr1A 564300673 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G400300 chr1A_564307706 chr1A 564307706 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 564302173 564309853 7681 6 0.0781148287983335 RFvsST 403634444 593788532 190154089 no 110.701856406081 TraesCS1A01G401300 chr1A_564750854 chr1A 564750854 C G C G 3 missense_variant MODERATE transcript non_Triplet 564749058 564751400 2343 3 0.128040973111396 RFvsST 403634444 593788532 190154089 no 197.271946311774 TraesCS1A01G401300 chr1A_564750497 chr1A 564750497 C A C A 3 missense_variant MODERATE transcript non_Triplet 564749058 564751400 2343 3 0.128040973111396 RFvsST 403634444 593788532 190154089 no 197.271946311774 TraesCS1A01G401300 chr1A_564750633 chr1A 564750633 G G A A 4 synonymous_variant LOW transcript non_Triplet 564749058 564751400 2343 3 0.128040973111396 RFvsST 403634444 593788532 190154089 no 197.271946311774 TraesCS1A01G402200 chr1A_566002268 chr1A 566002268 A G A G 3 synonymous_variant LOW transcript unique_Triplet 565996606 566005601 8996 1 0.0111160515784793 RFvsST 403634444 593788532 190154089 no 92.3691461784326 TraesCS1A01G402400 chr1A_566011016 chr1A 566011016 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 566010065 566015624 5560 2 0.0359712230215827 RFvsST 403634444 593788532 190154089 no 42.4618816686647 TraesCS1A01G402400 chr1A_566011542 chr1A 566011542 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 566010065 566015624 5560 2 0.0359712230215827 RFvsST 403634444 593788532 190154089 no 42.4618816686647 TraesCS1A01G402800 chr1A_566483337 chr1A 566483337 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 566477648 566479568 1921 1 0.0520562207183758 RFvsST 403634444 593788532 190154089 no 99.4102422236986 TraesCS1A01G402900 chr1A_566486023 chr1A 566486023 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 566480413 566482090 1678 1 0.0595947556615018 RFvsST 403634444 593788532 190154089 no 46.7804714734902 TraesCS1A01G403100 chr1A_566497518 chr1A 566497518 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 566491899 566492877 979 1 0.102145045965271 RFvsST 403634444 593788532 190154089 no 72.8724057860428 TraesCS1A01G403200 chr1A_566499838 chr1A 566499838 G G A A 4 synonymous_variant LOW transcript unique_Triplet 566497676 566500308 2633 1 0.0379794910748196 RFvsST 403634444 593788532 190154089 no 207.501944359375 TraesCS1A01G403900 chr1A_567326920 chr1A 567326920 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 567318504 567326918 8415 5 0.05941770647653 RFvsST 403634444 593788532 190154089 no 437.547029976498 TraesCS1A01G403900 chr1A_567321815 chr1A 567321815 A T A T 3 synonymous_variant LOW transcript nonUnique_Triplet 567318504 567326918 8415 5 0.05941770647653 RFvsST 403634444 593788532 190154089 no 437.547029976498 TraesCS1A01G403900 chr1A_567326762 chr1A 567326762 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 567318504 567326918 8415 5 0.05941770647653 RFvsST 403634444 593788532 190154089 no 437.547029976498 TraesCS1A01G403900 chr1A_567322224 chr1A 567322224 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 567318504 567326918 8415 5 0.05941770647653 RFvsST 403634444 593788532 190154089 no 437.547029976498 TraesCS1A01G403900 chr1A_567326606 chr1A 567326606 C C T T 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 567318504 567326918 8415 5 0.05941770647653 RFvsST 403634444 593788532 190154089 no 437.547029976498 TraesCS1A01G404200 chr1A_567634189 chr1A 567634189 T C T C 3 synonymous_variant LOW transcript unique_Triplet 567634063 567634480 418 3 0.717703349282297 RFvsST 403634444 593788532 190154089 no 97.083271341023 TraesCS1A01G404200 chr1A_567634523 chr1A 567634523 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 567634063 567634480 418 3 0.717703349282297 RFvsST 403634444 593788532 190154089 no 97.083271341023 TraesCS1A01G404200 chr1A_567634637 chr1A 567634637 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 567634063 567634480 418 3 0.717703349282297 RFvsST 403634444 593788532 190154089 no 97.083271341023 TraesCS1A01G404300 chr1A_567976320 chr1A 567976320 G A G A 3 missense_variant MODERATE transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567967912 chr1A 567967912 A G A G 3 synonymous_variant LOW transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567974042 chr1A 567974042 T C T C 3 missense_variant MODERATE transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567974041 chr1A 567974041 C T C T 3 synonymous_variant LOW transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567979311 chr1A 567979311 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567968403 chr1A 567968403 A G A G 3 synonymous_variant LOW transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404300 chr1A_567976548 chr1A 567976548 C G C G 3 missense_variant MODERATE transcript non_Triplet 567967616 567979275 11660 7 0.0600343053173242 RFvsST 403634444 593788532 190154089 no 382.100107417828 TraesCS1A01G404900 chr1A_568266305 chr1A 568266305 G G C C 4 missense_variant MODERATE transcript non_Triplet 568266066 568266335 270 3 1.11111111111111 RFvsST 403634444 593788532 190154089 no 24.7995032687443 TraesCS1A01G404900 chr1A_568266095 chr1A 568266095 C C T T 4 synonymous_variant LOW transcript non_Triplet 568266066 568266335 270 3 1.11111111111111 RFvsST 403634444 593788532 190154089 no 24.7995032687443 TraesCS1A01G404900 chr1A_568267094 chr1A 568267094 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 568266066 568266335 270 3 1.11111111111111 RFvsST 403634444 593788532 190154089 no 24.7995032687443 TraesCS1A01G405200 chr1A_568388811 chr1A 568388811 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 568388993 568389259 267 1 0.374531835205993 RFvsST 403634444 593788532 190154089 no 26.4629417385227 TraesCS1A01G405300 chr1A_568393709 chr1A 568393709 G A G A 3 missense_variant MODERATE transcript non_Triplet 568393537 568393803 267 1 0.374531835205993 RFvsST 403634444 593788532 190154089 no 90.0666414756755 TraesCS1A01G405400 chr1A_568394836 chr1A 568394836 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 568398530 568399412 883 1 0.113250283125708 RFvsST 403634444 593788532 190154089 no 107.850685813803 TraesCS1A01G405800 chr1A_568547454 chr1A 568547454 G G A A 4 synonymous_variant LOW transcript non_Triplet 568543689 568547469 3781 4 0.105792118487173 RFvsST 403634444 593788532 190154089 no 56.222231544864 TraesCS1A01G405800 chr1A_568543979 chr1A 568543979 C C T T 4 synonymous_variant LOW transcript non_Triplet 568543689 568547469 3781 4 0.105792118487173 RFvsST 403634444 593788532 190154089 no 56.222231544864 TraesCS1A01G405800 chr1A_568546535 chr1A 568546535 A A G G 4 synonymous_variant LOW transcript non_Triplet 568543689 568547469 3781 4 0.105792118487173 RFvsST 403634444 593788532 190154089 no 56.222231544864 TraesCS1A01G405800 chr1A_568547561 chr1A 568547561 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 568543689 568547469 3781 4 0.105792118487173 RFvsST 403634444 593788532 190154089 no 56.222231544864 TraesCS1A01G407100 chr1A_569468753 chr1A 569468753 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 569466125 569468831 2707 1 0.036941263391208 RFvsST 403634444 593788532 190154089 no 201.169463131871 TraesCS1A01G407600 chr1A_570140648 chr1A 570140648 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 570131700 570140658 8959 1 0.0111619600401831 RFvsST 403634444 593788532 190154089 no 1425.27724236241 TraesCS1A01G407700 chr1A_570140752 chr1A 570140752 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570140756 chr1A 570140756 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570145894 chr1A 570145894 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570140933 chr1A 570140933 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570145493 chr1A 570145493 T T C C 4 missense_variant MODERATE transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570140855 chr1A 570140855 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G407700 chr1A_570142254 chr1A 570142254 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 570142270 570145875 3606 7 0.194120909595119 RFvsST 403634444 593788532 190154089 no 55.253605042777 TraesCS1A01G409100 chr1A_570857235 chr1A 570857235 A A T T 4 missense_variant MODERATE transcript unique_Triplet 570855520 570857375 1856 1 0.0538793103448276 RFvsST 403634444 593788532 190154089 no 69.35208842861 TraesCS1A01G409700 chr1A_571281553 chr1A 571281553 C C T T 4 synonymous_variant LOW transcript unique_Triplet 571281361 571282634 1274 1 0.0784929356357928 RFvsST 403634444 593788532 190154089 no 116.193704083859 TraesCS1A01G409800 chr1A_571291310 chr1A 571291310 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 571287763 571291291 3529 1 0.028336639274582 RFvsST 403634444 593788532 190154089 no 20.5629277510088 TraesCS1A01G410700 chr1A_571788143 chr1A 571788143 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 571787041 571787784 744 1 0.134408602150538 RFvsST 403634444 593788532 190154089 no 20.7722901404715 TraesCS1A01G410800 chr1A_571789641 chr1A 571789641 G G T T 4 synonymous_variant LOW transcript unique_Triplet 571788253 571789889 1637 1 0.0610873549175321 RFvsST 403634444 593788532 190154089 no 186.916340593689 TraesCS1A01G411500 chr1A_572020396 chr1A 572020396 G G A A 4 missense_variant MODERATE transcript unique_Triplet 572020172 572023124 2953 2 0.0677277345072807 RFvsST 403634444 593788532 190154089 no 100.566864795877 TraesCS1A01G411500 chr1A_572022930 chr1A 572022930 C T C T 3 synonymous_variant LOW transcript unique_Triplet 572020172 572023124 2953 2 0.0677277345072807 RFvsST 403634444 593788532 190154089 no 100.566864795877 TraesCS1A01G411600 chr1A_572212903 chr1A 572212903 G T G T 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 572206869 572212962 6094 1 0.0164095831965868 RFvsST 403634444 593788532 190154089 no 246.958587913359 TraesCS1A01G411900 chr1A_572350913 chr1A 572350913 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 572350868 572354300 3433 2 0.0582580833090591 RFvsST 403634444 593788532 190154089 no 1232.7186381462 TraesCS1A01G411900 chr1A_572350933 chr1A 572350933 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 572350868 572354300 3433 2 0.0582580833090591 RFvsST 403634444 593788532 190154089 no 1232.7186381462 TraesCS1A01G412900 chr1A_573068169 chr1A 573068169 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 573060465 573064961 4497 4 0.088948187680676 RFvsST 403634444 593788532 190154089 no 485.385123486788 TraesCS1A01G412900 chr1A_573068232 chr1A 573068232 G G C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 573060465 573064961 4497 4 0.088948187680676 RFvsST 403634444 593788532 190154089 no 485.385123486788 TraesCS1A01G412900 chr1A_573060569 chr1A 573060569 A A T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 573060465 573064961 4497 4 0.088948187680676 RFvsST 403634444 593788532 190154089 no 485.385123486788 TraesCS1A01G412900 chr1A_573060570 chr1A 573060570 T T G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 573060465 573064961 4497 4 0.088948187680676 RFvsST 403634444 593788532 190154089 no 485.385123486788 TraesCS1A01G413300 chr1A_573233513 chr1A 573233513 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 573230413 573233344 2932 3 0.102319236016371 RFvsST 403634444 593788532 190154089 no 60.842413183098 TraesCS1A01G413300 chr1A_573234082 chr1A 573234082 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 573230413 573233344 2932 3 0.102319236016371 RFvsST 403634444 593788532 190154089 no 60.842413183098 TraesCS1A01G413300 chr1A_573233738 chr1A 573233738 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 573230413 573233344 2932 3 0.102319236016371 RFvsST 403634444 593788532 190154089 no 60.842413183098 TraesCS1A01G413700 chr1A_573333368 chr1A 573333368 G G A A 4 missense_variant MODERATE transcript unique_Triplet 573327771 573333709 5939 2 0.0336757029802997 RFvsST 403634444 593788532 190154089 no 70.6674172547254 TraesCS1A01G413700 chr1A_573332774 chr1A 573332774 A A T T 4 synonymous_variant LOW transcript unique_Triplet 573327771 573333709 5939 2 0.0336757029802997 RFvsST 403634444 593788532 190154089 no 70.6674172547254 TraesCS1A01G418300 chr1A_575741002 chr1A 575741002 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 575737262 575741678 4417 1 0.0226398007697532 RFvsST 403634444 593788532 190154089 no 85.3167226660774 TraesCS1A01G421000 chr1A_577473541 chr1A 577473541 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 577468384 577474496 6113 5 0.0817929003762473 RFvsST 403634444 593788532 190154089 no 538.818929271896 TraesCS1A01G421000 chr1A_577474112 chr1A 577474112 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 577468384 577474496 6113 5 0.0817929003762473 RFvsST 403634444 593788532 190154089 no 538.818929271896 TraesCS1A01G421000 chr1A_577468491 chr1A 577468491 T T C C 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript nonUnique_Triplet 577468384 577474496 6113 5 0.0817929003762473 RFvsST 403634444 593788532 190154089 no 538.818929271896 TraesCS1A01G421000 chr1A_577474022 chr1A 577474022 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 577468384 577474496 6113 5 0.0817929003762473 RFvsST 403634444 593788532 190154089 no 538.818929271896 TraesCS1A01G421000 chr1A_577474214 chr1A 577474214 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 577468384 577474496 6113 5 0.0817929003762473 RFvsST 403634444 593788532 190154089 no 538.818929271896 TraesCS1A01G422100 chr1A_577841123 chr1A 577841123 C C T T 4 missense_variant MODERATE transcript unique_Triplet 577841058 577846755 5698 2 0.0351000351000351 RFvsST 403634444 593788532 190154089 no 16.2558894098594 TraesCS1A01G422100 chr1A_577841655 chr1A 577841655 C C T T 4 synonymous_variant LOW transcript unique_Triplet 577841058 577846755 5698 2 0.0351000351000351 RFvsST 403634444 593788532 190154089 no 16.2558894098594 TraesCS1A01G423100 chr1A_578519010 chr1A 578519010 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 578516212 578522067 5856 2 0.0341530054644809 RFvsST 403634444 593788532 190154089 no 428.715857287244 TraesCS1A01G423100 chr1A_578521585 chr1A 578521585 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 578516212 578522067 5856 2 0.0341530054644809 RFvsST 403634444 593788532 190154089 no 428.715857287244 TraesCS1A01G423700 chr1A_578911456 chr1A 578911456 C C T T 4 missense_variant MODERATE transcript unique_Triplet 578911403 578912158 756 3 0.396825396825397 RFvsST 403634444 593788532 190154089 no 78.1086390241213 TraesCS1A01G423700 chr1A_578911682 chr1A 578911682 C C G G 4 synonymous_variant LOW transcript unique_Triplet 578911403 578912158 756 3 0.396825396825397 RFvsST 403634444 593788532 190154089 no 78.1086390241213 TraesCS1A01G423700 chr1A_578911394 chr1A 578911394 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 578911403 578912158 756 3 0.396825396825397 RFvsST 403634444 593788532 190154089 no 78.1086390241213 TraesCS1A01G423800 chr1A_578921022 chr1A 578921022 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 578922238 578922843 606 2 0.33003300330033 RFvsST 403634444 593788532 190154089 no 682.942453677304 TraesCS1A01G423800 chr1A_578919599 chr1A 578919599 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 578922238 578922843 606 2 0.33003300330033 RFvsST 403634444 593788532 190154089 no 682.942453677304 TraesCS1A01G424000 chr1A_578940752 chr1A 578940752 C T C T 3 missense_variant MODERATE transcript non_Triplet 578939697 578941136 1440 3 0.208333333333333 RFvsST 403634444 593788532 190154089 no 131.045674489654 TraesCS1A01G424000 chr1A_578940210 chr1A 578940210 C T C T 3 synonymous_variant LOW transcript non_Triplet 578939697 578941136 1440 3 0.208333333333333 RFvsST 403634444 593788532 190154089 no 131.045674489654 TraesCS1A01G424000 chr1A_578940285 chr1A 578940285 C C G G 4 synonymous_variant LOW transcript non_Triplet 578939697 578941136 1440 3 0.208333333333333 RFvsST 403634444 593788532 190154089 no 131.045674489654 TraesCS1A01G424200 chr1A_579298298 chr1A 579298298 C C T T 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 579296218 579299200 2983 4 0.134093194770365 RFvsST 403634444 593788532 190154089 no 40.361911231279 TraesCS1A01G424200 chr1A_579299146 chr1A 579299146 G G A A 4 synonymous_variant LOW transcript non_Triplet 579296218 579299200 2983 4 0.134093194770365 RFvsST 403634444 593788532 190154089 no 40.361911231279 TraesCS1A01G424200 chr1A_579299339 chr1A 579299339 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 579296218 579299200 2983 4 0.134093194770365 RFvsST 403634444 593788532 190154089 no 40.361911231279 TraesCS1A01G424200 chr1A_579297261 chr1A 579297261 C C T T 4 missense_variant MODERATE transcript non_Triplet 579296218 579299200 2983 4 0.134093194770365 RFvsST 403634444 593788532 190154089 no 40.361911231279 TraesCS1A01G425100 chr1A_580186768 chr1A 580186768 C T C T 3 synonymous_variant LOW transcript unique_Triplet 580183361 580189231 5871 4 0.0681314937830012 RFvsST 403634444 593788532 190154089 no 249.342584414192 TraesCS1A01G425100 chr1A_580186783 chr1A 580186783 C T C T 3 synonymous_variant LOW transcript unique_Triplet 580183361 580189231 5871 4 0.0681314937830012 RFvsST 403634444 593788532 190154089 no 249.342584414192 TraesCS1A01G425100 chr1A_580187096 chr1A 580187096 A G A G 3 synonymous_variant LOW transcript unique_Triplet 580183361 580189231 5871 4 0.0681314937830012 RFvsST 403634444 593788532 190154089 no 249.342584414192 TraesCS1A01G425100 chr1A_580187108 chr1A 580187108 A G A G 3 synonymous_variant LOW transcript unique_Triplet 580183361 580189231 5871 4 0.0681314937830012 RFvsST 403634444 593788532 190154089 no 249.342584414192 TraesCS1A01G425400 chr1A_580446506 chr1A 580446506 G G A A 4 synonymous_variant LOW transcript non_Triplet 580444570 580446533 1964 1 0.0509164969450102 RFvsST 403634444 593788532 190154089 no 66.247869910884 TraesCS1A01G425700 chr1A_580496510 chr1A 580496510 A A G G 4 missense_variant MODERATE transcript unique_Triplet 580492051 580496581 4531 4 0.0882807327300817 RFvsST 403634444 593788532 190154089 no 6.39242264014606 TraesCS1A01G425700 chr1A_580492644 chr1A 580492644 C C T T 4 synonymous_variant LOW transcript unique_Triplet 580492051 580496581 4531 4 0.0882807327300817 RFvsST 403634444 593788532 190154089 no 6.39242264014606 TraesCS1A01G425700 chr1A_580491953 chr1A 580491953 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 580492051 580496581 4531 4 0.0882807327300817 RFvsST 403634444 593788532 190154089 no 6.39242264014606 TraesCS1A01G425700 chr1A_580492758 chr1A 580492758 G G A A 4 missense_variant MODERATE transcript unique_Triplet 580492051 580496581 4531 4 0.0882807327300817 RFvsST 403634444 593788532 190154089 no 6.39242264014606 TraesCS1A01G426700 chr1A_581437987 chr1A 581437987 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 581438178 581440087 1910 1 0.0523560209424084 RFvsST 403634444 593788532 190154089 no 1680.01677363187 TraesCS1A01G426900 chr1A_581543310 chr1A 581543310 T T C C 4 synonymous_variant LOW transcript unique_Triplet 581540710 581543316 2607 3 0.115074798619102 RFvsST 403634444 593788532 190154089 no 271.773465802868 TraesCS1A01G426900 chr1A_581541930 chr1A 581541930 C C G G 4 synonymous_variant LOW transcript unique_Triplet 581540710 581543316 2607 3 0.115074798619102 RFvsST 403634444 593788532 190154089 no 271.773465802868 TraesCS1A01G426900 chr1A_581542533 chr1A 581542533 C C T T 4 synonymous_variant LOW transcript unique_Triplet 581540710 581543316 2607 3 0.115074798619102 RFvsST 403634444 593788532 190154089 no 271.773465802868 TraesCS1A01G427000 chr1A_581576311 chr1A 581576311 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 581570414 581576192 5779 1 0.0173040318394186 RFvsST 403634444 593788532 190154089 no 175.026337251419 TraesCS1A01G428100 chr1A_582222469 chr1A 582222469 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 582219350 582221953 2604 2 0.0768049155145929 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G428100 chr1A_582219904 chr1A 582219904 T T C C 4 missense_variant MODERATE transcript unique_Triplet 582219350 582221953 2604 2 0.0768049155145929 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G428200 chr1A_582227480 chr1A 582227480 A A G G 4 start_lost HIGH transcript non_Triplet 582226657 582227481 825 2 0.242424242424242 RFvsST 403634444 593788532 190154089 no 59.7793512766667 TraesCS1A01G428200 chr1A_582227494 chr1A 582227494 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 582226657 582227481 825 2 0.242424242424242 RFvsST 403634444 593788532 190154089 no 59.7793512766667 TraesCS1A01G428700 chr1A_582426312 chr1A 582426312 T T C C 4 synonymous_variant LOW transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582420140 chr1A 582420140 A A G G 4 missense_variant MODERATE transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582417269 chr1A 582417269 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582419584 chr1A 582419584 A A G G 4 missense_variant MODERATE transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582417341 chr1A 582417341 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582418459 chr1A 582418459 G G A A 4 synonymous_variant LOW transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G428700 chr1A_582424446 chr1A 582424446 C C T T 4 missense_variant MODERATE transcript unique_Triplet 582417557 582427825 10269 7 0.0681663258350375 RFvsST 403634444 593788532 190154089 no 169.050368305912 TraesCS1A01G429400 chr1A_582708402 chr1A 582708402 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 582708623 582711979 3357 2 0.0595770032767352 RFvsST 403634444 593788532 190154089 no 128.55631890052 TraesCS1A01G429400 chr1A_582708526 chr1A 582708526 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 582708623 582711979 3357 2 0.0595770032767352 RFvsST 403634444 593788532 190154089 no 128.55631890052 TraesCS1A01G430400 chr1A_582865390 chr1A 582865390 G G A A 4 missense_variant MODERATE transcript unique_Triplet 582865170 582871135 5966 5 0.0838082467314784 RFvsST 403634444 593788532 190154089 no 320.698442108735 TraesCS1A01G430400 chr1A_582867888 chr1A 582867888 G G A A 4 synonymous_variant LOW transcript unique_Triplet 582865170 582871135 5966 5 0.0838082467314784 RFvsST 403634444 593788532 190154089 no 320.698442108735 TraesCS1A01G430400 chr1A_582867275 chr1A 582867275 T T C C 4 missense_variant MODERATE transcript unique_Triplet 582865170 582871135 5966 5 0.0838082467314784 RFvsST 403634444 593788532 190154089 no 320.698442108735 TraesCS1A01G430400 chr1A_582866805 chr1A 582866805 A A G G 4 synonymous_variant LOW transcript unique_Triplet 582865170 582871135 5966 5 0.0838082467314784 RFvsST 403634444 593788532 190154089 no 320.698442108735 TraesCS1A01G430400 chr1A_582870924 chr1A 582870924 G G A A 4 missense_variant MODERATE transcript unique_Triplet 582865170 582871135 5966 5 0.0838082467314784 RFvsST 403634444 593788532 190154089 no 320.698442108735 TraesCS1A01G431300 chr1A_583587634 chr1A 583587634 G T G T 3 stop_gained HIGH transcript unique_Triplet 583587305 583587663 359 2 0.557103064066852 RFvsST 403634444 593788532 190154089 no 6.40184394767462 TraesCS1A01G431300 chr1A_583587646 chr1A 583587646 G G A A 4 synonymous_variant LOW transcript unique_Triplet 583587305 583587663 359 2 0.557103064066852 RFvsST 403634444 593788532 190154089 no 6.40184394767462 TraesCS1A01G431400 chr1A_583604419 chr1A 583604419 C C G G 4 missense_variant MODERATE transcript unique_Triplet 583604369 583605397 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 178.012579241213 TraesCS1A01G431400 chr1A_583605070 chr1A 583605070 G G A A 4 missense_variant MODERATE transcript unique_Triplet 583604369 583605397 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 178.012579241213 TraesCS1A01G431400 chr1A_583604404 chr1A 583604404 C C G G 4 synonymous_variant LOW transcript unique_Triplet 583604369 583605397 1029 3 0.291545189504373 RFvsST 403634444 593788532 190154089 no 178.012579241213 TraesCS1A01G431500 chr1A_583659999 chr1A 583659999 A A G G 4 missense_variant MODERATE transcript unique_Triplet 583659941 583663916 3976 3 0.0754527162977867 RFvsST 403634444 593788532 190154089 no 86.4641045821178 TraesCS1A01G431500 chr1A_583659925 chr1A 583659925 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 583659941 583663916 3976 3 0.0754527162977867 RFvsST 403634444 593788532 190154089 no 86.4641045821178 TraesCS1A01G431500 chr1A_583663249 chr1A 583663249 G A G A 3 synonymous_variant LOW transcript unique_Triplet 583659941 583663916 3976 3 0.0754527162977867 RFvsST 403634444 593788532 190154089 no 86.4641045821178 TraesCS1A01G431600 chr1A_583894984 chr1A 583894984 C T C T 3 synonymous_variant LOW transcript unique_Triplet 583892469 583895020 2552 4 0.156739811912226 RFvsST 403634444 593788532 190154089 no 346.483558597936 TraesCS1A01G431600 chr1A_583892998 chr1A 583892998 G G T T 4 missense_variant MODERATE transcript unique_Triplet 583892469 583895020 2552 4 0.156739811912226 RFvsST 403634444 593788532 190154089 no 346.483558597936 TraesCS1A01G431600 chr1A_583893000 chr1A 583893000 T A T A 3 missense_variant MODERATE transcript unique_Triplet 583892469 583895020 2552 4 0.156739811912226 RFvsST 403634444 593788532 190154089 no 346.483558597936 TraesCS1A01G431600 chr1A_583895078 chr1A 583895078 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 583892469 583895020 2552 4 0.156739811912226 RFvsST 403634444 593788532 190154089 no 346.483558597936 TraesCS1A01G432800 chr1A_584374207 chr1A 584374207 C C G G 4 synonymous_variant LOW transcript unique_Triplet 584373615 584375025 1411 4 0.283486888731396 RFvsST 403634444 593788532 190154089 no 83.9981085328147 TraesCS1A01G432800 chr1A_584374655 chr1A 584374655 T T C C 4 missense_variant MODERATE transcript unique_Triplet 584373615 584375025 1411 4 0.283486888731396 RFvsST 403634444 593788532 190154089 no 83.9981085328147 TraesCS1A01G432800 chr1A_584374675 chr1A 584374675 T T C C 4 synonymous_variant LOW transcript unique_Triplet 584373615 584375025 1411 4 0.283486888731396 RFvsST 403634444 593788532 190154089 no 83.9981085328147 TraesCS1A01G432800 chr1A_584375104 chr1A 584375104 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 584373615 584375025 1411 4 0.283486888731396 RFvsST 403634444 593788532 190154089 no 83.9981085328147 TraesCS1A01G432900 chr1A_584471801 chr1A 584471801 G G C C 4 missense_variant MODERATE transcript non_Triplet 584469224 584480151 10928 4 0.0366032210834553 RFvsST 403634444 593788532 190154089 no 61.0991977913789 TraesCS1A01G432900 chr1A_584469113 chr1A 584469113 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 584469224 584480151 10928 4 0.0366032210834553 RFvsST 403634444 593788532 190154089 no 61.0991977913789 TraesCS1A01G432900 chr1A_584480352 chr1A 584480352 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 584469224 584480151 10928 4 0.0366032210834553 RFvsST 403634444 593788532 190154089 no 61.0991977913789 TraesCS1A01G432900 chr1A_584469444 chr1A 584469444 A A G G 4 missense_variant MODERATE transcript non_Triplet 584469224 584480151 10928 4 0.0366032210834553 RFvsST 403634444 593788532 190154089 no 61.0991977913789 TraesCS1A01G433300 chr1A_584674692 chr1A 584674692 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 584671767 584674541 2775 2 0.0720720720720721 RFvsST 403634444 593788532 190154089 no 64.3222326867219 TraesCS1A01G433300 chr1A_584671823 chr1A 584671823 C C G G 4 synonymous_variant LOW transcript unique_Triplet 584671767 584674541 2775 2 0.0720720720720721 RFvsST 403634444 593788532 190154089 no 64.3222326867219 TraesCS1A01G433400 chr1A_584679779 chr1A 584679779 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 584676043 584676930 888 2 0.225225225225225 RFvsST 403634444 593788532 190154089 no 97.3415617339143 TraesCS1A01G433400 chr1A_584676061 chr1A 584676061 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 584676043 584676930 888 2 0.225225225225225 RFvsST 403634444 593788532 190154089 no 97.3415617339143 TraesCS1A01G433500 chr1A_584680143 chr1A 584680143 G A G A 3 synonymous_variant LOW transcript non_Triplet 584679823 584683435 3613 2 0.0553556601162469 RFvsST 403634444 593788532 190154089 no 114.870068507234 TraesCS1A01G433500 chr1A_584683244 chr1A 584683244 G G C C 4 synonymous_variant LOW transcript non_Triplet 584679823 584683435 3613 2 0.0553556601162469 RFvsST 403634444 593788532 190154089 no 114.870068507234 TraesCS1A01G435000 chr1A_585626154 chr1A 585626154 A A T T 4 missense_variant MODERATE transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626503 chr1A 585626503 C C T T 4 missense_variant MODERATE transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626445 chr1A 585626445 G A G A 3 missense_variant MODERATE transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626065 chr1A 585626065 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626545 chr1A 585626545 C C T T 4 missense_variant MODERATE transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626153 chr1A 585626153 G G T T 4 synonymous_variant LOW transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G435000 chr1A_585626446 chr1A 585626446 C C T T 4 missense_variant MODERATE transcript unique_Triplet 585626138 585628073 1936 7 0.361570247933884 RFvsST 403634444 593788532 190154089 no 234.908599249937 TraesCS1A01G437400 chr1A_586953013 chr1A 586953013 A G A G 3 missense_variant MODERATE transcript unique_Triplet 586951842 586955974 4133 3 0.0725864989112025 RFvsST 403634444 593788532 190154089 no 207.525769354265 TraesCS1A01G437400 chr1A_586953792 chr1A 586953792 A G A G 3 synonymous_variant LOW transcript unique_Triplet 586951842 586955974 4133 3 0.0725864989112025 RFvsST 403634444 593788532 190154089 no 207.525769354265 TraesCS1A01G437400 chr1A_586953042 chr1A 586953042 A C A C 3 missense_variant MODERATE transcript unique_Triplet 586951842 586955974 4133 3 0.0725864989112025 RFvsST 403634444 593788532 190154089 no 207.525769354265 TraesCS1A01G437600 chr1A_587360393 chr1A 587360393 G A G A 3 synonymous_variant LOW transcript non_Triplet 587360041 587361959 1919 1 0.0521104742053153 RFvsST 403634444 593788532 190154089 no 1.9061300470522 TraesCS1A01G438600 chr1A_588301001 chr1A 588301001 G G A A 4 synonymous_variant LOW transcript unique_Triplet 588296990 588303540 6551 1 0.0152648450618226 RFvsST 403634444 593788532 190154089 no 1340.32190558186 TraesCS1A01G439300 chr1A_588902814 chr1A 588902814 G T G T 3 missense_variant MODERATE transcript unique_Triplet 588899833 588903358 3526 1 0.0283607487237663 RFvsST 403634444 593788532 190154089 no 196.247090499423 TraesCS1A01G439400 chr1A_588908828 chr1A 588908828 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 588905724 588907936 2213 3 0.135562584726615 RFvsST 403634444 593788532 190154089 no 1547.91210844806 TraesCS1A01G439400 chr1A_588908316 chr1A 588908316 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 588905724 588907936 2213 3 0.135562584726615 RFvsST 403634444 593788532 190154089 no 1547.91210844806 TraesCS1A01G439400 chr1A_588906459 chr1A 588906459 T C T C 3 missense_variant MODERATE transcript non_Triplet 588905724 588907936 2213 3 0.135562584726615 RFvsST 403634444 593788532 190154089 no 1547.91210844806 TraesCS1A01G439500 chr1A_589028327 chr1A 589028327 C C T T 4 synonymous_variant LOW transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439500 chr1A_589032864 chr1A 589032864 G A G A 3 synonymous_variant LOW transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439500 chr1A_589020905 chr1A 589020905 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439500 chr1A_589023953 chr1A 589023953 G G A A 4 missense_variant MODERATE transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439500 chr1A_589022393 chr1A 589022393 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439500 chr1A_589023819 chr1A 589023819 C C T T 4 synonymous_variant LOW transcript unique_Triplet 589022448 589033191 10744 6 0.0558451228592703 RFvsST 403634444 593788532 190154089 no 593.446546261482 TraesCS1A01G439600 chr1A_589039433 chr1A 589039433 G G C C 4 missense_variant MODERATE transcript unique_Triplet 589038812 589039466 655 1 0.152671755725191 RFvsST 403634444 593788532 190154089 no 44.3083271762539 TraesCS1A01G439700 chr1A_589041822 chr1A 589041822 C C T T 4 missense_variant MODERATE transcript non_Triplet 589040177 589042501 2325 2 0.0860215053763441 RFvsST 403634444 593788532 190154089 no 242.16261621005 TraesCS1A01G439700 chr1A_589040653 chr1A 589040653 T C T C 3 missense_variant MODERATE transcript non_Triplet 589040177 589042501 2325 2 0.0860215053763441 RFvsST 403634444 593788532 190154089 no 242.16261621005 TraesCS1A01G439800 chr1A_589054966 chr1A 589054966 C T C T 3 synonymous_variant LOW transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055372 chr1A 589055372 A A T T 4 synonymous_variant LOW transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055740 chr1A 589055740 A A G G 4 missense_variant MODERATE transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055371 chr1A 589055371 T T A A 4 missense_variant MODERATE transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589054742 chr1A 589054742 G G A A 4 missense_variant MODERATE transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055484 chr1A 589055484 C C A A 4 missense_variant MODERATE transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589056531 chr1A 589056531 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055507 chr1A 589055507 G G A A 4 synonymous_variant LOW transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589056276 chr1A 589056276 A G T T,G 6 synonymous_variant LOW transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G439800 chr1A_589055852 chr1A 589055852 C C G G 4 synonymous_variant LOW transcript unique_Triplet 589053764 589057299 3536 10 0.282805429864253 RFvsST 403634444 593788532 190154089 no 401.133467083759 TraesCS1A01G440200 chr1A_589444044 chr1A 589444044 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 589440264 589444039 3776 1 0.0264830508474576 RFvsST 403634444 593788532 190154089 no 22.2130920473198 TraesCS1A01G441100 chr1A_589792275 chr1A 589792275 A A C C 4 missense_variant MODERATE transcript unique_Triplet 589791150 589792538 1389 1 0.0719942404607631 RFvsST 403634444 593788532 190154089 no 118.901830811182 TraesCS1A01G441400 chr1A_590002741 chr1A 590002741 A A G G 4 missense_variant MODERATE transcript non_Triplet 590001146 590005534 4389 4 0.0911369332421964 RFvsST 403634444 593788532 190154089 no 101.037416013316 TraesCS1A01G441400 chr1A_590001977 chr1A 590001977 A A G G 4 missense_variant MODERATE transcript non_Triplet 590001146 590005534 4389 4 0.0911369332421964 RFvsST 403634444 593788532 190154089 no 101.037416013316 TraesCS1A01G441400 chr1A_590001461 chr1A 590001461 A A C C 4 missense_variant MODERATE transcript non_Triplet 590001146 590005534 4389 4 0.0911369332421964 RFvsST 403634444 593788532 190154089 no 101.037416013316 TraesCS1A01G441400 chr1A_590006115 chr1A 590006115 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 590001146 590005534 4389 4 0.0911369332421964 RFvsST 403634444 593788532 190154089 no 101.037416013316 TraesCS1A01G441500 chr1A_590249770 chr1A 590249770 C C A A 4 missense_variant MODERATE transcript non_Triplet 590249722 590250457 736 2 0.271739130434783 RFvsST 403634444 593788532 190154089 no 443.346328055922 TraesCS1A01G441500 chr1A_590249757 chr1A 590249757 T T C C 4 synonymous_variant LOW transcript non_Triplet 590249722 590250457 736 2 0.271739130434783 RFvsST 403634444 593788532 190154089 no 443.346328055922 TraesCS1A01G441600 chr1A_590343993 chr1A 590343993 C C T T 4 synonymous_variant LOW transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590347880 chr1A 590347880 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590346571 chr1A 590346571 G G A A 4 synonymous_variant LOW transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590342407 chr1A 590342407 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590342710 chr1A 590342710 A A T T 4 missense_variant MODERATE transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590347757 chr1A 590347757 G G A A 4 missense_variant MODERATE transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590344536 chr1A 590344536 C C T T 4 synonymous_variant LOW transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441600 chr1A_590344788 chr1A 590344788 A A G G 4 missense_variant MODERATE transcript non_Triplet 590342677 590347770 5094 8 0.157047506870828 RFvsST 403634444 593788532 190154089 no 206.132790378028 TraesCS1A01G441800 chr1A_590553104 chr1A 590553104 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 590547602 590551221 3620 4 0.110497237569061 RFvsST 403634444 593788532 190154089 no 189.730747364611 TraesCS1A01G441800 chr1A_590547319 chr1A 590547319 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 590547602 590551221 3620 4 0.110497237569061 RFvsST 403634444 593788532 190154089 no 189.730747364611 TraesCS1A01G441800 chr1A_590549619 chr1A 590549619 G G T T 4 stop_gained HIGH transcript non_Triplet 590547602 590551221 3620 4 0.110497237569061 RFvsST 403634444 593788532 190154089 no 189.730747364611 TraesCS1A01G441800 chr1A_590549935 chr1A 590549935 A A C C 4 synonymous_variant LOW transcript non_Triplet 590547602 590551221 3620 4 0.110497237569061 RFvsST 403634444 593788532 190154089 no 189.730747364611 TraesCS1A01G442300 chr1A_590997356 chr1A 590997356 T T C C 4 missense_variant MODERATE transcript unique_Triplet 590995643 590997413 1771 5 0.282326369282891 RFvsST 403634444 593788532 190154089 no 667.192730741357 TraesCS1A01G442300 chr1A_590995838 chr1A 590995838 C C T T 4 synonymous_variant LOW transcript unique_Triplet 590995643 590997413 1771 5 0.282326369282891 RFvsST 403634444 593788532 190154089 no 667.192730741357 TraesCS1A01G442300 chr1A_590995880 chr1A 590995880 G G A A 4 synonymous_variant LOW transcript unique_Triplet 590995643 590997413 1771 5 0.282326369282891 RFvsST 403634444 593788532 190154089 no 667.192730741357 TraesCS1A01G442300 chr1A_590995853 chr1A 590995853 A A C C 4 synonymous_variant LOW transcript unique_Triplet 590995643 590997413 1771 5 0.282326369282891 RFvsST 403634444 593788532 190154089 no 667.192730741357 TraesCS1A01G442300 chr1A_590997373 chr1A 590997373 A A G G 4 missense_variant MODERATE transcript unique_Triplet 590995643 590997413 1771 5 0.282326369282891 RFvsST 403634444 593788532 190154089 no 667.192730741357 TraesCS1A01G442400 chr1A_591102120 chr1A 591102120 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591091136 chr1A 591091136 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591091248 chr1A 591091248 G G A A 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591099360 chr1A 591099360 C C T T 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591095673 chr1A 591095673 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591089522 chr1A 591089522 C C A A 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591096979 chr1A 591096979 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591098187 chr1A 591098187 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591090988 chr1A 591090988 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591098822 chr1A 591098822 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591090300 chr1A 591090300 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591093391 chr1A 591093391 C C T T 4 synonymous_variant LOW transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591098309 chr1A 591098309 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591089444 chr1A 591089444 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442400 chr1A_591089626 chr1A 591089626 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 591089516 591102115 12600 15 0.119047619047619 RFvsST 403634444 593788532 190154089 no 798.722827909703 TraesCS1A01G442500 chr1A_591147437 chr1A 591147437 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147295 chr1A 591147295 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147606 chr1A 591147606 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147502 chr1A 591147502 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147698 chr1A 591147698 G G T T 4 synonymous_variant LOW transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591148752 chr1A 591148752 A A G G 4 synonymous_variant LOW transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147481 chr1A 591147481 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147633 chr1A 591147633 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591153665 chr1A 591153665 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G442500 chr1A_591147704 chr1A 591147704 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591147159 591152443 5285 10 0.189214758751183 RFvsST 403634444 593788532 190154089 no 708.276572688869 TraesCS1A01G443100 chr1A_591608236 chr1A 591608236 A A G G 4 missense_variant MODERATE transcript unique_Triplet 591606035 591610547 4513 3 0.0664746288499889 RFvsST 403634444 593788532 190154089 no 29.6015153160311 TraesCS1A01G443100 chr1A_591606187 chr1A 591606187 C C G G 4 missense_variant MODERATE transcript unique_Triplet 591606035 591610547 4513 3 0.0664746288499889 RFvsST 403634444 593788532 190154089 no 29.6015153160311 TraesCS1A01G443100 chr1A_591611439 chr1A 591611439 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 591606035 591610547 4513 3 0.0664746288499889 RFvsST 403634444 593788532 190154089 no 29.6015153160311 TraesCS1A01G443200 chr1A_591613899 chr1A 591613899 G G A A 4 missense_variant MODERATE transcript unique_Triplet 591611654 591615395 3742 2 0.0534473543559594 RFvsST 403634444 593788532 190154089 no 762.813514525404 TraesCS1A01G443200 chr1A_591612119 chr1A 591612119 A A G G 4 synonymous_variant LOW transcript unique_Triplet 591611654 591615395 3742 2 0.0534473543559594 RFvsST 403634444 593788532 190154089 no 762.813514525404 TraesCS1A01G443400 chr1A_591926072 chr1A 591926072 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 591926186 591930017 3832 1 0.0260960334029228 RFvsST 403634444 593788532 190154089 no 102.354520016171 TraesCS1A01G443600 chr1A_591955992 chr1A 591955992 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 591948919 591953855 4937 1 0.0202552157180474 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G443700 chr1A_591954212 chr1A 591954212 C C G G 4 synonymous_variant LOW transcript unique_Triplet 591954192 591955918 1727 2 0.115807759119861 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G443700 chr1A_591954406 chr1A 591954406 A A G G 4 missense_variant MODERATE transcript unique_Triplet 591954192 591955918 1727 2 0.115807759119861 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G443900 chr1A_592091013 chr1A 592091013 C C G G 4 missense_variant MODERATE transcript unique_Triplet 592087339 592091359 4021 2 0.0497388709276299 RFvsST 403634444 593788532 190154089 no 1173.8559860774 TraesCS1A01G443900 chr1A_592091230 chr1A 592091230 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 592087339 592091359 4021 2 0.0497388709276299 RFvsST 403634444 593788532 190154089 no 1173.8559860774 TraesCS1A01G444000 chr1A_592088822 chr1A 592088822 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 592091804 592092538 735 3 0.408163265306122 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G444000 chr1A_592090927 chr1A 592090927 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 592091804 592092538 735 3 0.408163265306122 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G444000 chr1A_592088819 chr1A 592088819 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 592091804 592092538 735 3 0.408163265306122 RFvsST 403634444 593788532 190154089 no No_match TraesCS1A01G444200 chr1A_592308603 chr1A 592308603 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 592308515 592312179 3665 3 0.0818553888130969 RFvsST 403634444 593788532 190154089 no 463.758016385543 TraesCS1A01G444200 chr1A_592311926 chr1A 592311926 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 592308515 592312179 3665 3 0.0818553888130969 RFvsST 403634444 593788532 190154089 no 463.758016385543 TraesCS1A01G444200 chr1A_592312062 chr1A 592312062 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 592308515 592312179 3665 3 0.0818553888130969 RFvsST 403634444 593788532 190154089 no 463.758016385543 TraesCS1A01G445700 chr1A_593399003 chr1A 593399003 T T G G 4 missense_variant MODERATE transcript non_Triplet 593395820 593400047 4228 2 0.0473036896877956 RFvsST 403634444 593788532 190154089 no 44.1798172419434 TraesCS1A01G445700 chr1A_593398197 chr1A 593398197 C C T T 4 missense_variant MODERATE transcript non_Triplet 593395820 593400047 4228 2 0.0473036896877956 RFvsST 403634444 593788532 190154089 no 44.1798172419434 TraesCS1A01G445800 chr1A_593405914 chr1A 593405914 C C A A 4 missense_variant MODERATE transcript unique_Triplet 593403274 593406447 3174 3 0.0945179584120983 RFvsST 403634444 593788532 190154089 no 72.4445703752343 TraesCS1A01G445800 chr1A_593405384 chr1A 593405384 A A G G 4 missense_variant MODERATE transcript unique_Triplet 593403274 593406447 3174 3 0.0945179584120983 RFvsST 403634444 593788532 190154089 no 72.4445703752343 TraesCS1A01G445800 chr1A_593406315 chr1A 593406315 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 593403274 593406447 3174 3 0.0945179584120983 RFvsST 403634444 593788532 190154089 no 72.4445703752343 TraesCS1A01G445900 chr1A_593550991 chr1A 593550991 T T C C 4 missense_variant MODERATE transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593549127 chr1A 593549127 A A G G 4 synonymous_variant LOW transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593551933 chr1A 593551933 G G C C 4 missense_variant MODERATE transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593550454 chr1A 593550454 G G A A 4 missense_variant MODERATE transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593548305 chr1A 593548305 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593551862 chr1A 593551862 A A G G 4 synonymous_variant LOW transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593550685 chr1A 593550685 G G A A 4 missense_variant MODERATE transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1A01G445900 chr1A_593548902 chr1A 593548902 A A C C 4 synonymous_variant LOW transcript unique_Triplet 593548068 593552047 3980 8 0.201005025125628 RFvsST 403634444 593788532 190154089 no 1143.66091116134 TraesCS1B01G000600 chr1B_1203877 chr1B 1203877 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 1198857 1199521 665 1 0.150375939849624 RFvsST 168824 689807370 689638547 no 444.474961314085 TraesCS1B01G000800 chr1B_1203913 chr1B 1203913 T C T C 3 missense_variant MODERATE transcript unique_Triplet 1203878 1206994 3117 1 0.0320821302534488 RFvsST 168824 689807370 689638547 no 414.568581677599 TraesCS1B01G001000 chr1B_1253922 chr1B 1253922 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1248929 1255456 6528 5 0.076593137254902 RFvsST 168824 689807370 689638547 no 62.0801852768791 TraesCS1B01G001000 chr1B_1254498 chr1B 1254498 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1248929 1255456 6528 5 0.076593137254902 RFvsST 168824 689807370 689638547 no 62.0801852768791 TraesCS1B01G001000 chr1B_1255216 chr1B 1255216 C T C T 3 synonymous_variant LOW transcript unique_Triplet 1248929 1255456 6528 5 0.076593137254902 RFvsST 168824 689807370 689638547 no 62.0801852768791 TraesCS1B01G001000 chr1B_1249159 chr1B 1249159 C G C G 3 missense_variant MODERATE transcript unique_Triplet 1248929 1255456 6528 5 0.076593137254902 RFvsST 168824 689807370 689638547 no 62.0801852768791 TraesCS1B01G001000 chr1B_1255210 chr1B 1255210 T C T C 3 synonymous_variant LOW transcript unique_Triplet 1248929 1255456 6528 5 0.076593137254902 RFvsST 168824 689807370 689638547 no 62.0801852768791 TraesCS1B01G001500 chr1B_1414893 chr1B 1414893 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 1416127 1418511 2385 2 0.0838574423480084 RFvsST 168824 689807370 689638547 no 46.6608739662997 TraesCS1B01G001500 chr1B_1416345 chr1B 1416345 T C T C 3 synonymous_variant LOW transcript non_Triplet 1416127 1418511 2385 2 0.0838574423480084 RFvsST 168824 689807370 689638547 no 46.6608739662997 TraesCS1B01G001600 chr1B_1421338 chr1B 1421338 T C T C 3 synonymous_variant LOW transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1420351 chr1B 1420351 T A T A 3 synonymous_variant LOW transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1422112 chr1B 1422112 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1421208 chr1B 1421208 C T C T 3 missense_variant MODERATE transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1420397 chr1B 1420397 C T C T 3 missense_variant MODERATE transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1419786 chr1B 1419786 A C A C 3 missense_variant MODERATE transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001600 chr1B_1422098 chr1B 1422098 A G A G 3 missense_variant MODERATE transcript unique_Triplet 1419733 1422382 2650 7 0.264150943396226 RFvsST 168824 689807370 689638547 no 174.291643629194 TraesCS1B01G001800 chr1B_1436048 chr1B 1436048 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434090 chr1B 1434090 G C G C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1435998 chr1B 1435998 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432514 chr1B 1432514 T C T C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434354 chr1B 1434354 G C G C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432437 chr1B 1432437 A T A T 3 missense_variant MODERATE transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434147 chr1B 1434147 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434318 chr1B 1434318 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432865 chr1B 1432865 A C A C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1431195 chr1B 1431195 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434255 chr1B 1434255 G G C C 4 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433814 chr1B 1433814 G T G T 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432925 chr1B 1432925 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433838 chr1B 1433838 C C T T 4 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1430915 chr1B 1430915 T C T C 3 missense_variant MODERATE transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432145 chr1B 1432145 C C A A 4 missense_variant MODERATE transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434060 chr1B 1434060 G T G T 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433574 chr1B 1433574 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433835 chr1B 1433835 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1431192 chr1B 1431192 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1436278 chr1B 1436278 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1435889 chr1B 1435889 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434435 chr1B 1434435 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433904 chr1B 1433904 G C G C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432263 chr1B 1432263 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432934 chr1B 1432934 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1431937 chr1B 1431937 C G C G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1431949 chr1B 1431949 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433442 chr1B 1433442 G A G A 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432502 chr1B 1432502 T C T C 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1433571 chr1B 1433571 C T C T 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1432119 chr1B 1432119 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G001800 chr1B_1434300 chr1B 1434300 A G A G 3 synonymous_variant LOW transcript unique_Triplet 1430395 1435818 5424 33 0.608407079646018 RFvsST 168824 689807370 689638547 no 407.790905272409 TraesCS1B01G007800 chr1B_4320968 chr1B 4320968 C T C T 3 missense_variant MODERATE transcript unique_Triplet 4320651 4326770 6120 1 0.0163398692810457 RFvsST 168824 689807370 689638547 no 51.4312468620406 TraesCS1B01G008000 chr1B_4349069 chr1B 4349069 A A G G 4 synonymous_variant LOW transcript unique_Triplet 4345556 4352617 7062 4 0.0566411781365052 RFvsST 168824 689807370 689638547 no 280.780735574663 TraesCS1B01G008000 chr1B_4345972 chr1B 4345972 A A G G 4 synonymous_variant LOW transcript unique_Triplet 4345556 4352617 7062 4 0.0566411781365052 RFvsST 168824 689807370 689638547 no 280.780735574663 TraesCS1B01G008000 chr1B_4347120 chr1B 4347120 A C A C 3 missense_variant MODERATE transcript unique_Triplet 4345556 4352617 7062 4 0.0566411781365052 RFvsST 168824 689807370 689638547 no 280.780735574663 TraesCS1B01G008000 chr1B_4349202 chr1B 4349202 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4345556 4352617 7062 4 0.0566411781365052 RFvsST 168824 689807370 689638547 no 280.780735574663 TraesCS1B01G008200 chr1B_4476087 chr1B 4476087 G G C C 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 4475945 4479093 3149 2 0.0635122261035249 RFvsST 168824 689807370 689638547 no 107.363699354488 TraesCS1B01G008200 chr1B_4478147 chr1B 4478147 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 4475945 4479093 3149 2 0.0635122261035249 RFvsST 168824 689807370 689638547 no 107.363699354488 TraesCS1B01G011100 chr1B_5157168 chr1B 5157168 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 5157174 5160021 2848 1 0.0351123595505618 RFvsST 168824 689807370 689638547 no 400.129631008224 TraesCS1B01G011200 chr1B_5160022 chr1B 5160022 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 5159471 5159817 347 1 0.288184438040346 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G016800 chr1B_8181707 chr1B 8181707 A A C C 4 synonymous_variant LOW transcript unique_Triplet 8180389 8181740 1352 3 0.22189349112426 RFvsST 168824 689807370 689638547 no 21.2886848242251 TraesCS1B01G016800 chr1B_8181512 chr1B 8181512 C C G G 4 synonymous_variant LOW transcript unique_Triplet 8180389 8181740 1352 3 0.22189349112426 RFvsST 168824 689807370 689638547 no 21.2886848242251 TraesCS1B01G016800 chr1B_8181619 chr1B 8181619 C C T T 4 missense_variant MODERATE transcript unique_Triplet 8180389 8181740 1352 3 0.22189349112426 RFvsST 168824 689807370 689638547 no 21.2886848242251 TraesCS1B01G020600 chr1B_9597562 chr1B 9597562 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9599454 chr1B 9599454 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9598159 chr1B 9598159 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597519 chr1B 9597519 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597839 chr1B 9597839 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597299 chr1B 9597299 T T C C 4 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597318 chr1B 9597318 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597491 chr1B 9597491 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597436 chr1B 9597436 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9598879 chr1B 9598879 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597913 chr1B 9597913 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597376 chr1B 9597376 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597721 chr1B 9597721 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9599508 chr1B 9599508 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597347 chr1B 9597347 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597391 chr1B 9597391 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020600 chr1B_9597558 chr1B 9597558 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 9592753 9599550 6798 17 0.250073551044425 RFvsST 168824 689807370 689638547 no 469.430881489222 TraesCS1B01G020700 chr1B_9593604 chr1B 9593604 T T C C 4 synonymous_variant LOW transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9597269 chr1B 9597269 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9599594 chr1B 9599594 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9593682 chr1B 9593682 A A C C 4 synonymous_variant LOW transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9593688 chr1B 9593688 C C A A 4 synonymous_variant LOW transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9593507 chr1B 9593507 C C G G 4 missense_variant MODERATE transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9593784 chr1B 9593784 A A G G 4 synonymous_variant LOW transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9595995 chr1B 9595995 C C G G 4 missense_variant MODERATE transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G020700 chr1B_9594216 chr1B 9594216 A A G G 4 synonymous_variant LOW transcript non_Triplet 9593133 9596669 3537 9 0.254452926208651 RFvsST 168824 689807370 689638547 no 160.807302519618 TraesCS1B01G021300 chr1B_9838970 chr1B 9838970 G G C C 4 missense_variant MODERATE transcript unique_Triplet 9838961 9844193 5233 1 0.0191094974202178 RFvsST 168824 689807370 689638547 no 19.1454560401133 TraesCS1B01G021400 chr1B_9844304 chr1B 9844304 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 9845466 9846264 799 1 0.125156445556946 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G022300 chr1B_10081027 chr1B 10081027 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10081746 chr1B 10081746 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10067844 chr1B 10067844 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10068120 chr1B 10068120 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10068135 chr1B 10068135 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10067679 chr1B 10067679 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10067880 chr1B 10067880 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10067737 chr1B 10067737 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10081728 chr1B 10081728 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10067859 chr1B 10067859 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022300 chr1B_10080996 chr1B 10080996 A G T T,G 6 missense_variant MODERATE transcript nonUnique_Triplet 10067766 10082109 14344 11 0.0766871165644172 RFvsST 168824 689807370 689638547 no 503.052200094241 TraesCS1B01G022400 chr1B_10080010 chr1B 10080010 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10079839 chr1B 10079839 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10079909 chr1B 10079909 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10069109 chr1B 10069109 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10080007 chr1B 10080007 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10079899 chr1B 10079899 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022400 chr1B_10079968 chr1B 10079968 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 10072884 10075808 2925 7 0.239316239316239 RFvsST 168824 689807370 689638547 no 314.094896313813 TraesCS1B01G022700 chr1B_10111487 chr1B 10111487 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 10103956 10106787 2832 4 0.141242937853107 RFvsST 168824 689807370 689638547 no 86.9894535532754 TraesCS1B01G022700 chr1B_10104250 chr1B 10104250 G G A A 4 synonymous_variant LOW transcript unique_Triplet 10103956 10106787 2832 4 0.141242937853107 RFvsST 168824 689807370 689638547 no 86.9894535532754 TraesCS1B01G022700 chr1B_10104230 chr1B 10104230 T T G G 4 missense_variant MODERATE transcript unique_Triplet 10103956 10106787 2832 4 0.141242937853107 RFvsST 168824 689807370 689638547 no 86.9894535532754 TraesCS1B01G022700 chr1B_10105327 chr1B 10105327 A A G G 4 synonymous_variant LOW transcript unique_Triplet 10103956 10106787 2832 4 0.141242937853107 RFvsST 168824 689807370 689638547 no 86.9894535532754 TraesCS1B01G022800 chr1B_10113678 chr1B 10113678 G G C C 4 synonymous_variant LOW transcript unique_Triplet 10111697 10114127 2431 1 0.0411353352529823 RFvsST 168824 689807370 689638547 no 642.087051028901 TraesCS1B01G022900 chr1B_10204650 chr1B 10204650 A A T T 4 synonymous_variant LOW transcript unique_Triplet 10204167 10205763 1597 2 0.125234815278647 RFvsST 168824 689807370 689638547 no 90.6924756572937 TraesCS1B01G022900 chr1B_10204569 chr1B 10204569 C C T T 4 synonymous_variant LOW transcript unique_Triplet 10204167 10205763 1597 2 0.125234815278647 RFvsST 168824 689807370 689638547 no 90.6924756572937 TraesCS1B01G024300 chr1B_11692858 chr1B 11692858 T T C C 4 missense_variant MODERATE transcript non_Triplet 11692215 11692915 701 1 0.14265335235378 RFvsST 168824 689807370 689638547 no 25.7268138957627 TraesCS1B01G030000 chr1B_14845007 chr1B 14845007 A A G G 4 synonymous_variant LOW transcript unique_Triplet 14844978 14847192 2215 4 0.18058690744921 RFvsST 168824 689807370 689638547 no 37.1044531452152 TraesCS1B01G030000 chr1B_14845010 chr1B 14845010 C C T T 4 synonymous_variant LOW transcript unique_Triplet 14844978 14847192 2215 4 0.18058690744921 RFvsST 168824 689807370 689638547 no 37.1044531452152 TraesCS1B01G030000 chr1B_14845499 chr1B 14845499 T T C C 4 synonymous_variant LOW transcript unique_Triplet 14844978 14847192 2215 4 0.18058690744921 RFvsST 168824 689807370 689638547 no 37.1044531452152 TraesCS1B01G030000 chr1B_14845460 chr1B 14845460 A A G G 4 synonymous_variant LOW transcript unique_Triplet 14844978 14847192 2215 4 0.18058690744921 RFvsST 168824 689807370 689638547 no 37.1044531452152 TraesCS1B01G030800 chr1B_15171054 chr1B 15171054 C C T T 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15167603 chr1B 15167603 T T C C 4 missense_variant MODERATE transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15167409 chr1B 15167409 G G A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15170932 chr1B 15170932 A A G G 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15168163 chr1B 15168163 A A C C 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15175413 chr1B 15175413 C C A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15175259 chr1B 15175259 A A G G 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15176029 chr1B 15176029 G G A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15176138 chr1B 15176138 C C T T 4 missense_variant MODERATE transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15175271 chr1B 15175271 G G A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15168213 chr1B 15168213 T T C C 4 missense_variant MODERATE transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15169636 chr1B 15169636 T T G G 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15167583 chr1B 15167583 G G A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G030800 chr1B_15171482 chr1B 15171482 G G A A 4 synonymous_variant LOW transcript non_Triplet 15165718 15176901 11184 14 0.125178826895565 RFvsST 168824 689807370 689638547 no 239.917031824133 TraesCS1B01G031000 chr1B_15290689 chr1B 15290689 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 15288303 15290150 1848 3 0.162337662337662 RFvsST 168824 689807370 689638547 no 11.6701976660822 TraesCS1B01G031000 chr1B_15290676 chr1B 15290676 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 15288303 15290150 1848 3 0.162337662337662 RFvsST 168824 689807370 689638547 no 11.6701976660822 TraesCS1B01G031000 chr1B_15288352 chr1B 15288352 G G A A 4 missense_variant MODERATE transcript unique_Triplet 15288303 15290150 1848 3 0.162337662337662 RFvsST 168824 689807370 689638547 no 11.6701976660822 TraesCS1B01G031100 chr1B_15295086 chr1B 15295086 G G A A 4 synonymous_variant LOW transcript unique_Triplet 15290720 15295649 4930 1 0.0202839756592292 RFvsST 168824 689807370 689638547 no 58.2674830748003 TraesCS1B01G031500 chr1B_15440019 chr1B 15440019 A A G G 4 synonymous_variant LOW transcript unique_Triplet 15439413 15441851 2439 1 0.0410004100041 RFvsST 168824 689807370 689638547 no 13.1458584581396 TraesCS1B01G031600 chr1B_15450700 chr1B 15450700 T T A A 4 synonymous_variant LOW transcript unique_Triplet 15448355 15451124 2770 3 0.108303249097473 RFvsST 168824 689807370 689638547 no 10.7030179518814 TraesCS1B01G031600 chr1B_15450923 chr1B 15450923 G G C C 4 synonymous_variant LOW transcript unique_Triplet 15448355 15451124 2770 3 0.108303249097473 RFvsST 168824 689807370 689638547 no 10.7030179518814 TraesCS1B01G031600 chr1B_15450673 chr1B 15450673 G G A A 4 synonymous_variant LOW transcript unique_Triplet 15448355 15451124 2770 3 0.108303249097473 RFvsST 168824 689807370 689638547 no 10.7030179518814 TraesCS1B01G035200 chr1B_16767201 chr1B 16767201 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 16757203 16764102 6900 1 0.0144927536231884 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G036500 chr1B_17382144 chr1B 17382144 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 17380545 17386280 5736 2 0.0348675034867503 RFvsST 168824 689807370 689638547 no 918.069831301718 TraesCS1B01G036500 chr1B_17385456 chr1B 17385456 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 17380545 17386280 5736 2 0.0348675034867503 RFvsST 168824 689807370 689638547 no 918.069831301718 TraesCS1B01G036600 chr1B_17386400 chr1B 17386400 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17387233 17390751 3519 2 0.0568343279340722 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G036600 chr1B_17386434 chr1B 17386434 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17387233 17390751 3519 2 0.0568343279340722 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G036900 chr1B_17624288 chr1B 17624288 G G C C 4 synonymous_variant LOW transcript unique_Triplet 17623097 17624296 1200 1 0.0833333333333333 RFvsST 168824 689807370 689638547 no 68.3039273718504 TraesCS1B01G037100 chr1B_17731064 chr1B 17731064 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17730655 chr1B 17730655 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17730530 chr1B 17730530 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17732505 chr1B 17732505 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17730669 chr1B 17730669 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17730526 chr1B 17730526 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17731181 chr1B 17731181 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037100 chr1B_17731157 chr1B 17731157 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 17730527 17732551 2025 8 0.395061728395062 RFvsST 168824 689807370 689638547 no 105.153687615562 TraesCS1B01G037600 chr1B_17792883 chr1B 17792883 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17788754 17792363 3610 1 0.0277008310249308 RFvsST 168824 689807370 689638547 no 7.95948525027385 TraesCS1B01G037700 chr1B_17792933 chr1B 17792933 G G A A 4 missense_variant MODERATE transcript unique_Triplet 17792923 17795176 2254 1 0.0443655723158829 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G037900 chr1B_17815829 chr1B 17815829 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 17811094 17815800 4707 4 0.0849798172933928 RFvsST 168824 689807370 689638547 no 23.0482219198027 TraesCS1B01G037900 chr1B_17811201 chr1B 17811201 A A G G 4 synonymous_variant LOW transcript non_Triplet 17811094 17815800 4707 4 0.0849798172933928 RFvsST 168824 689807370 689638547 no 23.0482219198027 TraesCS1B01G037900 chr1B_17811205 chr1B 17811205 C C A A 4 missense_variant MODERATE transcript non_Triplet 17811094 17815800 4707 4 0.0849798172933928 RFvsST 168824 689807370 689638547 no 23.0482219198027 TraesCS1B01G037900 chr1B_17815857 chr1B 17815857 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 17811094 17815800 4707 4 0.0849798172933928 RFvsST 168824 689807370 689638547 no 23.0482219198027 TraesCS1B01G038100 chr1B_17891129 chr1B 17891129 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17891183 chr1B 17891183 T T C C 4 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17891222 chr1B 17891222 G T G T 3 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17892386 chr1B 17892386 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17891228 chr1B 17891228 A A C C 4 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17891130 chr1B 17891130 C C T T 4 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17892313 chr1B 17892313 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17891336 chr1B 17891336 G G T T 4 synonymous_variant LOW transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038100 chr1B_17892357 chr1B 17892357 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17890029 17892262 2234 9 0.402864816472695 RFvsST 168824 689807370 689638547 no 103.548216833344 TraesCS1B01G038700 chr1B_18387033 chr1B 18387033 A A G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386740 chr1B 18386740 G G A A 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18385956 chr1B 18385956 T T G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386118 chr1B 18386118 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386823 chr1B 18386823 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387390 chr1B 18387390 G G C C 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387234 chr1B 18387234 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387039 chr1B 18387039 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18385923 chr1B 18385923 G A G A 3 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386160 chr1B 18386160 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18385974 chr1B 18385974 A A G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18385792 chr1B 18385792 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387772 chr1B 18387772 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387084 chr1B 18387084 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18385805 chr1B 18385805 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387285 chr1B 18387285 G G C C 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386733 chr1B 18386733 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386674 chr1B 18386674 T T C C 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387381 chr1B 18387381 C C G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386870 chr1B 18386870 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386720 chr1B 18386720 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387573 chr1B 18387573 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387755 chr1B 18387755 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387435 chr1B 18387435 G G T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386031 chr1B 18386031 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386387 chr1B 18386387 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387264 chr1B 18387264 G A G A 3 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386163 chr1B 18386163 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387382 chr1B 18387382 G A G A 3 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386874 chr1B 18386874 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386830 chr1B 18386830 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386433 chr1B 18386433 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387297 chr1B 18387297 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386319 chr1B 18386319 T T C C 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386687 chr1B 18386687 A A G G 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387210 chr1B 18387210 A A C C 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386997 chr1B 18386997 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386423 chr1B 18386423 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18387513 chr1B 18387513 C C G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G038700 chr1B_18386328 chr1B 18386328 A A G G 4 synonymous_variant LOW transcript unique_Triplet 18385833 18387689 1857 40 2.15401184706516 RFvsST 168824 689807370 689638547 no 687.068397414134 TraesCS1B01G041200 chr1B_20588113 chr1B 20588113 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20589310 chr1B 20589310 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20589333 chr1B 20589333 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587847 chr1B 20587847 T T C C 4 synonymous_variant LOW transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20589239 chr1B 20589239 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20588255 chr1B 20588255 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587997 chr1B 20587997 C C T T 4 synonymous_variant LOW transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587689 chr1B 20587689 A A G G 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587853 chr1B 20587853 G A G A 3 synonymous_variant LOW transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587942 chr1B 20587942 A A T T 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587632 chr1B 20587632 G G A A 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20589181 chr1B 20589181 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587889 chr1B 20587889 C C T T 4 synonymous_variant LOW transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20585684 chr1B 20585684 A A G G 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20588234 chr1B 20588234 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587828 chr1B 20587828 G G A A 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587950 chr1B 20587950 C C T T 4 missense_variant MODERATE transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041200 chr1B_20587475 chr1B 20587475 A A G G 4 synonymous_variant LOW transcript unique_Triplet 20585363 20588102 2740 18 0.656934306569343 RFvsST 168824 689807370 689638547 no 168.733192702972 TraesCS1B01G041300 chr1B_20592383 chr1B 20592383 T C T C 3 synonymous_variant LOW transcript non_Triplet 20589398 20594555 5158 4 0.0775494377665762 RFvsST 168824 689807370 689638547 no 4.10551087057398 TraesCS1B01G041300 chr1B_20589428 chr1B 20589428 C C T T 4 synonymous_variant LOW transcript non_Triplet 20589398 20594555 5158 4 0.0775494377665762 RFvsST 168824 689807370 689638547 no 4.10551087057398 TraesCS1B01G041300 chr1B_20590549 chr1B 20590549 A A G G 4 synonymous_variant LOW transcript non_Triplet 20589398 20594555 5158 4 0.0775494377665762 RFvsST 168824 689807370 689638547 no 4.10551087057398 TraesCS1B01G041300 chr1B_20591312 chr1B 20591312 A T A T 3 synonymous_variant LOW transcript non_Triplet 20589398 20594555 5158 4 0.0775494377665762 RFvsST 168824 689807370 689638547 no 4.10551087057398 TraesCS1B01G041400 chr1B_20836484 chr1B 20836484 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20835419 chr1B 20835419 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20836235 chr1B 20836235 A A T T 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20835248 chr1B 20835248 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20835614 chr1B 20835614 T T C C 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20835509 chr1B 20835509 G G C C 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20836364 chr1B 20836364 G G T T 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G041400 chr1B_20835746 chr1B 20835746 T T C C 4 synonymous_variant LOW transcript unique_Triplet 20835035 20836594 1560 8 0.512820512820513 RFvsST 168824 689807370 689638547 no 208.289368985472 TraesCS1B01G044000 chr1B_23980012 chr1B 23980012 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 23979840 23980973 1134 2 0.17636684303351 RFvsST 168824 689807370 689638547 no 58.2262483270483 TraesCS1B01G044000 chr1B_23981792 chr1B 23981792 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 23979840 23980973 1134 2 0.17636684303351 RFvsST 168824 689807370 689638547 no 58.2262483270483 TraesCS1B01G044100 chr1B_24152052 chr1B 24152052 G G A A 4 synonymous_variant LOW transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24150592 chr1B 24150592 C C T T 4 missense_variant MODERATE transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24151642 chr1B 24151642 G G A A 4 missense_variant MODERATE transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24152226 chr1B 24152226 A A G G 4 synonymous_variant LOW transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24150559 chr1B 24150559 A A C C 4 missense_variant MODERATE transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24152293 chr1B 24152293 C C G G 4 missense_variant MODERATE transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24151217 chr1B 24151217 G G A A 4 synonymous_variant LOW transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G044100 chr1B_24150907 chr1B 24150907 G G A A 4 missense_variant MODERATE transcript non_Triplet 24143624 24152620 8997 8 0.088918528398355 RFvsST 168824 689807370 689638547 no 449.695698313132 TraesCS1B01G045300 chr1B_25113000 chr1B 25113000 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 25112853 25113974 1122 2 0.17825311942959 RFvsST 168824 689807370 689638547 no 44.2828982586153 TraesCS1B01G045300 chr1B_25113121 chr1B 25113121 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 25112853 25113974 1122 2 0.17825311942959 RFvsST 168824 689807370 689638547 no 44.2828982586153 TraesCS1B01G045600 chr1B_25812590 chr1B 25812590 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 25808888 25811400 2513 1 0.0397930760047752 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G046300 chr1B_26185706 chr1B 26185706 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26187985 chr1B 26187985 T T C C 4 synonymous_variant LOW transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26188932 chr1B 26188932 G G C C 4 synonymous_variant LOW transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26188033 chr1B 26188033 C G C G 3 synonymous_variant LOW transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26187987 chr1B 26187987 C C G G 4 missense_variant MODERATE transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26188929 chr1B 26188929 G G C C 4 synonymous_variant LOW transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26188009 chr1B 26188009 T C T C 3 synonymous_variant LOW transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G046300 chr1B_26185709 chr1B 26185709 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 26186324 26189114 2791 8 0.286635614475098 RFvsST 168824 689807370 689638547 no 370.521606209835 TraesCS1B01G047700 chr1B_27677108 chr1B 27677108 G G A A 4 synonymous_variant LOW transcript non_Triplet 27676931 27678121 1191 1 0.0839630562552477 RFvsST 168824 689807370 689638547 no 80.0833109206576 TraesCS1B01G050200 chr1B_30396620 chr1B 30396620 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30394441 chr1B 30394441 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396089 chr1B 30396089 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30395684 chr1B 30395684 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396276 chr1B 30396276 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396320 chr1B 30396320 G C G C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396458 chr1B 30396458 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396315 chr1B 30396315 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396479 chr1B 30396479 C A C A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30394250 chr1B 30394250 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396611 chr1B 30396611 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30396327 chr1B 30396327 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050200 chr1B_30395203 chr1B 30395203 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 30394122 30396311 2190 13 0.593607305936073 RFvsST 168824 689807370 689638547 no 54.5975460245793 TraesCS1B01G050600 chr1B_30730355 chr1B 30730355 C T C T 3 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30731583 chr1B 30731583 A A C C 4 missense_variant MODERATE transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30731603 chr1B 30731603 C C T T 4 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30731594 chr1B 30731594 T T C C 4 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30731546 chr1B 30731546 C G C G 3 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30731575 chr1B 30731575 G G A A 4 missense_variant MODERATE transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30730796 chr1B 30730796 T G T G 3 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30730997 chr1B 30730997 G G A A 4 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30730630 chr1B 30730630 C T C T 3 missense_variant MODERATE transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G050600 chr1B_30730721 chr1B 30730721 A A T T 4 synonymous_variant LOW transcript unique_Triplet 30730211 30731683 1473 10 0.678886625933469 RFvsST 168824 689807370 689638547 no 285.187812588445 TraesCS1B01G056400 chr1B_39389259 chr1B 39389259 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 39377583 39384858 7276 1 0.0137438152831226 RFvsST 168824 689807370 689638547 no 8.91056999271637 TraesCS1B01G058600 chr1B_41085538 chr1B 41085538 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 41085738 41088693 2956 3 0.10148849797023 RFvsST 168824 689807370 689638547 no 352.940648170828 TraesCS1B01G058600 chr1B_41088066 chr1B 41088066 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41085738 41088693 2956 3 0.10148849797023 RFvsST 168824 689807370 689638547 no 352.940648170828 TraesCS1B01G058600 chr1B_41092018 chr1B 41092018 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 41085738 41088693 2956 3 0.10148849797023 RFvsST 168824 689807370 689638547 no 352.940648170828 TraesCS1B01G058700 chr1B_41092279 chr1B 41092279 C C A A 4 synonymous_variant LOW transcript unique_Triplet 41092162 41097448 5287 2 0.0378286362776622 RFvsST 168824 689807370 689638547 no 98.8154514288459 TraesCS1B01G058700 chr1B_41095053 chr1B 41095053 G G A A 4 synonymous_variant LOW transcript unique_Triplet 41092162 41097448 5287 2 0.0378286362776622 RFvsST 168824 689807370 689638547 no 98.8154514288459 TraesCS1B01G059000 chr1B_41642180 chr1B 41642180 G G A A 4 synonymous_variant LOW transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41642248 chr1B 41642248 G G A A 4 synonymous_variant LOW transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41641714 chr1B 41641714 T A C C,A 6 downstream_gene_variant MODIFIER transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41641824 chr1B 41641824 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41641877 chr1B 41641877 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41642030 chr1B 41642030 C C G G 4 missense_variant MODERATE transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41642031 chr1B 41642031 T T A A 4 missense_variant MODERATE transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G059000 chr1B_41642210 chr1B 41642210 C C A A 4 synonymous_variant LOW transcript unique_Triplet 41641891 41644205 2315 8 0.345572354211663 RFvsST 168824 689807370 689638547 no 80.4347597208538 TraesCS1B01G090300 chr1B_90944613 chr1B 90944613 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 90939325 90944564 5240 1 0.0190839694656489 RFvsST 168824 689807370 689638547 no 339.462080977679 TraesCS1B01G095800 chr1B_99713360 chr1B 99713360 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 99709808 99713252 3445 1 0.0290275761973875 RFvsST 168824 689807370 689638547 no 233.467192490907 TraesCS1B01G099600 chr1B_107133322 chr1B 107133322 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 107133328 107136579 3252 3 0.0922509225092251 RFvsST 168824 689807370 689638547 no 612.403590439834 TraesCS1B01G099600 chr1B_107132688 chr1B 107132688 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 107133328 107136579 3252 3 0.0922509225092251 RFvsST 168824 689807370 689638547 no 612.403590439834 TraesCS1B01G099600 chr1B_107133305 chr1B 107133305 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 107133328 107136579 3252 3 0.0922509225092251 RFvsST 168824 689807370 689638547 no 612.403590439834 TraesCS1B01G099800 chr1B_107153271 chr1B 107153271 C C T T 4 missense_variant MODERATE transcript unique_Triplet 107152463 107153668 1206 1 0.0829187396351575 RFvsST 168824 689807370 689638547 no 54.2670837147394 TraesCS1B01G100200 chr1B_108213469 chr1B 108213469 G G T T 4 splice_region_variant LOW transcript unique_Triplet 108212980 108219121 6142 2 0.0325626831650928 RFvsST 168824 689807370 689638547 no 46.774158711014 TraesCS1B01G100200 chr1B_108219024 chr1B 108219024 G G T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 108212980 108219121 6142 2 0.0325626831650928 RFvsST 168824 689807370 689638547 no 46.774158711014 TraesCS1B01G100800 chr1B_110607725 chr1B 110607725 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 110604203 110607547 3345 3 0.0896860986547085 RFvsST 168824 689807370 689638547 no 67.3500498961412 TraesCS1B01G100800 chr1B_110607549 chr1B 110607549 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 110604203 110607547 3345 3 0.0896860986547085 RFvsST 168824 689807370 689638547 no 67.3500498961412 TraesCS1B01G100800 chr1B_110604346 chr1B 110604346 C C T T 4 synonymous_variant LOW transcript unique_Triplet 110604203 110607547 3345 3 0.0896860986547085 RFvsST 168824 689807370 689638547 no 67.3500498961412 TraesCS1B01G100900 chr1B_110617154 chr1B 110617154 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 110615134 110615499 366 1 0.273224043715847 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G101000 chr1B_110618550 chr1B 110618550 T T C C 4 missense_variant MODERATE transcript unique_Triplet 110617215 110627328 10114 3 0.0296618548546569 RFvsST 168824 689807370 689638547 no 80.8623326568235 TraesCS1B01G101000 chr1B_110618449 chr1B 110618449 T T C C 4 synonymous_variant LOW transcript unique_Triplet 110617215 110627328 10114 3 0.0296618548546569 RFvsST 168824 689807370 689638547 no 80.8623326568235 TraesCS1B01G101000 chr1B_110618500 chr1B 110618500 T T C C 4 synonymous_variant LOW transcript unique_Triplet 110617215 110627328 10114 3 0.0296618548546569 RFvsST 168824 689807370 689638547 no 80.8623326568235 TraesCS1B01G101600 chr1B_111263870 chr1B 111263870 A A G G 4 synonymous_variant LOW transcript unique_Triplet 111260762 111265289 4528 1 0.0220848056537102 RFvsST 168824 689807370 689638547 no 49.4892313337327 TraesCS1B01G101700 chr1B_111368363 chr1B 111368363 A A C C 4 synonymous_variant LOW transcript unique_Triplet 111368141 111371897 3757 1 0.0266169816342827 RFvsST 168824 689807370 689638547 no 383.370540821579 TraesCS1B01G101800 chr1B_111670695 chr1B 111670695 T T C C 4 synonymous_variant LOW transcript unique_Triplet 111669534 111670815 1282 5 0.390015600624025 RFvsST 168824 689807370 689638547 no 94.3371100197032 TraesCS1B01G101800 chr1B_111670109 chr1B 111670109 G G A A 4 synonymous_variant LOW transcript unique_Triplet 111669534 111670815 1282 5 0.390015600624025 RFvsST 168824 689807370 689638547 no 94.3371100197032 TraesCS1B01G101800 chr1B_111670199 chr1B 111670199 C C G G 4 synonymous_variant LOW transcript unique_Triplet 111669534 111670815 1282 5 0.390015600624025 RFvsST 168824 689807370 689638547 no 94.3371100197032 TraesCS1B01G101800 chr1B_111670241 chr1B 111670241 C C T T 4 synonymous_variant LOW transcript unique_Triplet 111669534 111670815 1282 5 0.390015600624025 RFvsST 168824 689807370 689638547 no 94.3371100197032 TraesCS1B01G101800 chr1B_111670575 chr1B 111670575 C C T T 4 synonymous_variant LOW transcript unique_Triplet 111669534 111670815 1282 5 0.390015600624025 RFvsST 168824 689807370 689638547 no 94.3371100197032 TraesCS1B01G102000 chr1B_111972246 chr1B 111972246 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 111972307 111972690 384 1 0.260416666666667 RFvsST 168824 689807370 689638547 no 97.7389444523567 TraesCS1B01G102200 chr1B_112203625 chr1B 112203625 G A G A 3 synonymous_variant LOW transcript unique_Triplet 112202780 112210544 7765 4 0.051513200257566 RFvsST 168824 689807370 689638547 no 227.52255220415 TraesCS1B01G102200 chr1B_112204756 chr1B 112204756 G T G T 3 missense_variant MODERATE transcript unique_Triplet 112202780 112210544 7765 4 0.051513200257566 RFvsST 168824 689807370 689638547 no 227.52255220415 TraesCS1B01G102200 chr1B_112203158 chr1B 112203158 A A G G 4 synonymous_variant LOW transcript unique_Triplet 112202780 112210544 7765 4 0.051513200257566 RFvsST 168824 689807370 689638547 no 227.52255220415 TraesCS1B01G102200 chr1B_112203593 chr1B 112203593 A A C C 4 synonymous_variant LOW transcript unique_Triplet 112202780 112210544 7765 4 0.051513200257566 RFvsST 168824 689807370 689638547 no 227.52255220415 TraesCS1B01G103800 chr1B_113570297 chr1B 113570297 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 113566959 113567999 1041 1 0.0960614793467819 RFvsST 168824 689807370 689638547 no 115.190942338249 TraesCS1B01G107200 chr1B_119119964 chr1B 119119964 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 119120918 119129095 8178 2 0.0244558571777941 RFvsST 168824 689807370 689638547 no 54.0081293237108 TraesCS1B01G107200 chr1B_119118040 chr1B 119118040 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 119120918 119129095 8178 2 0.0244558571777941 RFvsST 168824 689807370 689638547 no 54.0081293237108 TraesCS1B01G112700 chr1B_130643350 chr1B 130643350 C C T T 4 missense_variant MODERATE transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130637632 chr1B 130637632 T T G G 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130640870 chr1B 130640870 T T C C 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130637668 chr1B 130637668 A A G G 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130643087 chr1B 130643087 A A C C 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130636971 chr1B 130636971 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130643816 chr1B 130643816 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130636914 chr1B 130636914 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130636888 chr1B 130636888 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130643081 chr1B 130643081 A A G G 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130636819 chr1B 130636819 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130643399 chr1B 130643399 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130639921 chr1B 130639921 G G A A 4 synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G112700 chr1B_130640825 chr1B 130640825 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 130636979 130643381 6403 14 0.218647508980166 RFvsST 168824 689807370 689638547 no 269.02581477787 TraesCS1B01G113400 chr1B_132936301 chr1B 132936301 G G A A 4 synonymous_variant LOW transcript unique_Triplet 132933806 132937588 3783 4 0.105736188210415 RFvsST 168824 689807370 689638547 no 280.270253745537 TraesCS1B01G113400 chr1B_132935315 chr1B 132935315 T G T G 3 missense_variant MODERATE transcript unique_Triplet 132933806 132937588 3783 4 0.105736188210415 RFvsST 168824 689807370 689638547 no 280.270253745537 TraesCS1B01G113400 chr1B_132935316 chr1B 132935316 G T G T 3 missense_variant MODERATE transcript unique_Triplet 132933806 132937588 3783 4 0.105736188210415 RFvsST 168824 689807370 689638547 no 280.270253745537 TraesCS1B01G113400 chr1B_132937505 chr1B 132937505 C C A A 4 synonymous_variant LOW transcript unique_Triplet 132933806 132937588 3783 4 0.105736188210415 RFvsST 168824 689807370 689638547 no 280.270253745537 TraesCS1B01G113700 chr1B_133076239 chr1B 133076239 C C T T 4 missense_variant MODERATE transcript non_Triplet 133075678 133076442 765 1 0.130718954248366 RFvsST 168824 689807370 689638547 no 32.6595776476034 TraesCS1B01G113800 chr1B_133106929 chr1B 133106929 T T C C 4 missense_variant MODERATE transcript unique_Triplet 133106121 133107059 939 1 0.106496272630458 RFvsST 168824 689807370 689638547 no 154.533743991869 TraesCS1B01G114100 chr1B_133125498 chr1B 133125498 T T C C 4 missense_variant MODERATE transcript non_Triplet 133125173 133128733 3561 1 0.02808199943836 RFvsST 168824 689807370 689638547 no 22.5152085888421 TraesCS1B01G117300 chr1B_137453075 chr1B 137453075 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 137449591 137450610 1020 1 0.0980392156862745 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G125400 chr1B_152524487 chr1B 152524487 C T C T 3 synonymous_variant LOW transcript unique_Triplet 152522521 152524570 2050 1 0.0487804878048781 RFvsST 168824 689807370 689638547 no 1557.60509027625 TraesCS1B01G126300 chr1B_154168330 chr1B 154168330 T T G G 4 missense_variant MODERATE transcript unique_Triplet 154165181 154170203 5023 1 0.0199084212621939 RFvsST 168824 689807370 689638547 no 24.7772301436266 TraesCS1B01G126500 chr1B_154594698 chr1B 154594698 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 154594665 154599020 4356 1 0.0229568411386593 RFvsST 168824 689807370 689638547 no 1048.16507541388 TraesCS1B01G128200 chr1B_157278120 chr1B 157278120 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 157278374 157280029 1656 1 0.0603864734299517 RFvsST 168824 689807370 689638547 no 192.986849513839 TraesCS1B01G138200 chr1B_178098032 chr1B 178098032 C C T T 4 stop_gained HIGH transcript unique_Triplet 178096134 178098388 2255 1 0.0443458980044346 RFvsST 168824 689807370 689638547 no 116.769661289042 TraesCS1B01G150900 chr1B_234251893 chr1B 234251893 C A C A 3 missense_variant MODERATE transcript non_Triplet 234251801 234253923 2123 1 0.0471031559114461 RFvsST 168824 689807370 689638547 no 40.052759477852 TraesCS1B01G153400 chr1B_250426540 chr1B 250426540 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 250408856 250426353 17498 1 0.0057149388501543 RFvsST 168824 689807370 689638547 no 436.954559277576 TraesCS1B01G155600 chr1B_263270188 chr1B 263270188 C C A A 4 missense_variant MODERATE transcript non_Triplet 263269896 263275897 6002 1 0.0166611129623459 RFvsST 168824 689807370 689638547 no 62.2965789536948 TraesCS1B01G156900 chr1B_265289334 chr1B 265289334 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 265292541 265298840 6300 1 0.0158730158730159 RFvsST 168824 689807370 689638547 no 15.0762428915945 TraesCS1B01G162300 chr1B_280167290 chr1B 280167290 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 280162058 280167311 5254 2 0.0380662352493338 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G162300 chr1B_280167291 chr1B 280167291 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 280162058 280167311 5254 2 0.0380662352493338 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G165100 chr1B_288395926 chr1B 288395926 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 288393009 288395826 2818 1 0.035486160397445 RFvsST 168824 689807370 689638547 no 102.568684928313 TraesCS1B01G165500 chr1B_288807664 chr1B 288807664 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 288800146 288805854 5709 1 0.0175162024873008 RFvsST 168824 689807370 689638547 no 50.393782529066 TraesCS1B01G165600 chr1B_288810044 chr1B 288810044 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 288809186 288811407 2222 1 0.045004500450045 RFvsST 168824 689807370 689638547 no 342.892068587036 TraesCS1B01G165800 chr1B_288959774 chr1B 288959774 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 288959819 288960283 465 1 0.21505376344086 RFvsST 168824 689807370 689638547 no 94.4143704684298 TraesCS1B01G165900 chr1B_289081047 chr1B 289081047 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 289078414 289088434 10021 2 0.0199580880151681 RFvsST 168824 689807370 689638547 no 37.9951849271143 TraesCS1B01G165900 chr1B_289078356 chr1B 289078356 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 289078414 289088434 10021 2 0.0199580880151681 RFvsST 168824 689807370 689638547 no 37.9951849271143 TraesCS1B01G166100 chr1B_289524646 chr1B 289524646 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 289522490 289524642 2153 1 0.0464468183929401 RFvsST 168824 689807370 689638547 no 83.8169878877175 TraesCS1B01G166300 chr1B_292346576 chr1B 292346576 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 292341789 292343121 1333 4 0.300075018754689 RFvsST 168824 689807370 689638547 no 293.527139170438 TraesCS1B01G166300 chr1B_292341896 chr1B 292341896 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 292341789 292343121 1333 4 0.300075018754689 RFvsST 168824 689807370 689638547 no 293.527139170438 TraesCS1B01G166300 chr1B_292346577 chr1B 292346577 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 292341789 292343121 1333 4 0.300075018754689 RFvsST 168824 689807370 689638547 no 293.527139170438 TraesCS1B01G166300 chr1B_292347970 chr1B 292347970 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 292341789 292343121 1333 4 0.300075018754689 RFvsST 168824 689807370 689638547 no 293.527139170438 TraesCS1B01G166400 chr1B_292350102 chr1B 292350102 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 292348817 292349283 467 1 0.214132762312634 RFvsST 168824 689807370 689638547 no 11.4167157272477 TraesCS1B01G166700 chr1B_292422924 chr1B 292422924 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 292423143 292423608 466 1 0.214592274678112 RFvsST 168824 689807370 689638547 no 21.2073204134547 TraesCS1B01G169600 chr1B_300950024 chr1B 300950024 C A C A 3 missense_variant MODERATE transcript unique_Triplet 300949109 300957528 8420 1 0.0118764845605701 RFvsST 168824 689807370 689638547 no 336.537111410181 TraesCS1B01G170600 chr1B_302759150 chr1B 302759150 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 302759423 302763584 4162 1 0.0240269101393561 RFvsST 168824 689807370 689638547 no 115.061781947736 TraesCS1B01G178900 chr1B_324340409 chr1B 324340409 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 324342341 324358404 16064 1 0.00622509960159363 RFvsST 168824 689807370 689638547 no 27.9890526998552 TraesCS1B01G179100 chr1B_324781043 chr1B 324781043 G A G A 3 synonymous_variant LOW transcript unique_Triplet 324778723 324781317 2595 1 0.0385356454720617 RFvsST 168824 689807370 689638547 no 41.4181876261538 TraesCS1B01G180700 chr1B_327355935 chr1B 327355935 C C T T 4 synonymous_variant LOW transcript unique_Triplet 327354240 327358581 4342 1 0.0230308613542146 RFvsST 168824 689807370 689638547 no 49.0158050175154 TraesCS1B01G180900 chr1B_327483314 chr1B 327483314 A A C C 4 missense_variant MODERATE transcript unique_Triplet 327478319 327483709 5391 5 0.0927471712112781 RFvsST 168824 689807370 689638547 no 551.941071727554 TraesCS1B01G180900 chr1B_327478883 chr1B 327478883 G G A A 4 synonymous_variant LOW transcript unique_Triplet 327478319 327483709 5391 5 0.0927471712112781 RFvsST 168824 689807370 689638547 no 551.941071727554 TraesCS1B01G180900 chr1B_327483469 chr1B 327483469 T T C C 4 missense_variant MODERATE transcript unique_Triplet 327478319 327483709 5391 5 0.0927471712112781 RFvsST 168824 689807370 689638547 no 551.941071727554 TraesCS1B01G180900 chr1B_327482997 chr1B 327482997 G T G T 3 missense_variant MODERATE transcript unique_Triplet 327478319 327483709 5391 5 0.0927471712112781 RFvsST 168824 689807370 689638547 no 551.941071727554 TraesCS1B01G180900 chr1B_327479863 chr1B 327479863 T T C C 4 synonymous_variant LOW transcript unique_Triplet 327478319 327483709 5391 5 0.0927471712112781 RFvsST 168824 689807370 689638547 no 551.941071727554 TraesCS1B01G181000 chr1B_327575335 chr1B 327575335 G G A A 4 synonymous_variant LOW transcript unique_Triplet 327575252 327579098 3847 4 0.103977125032493 RFvsST 168824 689807370 689638547 no 144.906481437492 TraesCS1B01G181000 chr1B_327576740 chr1B 327576740 C C T T 4 missense_variant MODERATE transcript unique_Triplet 327575252 327579098 3847 4 0.103977125032493 RFvsST 168824 689807370 689638547 no 144.906481437492 TraesCS1B01G181000 chr1B_327576597 chr1B 327576597 T T C C 4 synonymous_variant LOW transcript unique_Triplet 327575252 327579098 3847 4 0.103977125032493 RFvsST 168824 689807370 689638547 no 144.906481437492 TraesCS1B01G181000 chr1B_327575098 chr1B 327575098 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 327575252 327579098 3847 4 0.103977125032493 RFvsST 168824 689807370 689638547 no 144.906481437492 TraesCS1B01G181100 chr1B_327840562 chr1B 327840562 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 327831608 327840548 8941 1 0.0111844312716698 RFvsST 168824 689807370 689638547 no 25.41160544039 TraesCS1B01G181200 chr1B_327842564 chr1B 327842564 C C T T 4 synonymous_variant LOW transcript unique_Triplet 327842474 327845259 2786 2 0.0717875089734386 RFvsST 168824 689807370 689638547 no 101.846683270309 TraesCS1B01G181200 chr1B_327842672 chr1B 327842672 T T A A 4 synonymous_variant LOW transcript unique_Triplet 327842474 327845259 2786 2 0.0717875089734386 RFvsST 168824 689807370 689638547 no 101.846683270309 TraesCS1B01G181600 chr1B_328643536 chr1B 328643536 C T C T 3 synonymous_variant LOW transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181600 chr1B_328642464 chr1B 328642464 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181600 chr1B_328642115 chr1B 328642115 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181600 chr1B_328642344 chr1B 328642344 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181600 chr1B_328645331 chr1B 328645331 T C T C 3 synonymous_variant LOW transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181600 chr1B_328642510 chr1B 328642510 G A G A 3 synonymous_variant LOW transcript unique_Triplet 328642492 328646170 3679 6 0.16308779559663 RFvsST 168824 689807370 689638547 no 35.5216135490854 TraesCS1B01G181800 chr1B_328821079 chr1B 328821079 A C A C 3 missense_variant MODERATE transcript unique_Triplet 328820817 328826442 5626 5 0.0888730892285816 RFvsST 168824 689807370 689638547 no 36.5711448636169 TraesCS1B01G181800 chr1B_328820882 chr1B 328820882 G G T T 4 missense_variant MODERATE transcript unique_Triplet 328820817 328826442 5626 5 0.0888730892285816 RFvsST 168824 689807370 689638547 no 36.5711448636169 TraesCS1B01G181800 chr1B_328824651 chr1B 328824651 C C T T 4 synonymous_variant LOW transcript unique_Triplet 328820817 328826442 5626 5 0.0888730892285816 RFvsST 168824 689807370 689638547 no 36.5711448636169 TraesCS1B01G181800 chr1B_328823041 chr1B 328823041 T C T C 3 missense_variant MODERATE transcript unique_Triplet 328820817 328826442 5626 5 0.0888730892285816 RFvsST 168824 689807370 689638547 no 36.5711448636169 TraesCS1B01G181800 chr1B_328821070 chr1B 328821070 C C T T 4 missense_variant MODERATE transcript unique_Triplet 328820817 328826442 5626 5 0.0888730892285816 RFvsST 168824 689807370 689638547 no 36.5711448636169 TraesCS1B01G182000 chr1B_328939472 chr1B 328939472 G C G C 3 synonymous_variant LOW transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328942797 chr1B 328942797 A G A G 3 missense_variant MODERATE transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328942636 chr1B 328942636 C G C G 3 synonymous_variant LOW transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328939664 chr1B 328939664 A A G G 4 missense_variant MODERATE transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328939638 chr1B 328939638 C G C G 3 synonymous_variant LOW transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328942832 chr1B 328942832 T C T C 3 synonymous_variant LOW transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182000 chr1B_328939284 chr1B 328939284 A G A G 3 synonymous_variant LOW transcript non_Triplet 328938856 328943795 4940 7 0.1417004048583 RFvsST 168824 689807370 689638547 no 37.4015625780509 TraesCS1B01G182400 chr1B_329379067 chr1B 329379067 T C T C 3 intron_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182400 chr1B_329377173 chr1B 329377173 T C T C 3 intron_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182400 chr1B_329376828 chr1B 329376828 A G A G 3 intron_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182400 chr1B_329379639 chr1B 329379639 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182400 chr1B_329376474 chr1B 329376474 G C G C 3 intron_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182400 chr1B_329376960 chr1B 329376960 C T C T 3 intron_variant MODIFIER transcript non_Triplet 329372861 329379594 6734 6 0.0891000891000891 RFvsST 168824 689807370 689638547 no 2179.222443531 TraesCS1B01G182500 chr1B_329486674 chr1B 329486674 C T C T 3 synonymous_variant LOW transcript unique_Triplet 329478217 329487740 9524 4 0.0419991600167997 RFvsST 168824 689807370 689638547 no 564.478628843077 TraesCS1B01G182500 chr1B_329485542 chr1B 329485542 A G A G 3 synonymous_variant LOW transcript unique_Triplet 329478217 329487740 9524 4 0.0419991600167997 RFvsST 168824 689807370 689638547 no 564.478628843077 TraesCS1B01G182500 chr1B_329478160 chr1B 329478160 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 329478217 329487740 9524 4 0.0419991600167997 RFvsST 168824 689807370 689638547 no 564.478628843077 TraesCS1B01G182500 chr1B_329486225 chr1B 329486225 G T G T 3 missense_variant MODERATE transcript unique_Triplet 329478217 329487740 9524 4 0.0419991600167997 RFvsST 168824 689807370 689638547 no 564.478628843077 TraesCS1B01G183600 chr1B_330499061 chr1B 330499061 T G T G 3 synonymous_variant LOW transcript unique_Triplet 330498927 330500914 1988 1 0.0503018108651912 RFvsST 168824 689807370 689638547 no 52.9493106630318 TraesCS1B01G184000 chr1B_330625816 chr1B 330625816 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 330625310 330625774 465 1 0.21505376344086 RFvsST 168824 689807370 689638547 no 84.8899147927094 TraesCS1B01G187100 chr1B_334315319 chr1B 334315319 G T G T 3 missense_variant MODERATE transcript unique_Triplet 334312557 334321940 9384 1 0.0106564364876385 RFvsST 168824 689807370 689638547 no 448.454281863365 TraesCS1B01G195200 chr1B_350392183 chr1B 350392183 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 350391648 350396669 5022 1 0.0199123855037834 RFvsST 168824 689807370 689638547 no 101.554727581096 TraesCS1B01G198700 chr1B_356871631 chr1B 356871631 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 356871104 356872612 1509 1 0.0662690523525514 RFvsST 168824 689807370 689638547 no 330.998668875929 TraesCS1B01G205800 chr1B_371139181 chr1B 371139181 G G T T 4 missense_variant MODERATE transcript unique_Triplet 371138841 371142537 3697 1 0.0270489586150933 RFvsST 168824 689807370 689638547 no 134.300501743516 TraesCS1B01G206800 chr1B_374012426 chr1B 374012426 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 374016158 374017099 942 1 0.106157112526539 RFvsST 168824 689807370 689638547 no 1313.36785797374 TraesCS1B01G209100 chr1B_378838727 chr1B 378838727 C C T T 4 missense_variant MODERATE transcript unique_Triplet 378837882 378838943 1062 1 0.0941619585687382 RFvsST 168824 689807370 689638547 no 123.963417381246 TraesCS1B01G211900 chr1B_385214635 chr1B 385214635 C T C T 3 missense_variant MODERATE transcript unique_Triplet 385213399 385215799 2401 2 0.0832986255726781 RFvsST 168824 689807370 689638547 no 121.055259129267 TraesCS1B01G211900 chr1B_385214634 chr1B 385214634 T A T A 3 missense_variant MODERATE transcript unique_Triplet 385213399 385215799 2401 2 0.0832986255726781 RFvsST 168824 689807370 689638547 no 121.055259129267 TraesCS1B01G216400 chr1B_392149842 chr1B 392149842 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 392150618 392151960 1343 1 0.0744601638123604 RFvsST 168824 689807370 689638547 no 313.769053540311 TraesCS1B01G226300 chr1B_406350825 chr1B 406350825 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406358575 chr1B 406358575 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406342128 chr1B 406342128 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406346887 chr1B 406346887 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406347770 chr1B 406347770 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406340246 chr1B 406340246 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226300 chr1B_406352547 chr1B 406352547 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 406338524 406358494 19971 7 0.0350508236943568 RFvsST 168824 689807370 689638547 no 322.116978867531 TraesCS1B01G226400 chr1B_407293659 chr1B 407293659 G G A A 4 missense_variant MODERATE transcript unique_Triplet 407291009 407294285 3277 3 0.091547146780592 RFvsST 168824 689807370 689638547 no 658.769978472545 TraesCS1B01G226400 chr1B_407294108 chr1B 407294108 T T C C 4 synonymous_variant LOW transcript unique_Triplet 407291009 407294285 3277 3 0.091547146780592 RFvsST 168824 689807370 689638547 no 658.769978472545 TraesCS1B01G226400 chr1B_407291486 chr1B 407291486 T T C C 4 synonymous_variant LOW transcript unique_Triplet 407291009 407294285 3277 3 0.091547146780592 RFvsST 168824 689807370 689638547 no 658.769978472545 TraesCS1B01G226800 chr1B_407544189 chr1B 407544189 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 407544331 407546997 2667 2 0.0749906261717285 RFvsST 168824 689807370 689638547 no 335.782427264809 TraesCS1B01G226800 chr1B_407544263 chr1B 407544263 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 407544331 407546997 2667 2 0.0749906261717285 RFvsST 168824 689807370 689638547 no 335.782427264809 TraesCS1B01G227100 chr1B_407772321 chr1B 407772321 G G A A 4 missense_variant MODERATE transcript unique_Triplet 407771956 407773500 1545 2 0.129449838187702 RFvsST 168824 689807370 689638547 no 251.122848565669 TraesCS1B01G227100 chr1B_407773109 chr1B 407773109 C T C T 3 synonymous_variant LOW transcript unique_Triplet 407771956 407773500 1545 2 0.129449838187702 RFvsST 168824 689807370 689638547 no 251.122848565669 TraesCS1B01G227400 chr1B_408656937 chr1B 408656937 C T C T 3 missense_variant MODERATE transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227400 chr1B_408661554 chr1B 408661554 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227400 chr1B_408658152 chr1B 408658152 T C T C 3 missense_variant MODERATE transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227400 chr1B_408660975 chr1B 408660975 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227400 chr1B_408656773 chr1B 408656773 C T C T 3 synonymous_variant LOW transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227400 chr1B_408658546 chr1B 408658546 G G A A 4 synonymous_variant LOW transcript non_Triplet 408656093 408660568 4476 6 0.134048257372654 RFvsST 168824 689807370 689638547 no 220.304732146012 TraesCS1B01G227500 chr1B_408662387 chr1B 408662387 C C T T 4 synonymous_variant LOW transcript non_Triplet 408661919 408668934 7016 2 0.0285062713797035 RFvsST 168824 689807370 689638547 no 93.2424454099759 TraesCS1B01G227500 chr1B_408666574 chr1B 408666574 T T C C 4 synonymous_variant LOW transcript non_Triplet 408661919 408668934 7016 2 0.0285062713797035 RFvsST 168824 689807370 689638547 no 93.2424454099759 TraesCS1B01G227800 chr1B_409599382 chr1B 409599382 A A G G 4 missense_variant MODERATE transcript unique_Triplet 409598992 409600045 1054 1 0.094876660341556 RFvsST 168824 689807370 689638547 no 49.7315717487804 TraesCS1B01G228100 chr1B_409628045 chr1B 409628045 A G A G 3 synonymous_variant LOW transcript unique_Triplet 409627893 409629971 2079 3 0.144300144300144 RFvsST 168824 689807370 689638547 no 344.945118098735 TraesCS1B01G228100 chr1B_409630008 chr1B 409630008 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 409627893 409629971 2079 3 0.144300144300144 RFvsST 168824 689807370 689638547 no 344.945118098735 TraesCS1B01G228100 chr1B_409630041 chr1B 409630041 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 409627893 409629971 2079 3 0.144300144300144 RFvsST 168824 689807370 689638547 no 344.945118098735 TraesCS1B01G228400 chr1B_409677871 chr1B 409677871 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 409671779 409673471 1693 3 0.177200236266982 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G228400 chr1B_409677907 chr1B 409677907 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 409671779 409673471 1693 3 0.177200236266982 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G228400 chr1B_409677941 chr1B 409677941 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 409671779 409673471 1693 3 0.177200236266982 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G229200 chr1B_411570163 chr1B 411570163 A G A G 3 missense_variant MODERATE transcript non_Triplet 411568098 411574187 6090 1 0.0164203612479475 RFvsST 168824 689807370 689638547 no 151.355941736916 TraesCS1B01G233500 chr1B_419203671 chr1B 419203671 T C T C 3 synonymous_variant LOW transcript unique_Triplet 419201194 419203935 2742 5 0.182348650619985 RFvsST 168824 689807370 689638547 no 97.2493936059213 TraesCS1B01G233500 chr1B_419204374 chr1B 419204374 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 419201194 419203935 2742 5 0.182348650619985 RFvsST 168824 689807370 689638547 no 97.2493936059213 TraesCS1B01G233500 chr1B_419203683 chr1B 419203683 G A G A 3 synonymous_variant LOW transcript unique_Triplet 419201194 419203935 2742 5 0.182348650619985 RFvsST 168824 689807370 689638547 no 97.2493936059213 TraesCS1B01G233500 chr1B_419204367 chr1B 419204367 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 419201194 419203935 2742 5 0.182348650619985 RFvsST 168824 689807370 689638547 no 97.2493936059213 TraesCS1B01G233500 chr1B_419204235 chr1B 419204235 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 419201194 419203935 2742 5 0.182348650619985 RFvsST 168824 689807370 689638547 no 97.2493936059213 TraesCS1B01G234100 chr1B_419982291 chr1B 419982291 C G C G 3 missense_variant MODERATE transcript non_Triplet 419974562 419983006 8445 2 0.0236826524570752 RFvsST 168824 689807370 689638547 no 133.566002279207 TraesCS1B01G234100 chr1B_419982495 chr1B 419982495 G A G A 3 synonymous_variant LOW transcript non_Triplet 419974562 419983006 8445 2 0.0236826524570752 RFvsST 168824 689807370 689638547 no 133.566002279207 TraesCS1B01G234400 chr1B_420355668 chr1B 420355668 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420354080 chr1B 420354080 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420359358 chr1B 420359358 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420357469 chr1B 420357469 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420356696 chr1B 420356696 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420353035 chr1B 420353035 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420353340 chr1B 420353340 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420355285 chr1B 420355285 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420355351 chr1B 420355351 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420355330 chr1B 420355330 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234400 chr1B_420362120 chr1B 420362120 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 420352238 420362309 10072 11 0.109213661636219 RFvsST 168824 689807370 689638547 no 1624.37832664268 TraesCS1B01G234500 chr1B_420365051 chr1B 420365051 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 420365354 420366443 1090 3 0.275229357798165 RFvsST 168824 689807370 689638547 no 61.6820357118394 TraesCS1B01G234500 chr1B_420365144 chr1B 420365144 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 420365354 420366443 1090 3 0.275229357798165 RFvsST 168824 689807370 689638547 no 61.6820357118394 TraesCS1B01G234500 chr1B_420366423 chr1B 420366423 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 420365354 420366443 1090 3 0.275229357798165 RFvsST 168824 689807370 689638547 no 61.6820357118394 TraesCS1B01G234700 chr1B_420415881 chr1B 420415881 T G T G 3 synonymous_variant LOW transcript nonUnique_Triplet 420415552 420416661 1110 1 0.0900900900900901 RFvsST 168824 689807370 689638547 no 187.296245512579 TraesCS1B01G243400 chr1B_432377289 chr1B 432377289 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 432376657 432377160 504 2 0.396825396825397 RFvsST 168824 689807370 689638547 no 99.6189191771068 TraesCS1B01G243400 chr1B_432376783 chr1B 432376783 G G A A 4 missense_variant MODERATE transcript unique_Triplet 432376657 432377160 504 2 0.396825396825397 RFvsST 168824 689807370 689638547 no 99.6189191771068 TraesCS1B01G243800 chr1B_432824568 chr1B 432824568 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 432821423 432824828 3406 2 0.0587199060481503 RFvsST 168824 689807370 689638547 no 339.235718893219 TraesCS1B01G243800 chr1B_432821849 chr1B 432821849 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 432821423 432824828 3406 2 0.0587199060481503 RFvsST 168824 689807370 689638547 no 339.235718893219 TraesCS1B01G244300 chr1B_433598893 chr1B 433598893 G G C C 4 synonymous_variant LOW transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433600899 chr1B 433600899 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433598080 chr1B 433598080 A A G G 4 synonymous_variant LOW transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433600821 chr1B 433600821 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433600852 chr1B 433600852 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433601043 chr1B 433601043 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433598659 chr1B 433598659 A A G G 4 synonymous_variant LOW transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G244300 chr1B_433600984 chr1B 433600984 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 433597905 433599333 1429 8 0.559832050384884 RFvsST 168824 689807370 689638547 no 361.320121374485 TraesCS1B01G247000 chr1B_437551468 chr1B 437551468 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 437551704 437553929 2226 1 0.0449236298292902 RFvsST 168824 689807370 689638547 no 175.059621343162 TraesCS1B01G247100 chr1B_437604049 chr1B 437604049 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 437598701 437603908 5208 1 0.0192012288786482 RFvsST 168824 689807370 689638547 no 96.3526410148603 TraesCS1B01G247300 chr1B_438034129 chr1B 438034129 G A G A 3 missense_variant MODERATE transcript unique_Triplet 438034095 438036529 2435 1 0.0410677618069815 RFvsST 168824 689807370 689638547 no 39.2144977350008 TraesCS1B01G248200 chr1B_439129891 chr1B 439129891 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 439127550 439128755 1206 2 0.165837479270315 RFvsST 168824 689807370 689638547 no 747.269904628759 TraesCS1B01G248200 chr1B_439128647 chr1B 439128647 C T C T 3 missense_variant MODERATE transcript unique_Triplet 439127550 439128755 1206 2 0.165837479270315 RFvsST 168824 689807370 689638547 no 747.269904628759 TraesCS1B01G248300 chr1B_439433193 chr1B 439433193 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 439430150 439433121 2972 3 0.100942126514132 RFvsST 168824 689807370 689638547 no 71.6684817696447 TraesCS1B01G248300 chr1B_439433025 chr1B 439433025 C T C T 3 synonymous_variant LOW transcript non_Triplet 439430150 439433121 2972 3 0.100942126514132 RFvsST 168824 689807370 689638547 no 71.6684817696447 TraesCS1B01G248300 chr1B_439430604 chr1B 439430604 T C T C 3 missense_variant MODERATE transcript non_Triplet 439430150 439433121 2972 3 0.100942126514132 RFvsST 168824 689807370 689638547 no 71.6684817696447 TraesCS1B01G248800 chr1B_440268781 chr1B 440268781 G C G C 3 synonymous_variant LOW transcript unique_Triplet 440266067 440282286 16220 2 0.0123304562268804 RFvsST 168824 689807370 689638547 no 378.388967829445 TraesCS1B01G248800 chr1B_440267762 chr1B 440267762 G A G A 3 missense_variant MODERATE transcript unique_Triplet 440266067 440282286 16220 2 0.0123304562268804 RFvsST 168824 689807370 689638547 no 378.388967829445 TraesCS1B01G249100 chr1B_441629919 chr1B 441629919 C G C G 3 synonymous_variant LOW transcript unique_Triplet 441628367 441631194 2828 1 0.0353606789250354 RFvsST 168824 689807370 689638547 no 210.271625572141 TraesCS1B01G250000 chr1B_442165706 chr1B 442165706 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 442167938 442172651 4714 1 0.0212134068731438 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G250300 chr1B_442206683 chr1B 442206683 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 442198705 442203671 4967 1 0.0201328769881216 RFvsST 168824 689807370 689638547 no 101.629678687416 TraesCS1B01G251000 chr1B_443468519 chr1B 443468519 A C A C 3 missense_variant MODERATE transcript unique_Triplet 443466557 443491432 24876 1 0.00401993889692877 RFvsST 168824 689807370 689638547 no 74.1774553438344 TraesCS1B01G251300 chr1B_443996462 chr1B 443996462 A G A G 3 synonymous_variant LOW transcript unique_Triplet 443994588 443998238 3651 5 0.136948781155848 RFvsST 168824 689807370 689638547 no 694.236676955215 TraesCS1B01G251300 chr1B_443995798 chr1B 443995798 G A G A 3 missense_variant MODERATE transcript unique_Triplet 443994588 443998238 3651 5 0.136948781155848 RFvsST 168824 689807370 689638547 no 694.236676955215 TraesCS1B01G251300 chr1B_443996778 chr1B 443996778 A G A G 3 missense_variant MODERATE transcript unique_Triplet 443994588 443998238 3651 5 0.136948781155848 RFvsST 168824 689807370 689638547 no 694.236676955215 TraesCS1B01G251300 chr1B_443997720 chr1B 443997720 C A C A 3 missense_variant MODERATE transcript unique_Triplet 443994588 443998238 3651 5 0.136948781155848 RFvsST 168824 689807370 689638547 no 694.236676955215 TraesCS1B01G251300 chr1B_443996777 chr1B 443996777 A T A T 3 synonymous_variant LOW transcript unique_Triplet 443994588 443998238 3651 5 0.136948781155848 RFvsST 168824 689807370 689638547 no 694.236676955215 TraesCS1B01G251400 chr1B_443998681 chr1B 443998681 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 444002012 444003534 1523 1 0.0656598818122127 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G251800 chr1B_444681664 chr1B 444681664 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 444681502 444683080 1579 2 0.126662444585181 RFvsST 168824 689807370 689638547 no 59.3100892694809 TraesCS1B01G251800 chr1B_444681633 chr1B 444681633 C A C A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 444681502 444683080 1579 2 0.126662444585181 RFvsST 168824 689807370 689638547 no 59.3100892694809 TraesCS1B01G251900 chr1B_444686973 chr1B 444686973 T T C C 4 missense_variant MODERATE transcript unique_Triplet 444686817 444688525 1709 3 0.175541252194266 RFvsST 168824 689807370 689638547 no 36.4363547411703 TraesCS1B01G251900 chr1B_444686962 chr1B 444686962 C G C G 3 missense_variant MODERATE transcript unique_Triplet 444686817 444688525 1709 3 0.175541252194266 RFvsST 168824 689807370 689638547 no 36.4363547411703 TraesCS1B01G251900 chr1B_444687871 chr1B 444687871 G G C C 4 missense_variant MODERATE transcript unique_Triplet 444686817 444688525 1709 3 0.175541252194266 RFvsST 168824 689807370 689638547 no 36.4363547411703 TraesCS1B01G252300 chr1B_444937306 chr1B 444937306 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 444936342 444937384 1043 2 0.191754554170662 RFvsST 168824 689807370 689638547 no 66.7443571704685 TraesCS1B01G252300 chr1B_444937240 chr1B 444937240 C A C A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 444936342 444937384 1043 2 0.191754554170662 RFvsST 168824 689807370 689638547 no 66.7443571704685 TraesCS1B01G252700 chr1B_445430230 chr1B 445430230 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 445430050 445438977 8928 2 0.0224014336917563 RFvsST 168824 689807370 689638547 no 208.905344533524 TraesCS1B01G252700 chr1B_445435585 chr1B 445435585 A G A G 3 synonymous_variant LOW transcript unique_Triplet 445430050 445438977 8928 2 0.0224014336917563 RFvsST 168824 689807370 689638547 no 208.905344533524 TraesCS1B01G252900 chr1B_445746180 chr1B 445746180 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 445742462 445746047 3586 4 0.11154489682097 RFvsST 168824 689807370 689638547 no 351.08800293365 TraesCS1B01G252900 chr1B_445746343 chr1B 445746343 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 445742462 445746047 3586 4 0.11154489682097 RFvsST 168824 689807370 689638547 no 351.08800293365 TraesCS1B01G252900 chr1B_445746117 chr1B 445746117 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 445742462 445746047 3586 4 0.11154489682097 RFvsST 168824 689807370 689638547 no 351.08800293365 TraesCS1B01G252900 chr1B_445746322 chr1B 445746322 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 445742462 445746047 3586 4 0.11154489682097 RFvsST 168824 689807370 689638547 no 351.08800293365 TraesCS1B01G254000 chr1B_448244411 chr1B 448244411 G A G A 3 missense_variant MODERATE transcript non_Triplet 448244392 448248107 3716 2 0.0538213132400431 RFvsST 168824 689807370 689638547 no 782.275566754478 TraesCS1B01G254000 chr1B_448244556 chr1B 448244556 C T C T 3 synonymous_variant LOW transcript non_Triplet 448244392 448248107 3716 2 0.0538213132400431 RFvsST 168824 689807370 689638547 no 782.275566754478 TraesCS1B01G254100 chr1B_448300449 chr1B 448300449 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 448293801 448300250 6450 1 0.0155038759689922 RFvsST 168824 689807370 689638547 no 572.165243821169 TraesCS1B01G254500 chr1B_448742632 chr1B 448742632 C C T T 4 missense_variant MODERATE transcript unique_Triplet 448740185 448742777 2593 1 0.0385653682992673 RFvsST 168824 689807370 689638547 no 122.678405877779 TraesCS1B01G254600 chr1B_448750693 chr1B 448750693 G A G A 3 missense_variant MODERATE transcript unique_Triplet 448744086 448750729 6644 1 0.0150511739915713 RFvsST 168824 689807370 689638547 no 15.4834167318514 TraesCS1B01G254800 chr1B_449391519 chr1B 449391519 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 449387456 449391441 3986 4 0.100351229302559 RFvsST 168824 689807370 689638547 no 160.239806760326 TraesCS1B01G254800 chr1B_449390332 chr1B 449390332 C A C A 3 missense_variant MODERATE transcript unique_Triplet 449387456 449391441 3986 4 0.100351229302559 RFvsST 168824 689807370 689638547 no 160.239806760326 TraesCS1B01G254800 chr1B_449391225 chr1B 449391225 C C T T 4 synonymous_variant LOW transcript unique_Triplet 449387456 449391441 3986 4 0.100351229302559 RFvsST 168824 689807370 689638547 no 160.239806760326 TraesCS1B01G254800 chr1B_449391204 chr1B 449391204 G A G A 3 synonymous_variant LOW transcript unique_Triplet 449387456 449391441 3986 4 0.100351229302559 RFvsST 168824 689807370 689638547 no 160.239806760326 TraesCS1B01G255100 chr1B_449707921 chr1B 449707921 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 449699399 449707792 8394 5 0.0595663569216107 RFvsST 168824 689807370 689638547 no 267.599721033864 TraesCS1B01G255100 chr1B_449706111 chr1B 449706111 A A G G 4 missense_variant MODERATE transcript unique_Triplet 449699399 449707792 8394 5 0.0595663569216107 RFvsST 168824 689807370 689638547 no 267.599721033864 TraesCS1B01G255100 chr1B_449707871 chr1B 449707871 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 449699399 449707792 8394 5 0.0595663569216107 RFvsST 168824 689807370 689638547 no 267.599721033864 TraesCS1B01G255100 chr1B_449707552 chr1B 449707552 G A G A 3 synonymous_variant LOW transcript unique_Triplet 449699399 449707792 8394 5 0.0595663569216107 RFvsST 168824 689807370 689638547 no 267.599721033864 TraesCS1B01G255100 chr1B_449704297 chr1B 449704297 A A C C 4 missense_variant MODERATE transcript unique_Triplet 449699399 449707792 8394 5 0.0595663569216107 RFvsST 168824 689807370 689638547 no 267.599721033864 TraesCS1B01G256400 chr1B_451920975 chr1B 451920975 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 451921783 451923033 1251 1 0.0799360511590727 RFvsST 168824 689807370 689638547 no 18.7434616307652 TraesCS1B01G258700 chr1B_456185301 chr1B 456185301 A A G G 4 missense_variant MODERATE transcript unique_Triplet 456185140 456188206 3067 1 0.032605151613955 RFvsST 168824 689807370 689638547 no 79.0037851064788 TraesCS1B01G260100 chr1B_457463245 chr1B 457463245 G G A A 4 synonymous_variant LOW transcript unique_Triplet 457460421 457471672 11252 1 0.00888730892285816 RFvsST 168824 689807370 689638547 no 89.4625375836181 TraesCS1B01G260400 chr1B_457863950 chr1B 457863950 G A G A 3 intron_variant MODIFIER transcript non_Triplet 457862895 457865615 2721 1 0.0367511944138185 RFvsST 168824 689807370 689638547 no 784.460313964065 TraesCS1B01G260700 chr1B_458265142 chr1B 458265142 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 458263012 458264025 1014 1 0.0986193293885602 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G260800 chr1B_458325366 chr1B 458325366 C T C T 3 missense_variant MODERATE transcript non_Triplet 458325252 458327107 1856 4 0.21551724137931 RFvsST 168824 689807370 689638547 no 91.2917581735404 TraesCS1B01G260800 chr1B_458327113 chr1B 458327113 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 458325252 458327107 1856 4 0.21551724137931 RFvsST 168824 689807370 689638547 no 91.2917581735404 TraesCS1B01G260800 chr1B_458325896 chr1B 458325896 G T G T 3 synonymous_variant LOW transcript non_Triplet 458325252 458327107 1856 4 0.21551724137931 RFvsST 168824 689807370 689638547 no 91.2917581735404 TraesCS1B01G260800 chr1B_458327142 chr1B 458327142 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 458325252 458327107 1856 4 0.21551724137931 RFvsST 168824 689807370 689638547 no 91.2917581735404 TraesCS1B01G261000 chr1B_458633594 chr1B 458633594 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261000 chr1B_458633710 chr1B 458633710 G C G C 3 synonymous_variant LOW transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261000 chr1B_458633867 chr1B 458633867 T C T C 3 missense_variant MODERATE transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261000 chr1B_458633357 chr1B 458633357 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261000 chr1B_458633553 chr1B 458633553 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261000 chr1B_458633538 chr1B 458633538 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 458633378 458634421 1044 6 0.574712643678161 RFvsST 168824 689807370 689638547 no 432.19162662522 TraesCS1B01G261400 chr1B_459925099 chr1B 459925099 G A G A 3 synonymous_variant LOW transcript unique_Triplet 459918260 459925866 7607 2 0.026291573550677 RFvsST 168824 689807370 689638547 no 44.9042450053824 TraesCS1B01G261400 chr1B_459925588 chr1B 459925588 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 459918260 459925866 7607 2 0.026291573550677 RFvsST 168824 689807370 689638547 no 44.9042450053824 TraesCS1B01G261600 chr1B_459928977 chr1B 459928977 C A C A 3 missense_variant MODERATE transcript unique_Triplet 459928940 459933143 4204 3 0.071360608943863 RFvsST 168824 689807370 689638547 no 41.9960497124396 TraesCS1B01G261600 chr1B_459933047 chr1B 459933047 T C T C 3 synonymous_variant LOW transcript unique_Triplet 459928940 459933143 4204 3 0.071360608943863 RFvsST 168824 689807370 689638547 no 41.9960497124396 TraesCS1B01G261600 chr1B_459929949 chr1B 459929949 T C T C 3 synonymous_variant LOW transcript unique_Triplet 459928940 459933143 4204 3 0.071360608943863 RFvsST 168824 689807370 689638547 no 41.9960497124396 TraesCS1B01G261700 chr1B_460146752 chr1B 460146752 G T G T 3 missense_variant MODERATE transcript unique_Triplet 460143279 460146771 3493 2 0.0572573718866304 RFvsST 168824 689807370 689638547 no 67.0199889871204 TraesCS1B01G261700 chr1B_460143125 chr1B 460143125 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 460143279 460146771 3493 2 0.0572573718866304 RFvsST 168824 689807370 689638547 no 67.0199889871204 TraesCS1B01G262000 chr1B_460280510 chr1B 460280510 A C A C 3 synonymous_variant LOW transcript unique_Triplet 460273852 460280920 7069 2 0.0282925449144151 RFvsST 168824 689807370 689638547 no 729.600866224772 TraesCS1B01G262000 chr1B_460275572 chr1B 460275572 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 460273852 460280920 7069 2 0.0282925449144151 RFvsST 168824 689807370 689638547 no 729.600866224772 TraesCS1B01G262600 chr1B_461311681 chr1B 461311681 A G A G 3 missense_variant MODERATE transcript unique_Triplet 461298711 461312212 13502 1 0.00740631017627018 RFvsST 168824 689807370 689638547 no 310.634351038037 TraesCS1B01G263000 chr1B_462795886 chr1B 462795886 C T C T 3 synonymous_variant LOW transcript unique_Triplet 462792412 462795994 3583 1 0.0279095729835334 RFvsST 168824 689807370 689638547 no 72.2418787910852 TraesCS1B01G263700 chr1B_464149101 chr1B 464149101 G T G T 3 synonymous_variant LOW transcript non_Triplet 464146962 464151055 4094 1 0.0244259892525647 RFvsST 168824 689807370 689638547 no 95.900190197701 TraesCS1B01G264300 chr1B_465241276 chr1B 465241276 A A G G 4 missense_variant MODERATE transcript non_Triplet 465239513 465241947 2435 1 0.0410677618069815 RFvsST 168824 689807370 689638547 no 893.627584960452 TraesCS1B01G266600 chr1B_469160915 chr1B 469160915 T C T C 3 synonymous_variant LOW transcript unique_Triplet 469159793 469161676 1884 2 0.106157112526539 RFvsST 168824 689807370 689638547 no 243.959947828474 TraesCS1B01G266600 chr1B_469160206 chr1B 469160206 T C T C 3 missense_variant MODERATE transcript unique_Triplet 469159793 469161676 1884 2 0.106157112526539 RFvsST 168824 689807370 689638547 no 243.959947828474 TraesCS1B01G267000 chr1B_469974682 chr1B 469974682 T C T C 3 missense_variant MODERATE transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267000 chr1B_469977431 chr1B 469977431 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267000 chr1B_469976477 chr1B 469976477 T C T C 3 synonymous_variant LOW transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267000 chr1B_469978497 chr1B 469978497 T G T G 3 missense_variant MODERATE transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267000 chr1B_469974257 chr1B 469974257 G A G A 3 missense_variant MODERATE transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267000 chr1B_469974997 chr1B 469974997 T C T C 3 missense_variant MODERATE transcript unique_Triplet 469972700 469978565 5866 6 0.102284350494374 RFvsST 168824 689807370 689638547 no 583.551437419317 TraesCS1B01G267100 chr1B_469999574 chr1B 469999574 C T C T 3 synonymous_variant LOW transcript unique_Triplet 469999416 470002766 3351 3 0.0895255147717099 RFvsST 168824 689807370 689638547 no 296.238512633883 TraesCS1B01G267100 chr1B_470003076 chr1B 470003076 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469999416 470002766 3351 3 0.0895255147717099 RFvsST 168824 689807370 689638547 no 296.238512633883 TraesCS1B01G267100 chr1B_470003060 chr1B 470003060 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469999416 470002766 3351 3 0.0895255147717099 RFvsST 168824 689807370 689638547 no 296.238512633883 TraesCS1B01G267800 chr1B_470778124 chr1B 470778124 C T C T 3 synonymous_variant LOW transcript unique_Triplet 470777655 470780829 3175 2 0.062992125984252 RFvsST 168824 689807370 689638547 no 272.266183907751 TraesCS1B01G267800 chr1B_470777698 chr1B 470777698 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 470777655 470780829 3175 2 0.062992125984252 RFvsST 168824 689807370 689638547 no 272.266183907751 TraesCS1B01G268000 chr1B_470940952 chr1B 470940952 T C T C 3 missense_variant MODERATE transcript non_Triplet 470940567 470941872 1306 1 0.0765696784073507 RFvsST 168824 689807370 689638547 no 64.065036282991 TraesCS1B01G268300 chr1B_471178080 chr1B 471178080 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471174364 chr1B 471174364 G A G A 3 missense_variant MODERATE transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471174995 chr1B 471174995 T C T C 3 synonymous_variant LOW transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471177999 chr1B 471177999 C T C T 3 missense_variant MODERATE transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471174252 chr1B 471174252 G A G A 3 synonymous_variant LOW transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471178076 chr1B 471178076 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268300 chr1B_471175133 chr1B 471175133 G C G C 3 missense_variant MODERATE transcript unique_Triplet 471173622 471178044 4423 7 0.158263621976034 RFvsST 168824 689807370 689638547 no 177.249269339416 TraesCS1B01G268500 chr1B_471197149 chr1B 471197149 A C A C 3 missense_variant MODERATE transcript unique_Triplet 471193653 471197176 3524 3 0.0851305334846765 RFvsST 168824 689807370 689638547 no 213.343964256684 TraesCS1B01G268500 chr1B_471194010 chr1B 471194010 T C T C 3 synonymous_variant LOW transcript unique_Triplet 471193653 471197176 3524 3 0.0851305334846765 RFvsST 168824 689807370 689638547 no 213.343964256684 TraesCS1B01G268500 chr1B_471193788 chr1B 471193788 G G A A 4 synonymous_variant LOW transcript unique_Triplet 471193653 471197176 3524 3 0.0851305334846765 RFvsST 168824 689807370 689638547 no 213.343964256684 TraesCS1B01G268600 chr1B_471520571 chr1B 471520571 C G C G 3 missense_variant MODERATE transcript non_Triplet 471517051 471521773 4723 1 0.0211729832733432 RFvsST 168824 689807370 689638547 no 390.072505740119 TraesCS1B01G268900 chr1B_472635625 chr1B 472635625 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 472633967 472634893 927 1 0.107874865156419 RFvsST 168824 689807370 689638547 no 156.696262897253 TraesCS1B01G269500 chr1B_473867694 chr1B 473867694 C G C G 3 missense_variant MODERATE transcript unique_Triplet 473864420 473868360 3941 1 0.0253742704897234 RFvsST 168824 689807370 689638547 no 55.2539535083925 TraesCS1B01G269600 chr1B_474118005 chr1B 474118005 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 474118052 474120594 2543 3 0.117970900511207 RFvsST 168824 689807370 689638547 no 255.878288068957 TraesCS1B01G269600 chr1B_474119153 chr1B 474119153 G A G A 3 synonymous_variant LOW transcript unique_Triplet 474118052 474120594 2543 3 0.117970900511207 RFvsST 168824 689807370 689638547 no 255.878288068957 TraesCS1B01G269600 chr1B_474120166 chr1B 474120166 G C G C 3 missense_variant MODERATE transcript unique_Triplet 474118052 474120594 2543 3 0.117970900511207 RFvsST 168824 689807370 689638547 no 255.878288068957 TraesCS1B01G269700 chr1B_474262502 chr1B 474262502 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 474259727 474262228 2502 5 0.199840127897682 RFvsST 168824 689807370 689638547 no 113.531232863194 TraesCS1B01G269700 chr1B_474259775 chr1B 474259775 G A G A 3 synonymous_variant LOW transcript unique_Triplet 474259727 474262228 2502 5 0.199840127897682 RFvsST 168824 689807370 689638547 no 113.531232863194 TraesCS1B01G269700 chr1B_474259077 chr1B 474259077 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 474259727 474262228 2502 5 0.199840127897682 RFvsST 168824 689807370 689638547 no 113.531232863194 TraesCS1B01G269700 chr1B_474263361 chr1B 474263361 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 474259727 474262228 2502 5 0.199840127897682 RFvsST 168824 689807370 689638547 no 113.531232863194 TraesCS1B01G269700 chr1B_474260785 chr1B 474260785 T C T C 3 missense_variant MODERATE transcript unique_Triplet 474259727 474262228 2502 5 0.199840127897682 RFvsST 168824 689807370 689638547 no 113.531232863194 TraesCS1B01G269800 chr1B_474447853 chr1B 474447853 C T C T 3 synonymous_variant LOW transcript unique_Triplet 474445027 474448740 3714 3 0.0807754442649435 RFvsST 168824 689807370 689638547 no 404.228667513868 TraesCS1B01G269800 chr1B_474446721 chr1B 474446721 G A G A 3 missense_variant MODERATE transcript unique_Triplet 474445027 474448740 3714 3 0.0807754442649435 RFvsST 168824 689807370 689638547 no 404.228667513868 TraesCS1B01G269800 chr1B_474446590 chr1B 474446590 C T C T 3 synonymous_variant LOW transcript unique_Triplet 474445027 474448740 3714 3 0.0807754442649435 RFvsST 168824 689807370 689638547 no 404.228667513868 TraesCS1B01G269900 chr1B_474450932 chr1B 474450932 G A G A 3 synonymous_variant LOW transcript non_Triplet 474449815 474451729 1915 2 0.10443864229765 RFvsST 168824 689807370 689638547 no 1126.98620731309 TraesCS1B01G269900 chr1B_474451762 chr1B 474451762 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 474449815 474451729 1915 2 0.10443864229765 RFvsST 168824 689807370 689638547 no 1126.98620731309 TraesCS1B01G270600 chr1B_476019844 chr1B 476019844 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 476015431 476019786 4356 2 0.0459136822773186 RFvsST 168824 689807370 689638547 no 24.0290766398392 TraesCS1B01G270600 chr1B_476019795 chr1B 476019795 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 476015431 476019786 4356 2 0.0459136822773186 RFvsST 168824 689807370 689638547 no 24.0290766398392 TraesCS1B01G270800 chr1B_476033847 chr1B 476033847 A G A G 3 missense_variant MODERATE transcript unique_Triplet 476033099 476034908 1810 1 0.0552486187845304 RFvsST 168824 689807370 689638547 no 106.780013371246 TraesCS1B01G270900 chr1B_476078022 chr1B 476078022 T A T A 3 missense_variant MODERATE transcript unique_Triplet 476076299 476079211 2913 2 0.0686577411603158 RFvsST 168824 689807370 689638547 no 11.262931424796 TraesCS1B01G270900 chr1B_476079085 chr1B 476079085 T A T A 3 missense_variant MODERATE transcript unique_Triplet 476076299 476079211 2913 2 0.0686577411603158 RFvsST 168824 689807370 689638547 no 11.262931424796 TraesCS1B01G271000 chr1B_476342930 chr1B 476342930 A G A G 3 missense_variant MODERATE transcript non_Triplet 476333099 476347096 13998 4 0.0285755107872553 RFvsST 168824 689807370 689638547 no 64.4823714748683 TraesCS1B01G271000 chr1B_476332988 chr1B 476332988 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 476333099 476347096 13998 4 0.0285755107872553 RFvsST 168824 689807370 689638547 no 64.4823714748683 TraesCS1B01G271000 chr1B_476333088 chr1B 476333088 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 476333099 476347096 13998 4 0.0285755107872553 RFvsST 168824 689807370 689638547 no 64.4823714748683 TraesCS1B01G271000 chr1B_476342960 chr1B 476342960 G C G C 3 missense_variant MODERATE transcript non_Triplet 476333099 476347096 13998 4 0.0285755107872553 RFvsST 168824 689807370 689638547 no 64.4823714748683 TraesCS1B01G271700 chr1B_477394140 chr1B 477394140 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 477388856 477393912 5057 2 0.0395491398062092 RFvsST 168824 689807370 689638547 no 202.760027843175 TraesCS1B01G271700 chr1B_477394125 chr1B 477394125 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 477388856 477393912 5057 2 0.0395491398062092 RFvsST 168824 689807370 689638547 no 202.760027843175 TraesCS1B01G271800 chr1B_477404039 chr1B 477404039 A G A G 3 synonymous_variant LOW transcript unique_Triplet 477399768 477406029 6262 3 0.0479080166081124 RFvsST 168824 689807370 689638547 no 85.2767929092681 TraesCS1B01G271800 chr1B_477403703 chr1B 477403703 T C T C 3 synonymous_variant LOW transcript unique_Triplet 477399768 477406029 6262 3 0.0479080166081124 RFvsST 168824 689807370 689638547 no 85.2767929092681 TraesCS1B01G271800 chr1B_477403112 chr1B 477403112 T C T C 3 synonymous_variant LOW transcript unique_Triplet 477399768 477406029 6262 3 0.0479080166081124 RFvsST 168824 689807370 689638547 no 85.2767929092681 TraesCS1B01G273200 chr1B_480372419 chr1B 480372419 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 480367982 480372212 4231 5 0.118175372252423 RFvsST 168824 689807370 689638547 no 50.565247566414 TraesCS1B01G273200 chr1B_480367836 chr1B 480367836 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 480367982 480372212 4231 5 0.118175372252423 RFvsST 168824 689807370 689638547 no 50.565247566414 TraesCS1B01G273200 chr1B_480367980 chr1B 480367980 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 480367982 480372212 4231 5 0.118175372252423 RFvsST 168824 689807370 689638547 no 50.565247566414 TraesCS1B01G273200 chr1B_480372421 chr1B 480372421 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 480367982 480372212 4231 5 0.118175372252423 RFvsST 168824 689807370 689638547 no 50.565247566414 TraesCS1B01G273200 chr1B_480370857 chr1B 480370857 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 480367982 480372212 4231 5 0.118175372252423 RFvsST 168824 689807370 689638547 no 50.565247566414 TraesCS1B01G273600 chr1B_480819269 chr1B 480819269 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 480819073 480821527 2455 3 0.122199592668024 RFvsST 168824 689807370 689638547 no 1093.07092567511 TraesCS1B01G273600 chr1B_480819266 chr1B 480819266 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 480819073 480821527 2455 3 0.122199592668024 RFvsST 168824 689807370 689638547 no 1093.07092567511 TraesCS1B01G273600 chr1B_480820961 chr1B 480820961 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 480819073 480821527 2455 3 0.122199592668024 RFvsST 168824 689807370 689638547 no 1093.07092567511 TraesCS1B01G273900 chr1B_480848883 chr1B 480848883 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 480848880 480850941 2062 2 0.0969932104752667 RFvsST 168824 689807370 689638547 no 60.0746345728496 TraesCS1B01G273900 chr1B_480848849 chr1B 480848849 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 480848880 480850941 2062 2 0.0969932104752667 RFvsST 168824 689807370 689638547 no 60.0746345728496 TraesCS1B01G274300 chr1B_481542287 chr1B 481542287 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 481540913 481542400 1488 1 0.0672043010752688 RFvsST 168824 689807370 689638547 no 38.0606916810304 TraesCS1B01G274400 chr1B_481712004 chr1B 481712004 G A G A 3 missense_variant MODERATE transcript unique_Triplet 481707218 481712826 5609 1 0.0178284899269032 RFvsST 168824 689807370 689638547 no 122.157021325369 TraesCS1B01G274700 chr1B_482164075 chr1B 482164075 T C T C 3 synonymous_variant LOW transcript non_Triplet 482164043 482166147 2105 2 0.0950118764845606 RFvsST 168824 689807370 689638547 no 599.91749897768 TraesCS1B01G274700 chr1B_482164714 chr1B 482164714 C T C T 3 synonymous_variant LOW transcript non_Triplet 482164043 482166147 2105 2 0.0950118764845606 RFvsST 168824 689807370 689638547 no 599.91749897768 TraesCS1B01G274800 chr1B_482178915 chr1B 482178915 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 482178570 482189394 10825 1 0.0092378752886836 RFvsST 168824 689807370 689638547 no 136.766765929046 TraesCS1B01G275200 chr1B_482698436 chr1B 482698436 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 482695355 482698471 3117 1 0.0320821302534488 RFvsST 168824 689807370 689638547 no 331.684549633218 TraesCS1B01G275300 chr1B_482716867 chr1B 482716867 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 482704998 482712370 7373 2 0.02712600027126 RFvsST 168824 689807370 689638547 no 1.84910024566642 TraesCS1B01G275300 chr1B_482716736 chr1B 482716736 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 482704998 482712370 7373 2 0.02712600027126 RFvsST 168824 689807370 689638547 no 1.84910024566642 TraesCS1B01G275400 chr1B_482713448 chr1B 482713448 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 482713248 482715670 2423 1 0.0412711514651259 RFvsST 168824 689807370 689638547 no 66.7448768015844 TraesCS1B01G275600 chr1B_483290554 chr1B 483290554 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 483289005 483293220 4216 2 0.047438330170778 RFvsST 168824 689807370 689638547 no 403.314571446306 TraesCS1B01G275600 chr1B_483291740 chr1B 483291740 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 483289005 483293220 4216 2 0.047438330170778 RFvsST 168824 689807370 689638547 no 403.314571446306 TraesCS1B01G277300 chr1B_484889867 chr1B 484889867 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 484887585 484889356 1772 2 0.112866817155756 RFvsST 168824 689807370 689638547 no 833.778532498754 TraesCS1B01G277300 chr1B_484889412 chr1B 484889412 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 484887585 484889356 1772 2 0.112866817155756 RFvsST 168824 689807370 689638547 no 833.778532498754 TraesCS1B01G277500 chr1B_485291067 chr1B 485291067 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 485288678 485292776 4099 1 0.0243961941937058 RFvsST 168824 689807370 689638547 no 113.217069605456 TraesCS1B01G277800 chr1B_486345727 chr1B 486345727 A C A C 3 synonymous_variant LOW transcript unique_Triplet 486345401 486346818 1418 3 0.211565585331453 RFvsST 168824 689807370 689638547 no 209.589438463203 TraesCS1B01G277800 chr1B_486346692 chr1B 486346692 G A G A 3 synonymous_variant LOW transcript unique_Triplet 486345401 486346818 1418 3 0.211565585331453 RFvsST 168824 689807370 689638547 no 209.589438463203 TraesCS1B01G277800 chr1B_486346271 chr1B 486346271 A G A G 3 missense_variant MODERATE transcript unique_Triplet 486345401 486346818 1418 3 0.211565585331453 RFvsST 168824 689807370 689638547 no 209.589438463203 TraesCS1B01G278100 chr1B_486493978 chr1B 486493978 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 486488542 486490434 1893 2 0.105652403592182 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G278100 chr1B_486492014 chr1B 486492014 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 486488542 486490434 1893 2 0.105652403592182 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G278200 chr1B_486543937 chr1B 486543937 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 486544472 486546513 2042 1 0.0489715964740451 RFvsST 168824 689807370 689638547 no 99.4172675159131 TraesCS1B01G278300 chr1B_486779557 chr1B 486779557 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 486777274 486779538 2265 2 0.0883002207505519 RFvsST 168824 689807370 689638547 no 73.3405286766447 TraesCS1B01G278300 chr1B_486777430 chr1B 486777430 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 486777274 486779538 2265 2 0.0883002207505519 RFvsST 168824 689807370 689638547 no 73.3405286766447 TraesCS1B01G278600 chr1B_486975302 chr1B 486975302 G G A A 4 synonymous_variant LOW transcript unique_Triplet 486969330 486975457 6128 5 0.0815926892950392 RFvsST 168824 689807370 689638547 no 494.679356581542 TraesCS1B01G278600 chr1B_486969901 chr1B 486969901 G G A A 4 synonymous_variant LOW transcript unique_Triplet 486969330 486975457 6128 5 0.0815926892950392 RFvsST 168824 689807370 689638547 no 494.679356581542 TraesCS1B01G278600 chr1B_486969996 chr1B 486969996 T T C C 4 missense_variant MODERATE transcript unique_Triplet 486969330 486975457 6128 5 0.0815926892950392 RFvsST 168824 689807370 689638547 no 494.679356581542 TraesCS1B01G278600 chr1B_486970423 chr1B 486970423 T T C C 4 missense_variant MODERATE transcript unique_Triplet 486969330 486975457 6128 5 0.0815926892950392 RFvsST 168824 689807370 689638547 no 494.679356581542 TraesCS1B01G278600 chr1B_486971094 chr1B 486971094 C C T T 4 missense_variant MODERATE transcript unique_Triplet 486969330 486975457 6128 5 0.0815926892950392 RFvsST 168824 689807370 689638547 no 494.679356581542 TraesCS1B01G279000 chr1B_487407418 chr1B 487407418 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 487405619 487407405 1787 3 0.167879127028539 RFvsST 168824 689807370 689638547 no 94.7473522770054 TraesCS1B01G279000 chr1B_487407149 chr1B 487407149 T T C C 4 missense_variant MODERATE transcript non_Triplet 487405619 487407405 1787 3 0.167879127028539 RFvsST 168824 689807370 689638547 no 94.7473522770054 TraesCS1B01G279000 chr1B_487406760 chr1B 487406760 G G A A 4 missense_variant MODERATE transcript non_Triplet 487405619 487407405 1787 3 0.167879127028539 RFvsST 168824 689807370 689638547 no 94.7473522770054 TraesCS1B01G279200 chr1B_487496025 chr1B 487496025 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 487489192 487496862 7671 4 0.0521444400990744 RFvsST 168824 689807370 689638547 no 309.669921402262 TraesCS1B01G279200 chr1B_487496713 chr1B 487496713 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 487489192 487496862 7671 4 0.0521444400990744 RFvsST 168824 689807370 689638547 no 309.669921402262 TraesCS1B01G279200 chr1B_487496299 chr1B 487496299 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 487489192 487496862 7671 4 0.0521444400990744 RFvsST 168824 689807370 689638547 no 309.669921402262 TraesCS1B01G279200 chr1B_487489153 chr1B 487489153 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 487489192 487496862 7671 4 0.0521444400990744 RFvsST 168824 689807370 689638547 no 309.669921402262 TraesCS1B01G279600 chr1B_488209753 chr1B 488209753 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 488208308 488215309 7002 3 0.0428449014567267 RFvsST 168824 689807370 689638547 no 519.371737665567 TraesCS1B01G279600 chr1B_488208041 chr1B 488208041 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 488208308 488215309 7002 3 0.0428449014567267 RFvsST 168824 689807370 689638547 no 519.371737665567 TraesCS1B01G279600 chr1B_488208121 chr1B 488208121 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 488208308 488215309 7002 3 0.0428449014567267 RFvsST 168824 689807370 689638547 no 519.371737665567 TraesCS1B01G280100 chr1B_488482424 chr1B 488482424 C C T T 4 missense_variant MODERATE transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488474125 chr1B 488474125 T T C C 4 synonymous_variant LOW transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488482696 chr1B 488482696 C C T T 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488473753 chr1B 488473753 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488475186 chr1B 488475186 C T C T 3 missense_variant MODERATE transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488475063 chr1B 488475063 C C T T 4 missense_variant MODERATE transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280100 chr1B_488482440 chr1B 488482440 C C A A 4 missense_variant MODERATE transcript non_Triplet 488473743 488482783 9041 7 0.0774250635991594 RFvsST 168824 689807370 689638547 no 354.695039083939 TraesCS1B01G280500 chr1B_488819446 chr1B 488819446 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 488817764 488820151 2388 2 0.0837520938023451 RFvsST 168824 689807370 689638547 no 80.9002364509931 TraesCS1B01G280500 chr1B_488819931 chr1B 488819931 A A C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 488817764 488820151 2388 2 0.0837520938023451 RFvsST 168824 689807370 689638547 no 80.9002364509931 TraesCS1B01G280600 chr1B_488823254 chr1B 488823254 C T C T 3 missense_variant MODERATE transcript unique_Triplet 488820484 488824416 3933 1 0.0254258835494533 RFvsST 168824 689807370 689638547 no 57.6619081999789 TraesCS1B01G280700 chr1B_489131906 chr1B 489131906 T T C C 4 synonymous_variant LOW transcript unique_Triplet 489131321 489133981 2661 4 0.150319428786171 RFvsST 168824 689807370 689638547 no 481.780870584233 TraesCS1B01G280700 chr1B_489134006 chr1B 489134006 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 489131321 489133981 2661 4 0.150319428786171 RFvsST 168824 689807370 689638547 no 481.780870584233 TraesCS1B01G280700 chr1B_489131509 chr1B 489131509 G G A A 4 missense_variant MODERATE transcript unique_Triplet 489131321 489133981 2661 4 0.150319428786171 RFvsST 168824 689807370 689638547 no 481.780870584233 TraesCS1B01G280700 chr1B_489132226 chr1B 489132226 T T C C 4 missense_variant MODERATE transcript unique_Triplet 489131321 489133981 2661 4 0.150319428786171 RFvsST 168824 689807370 689638547 no 481.780870584233 TraesCS1B01G280800 chr1B_489200098 chr1B 489200098 C C G G 4 missense_variant MODERATE transcript unique_Triplet 489198661 489200649 1989 1 0.0502765208647562 RFvsST 168824 689807370 689638547 no 28.0073006331686 TraesCS1B01G280900 chr1B_489207378 chr1B 489207378 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 489201490 489207469 5980 4 0.0668896321070234 RFvsST 168824 689807370 689638547 no 167.269186806106 TraesCS1B01G280900 chr1B_489201598 chr1B 489201598 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 489201490 489207469 5980 4 0.0668896321070234 RFvsST 168824 689807370 689638547 no 167.269186806106 TraesCS1B01G280900 chr1B_489206147 chr1B 489206147 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 489201490 489207469 5980 4 0.0668896321070234 RFvsST 168824 689807370 689638547 no 167.269186806106 TraesCS1B01G280900 chr1B_489201943 chr1B 489201943 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 489201490 489207469 5980 4 0.0668896321070234 RFvsST 168824 689807370 689638547 no 167.269186806106 TraesCS1B01G281600 chr1B_489994213 chr1B 489994213 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 489993230 489994186 957 2 0.208986415882968 RFvsST 168824 689807370 689638547 no 120.536973397631 TraesCS1B01G281600 chr1B_489993559 chr1B 489993559 C C A A 4 synonymous_variant LOW transcript non_Triplet 489993230 489994186 957 2 0.208986415882968 RFvsST 168824 689807370 689638547 no 120.536973397631 TraesCS1B01G282200 chr1B_491084086 chr1B 491084086 C T C T 3 synonymous_variant LOW transcript unique_Triplet 491081836 491087160 5325 1 0.0187793427230047 RFvsST 168824 689807370 689638547 no 127.245280431659 TraesCS1B01G286500 chr1B_498632356 chr1B 498632356 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 498631341 498632365 1025 1 0.0975609756097561 RFvsST 168824 689807370 689638547 no 133.665539612052 TraesCS1B01G298300 chr1B_518810342 chr1B 518810342 C C T T 4 synonymous_variant LOW transcript unique_Triplet 518806599 518810357 3759 2 0.0532056397978186 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G298300 chr1B_518810372 chr1B 518810372 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 518806599 518810357 3759 2 0.0532056397978186 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G299000 chr1B_520366056 chr1B 520366056 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 520361103 520362626 1524 1 0.0656167979002625 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G299100 chr1B_520368479 chr1B 520368479 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 520366251 520366445 195 1 0.512820512820513 RFvsST 168824 689807370 689638547 no 135.650425241981 TraesCS1B01G299300 chr1B_520374590 chr1B 520374590 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 520374149 520374475 327 1 0.305810397553517 RFvsST 168824 689807370 689638547 no 739.508451384321 TraesCS1B01G299600 chr1B_520468949 chr1B 520468949 A G A G 3 missense_variant MODERATE transcript non_Triplet 520468861 520470785 1925 1 0.051948051948052 RFvsST 168824 689807370 689638547 no 38.0634014158004 TraesCS1B01G299800 chr1B_520522472 chr1B 520522472 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 520522072 520529820 7749 2 0.0258097819073429 RFvsST 168824 689807370 689638547 no 66.3867697756588 TraesCS1B01G299800 chr1B_520527951 chr1B 520527951 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 520522072 520529820 7749 2 0.0258097819073429 RFvsST 168824 689807370 689638547 no 66.3867697756588 TraesCS1B01G300100 chr1B_520815163 chr1B 520815163 G T G T 3 missense_variant MODERATE transcript unique_Triplet 520812854 520815642 2789 2 0.0717102904266762 RFvsST 168824 689807370 689638547 no 185.262199034998 TraesCS1B01G300100 chr1B_520815045 chr1B 520815045 G G A A 4 synonymous_variant LOW transcript unique_Triplet 520812854 520815642 2789 2 0.0717102904266762 RFvsST 168824 689807370 689638547 no 185.262199034998 TraesCS1B01G300600 chr1B_520999113 chr1B 520999113 C C T T 4 synonymous_variant LOW transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_521001297 chr1B 521001297 G G C C 4 synonymous_variant LOW transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_520999116 chr1B 520999116 C C G G 4 missense_variant MODERATE transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_521001784 chr1B 521001784 C C G G 4 synonymous_variant LOW transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_521002105 chr1B 521002105 A A C C 4 missense_variant MODERATE transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_520999685 chr1B 520999685 T T C C 4 synonymous_variant LOW transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300600 chr1B_521001994 chr1B 521001994 C C G G 4 synonymous_variant LOW transcript unique_Triplet 520999089 521002191 3103 7 0.225588140509185 RFvsST 168824 689807370 689638547 no 108.068899497537 TraesCS1B01G300700 chr1B_521218985 chr1B 521218985 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 521218991 521225287 6297 2 0.0317611561060823 RFvsST 168824 689807370 689638547 no 95.8844179264983 TraesCS1B01G300700 chr1B_521225061 chr1B 521225061 G G A A 4 missense_variant MODERATE transcript unique_Triplet 521218991 521225287 6297 2 0.0317611561060823 RFvsST 168824 689807370 689638547 no 95.8844179264983 TraesCS1B01G301500 chr1B_522012936 chr1B 522012936 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 522010451 522015841 5391 1 0.0185494342422556 RFvsST 168824 689807370 689638547 no 354.432313899148 TraesCS1B01G301700 chr1B_522357296 chr1B 522357296 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 522356657 522362085 5429 1 0.0184195984527537 RFvsST 168824 689807370 689638547 no 125.377885754493 TraesCS1B01G301800 chr1B_522362117 chr1B 522362117 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 522362806 522365901 3096 1 0.0322997416020672 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G316400 chr1B_540993842 chr1B 540993842 A A G G 4 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 540991170 540994048 2879 1 0.0347342827370615 RFvsST 168824 689807370 689638547 no 6.41702818169366 TraesCS1B01G319100 chr1B_543476456 chr1B 543476456 G A G A 3 synonymous_variant LOW transcript unique_Triplet 543474047 543477037 2991 3 0.100300902708124 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G319100 chr1B_543473932 chr1B 543473932 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 543474047 543477037 2991 3 0.100300902708124 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G319100 chr1B_543476316 chr1B 543476316 G A G A 3 synonymous_variant LOW transcript unique_Triplet 543474047 543477037 2991 3 0.100300902708124 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G319200 chr1B_543480538 chr1B 543480538 A G A G 3 missense_variant MODERATE transcript unique_Triplet 543479715 543480821 1107 1 0.0903342366757001 RFvsST 168824 689807370 689638547 no 282.61816975065 TraesCS1B01G319800 chr1B_543843930 chr1B 543843930 G G C C 4 missense_variant MODERATE transcript non_Triplet 543843642 543844013 372 1 0.268817204301075 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G323600 chr1B_548540885 chr1B 548540885 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 548540126 548541972 1847 1 0.0541418516513265 RFvsST 168824 689807370 689638547 no 120.903214430216 TraesCS1B01G325000 chr1B_551013055 chr1B 551013055 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 551008301 551010254 1954 1 0.0511770726714432 RFvsST 168824 689807370 689638547 no 40.6102018114908 TraesCS1B01G326600 chr1B_552474000 chr1B 552474000 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 552473651 552474373 723 1 0.138312586445367 RFvsST 168824 689807370 689638547 no 73.1311360182209 TraesCS1B01G326700 chr1B_553017501 chr1B 553017501 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 553017549 553021065 3517 1 0.0284333238555587 RFvsST 168824 689807370 689638547 no 74.8078554674537 TraesCS1B01G327300 chr1B_553556680 chr1B 553556680 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 553553908 553558333 4426 1 0.0225937641211026 RFvsST 168824 689807370 689638547 no 58.0634498101102 TraesCS1B01G327500 chr1B_553633733 chr1B 553633733 C A C A 3 missense_variant MODERATE transcript unique_Triplet 553631857 553636822 4966 1 0.0201369311316955 RFvsST 168824 689807370 689638547 no 167.206856024283 TraesCS1B01G337400 chr1B_564907595 chr1B 564907595 A A C C 4 synonymous_variant LOW transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564907548 chr1B 564907548 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564909151 chr1B 564909151 C C T T 4 synonymous_variant LOW transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564907611 chr1B 564907611 G G A A 4 missense_variant MODERATE transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564908616 chr1B 564908616 T T C C 4 synonymous_variant LOW transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564908655 chr1B 564908655 G G A A 4 synonymous_variant LOW transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337400 chr1B_564909233 chr1B 564909233 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 564907563 564909190 1628 7 0.42997542997543 RFvsST 168824 689807370 689638547 no 241.381284131656 TraesCS1B01G337600 chr1B_565335680 chr1B 565335680 G G A A 4 missense_variant MODERATE transcript non_Triplet 565334375 565337238 2864 1 0.0349162011173184 RFvsST 168824 689807370 689638547 no 137.334579440495 TraesCS1B01G337800 chr1B_565664346 chr1B 565664346 A A C C 4 missense_variant MODERATE transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565670293 chr1B 565670293 C C T T 4 synonymous_variant LOW transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565670125 chr1B 565670125 G G A A 4 synonymous_variant LOW transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565665048 chr1B 565665048 C C T T 4 synonymous_variant LOW transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565669914 chr1B 565669914 T T C C 4 missense_variant MODERATE transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565672749 chr1B 565672749 C C T T 4 synonymous_variant LOW transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G337800 chr1B_565672341 chr1B 565672341 C C G G 4 synonymous_variant LOW transcript unique_Triplet 565660131 565672842 12712 7 0.0550660792951542 RFvsST 168824 689807370 689638547 no 936.731185708466 TraesCS1B01G338500 chr1B_566603733 chr1B 566603733 G A G A 3 missense_variant MODERATE transcript unique_Triplet 566601377 566604244 2868 1 0.0348675034867503 RFvsST 168824 689807370 689638547 no 243.767948004766 TraesCS1B01G338600 chr1B_566608346 chr1B 566608346 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 566605390 566608469 3080 1 0.0324675324675325 RFvsST 168824 689807370 689638547 no 629.428148339487 TraesCS1B01G338700 chr1B_566608947 chr1B 566608947 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 566610765 566611052 288 1 0.347222222222222 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G339000 chr1B_566831658 chr1B 566831658 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 566823535 566831413 7879 2 0.0253839319710623 RFvsST 168824 689807370 689638547 no 1251.20329330035 TraesCS1B01G339000 chr1B_566823488 chr1B 566823488 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 566823535 566831413 7879 2 0.0253839319710623 RFvsST 168824 689807370 689638547 no 1251.20329330035 TraesCS1B01G339100 chr1B_566832991 chr1B 566832991 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 566832205 566836047 3843 2 0.0520426749934947 RFvsST 168824 689807370 689638547 no 78.2360472092669 TraesCS1B01G339100 chr1B_566833867 chr1B 566833867 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 566832205 566836047 3843 2 0.0520426749934947 RFvsST 168824 689807370 689638547 no 78.2360472092669 TraesCS1B01G339200 chr1B_566837921 chr1B 566837921 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838895 chr1B 566838895 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566842466 chr1B 566842466 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566837849 chr1B 566837849 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566839272 chr1B 566839272 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566840473 chr1B 566840473 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838550 chr1B 566838550 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838457 chr1B 566838457 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566847779 chr1B 566847779 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566844352 chr1B 566844352 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566837185 chr1B 566837185 C G C G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566837266 chr1B 566837266 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838346 chr1B 566838346 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838861 chr1B 566838861 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566837251 chr1B 566837251 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339200 chr1B_566838725 chr1B 566838725 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 566837058 566849047 11990 16 0.133444537114262 RFvsST 168824 689807370 689638547 no 1015.11159569646 TraesCS1B01G339500 chr1B_566981029 chr1B 566981029 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 566981080 566981563 484 1 0.206611570247934 RFvsST 168824 689807370 689638547 no 692.238819926237 TraesCS1B01G340300 chr1B_568522799 chr1B 568522799 G A G A 3 missense_variant MODERATE transcript unique_Triplet 568521869 568525244 3376 3 0.0888625592417062 RFvsST 168824 689807370 689638547 no 41.1511777288533 TraesCS1B01G340300 chr1B_568521957 chr1B 568521957 T C T C 3 missense_variant MODERATE transcript unique_Triplet 568521869 568525244 3376 3 0.0888625592417062 RFvsST 168824 689807370 689638547 no 41.1511777288533 TraesCS1B01G340300 chr1B_568522084 chr1B 568522084 A G A G 3 synonymous_variant LOW transcript unique_Triplet 568521869 568525244 3376 3 0.0888625592417062 RFvsST 168824 689807370 689638547 no 41.1511777288533 TraesCS1B01G340400 chr1B_568525317 chr1B 568525317 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 568526830 568532870 6041 1 0.016553550736633 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G340600 chr1B_568572077 chr1B 568572077 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 568568584 568572011 3428 1 0.029171528588098 RFvsST 168824 689807370 689638547 no 335.22903773901 TraesCS1B01G341100 chr1B_568968795 chr1B 568968795 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 568968245 568972730 4486 2 0.0445831475702185 RFvsST 168824 689807370 689638547 no 203.509743427999 TraesCS1B01G341100 chr1B_568968300 chr1B 568968300 G T G T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 568968245 568972730 4486 2 0.0445831475702185 RFvsST 168824 689807370 689638547 no 203.509743427999 TraesCS1B01G342200 chr1B_570295843 chr1B 570295843 T C T C 3 synonymous_variant LOW transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570295547 chr1B 570295547 C A C A 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570293194 chr1B 570293194 C T C T 3 missense_variant MODERATE transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570294526 chr1B 570294526 C T C T 3 synonymous_variant LOW transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570292306 chr1B 570292306 A G A G 3 synonymous_variant LOW transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570301846 chr1B 570301846 A G A G 3 synonymous_variant LOW transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570295641 chr1B 570295641 G A G A 3 synonymous_variant LOW transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342200 chr1B_570303477 chr1B 570303477 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 570291976 570303561 11586 8 0.0690488520628345 RFvsST 168824 689807370 689638547 no 156.232626398879 TraesCS1B01G342600 chr1B_571060292 chr1B 571060292 C T C T 3 missense_variant MODERATE transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571056933 chr1B 571056933 C T C T 3 synonymous_variant LOW transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571060426 chr1B 571060426 G A G A 3 missense_variant MODERATE transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571060544 chr1B 571060544 C T C T 3 missense_variant MODERATE transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571060083 chr1B 571060083 C T C T 3 synonymous_variant LOW transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571061468 chr1B 571061468 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G342600 chr1B_571060373 chr1B 571060373 C T C T 3 missense_variant MODERATE transcript unique_Triplet 571056412 571062136 5725 7 0.122270742358079 RFvsST 168824 689807370 689638547 no 219.977290776332 TraesCS1B01G343900 chr1B_572297681 chr1B 572297681 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572298148 chr1B 572298148 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572297017 chr1B 572297017 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572299087 chr1B 572299087 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572298731 chr1B 572298731 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572297927 chr1B 572297927 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G343900 chr1B_572302675 chr1B 572302675 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 572296729 572302704 5976 7 0.117135207496653 RFvsST 168824 689807370 689638547 no 378.706956384085 TraesCS1B01G344100 chr1B_572532751 chr1B 572532751 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 572524114 572532553 8440 1 0.0118483412322275 RFvsST 168824 689807370 689638547 no 129.578210003259 TraesCS1B01G351900 chr1B_582906702 chr1B 582906702 T T C C 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 582904891 582907578 2688 1 0.037202380952381 RFvsST 168824 689807370 689638547 no 858.375189728389 TraesCS1B01G354300 chr1B_584139413 chr1B 584139413 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 584139376 584141653 2278 1 0.0438981562774363 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G354400 chr1B_584148672 chr1B 584148672 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 584145528 584156223 10696 2 0.018698578908003 RFvsST 168824 689807370 689638547 no 59.5831847692296 TraesCS1B01G354400 chr1B_584147579 chr1B 584147579 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 584145528 584156223 10696 2 0.018698578908003 RFvsST 168824 689807370 689638547 no 59.5831847692296 TraesCS1B01G356900 chr1B_586292467 chr1B 586292467 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 586289457 586296313 6857 3 0.0437509114773224 RFvsST 168824 689807370 689638547 no 103.277636234431 TraesCS1B01G356900 chr1B_586296112 chr1B 586296112 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 586289457 586296313 6857 3 0.0437509114773224 RFvsST 168824 689807370 689638547 no 103.277636234431 TraesCS1B01G356900 chr1B_586289417 chr1B 586289417 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 586289457 586296313 6857 3 0.0437509114773224 RFvsST 168824 689807370 689638547 no 103.277636234431 TraesCS1B01G357000 chr1B_586301582 chr1B 586301582 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586301558 chr1B 586301558 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586302733 chr1B 586302733 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586301596 chr1B 586301596 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586299065 chr1B 586299065 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586301887 chr1B 586301887 T C T C 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586299565 chr1B 586299565 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586302176 chr1B 586302176 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586302721 chr1B 586302721 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586300960 chr1B 586300960 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586302134 chr1B 586302134 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586299496 chr1B 586299496 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586302038 chr1B 586302038 T C T C 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586300692 chr1B 586300692 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G357000 chr1B_586300450 chr1B 586300450 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 586297844 586303030 5187 15 0.289184499710816 RFvsST 168824 689807370 689638547 no 203.365827009655 TraesCS1B01G360800 chr1B_589134539 chr1B 589134539 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 589134019 589135566 1548 1 0.0645994832041344 RFvsST 168824 689807370 689638547 no 213.499383316121 TraesCS1B01G380300 chr1B_613236084 chr1B 613236084 G G A A 4 synonymous_variant LOW transcript non_Triplet 613233167 613236733 3567 2 0.0560695262125035 RFvsST 168824 689807370 689638547 no 66.1970552880761 TraesCS1B01G380300 chr1B_613236702 chr1B 613236702 T T C C 4 missense_variant MODERATE transcript non_Triplet 613233167 613236733 3567 2 0.0560695262125035 RFvsST 168824 689807370 689638547 no 66.1970552880761 TraesCS1B01G380500 chr1B_613324675 chr1B 613324675 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 613321143 613324532 3390 3 0.0884955752212389 RFvsST 168824 689807370 689638547 no 86.5383660433784 TraesCS1B01G380500 chr1B_613324736 chr1B 613324736 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 613321143 613324532 3390 3 0.0884955752212389 RFvsST 168824 689807370 689638547 no 86.5383660433784 TraesCS1B01G380500 chr1B_613323162 chr1B 613323162 T T C C 4 missense_variant MODERATE transcript unique_Triplet 613321143 613324532 3390 3 0.0884955752212389 RFvsST 168824 689807370 689638547 no 86.5383660433784 TraesCS1B01G381000 chr1B_613422409 chr1B 613422409 G G A A 4 synonymous_variant LOW transcript unique_Triplet 613421944 613425057 3114 3 0.0963391136801541 RFvsST 168824 689807370 689638547 no 110.961456996938 TraesCS1B01G381000 chr1B_613422223 chr1B 613422223 G G A A 4 synonymous_variant LOW transcript unique_Triplet 613421944 613425057 3114 3 0.0963391136801541 RFvsST 168824 689807370 689638547 no 110.961456996938 TraesCS1B01G381000 chr1B_613423115 chr1B 613423115 G G A A 4 synonymous_variant LOW transcript unique_Triplet 613421944 613425057 3114 3 0.0963391136801541 RFvsST 168824 689807370 689638547 no 110.961456996938 TraesCS1B01G381900 chr1B_614448886 chr1B 614448886 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 614444221 614448016 3796 1 0.0263435194942044 RFvsST 168824 689807370 689638547 no 121.991647161047 TraesCS1B01G382100 chr1B_614457202 chr1B 614457202 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 614456928 614457257 330 1 0.303030303030303 RFvsST 168824 689807370 689638547 no 36.2036745804363 TraesCS1B01G387600 chr1B_621954525 chr1B 621954525 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 621952186 621953571 1386 1 0.0721500721500721 RFvsST 168824 689807370 689638547 no 30.8579519292061 TraesCS1B01G387700 chr1B_621956957 chr1B 621956957 C T C T 3 synonymous_variant LOW transcript unique_Triplet 621954551 621956992 2442 1 0.040950040950041 RFvsST 168824 689807370 689638547 no 12.8922355111403 TraesCS1B01G388700 chr1B_622469391 chr1B 622469391 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 622466447 622471426 4980 5 0.100401606425703 RFvsST 168824 689807370 689638547 no 9137.01052926315 TraesCS1B01G388700 chr1B_622467480 chr1B 622467480 G A G A 3 intron_variant MODIFIER transcript nonUnique_Triplet 622466447 622471426 4980 5 0.100401606425703 RFvsST 168824 689807370 689638547 no 9137.01052926315 TraesCS1B01G388700 chr1B_622467070 chr1B 622467070 G T G T 3 splice_region_variant&intron_variant LOW transcript nonUnique_Triplet 622466447 622471426 4980 5 0.100401606425703 RFvsST 168824 689807370 689638547 no 9137.01052926315 TraesCS1B01G388700 chr1B_622469634 chr1B 622469634 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 622466447 622471426 4980 5 0.100401606425703 RFvsST 168824 689807370 689638547 no 9137.01052926315 TraesCS1B01G388700 chr1B_622467121 chr1B 622467121 C T C T 3 intron_variant MODIFIER transcript nonUnique_Triplet 622466447 622471426 4980 5 0.100401606425703 RFvsST 168824 689807370 689638547 no 9137.01052926315 TraesCS1B01G388800 chr1B_622481075 chr1B 622481075 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 622475750 622482806 7057 3 0.0425109820036843 RFvsST 168824 689807370 689638547 no 224.887067222367 TraesCS1B01G388800 chr1B_622478190 chr1B 622478190 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 622475750 622482806 7057 3 0.0425109820036843 RFvsST 168824 689807370 689638547 no 224.887067222367 TraesCS1B01G388800 chr1B_622482194 chr1B 622482194 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 622475750 622482806 7057 3 0.0425109820036843 RFvsST 168824 689807370 689638547 no 224.887067222367 TraesCS1B01G390000 chr1B_623722735 chr1B 623722735 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 623727410 623731515 4106 1 0.0243546030199708 RFvsST 168824 689807370 689638547 no 198.408115666251 TraesCS1B01G396100 chr1B_627946683 chr1B 627946683 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 627943550 627943942 393 1 0.254452926208651 RFvsST 168824 689807370 689638547 no 21.7663558072011 TraesCS1B01G396300 chr1B_628003253 chr1B 628003253 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 628003380 628006402 3023 4 0.132318888521336 RFvsST 168824 689807370 689638547 no 39.002095687561 TraesCS1B01G396300 chr1B_628006420 chr1B 628006420 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 628003380 628006402 3023 4 0.132318888521336 RFvsST 168824 689807370 689638547 no 39.002095687561 TraesCS1B01G396300 chr1B_628006247 chr1B 628006247 C T C T 3 synonymous_variant LOW transcript unique_Triplet 628003380 628006402 3023 4 0.132318888521336 RFvsST 168824 689807370 689638547 no 39.002095687561 TraesCS1B01G396300 chr1B_628006273 chr1B 628006273 C T C T 3 synonymous_variant LOW transcript unique_Triplet 628003380 628006402 3023 4 0.132318888521336 RFvsST 168824 689807370 689638547 no 39.002095687561 TraesCS1B01G396500 chr1B_628050059 chr1B 628050059 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 628046242 628046997 756 1 0.132275132275132 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G396600 chr1B_628053852 chr1B 628053852 C G C G 3 synonymous_variant LOW transcript unique_Triplet 628050255 628054197 3943 1 0.0253613999492772 RFvsST 168824 689807370 689638547 no 146.548323199692 TraesCS1B01G396800 chr1B_628514633 chr1B 628514633 T C T C 3 stop_lost&splice_region_variant HIGH transcript unique_Triplet 628514150 628518736 4587 4 0.0872029649008066 RFvsST 168824 689807370 689638547 no 358.175845769807 TraesCS1B01G396800 chr1B_628514341 chr1B 628514341 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 628514150 628518736 4587 4 0.0872029649008066 RFvsST 168824 689807370 689638547 no 358.175845769807 TraesCS1B01G396800 chr1B_628514432 chr1B 628514432 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 628514150 628518736 4587 4 0.0872029649008066 RFvsST 168824 689807370 689638547 no 358.175845769807 TraesCS1B01G396800 chr1B_628518206 chr1B 628518206 G A G A 3 synonymous_variant LOW transcript unique_Triplet 628514150 628518736 4587 4 0.0872029649008066 RFvsST 168824 689807370 689638547 no 358.175845769807 TraesCS1B01G441000 chr1B_662068473 chr1B 662068473 G A G A 3 missense_variant MODERATE transcript non_Triplet 662067868 662069696 1829 1 0.0546746856205577 RFvsST 168824 689807370 689638547 no 320.86559732201 TraesCS1B01G441700 chr1B_662556490 chr1B 662556490 C T C T 3 missense_variant MODERATE transcript unique_Triplet 662556116 662558837 2722 3 0.110213078618663 RFvsST 168824 689807370 689638547 no 77.3757597451445 TraesCS1B01G441700 chr1B_662557988 chr1B 662557988 T C T C 3 synonymous_variant LOW transcript unique_Triplet 662556116 662558837 2722 3 0.110213078618663 RFvsST 168824 689807370 689638547 no 77.3757597451445 TraesCS1B01G441700 chr1B_662556308 chr1B 662556308 C T C T 3 synonymous_variant LOW transcript unique_Triplet 662556116 662558837 2722 3 0.110213078618663 RFvsST 168824 689807370 689638547 no 77.3757597451445 TraesCS1B01G441900 chr1B_662667377 chr1B 662667377 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 662665472 662671571 6100 5 0.0819672131147541 RFvsST 168824 689807370 689638547 no 158.289801317747 TraesCS1B01G441900 chr1B_662669034 chr1B 662669034 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 662665472 662671571 6100 5 0.0819672131147541 RFvsST 168824 689807370 689638547 no 158.289801317747 TraesCS1B01G441900 chr1B_662668384 chr1B 662668384 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 662665472 662671571 6100 5 0.0819672131147541 RFvsST 168824 689807370 689638547 no 158.289801317747 TraesCS1B01G441900 chr1B_662666584 chr1B 662666584 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 662665472 662671571 6100 5 0.0819672131147541 RFvsST 168824 689807370 689638547 no 158.289801317747 TraesCS1B01G441900 chr1B_662666060 chr1B 662666060 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 662665472 662671571 6100 5 0.0819672131147541 RFvsST 168824 689807370 689638547 no 158.289801317747 TraesCS1B01G443100 chr1B_664287876 chr1B 664287876 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 664285427 664287580 2154 2 0.0928505106778087 RFvsST 168824 689807370 689638547 no 476.263003591003 TraesCS1B01G443100 chr1B_664285845 chr1B 664285845 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 664285427 664287580 2154 2 0.0928505106778087 RFvsST 168824 689807370 689638547 no 476.263003591003 TraesCS1B01G443200 chr1B_664302506 chr1B 664302506 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 664297294 664302406 5113 1 0.0195579894386857 RFvsST 168824 689807370 689638547 no 1029.94814585755 TraesCS1B01G443700 chr1B_664804204 chr1B 664804204 A G A G 3 missense_variant MODERATE transcript unique_Triplet 664799886 664805926 6041 3 0.049660652209899 RFvsST 168824 689807370 689638547 no 54.8344839974921 TraesCS1B01G443700 chr1B_664804044 chr1B 664804044 T C T C 3 synonymous_variant LOW transcript unique_Triplet 664799886 664805926 6041 3 0.049660652209899 RFvsST 168824 689807370 689638547 no 54.8344839974921 TraesCS1B01G443700 chr1B_664803891 chr1B 664803891 C A C A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 664799886 664805926 6041 3 0.049660652209899 RFvsST 168824 689807370 689638547 no 54.8344839974921 TraesCS1B01G443900 chr1B_664954261 chr1B 664954261 T C T C 3 synonymous_variant LOW transcript unique_Triplet 664952538 664955592 3055 2 0.0654664484451719 RFvsST 168824 689807370 689638547 no 142.668547728699 TraesCS1B01G443900 chr1B_664955588 chr1B 664955588 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 664952538 664955592 3055 2 0.0654664484451719 RFvsST 168824 689807370 689638547 no 142.668547728699 TraesCS1B01G444000 chr1B_664976808 chr1B 664976808 A G A G 3 synonymous_variant LOW transcript unique_Triplet 664976370 664976831 462 2 0.432900432900433 RFvsST 168824 689807370 689638547 no 41.0967486205866 TraesCS1B01G444000 chr1B_664976971 chr1B 664976971 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 664976370 664976831 462 2 0.432900432900433 RFvsST 168824 689807370 689638547 no 41.0967486205866 TraesCS1B01G445200 chr1B_665314530 chr1B 665314530 G C G C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 665310091 665314383 4293 3 0.0698812019566736 RFvsST 168824 689807370 689638547 no 12466.073730219 TraesCS1B01G445200 chr1B_665314529 chr1B 665314529 C A C A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 665310091 665314383 4293 3 0.0698812019566736 RFvsST 168824 689807370 689638547 no 12466.073730219 TraesCS1B01G445200 chr1B_665309885 chr1B 665309885 A C A C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 665310091 665314383 4293 3 0.0698812019566736 RFvsST 168824 689807370 689638547 no 12466.073730219 TraesCS1B01G445600 chr1B_665454779 chr1B 665454779 C T C T 3 missense_variant MODERATE transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G445600 chr1B_665454789 chr1B 665454789 T C T C 3 synonymous_variant LOW transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G445600 chr1B_665453258 chr1B 665453258 T C T C 3 synonymous_variant LOW transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G445600 chr1B_665452876 chr1B 665452876 T C T C 3 missense_variant MODERATE transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G445600 chr1B_665453048 chr1B 665453048 G A G A 3 synonymous_variant LOW transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G445600 chr1B_665454945 chr1B 665454945 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 665452634 665454935 2302 6 0.260642919200695 RFvsST 168824 689807370 689638547 no 352.577387162549 TraesCS1B01G447500 chr1B_667214342 chr1B 667214342 T C T C 3 synonymous_variant LOW transcript unique_Triplet 667213574 667218273 4700 1 0.0212765957446809 RFvsST 168824 689807370 689638547 no 65.521801888344 TraesCS1B01G447600 chr1B_667226828 chr1B 667226828 T C T C 3 synonymous_variant LOW transcript unique_Triplet 667224751 667229526 4776 2 0.0418760469011725 RFvsST 168824 689807370 689638547 no 186.716324176444 TraesCS1B01G447600 chr1B_667229049 chr1B 667229049 A G A G 3 synonymous_variant LOW transcript unique_Triplet 667224751 667229526 4776 2 0.0418760469011725 RFvsST 168824 689807370 689638547 no 186.716324176444 TraesCS1B01G448300 chr1B_667681973 chr1B 667681973 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 667677935 667682146 4212 4 0.0949667616334283 RFvsST 168824 689807370 689638547 no 74.022506768854 TraesCS1B01G448300 chr1B_667677860 chr1B 667677860 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 667677935 667682146 4212 4 0.0949667616334283 RFvsST 168824 689807370 689638547 no 74.022506768854 TraesCS1B01G448300 chr1B_667677853 chr1B 667677853 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 667677935 667682146 4212 4 0.0949667616334283 RFvsST 168824 689807370 689638547 no 74.022506768854 TraesCS1B01G448300 chr1B_667677861 chr1B 667677861 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 667677935 667682146 4212 4 0.0949667616334283 RFvsST 168824 689807370 689638547 no 74.022506768854 TraesCS1B01G448400 chr1B_667716873 chr1B 667716873 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 667716006 667716995 990 1 0.101010101010101 RFvsST 168824 689807370 689638547 no 31.8048458428635 TraesCS1B01G449100 chr1B_667931564 chr1B 667931564 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 667930932 667931301 370 1 0.27027027027027 RFvsST 168824 689807370 689638547 no 418.99220266679 TraesCS1B01G449200 chr1B_667965691 chr1B 667965691 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 667965704 667966088 385 1 0.25974025974026 RFvsST 168824 689807370 689638547 no 734.508860115385 TraesCS1B01G449600 chr1B_668122408 chr1B 668122408 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449600 chr1B_668123435 chr1B 668123435 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449600 chr1B_668124748 chr1B 668124748 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449600 chr1B_668123517 chr1B 668123517 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449600 chr1B_668123391 chr1B 668123391 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449600 chr1B_668126480 chr1B 668126480 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 668118006 668126459 8454 6 0.07097232079489 RFvsST 168824 689807370 689638547 no 343.792069134205 TraesCS1B01G449700 chr1B_668131420 chr1B 668131420 G G A A 4 synonymous_variant LOW transcript unique_Triplet 668129122 668132472 3351 1 0.0298418382572366 RFvsST 168824 689807370 689638547 no 7.35972137380593 TraesCS1B01G450100 chr1B_668200656 chr1B 668200656 A A C C 4 missense_variant MODERATE transcript non_Triplet 668199849 668201062 1214 1 0.0823723228995058 RFvsST 168824 689807370 689638547 no 67.1850302084502 TraesCS1B01G450300 chr1B_668473755 chr1B 668473755 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668471115 chr1B 668471115 C C T T 4 intron_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668469054 chr1B 668469054 A A G G 4 missense_variant MODERATE transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668468896 chr1B 668468896 C C T T 4 synonymous_variant LOW transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668470136 chr1B 668470136 C C A A 4 intron_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668472233 chr1B 668472233 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668471060 chr1B 668471060 C C T T 4 intron_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450300 chr1B_668472747 chr1B 668472747 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 668468337 668472200 3864 8 0.20703933747412 RFvsST 168824 689807370 689638547 no 194.080893014926 TraesCS1B01G450700 chr1B_668760194 chr1B 668760194 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762694 chr1B 668762694 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762924 chr1B 668762924 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762966 chr1B 668762966 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668760032 chr1B 668760032 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762903 chr1B 668762903 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668759651 chr1B 668759651 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668763035 chr1B 668763035 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762563 chr1B 668762563 T G T G 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G450700 chr1B_668762551 chr1B 668762551 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 668756926 668763146 6221 10 0.160745860794085 RFvsST 168824 689807370 689638547 no 268.040048909816 TraesCS1B01G451500 chr1B_668939750 chr1B 668939750 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 668936376 668938364 1989 3 0.150829562594268 RFvsST 168824 689807370 689638547 no 291.739754572284 TraesCS1B01G451500 chr1B_668937619 chr1B 668937619 A A C C 4 missense_variant MODERATE transcript unique_Triplet 668936376 668938364 1989 3 0.150829562594268 RFvsST 168824 689807370 689638547 no 291.739754572284 TraesCS1B01G451500 chr1B_668939708 chr1B 668939708 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 668936376 668938364 1989 3 0.150829562594268 RFvsST 168824 689807370 689638547 no 291.739754572284 TraesCS1B01G451700 chr1B_668966383 chr1B 668966383 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 668966419 668968483 2065 1 0.0484261501210654 RFvsST 168824 689807370 689638547 no 44.7941606258382 TraesCS1B01G452000 chr1B_669027529 chr1B 669027529 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 669027373 669033817 6445 2 0.0310318076027929 RFvsST 168824 689807370 689638547 no 225.711863702743 TraesCS1B01G452000 chr1B_669027556 chr1B 669027556 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 669027373 669033817 6445 2 0.0310318076027929 RFvsST 168824 689807370 689638547 no 225.711863702743 TraesCS1B01G459300 chr1B_673178018 chr1B 673178018 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 673173279 673175613 2335 1 0.0428265524625268 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G459500 chr1B_673640885 chr1B 673640885 C T C T 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673642011 chr1B 673642011 A C A C 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673642008 chr1B 673642008 A G A G 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673642113 chr1B 673642113 G C G C 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673640864 chr1B 673640864 G G A A 4 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673640094 chr1B 673640094 C C T T 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673640536 chr1B 673640536 A G A G 3 missense_variant MODERATE transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673642055 chr1B 673642055 C C G G 4 missense_variant MODERATE transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673639695 chr1B 673639695 G A G A 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459500 chr1B_673642068 chr1B 673642068 C G C G 3 synonymous_variant LOW transcript unique_Triplet 673635862 673642128 6267 10 0.15956598053295 RFvsST 168824 689807370 689638547 no 493.509688456717 TraesCS1B01G459800 chr1B_673786213 chr1B 673786213 C C T T 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786315 chr1B 673786315 T T C C 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784725 chr1B 673784725 A A C C 4 missense_variant MODERATE transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786162 chr1B 673786162 C C T T 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785971 chr1B 673785971 T A T A 3 missense_variant MODERATE transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785829 chr1B 673785829 G G A A 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786009 chr1B 673786009 T T C C 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786120 chr1B 673786120 A A G G 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785689 chr1B 673785689 A G A G 3 missense_variant MODERATE transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784357 chr1B 673784357 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786027 chr1B 673786027 C C T T 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784849 chr1B 673784849 G G A A 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785832 chr1B 673785832 G G A A 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784675 chr1B 673784675 G G C C 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786114 chr1B 673786114 A A G G 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785444 chr1B 673785444 A A G G 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784525 chr1B 673784525 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785940 chr1B 673785940 G G A A 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784846 chr1B 673784846 G G C C 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786486 chr1B 673786486 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784528 chr1B 673784528 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673784295 chr1B 673784295 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673785910 chr1B 673785910 C C T T 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G459800 chr1B_673786051 chr1B 673786051 G G A A 4 synonymous_variant LOW transcript non_Triplet 673784661 673786441 1781 24 1.34755755193711 RFvsST 168824 689807370 689638547 no 285.430033706979 TraesCS1B01G460700 chr1B_674003687 chr1B 674003687 C C G G 4 synonymous_variant LOW transcript non_Triplet 674003102 674004740 1639 2 0.12202562538133 RFvsST 168824 689807370 689638547 no 122.661609422607 TraesCS1B01G460700 chr1B_674003474 chr1B 674003474 G G C C 4 synonymous_variant LOW transcript non_Triplet 674003102 674004740 1639 2 0.12202562538133 RFvsST 168824 689807370 689638547 no 122.661609422607 TraesCS1B01G461000 chr1B_674080971 chr1B 674080971 A A T T 4 missense_variant MODERATE transcript non_Triplet 674079906 674081056 1151 1 0.0868809730668983 RFvsST 168824 689807370 689638547 no 80.9303342703462 TraesCS1B01G461500 chr1B_674498454 chr1B 674498454 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 674495007 674495207 201 1 0.497512437810945 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G461800 chr1B_674607766 chr1B 674607766 T T C C 4 synonymous_variant LOW transcript unique_Triplet 674605766 674608465 2700 2 0.0740740740740741 RFvsST 168824 689807370 689638547 no 90.1842596039783 TraesCS1B01G461800 chr1B_674607748 chr1B 674607748 A A G G 4 synonymous_variant LOW transcript unique_Triplet 674605766 674608465 2700 2 0.0740740740740741 RFvsST 168824 689807370 689638547 no 90.1842596039783 TraesCS1B01G461900 chr1B_674625158 chr1B 674625158 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 674619916 674625756 5841 3 0.0513610683102209 RFvsST 168824 689807370 689638547 no 194.028594367508 TraesCS1B01G461900 chr1B_674621258 chr1B 674621258 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 674619916 674625756 5841 3 0.0513610683102209 RFvsST 168824 689807370 689638547 no 194.028594367508 TraesCS1B01G461900 chr1B_674619794 chr1B 674619794 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 674619916 674625756 5841 3 0.0513610683102209 RFvsST 168824 689807370 689638547 no 194.028594367508 TraesCS1B01G463100 chr1B_675376769 chr1B 675376769 G G A A 4 missense_variant MODERATE transcript unique_Triplet 675373947 675376864 2918 1 0.0342700479780672 RFvsST 168824 689807370 689638547 no 36.3377634820609 TraesCS1B01G464400 chr1B_675900902 chr1B 675900902 G G A A 4 missense_variant MODERATE transcript non_Triplet 675900550 675901969 1420 2 0.140845070422535 RFvsST 168824 689807370 689638547 no 30.7590869270273 TraesCS1B01G464400 chr1B_675900966 chr1B 675900966 A A G G 4 synonymous_variant LOW transcript non_Triplet 675900550 675901969 1420 2 0.140845070422535 RFvsST 168824 689807370 689638547 no 30.7590869270273 TraesCS1B01G464900 chr1B_676075734 chr1B 676075734 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 676070346 676072028 1683 1 0.05941770647653 RFvsST 168824 689807370 689638547 no 25.0544262449885 TraesCS1B01G465000 chr1B_676074332 chr1B 676074332 A A G G 4 missense_variant MODERATE transcript non_Triplet 676074080 676075728 1649 1 0.0606428138265616 RFvsST 168824 689807370 689638547 no 106.857023121509 TraesCS1B01G465900 chr1B_676711397 chr1B 676711397 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 676707427 676710411 2985 2 0.0670016750418761 RFvsST 168824 689807370 689638547 no 35.1584448644607 TraesCS1B01G465900 chr1B_676711486 chr1B 676711486 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 676707427 676710411 2985 2 0.0670016750418761 RFvsST 168824 689807370 689638547 no 35.1584448644607 TraesCS1B01G466200 chr1B_676745887 chr1B 676745887 A A C C 4 missense_variant MODERATE transcript unique_Triplet 676745883 676747222 1340 3 0.223880597014925 RFvsST 168824 689807370 689638547 no 446.779318201952 TraesCS1B01G466200 chr1B_676745909 chr1B 676745909 A A G G 4 synonymous_variant LOW transcript unique_Triplet 676745883 676747222 1340 3 0.223880597014925 RFvsST 168824 689807370 689638547 no 446.779318201952 TraesCS1B01G466200 chr1B_676746463 chr1B 676746463 G G A A 4 synonymous_variant LOW transcript unique_Triplet 676745883 676747222 1340 3 0.223880597014925 RFvsST 168824 689807370 689638547 no 446.779318201952 TraesCS1B01G466300 chr1B_676779026 chr1B 676779026 A A G G 4 synonymous_variant LOW transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G466300 chr1B_676777440 chr1B 676777440 C C T T 4 synonymous_variant LOW transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G466300 chr1B_676775542 chr1B 676775542 A A G G 4 synonymous_variant LOW transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G466300 chr1B_676775365 chr1B 676775365 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G466300 chr1B_676776721 chr1B 676776721 A A G G 4 synonymous_variant LOW transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G466300 chr1B_676775482 chr1B 676775482 C C T T 4 synonymous_variant LOW transcript unique_Triplet 676775473 676779684 4212 6 0.142450142450142 RFvsST 168824 689807370 689638547 no 184.665521589564 TraesCS1B01G467100 chr1B_677092857 chr1B 677092857 C C A A 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677093298 chr1B 677093298 C C T T 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677092899 chr1B 677092899 T T G G 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677091758 chr1B 677091758 T T C C 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677092926 chr1B 677092926 A A G G 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677090910 chr1B 677090910 C C T T 4 missense_variant MODERATE transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677091811 chr1B 677091811 A A G G 4 missense_variant MODERATE transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677091402 chr1B 677091402 T T C C 4 missense_variant MODERATE transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G467100 chr1B_677093352 chr1B 677093352 C C T T 4 synonymous_variant LOW transcript unique_Triplet 677090894 677093451 2558 9 0.351837372947615 RFvsST 168824 689807370 689638547 no 335.924843282681 TraesCS1B01G468600 chr1B_677914707 chr1B 677914707 G G C C 4 missense_variant MODERATE transcript unique_Triplet 677913660 677915128 1469 5 0.340367597004765 RFvsST 168824 689807370 689638547 no 94.5378536108862 TraesCS1B01G468600 chr1B_677913901 chr1B 677913901 G G C C 4 missense_variant MODERATE transcript unique_Triplet 677913660 677915128 1469 5 0.340367597004765 RFvsST 168824 689807370 689638547 no 94.5378536108862 TraesCS1B01G468600 chr1B_677913904 chr1B 677913904 A A G G 4 synonymous_variant LOW transcript unique_Triplet 677913660 677915128 1469 5 0.340367597004765 RFvsST 168824 689807370 689638547 no 94.5378536108862 TraesCS1B01G468600 chr1B_677914723 chr1B 677914723 T T C C 4 missense_variant MODERATE transcript unique_Triplet 677913660 677915128 1469 5 0.340367597004765 RFvsST 168824 689807370 689638547 no 94.5378536108862 TraesCS1B01G468600 chr1B_677914352 chr1B 677914352 C C G G 4 synonymous_variant LOW transcript unique_Triplet 677913660 677915128 1469 5 0.340367597004765 RFvsST 168824 689807370 689638547 no 94.5378536108862 TraesCS1B01G468700 chr1B_678046705 chr1B 678046705 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 678046801 678049584 2784 5 0.179597701149425 RFvsST 168824 689807370 689638547 no 25.1073780063839 TraesCS1B01G468700 chr1B_678049417 chr1B 678049417 T T C C 4 missense_variant MODERATE transcript unique_Triplet 678046801 678049584 2784 5 0.179597701149425 RFvsST 168824 689807370 689638547 no 25.1073780063839 TraesCS1B01G468700 chr1B_678049048 chr1B 678049048 G G A A 4 synonymous_variant LOW transcript unique_Triplet 678046801 678049584 2784 5 0.179597701149425 RFvsST 168824 689807370 689638547 no 25.1073780063839 TraesCS1B01G468700 chr1B_678047653 chr1B 678047653 G G C C 4 missense_variant MODERATE transcript unique_Triplet 678046801 678049584 2784 5 0.179597701149425 RFvsST 168824 689807370 689638547 no 25.1073780063839 TraesCS1B01G468700 chr1B_678049404 chr1B 678049404 T T C C 4 synonymous_variant LOW transcript unique_Triplet 678046801 678049584 2784 5 0.179597701149425 RFvsST 168824 689807370 689638547 no 25.1073780063839 TraesCS1B01G468800 chr1B_678049680 chr1B 678049680 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 678050964 678056351 5388 2 0.0371195248700817 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G468800 chr1B_678049669 chr1B 678049669 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 678050964 678056351 5388 2 0.0371195248700817 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G469200 chr1B_678259418 chr1B 678259418 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 678254433 678257407 2975 1 0.0336134453781513 RFvsST 168824 689807370 689638547 no 89.9228409951588 TraesCS1B01G470800 chr1B_679030941 chr1B 679030941 C C G G 4 missense_variant MODERATE transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G470800 chr1B_679031153 chr1B 679031153 A A G G 4 missense_variant MODERATE transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G470800 chr1B_679031107 chr1B 679031107 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G470800 chr1B_679031356 chr1B 679031356 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G470800 chr1B_679030833 chr1B 679030833 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G470800 chr1B_679033110 chr1B 679033110 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 679030909 679033070 2162 6 0.277520814061055 RFvsST 168824 689807370 689638547 no 406.41328434253 TraesCS1B01G471400 chr1B_679656337 chr1B 679656337 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679652635 679656459 3825 3 0.0784313725490196 RFvsST 168824 689807370 689638547 no 81.4298559635037 TraesCS1B01G471400 chr1B_679654006 chr1B 679654006 C G A G,A 6 synonymous_variant LOW transcript unique_Triplet 679652635 679656459 3825 3 0.0784313725490196 RFvsST 168824 689807370 689638547 no 81.4298559635037 TraesCS1B01G471400 chr1B_679654257 chr1B 679654257 C C T T 4 missense_variant MODERATE transcript unique_Triplet 679652635 679656459 3825 3 0.0784313725490196 RFvsST 168824 689807370 689638547 no 81.4298559635037 TraesCS1B01G471900 chr1B_679747493 chr1B 679747493 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 679745005 679746210 1206 1 0.0829187396351575 RFvsST 168824 689807370 689638547 no No_match TraesCS1B01G472000 chr1B_679748056 chr1B 679748056 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748501 chr1B 679748501 G G A A 4 missense_variant MODERATE transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748923 chr1B 679748923 C C T T 4 synonymous_variant LOW transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679749200 chr1B 679749200 A A G G 4 missense_variant MODERATE transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748141 chr1B 679748141 T T C C 4 missense_variant MODERATE transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748932 chr1B 679748932 T T G G 4 missense_variant MODERATE transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748728 chr1B 679748728 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472000 chr1B_679748182 chr1B 679748182 G G C C 4 synonymous_variant LOW transcript unique_Triplet 679747936 679749264 1329 8 0.601956358164033 RFvsST 168824 689807370 689638547 no 191.47815190257 TraesCS1B01G472100 chr1B_679757475 chr1B 679757475 C C G G 4 missense_variant MODERATE transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679757609 chr1B 679757609 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679757636 chr1B 679757636 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679757492 chr1B 679757492 G G C C 4 missense_variant MODERATE transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679755362 chr1B 679755362 C C G G 4 synonymous_variant LOW transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679757474 chr1B 679757474 C C G G 4 synonymous_variant LOW transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472100 chr1B_679755810 chr1B 679755810 C C T T 4 missense_variant MODERATE transcript unique_Triplet 679753656 679757670 4015 7 0.174346201743462 RFvsST 168824 689807370 689638547 no 285.818847287807 TraesCS1B01G472200 chr1B_680163237 chr1B 680163237 T C T C 3 synonymous_variant LOW transcript non_Triplet 680162719 680164783 2065 2 0.0968523002421307 RFvsST 168824 689807370 689638547 no 4.19262136946976 TraesCS1B01G472200 chr1B_680163273 chr1B 680163273 G A G A 3 synonymous_variant LOW transcript non_Triplet 680162719 680164783 2065 2 0.0968523002421307 RFvsST 168824 689807370 689638547 no 4.19262136946976 TraesCS1B01G472500 chr1B_680862694 chr1B 680862694 T T C C 4 missense_variant MODERATE transcript unique_Triplet 680861823 680867706 5884 1 0.0169952413324269 RFvsST 168824 689807370 689638547 no 1129.34846139264 TraesCS1B01G472800 chr1B_680998394 chr1B 680998394 C G C G 3 missense_variant MODERATE transcript non_Triplet 680997935 680999049 1115 1 0.0896860986547085 RFvsST 168824 689807370 689638547 no 6.60624155587545 TraesCS1B01G474800 chr1B_683460488 chr1B 683460488 C C T T 4 missense_variant MODERATE transcript unique_Triplet 683459637 683471227 11591 1 0.00862738331464067 RFvsST 168824 689807370 689638547 no 547.495497531327 TraesCS1B01G475100 chr1B_683482747 chr1B 683482747 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 683484091 683485109 1019 3 0.294406280667321 RFvsST 168824 689807370 689638547 no 99.0283672595501 TraesCS1B01G475100 chr1B_683484352 chr1B 683484352 G A G A 3 missense_variant MODERATE transcript non_Triplet 683484091 683485109 1019 3 0.294406280667321 RFvsST 168824 689807370 689638547 no 99.0283672595501 TraesCS1B01G475100 chr1B_683482738 chr1B 683482738 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 683484091 683485109 1019 3 0.294406280667321 RFvsST 168824 689807370 689638547 no 99.0283672595501 TraesCS1B01G475700 chr1B_684068154 chr1B 684068154 A A G G 4 intron_variant MODIFIER transcript non_Triplet 684067251 684069246 1996 1 0.0501002004008016 RFvsST 168824 689807370 689638547 no 102.534516145538 TraesCS1B01G478400 chr1B_686843854 chr1B 686843854 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 686839567 686843815 4249 2 0.0470698987997176 RFvsST 168824 689807370 689638547 no 660.544665781199 TraesCS1B01G478400 chr1B_686843799 chr1B 686843799 C C G G 4 missense_variant MODERATE transcript unique_Triplet 686839567 686843815 4249 2 0.0470698987997176 RFvsST 168824 689807370 689638547 no 660.544665781199 TraesCS1B01G478700 chr1B_686932240 chr1B 686932240 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G478700 chr1B_686931627 chr1B 686931627 G A G A 3 synonymous_variant LOW transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G478700 chr1B_686928437 chr1B 686928437 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G478700 chr1B_686930773 chr1B 686930773 G G C C 4 missense_variant MODERATE transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G478700 chr1B_686931621 chr1B 686931621 C T C T 3 synonymous_variant LOW transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G478700 chr1B_686932290 chr1B 686932290 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 686928468 686931886 3419 6 0.175489909330214 RFvsST 168824 689807370 689638547 no 466.031415303717 TraesCS1B01G479600 chr1B_687402972 chr1B 687402972 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 687401178 687402901 1724 2 0.116009280742459 RFvsST 168824 689807370 689638547 no 201.125569104125 TraesCS1B01G479600 chr1B_687402129 chr1B 687402129 G C G C 3 missense_variant MODERATE transcript unique_Triplet 687401178 687402901 1724 2 0.116009280742459 RFvsST 168824 689807370 689638547 no 201.125569104125 TraesCS1B01G479700 chr1B_687401857 chr1B 687401857 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 687404215 687405825 1611 1 0.0620732464307883 RFvsST 168824 689807370 689638547 no 6.41334068228447 TraesCS1B01G480100 chr1B_687720416 chr1B 687720416 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 687710716 687719885 9170 2 0.0218102508178844 RFvsST 168824 689807370 689638547 no 85.3278540084537 TraesCS1B01G480100 chr1B_687720400 chr1B 687720400 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 687710716 687719885 9170 2 0.0218102508178844 RFvsST 168824 689807370 689638547 no 85.3278540084537 TraesCS1B01G480500 chr1B_688240168 chr1B 688240168 T T C C 4 missense_variant MODERATE transcript unique_Triplet 688236349 688240223 3875 2 0.0516129032258065 RFvsST 168824 689807370 689638547 no 25.6424747318956 TraesCS1B01G480500 chr1B_688233114 chr1B 688233114 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 688236349 688240223 3875 2 0.0516129032258065 RFvsST 168824 689807370 689638547 no 25.6424747318956 TraesCS1B01G480600 chr1B_688283157 chr1B 688283157 G G A A 4 synonymous_variant LOW transcript unique_Triplet 688282509 688286431 3923 3 0.0764720876879939 RFvsST 168824 689807370 689638547 no 1342.54252525033 TraesCS1B01G480600 chr1B_688284912 chr1B 688284912 A A G G 4 synonymous_variant LOW transcript unique_Triplet 688282509 688286431 3923 3 0.0764720876879939 RFvsST 168824 689807370 689638547 no 1342.54252525033 TraesCS1B01G480600 chr1B_688286247 chr1B 688286247 T T C C 4 missense_variant MODERATE transcript unique_Triplet 688282509 688286431 3923 3 0.0764720876879939 RFvsST 168824 689807370 689638547 no 1342.54252525033 TraesCS1B01G480700 chr1B_688352469 chr1B 688352469 G G A A 4 missense_variant MODERATE transcript non_Triplet 688352414 688354696 2283 2 0.0876040297853701 RFvsST 168824 689807370 689638547 no 183.770137442659 TraesCS1B01G480700 chr1B_688353573 chr1B 688353573 C C G G 4 missense_variant MODERATE transcript non_Triplet 688352414 688354696 2283 2 0.0876040297853701 RFvsST 168824 689807370 689638547 no 183.770137442659 TraesCS1D01G001800 chr1D_461325 chr1D 461325 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 458727 460352 1626 2 0.1230012300123 RFvsST 73178 87660453 87587276 no 38.2327929404421 TraesCS1D01G001800 chr1D_461301 chr1D 461301 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 458727 460352 1626 2 0.1230012300123 RFvsST 73178 87660453 87587276 no 38.2327929404421 TraesCS1D01G002500 chr1D_577596 chr1D 577596 T T C C 4 missense_variant MODERATE transcript unique_Triplet 577573 582806 5234 1 0.019105846388995 RFvsST 73178 87660453 87587276 no 392.401524808493 TraesCS1D01G002600 chr1D_613608 chr1D 613608 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 613670 616230 2561 4 0.156188988676298 RFvsST 73178 87660453 87587276 no 17.116660507392 TraesCS1D01G002600 chr1D_613624 chr1D 613624 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 613670 616230 2561 4 0.156188988676298 RFvsST 73178 87660453 87587276 no 17.116660507392 TraesCS1D01G002600 chr1D_613552 chr1D 613552 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 613670 616230 2561 4 0.156188988676298 RFvsST 73178 87660453 87587276 no 17.116660507392 TraesCS1D01G002600 chr1D_613627 chr1D 613627 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 613670 616230 2561 4 0.156188988676298 RFvsST 73178 87660453 87587276 no 17.116660507392 TraesCS1D01G005400 chr1D_2496006 chr1D 2496006 C C G G 4 missense_variant MODERATE transcript non_Triplet 2495880 2499659 3780 1 0.0264550264550265 RFvsST 73178 87660453 87587276 no 470.196238899387 TraesCS1D01G009200 chr1D_4877342 chr1D 4877342 T T C C 4 missense_variant MODERATE transcript non_Triplet 4875292 4877853 2562 1 0.039032006245121 RFvsST 73178 87660453 87587276 no 171.633376730589 TraesCS1D01G017500 chr1D_7833882 chr1D 7833882 C C T T 4 synonymous_variant LOW transcript non_Triplet 7833513 7834237 725 1 0.137931034482759 RFvsST 73178 87660453 87587276 no 34.1789488614533 TraesCS1D01G017700 chr1D_7876931 chr1D 7876931 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876326 chr1D 7876326 G G C C 4 missense_variant MODERATE transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876578 chr1D 7876578 T T G G 4 missense_variant MODERATE transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876298 chr1D 7876298 C C T T 4 missense_variant MODERATE transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876555 chr1D 7876555 A A G G 4 synonymous_variant LOW transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876703 chr1D 7876703 T T C C 4 missense_variant MODERATE transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017700 chr1D_7876717 chr1D 7876717 C C T T 4 synonymous_variant LOW transcript non_Triplet 7874407 7876992 2586 7 0.270688321732405 RFvsST 73178 87660453 87587276 no 704.095067971559 TraesCS1D01G017800 chr1D_7879375 chr1D 7879375 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 7877418 7880329 2912 2 0.0686813186813187 RFvsST 73178 87660453 87587276 no 545.582676392951 TraesCS1D01G017800 chr1D_7879843 chr1D 7879843 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 7877418 7880329 2912 2 0.0686813186813187 RFvsST 73178 87660453 87587276 no 545.582676392951 TraesCS1D01G017900 chr1D_7897855 chr1D 7897855 C C T T 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7897853 chr1D 7897853 C C T T 4 synonymous_variant LOW transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7896997 chr1D 7896997 A A C C 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7896924 chr1D 7896924 A A T T 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7898639 chr1D 7898639 A A G G 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7897509 chr1D 7897509 C C A A 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7898804 chr1D 7898804 T T G G 4 missense_variant MODERATE transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G017900 chr1D_7898655 chr1D 7898655 C C T T 4 synonymous_variant LOW transcript non_Triplet 7896854 7899155 2302 8 0.347523892267593 RFvsST 73178 87660453 87587276 no 1295.39413587877 TraesCS1D01G018000 chr1D_7901911 chr1D 7901911 T T C C 4 synonymous_variant LOW transcript non_Triplet 7899633 7902587 2955 3 0.101522842639594 RFvsST 73178 87660453 87587276 no 212.662236405762 TraesCS1D01G018000 chr1D_7899740 chr1D 7899740 A A C C 4 missense_variant MODERATE transcript non_Triplet 7899633 7902587 2955 3 0.101522842639594 RFvsST 73178 87660453 87587276 no 212.662236405762 TraesCS1D01G018000 chr1D_7896838 chr1D 7896838 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 7899633 7902587 2955 3 0.101522842639594 RFvsST 73178 87660453 87587276 no 212.662236405762 TraesCS1D01G018200 chr1D_7919057 chr1D 7919057 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 7913129 7917136 4008 5 0.124750499001996 RFvsST 73178 87660453 87587276 no 129.251999550497 TraesCS1D01G018200 chr1D_7913252 chr1D 7913252 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 7913129 7917136 4008 5 0.124750499001996 RFvsST 73178 87660453 87587276 no 129.251999550497 TraesCS1D01G018200 chr1D_7918807 chr1D 7918807 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 7913129 7917136 4008 5 0.124750499001996 RFvsST 73178 87660453 87587276 no 129.251999550497 TraesCS1D01G018200 chr1D_7913291 chr1D 7913291 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 7913129 7917136 4008 5 0.124750499001996 RFvsST 73178 87660453 87587276 no 129.251999550497 TraesCS1D01G018200 chr1D_7919058 chr1D 7919058 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 7913129 7917136 4008 5 0.124750499001996 RFvsST 73178 87660453 87587276 no 129.251999550497 TraesCS1D01G018300 chr1D_7921208 chr1D 7921208 C C G G 4 synonymous_variant LOW transcript unique_Triplet 7919184 7921453 2270 1 0.0440528634361234 RFvsST 73178 87660453 87587276 no 651.803699818291 TraesCS1D01G018400 chr1D_7949256 chr1D 7949256 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 7947647 7949249 1603 1 0.0623830318153462 RFvsST 73178 87660453 87587276 no 186.32439397416 TraesCS1D01G019600 chr1D_8605912 chr1D 8605912 T T C C 4 missense_variant MODERATE transcript non_Triplet 8605415 8606965 1551 1 0.0644745325596389 RFvsST 73178 87660453 87587276 no 328.158531748807 TraesCS1D01G024700 chr1D_10380703 chr1D 10380703 G G T T 4 missense_variant MODERATE transcript unique_Triplet 10380678 10382428 1751 1 0.0571102227298686 RFvsST 73178 87660453 87587276 no 82.8567579200346 TraesCS1D01G025400 chr1D_10432903 chr1D 10432903 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 10432779 10437477 4699 3 0.0638433709299851 RFvsST 73178 87660453 87587276 no 240.979296155965 TraesCS1D01G025400 chr1D_10433530 chr1D 10433530 G G C C 4 synonymous_variant LOW transcript unique_Triplet 10432779 10437477 4699 3 0.0638433709299851 RFvsST 73178 87660453 87587276 no 240.979296155965 TraesCS1D01G025400 chr1D_10432902 chr1D 10432902 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 10432779 10437477 4699 3 0.0638433709299851 RFvsST 73178 87660453 87587276 no 240.979296155965 TraesCS1D01G028800 chr1D_11398881 chr1D 11398881 T T C C 4 missense_variant MODERATE transcript non_Triplet 11397984 11401601 3618 3 0.0829187396351575 RFvsST 73178 87660453 87587276 no 106.18278802196 TraesCS1D01G028800 chr1D_11398957 chr1D 11398957 C C T T 4 missense_variant MODERATE transcript non_Triplet 11397984 11401601 3618 3 0.0829187396351575 RFvsST 73178 87660453 87587276 no 106.18278802196 TraesCS1D01G028800 chr1D_11398780 chr1D 11398780 A A G G 4 synonymous_variant LOW transcript non_Triplet 11397984 11401601 3618 3 0.0829187396351575 RFvsST 73178 87660453 87587276 no 106.18278802196 TraesCS1D01G029000 chr1D_11413694 chr1D 11413694 A A G G 4 synonymous_variant LOW transcript non_Triplet 11413023 11414636 1614 4 0.247831474597274 RFvsST 73178 87660453 87587276 no 57.7680117020094 TraesCS1D01G029000 chr1D_11414123 chr1D 11414123 G G A A 4 synonymous_variant LOW transcript non_Triplet 11413023 11414636 1614 4 0.247831474597274 RFvsST 73178 87660453 87587276 no 57.7680117020094 TraesCS1D01G029000 chr1D_11414217 chr1D 11414217 G G C C 4 missense_variant MODERATE transcript non_Triplet 11413023 11414636 1614 4 0.247831474597274 RFvsST 73178 87660453 87587276 no 57.7680117020094 TraesCS1D01G029000 chr1D_11414215 chr1D 11414215 C C T T 4 missense_variant MODERATE transcript non_Triplet 11413023 11414636 1614 4 0.247831474597274 RFvsST 73178 87660453 87587276 no 57.7680117020094 TraesCS1D01G029900 chr1D_11664569 chr1D 11664569 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11657093 chr1D 11657093 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11664570 chr1D 11664570 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11661218 chr1D 11661218 A A G G 4 synonymous_variant LOW transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11657272 chr1D 11657272 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11659240 chr1D 11659240 C C T T 4 missense_variant MODERATE transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11656946 chr1D 11656946 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11659307 chr1D 11659307 C C T T 4 synonymous_variant LOW transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G029900 chr1D_11661242 chr1D 11661242 G G A A 4 synonymous_variant LOW transcript non_Triplet 11658941 11662150 3210 9 0.280373831775701 RFvsST 73178 87660453 87587276 no 103.99231199474 TraesCS1D01G030000 chr1D_11667770 chr1D 11667770 C C G G 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11664598 chr1D 11664598 G G A A 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11664647 chr1D 11664647 C C T T 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667811 chr1D 11667811 C C T T 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11666779 chr1D 11666779 G G T T 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667812 chr1D 11667812 A A G G 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667589 chr1D 11667589 G G T T 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11664649 chr1D 11664649 T T C C 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667613 chr1D 11667613 T T C C 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667966 chr1D 11667966 C C T T 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667463 chr1D 11667463 C C T T 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11666806 chr1D 11666806 T T C C 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11666642 chr1D 11666642 T T A A 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667963 chr1D 11667963 T T C C 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667268 chr1D 11667268 C C T T 4 missense_variant MODERATE transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667493 chr1D 11667493 C C G G 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667544 chr1D 11667544 A A T T 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667499 chr1D 11667499 C C T T 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030000 chr1D_11667225 chr1D 11667225 G G C C 4 synonymous_variant LOW transcript non_Triplet 11664577 11668738 4162 19 0.456511292647765 RFvsST 73178 87660453 87587276 no 118.117788719561 TraesCS1D01G030300 chr1D_11781861 chr1D 11781861 T T C C 4 synonymous_variant LOW transcript unique_Triplet 11781532 11783040 1509 2 0.132538104705103 RFvsST 73178 87660453 87587276 no 372.061499459107 TraesCS1D01G030300 chr1D_11782990 chr1D 11782990 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 11781532 11783040 1509 2 0.132538104705103 RFvsST 73178 87660453 87587276 no 372.061499459107 TraesCS1D01G030500 chr1D_11879065 chr1D 11879065 A A G G 4 missense_variant MODERATE transcript non_Triplet 11878948 11879438 491 2 0.407331975560081 RFvsST 73178 87660453 87587276 no 1232.37044255986 TraesCS1D01G030500 chr1D_11878880 chr1D 11878880 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 11878948 11879438 491 2 0.407331975560081 RFvsST 73178 87660453 87587276 no 1232.37044255986 TraesCS1D01G031400 chr1D_12309584 chr1D 12309584 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12311013 12314727 3715 1 0.0269179004037685 RFvsST 73178 87660453 87587276 no 15.2390476846399 TraesCS1D01G034700 chr1D_15307798 chr1D 15307798 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 15305028 15314662 9635 1 0.0103788271925272 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G035300 chr1D_16379220 chr1D 16379220 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 16379080 16381260 2181 5 0.229252636405319 RFvsST 73178 87660453 87587276 no 121.449954716951 TraesCS1D01G035300 chr1D_16380511 chr1D 16380511 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 16379080 16381260 2181 5 0.229252636405319 RFvsST 73178 87660453 87587276 no 121.449954716951 TraesCS1D01G035300 chr1D_16381053 chr1D 16381053 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 16379080 16381260 2181 5 0.229252636405319 RFvsST 73178 87660453 87587276 no 121.449954716951 TraesCS1D01G035300 chr1D_16380921 chr1D 16380921 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 16379080 16381260 2181 5 0.229252636405319 RFvsST 73178 87660453 87587276 no 121.449954716951 TraesCS1D01G035300 chr1D_16380640 chr1D 16380640 A T A T 3 synonymous_variant LOW transcript nonUnique_Triplet 16379080 16381260 2181 5 0.229252636405319 RFvsST 73178 87660453 87587276 no 121.449954716951 TraesCS1D01G035400 chr1D_16381542 chr1D 16381542 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 16382533 16385555 3023 2 0.0661594442606682 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G035400 chr1D_16381475 chr1D 16381475 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 16382533 16385555 3023 2 0.0661594442606682 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G036000 chr1D_16788447 chr1D 16788447 C T C T 3 missense_variant MODERATE transcript unique_Triplet 16788356 16789889 1534 3 0.195567144719687 RFvsST 73178 87660453 87587276 no 1248.51690168337 TraesCS1D01G036000 chr1D_16792428 chr1D 16792428 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 16788356 16789889 1534 3 0.195567144719687 RFvsST 73178 87660453 87587276 no 1248.51690168337 TraesCS1D01G036000 chr1D_16792444 chr1D 16792444 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 16788356 16789889 1534 3 0.195567144719687 RFvsST 73178 87660453 87587276 no 1248.51690168337 TraesCS1D01G036900 chr1D_17237591 chr1D 17237591 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 17236769 17237668 900 1 0.111111111111111 RFvsST 73178 87660453 87587276 no 197.603994101429 TraesCS1D01G042100 chr1D_20569027 chr1D 20569027 T T A A 4 missense_variant MODERATE transcript non_Triplet 20568291 20569682 1392 1 0.0718390804597701 RFvsST 73178 87660453 87587276 no 629.627238477733 TraesCS1D01G052200 chr1D_33473101 chr1D 33473101 T C T C 3 synonymous_variant LOW transcript unique_Triplet 33469891 33473840 3950 2 0.0506329113924051 RFvsST 73178 87660453 87587276 no 23.2791942406043 TraesCS1D01G052200 chr1D_33473079 chr1D 33473079 G A G A 3 missense_variant MODERATE transcript unique_Triplet 33469891 33473840 3950 2 0.0506329113924051 RFvsST 73178 87660453 87587276 no 23.2791942406043 TraesCS1D01G053500 chr1D_34636261 chr1D 34636261 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 34636209 34639659 3451 1 0.0289771080846132 RFvsST 73178 87660453 87587276 no 306.557482986431 TraesCS1D01G053700 chr1D_34942729 chr1D 34942729 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053700 chr1D_34943052 chr1D 34943052 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053700 chr1D_34940622 chr1D 34940622 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053700 chr1D_34940743 chr1D 34940743 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053700 chr1D_34942578 chr1D 34942578 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053700 chr1D_34944936 chr1D 34944936 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 34943205 34944312 1108 6 0.541516245487365 RFvsST 73178 87660453 87587276 no 2381.68699592268 TraesCS1D01G053800 chr1D_34945067 chr1D 34945067 G A G A 3 synonymous_variant LOW transcript unique_Triplet 34944977 34946285 1309 2 0.152788388082506 RFvsST 73178 87660453 87587276 no 115.016234375946 TraesCS1D01G053800 chr1D_34947132 chr1D 34947132 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 34944977 34946285 1309 2 0.152788388082506 RFvsST 73178 87660453 87587276 no 115.016234375946 TraesCS1D01G053900 chr1D_34947287 chr1D 34947287 G A G A 3 synonymous_variant LOW transcript unique_Triplet 34947158 34949157 2000 1 0.05 RFvsST 73178 87660453 87587276 no 39.3082353193983 TraesCS1D01G054100 chr1D_35640403 chr1D 35640403 T G T G 3 missense_variant MODERATE transcript unique_Triplet 35639416 35645620 6205 2 0.032232070910556 RFvsST 73178 87660453 87587276 no 167.019388400268 TraesCS1D01G054100 chr1D_35640111 chr1D 35640111 C G C G 3 missense_variant MODERATE transcript unique_Triplet 35639416 35645620 6205 2 0.032232070910556 RFvsST 73178 87660453 87587276 no 167.019388400268 TraesCS1D01G054200 chr1D_35649653 chr1D 35649653 A T A T 3 missense_variant MODERATE transcript non_Triplet 35649432 35654365 4934 3 0.0608025942440211 RFvsST 73178 87660453 87587276 no 65.8764910924036 TraesCS1D01G054200 chr1D_35650393 chr1D 35650393 G T G T 3 synonymous_variant LOW transcript non_Triplet 35649432 35654365 4934 3 0.0608025942440211 RFvsST 73178 87660453 87587276 no 65.8764910924036 TraesCS1D01G054200 chr1D_35649801 chr1D 35649801 C T C T 3 missense_variant MODERATE transcript non_Triplet 35649432 35654365 4934 3 0.0608025942440211 RFvsST 73178 87660453 87587276 no 65.8764910924036 TraesCS1D01G057100 chr1D_37527222 chr1D 37527222 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 37529191 37529691 501 4 0.798403193612774 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G057100 chr1D_37526977 chr1D 37526977 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 37529191 37529691 501 4 0.798403193612774 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G057100 chr1D_37527037 chr1D 37527037 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 37529191 37529691 501 4 0.798403193612774 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G057100 chr1D_37526969 chr1D 37526969 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 37529191 37529691 501 4 0.798403193612774 RFvsST 73178 87660453 87587276 no No_match TraesCS1D01G058300 chr1D_38550592 chr1D 38550592 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 38549729 38552650 2922 2 0.0684462696783025 RFvsST 73178 87660453 87587276 no 5983.21370852353 TraesCS1D01G058300 chr1D_38549524 chr1D 38549524 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 38549729 38552650 2922 2 0.0684462696783025 RFvsST 73178 87660453 87587276 no 5983.21370852353 TraesCS1D01G058900 chr1D_38780888 chr1D 38780888 T T C C 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781426 chr1D 38781426 A A G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781555 chr1D 38781555 A A G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38780319 chr1D 38780319 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38780887 chr1D 38780887 C C T T 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38786481 chr1D 38786481 G G C C 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781446 chr1D 38781446 T T C C 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788498 chr1D 38788498 T T C C 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788934 chr1D 38788934 A A G G 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781003 chr1D 38781003 A A T T 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788479 chr1D 38788479 A A T T 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38787678 chr1D 38787678 G G A A 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788092 chr1D 38788092 C C G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788001 chr1D 38788001 G G T T 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38786473 chr1D 38786473 A A G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38780285 chr1D 38780285 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781582 chr1D 38781582 G G A A 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38781042 chr1D 38781042 C C A A 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788037 chr1D 38788037 C C A A 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38787614 chr1D 38787614 G G A A 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38787006 chr1D 38787006 T T G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38789195 chr1D 38789195 A A G G 4 synonymous_variant LOW transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38787954 chr1D 38787954 G G T T 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38786690 chr1D 38786690 A A G G 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G058900 chr1D_38788532 chr1D 38788532 G G C C 4 missense_variant MODERATE transcript unique_Triplet 38780587 38789555 8969 25 0.278737874902442 RFvsST 73178 87660453 87587276 no 714.643527701259 TraesCS1D01G059000 chr1D_38908827 chr1D 38908827 T T C C 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 38906988 38911554 4567 2 0.0437924239106635 RFvsST 73178 87660453 87587276 no 212.287677321022 TraesCS1D01G059000 chr1D_38911228 chr1D 38911228 C C G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 38906988 38911554 4567 2 0.0437924239106635 RFvsST 73178 87660453 87587276 no 212.287677321022 TraesCS1D01G059200 chr1D_39291806 chr1D 39291806 C C T T 4 synonymous_variant LOW transcript non_Triplet 39288052 39291865 3814 2 0.0524383848977451 RFvsST 73178 87660453 87587276 no 447.034624404319 TraesCS1D01G059200 chr1D_39291623 chr1D 39291623 C C G G 4 missense_variant MODERATE transcript non_Triplet 39288052 39291865 3814 2 0.0524383848977451 RFvsST 73178 87660453 87587276 no 447.034624404319 TraesCS1D01G059300 chr1D_39651768 chr1D 39651768 T T A A 4 stop_gained HIGH transcript non_Triplet 39651547 39652614 1068 1 0.0936329588014981 RFvsST 73178 87660453 87587276 no 214.745111546135 TraesCS1D01G060000 chr1D_40166498 chr1D 40166498 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 40166352 40168706 2355 4 0.169851380042463 RFvsST 73178 87660453 87587276 no 368.970320161198 TraesCS1D01G060000 chr1D_40166919 chr1D 40166919 G G A A 4 synonymous_variant LOW transcript unique_Triplet 40166352 40168706 2355 4 0.169851380042463 RFvsST 73178 87660453 87587276 no 368.970320161198 TraesCS1D01G060000 chr1D_40168004 chr1D 40168004 T T A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 40166352 40168706 2355 4 0.169851380042463 RFvsST 73178 87660453 87587276 no 368.970320161198 TraesCS1D01G060000 chr1D_40168427 chr1D 40168427 G G A A 4 synonymous_variant LOW transcript unique_Triplet 40166352 40168706 2355 4 0.169851380042463 RFvsST 73178 87660453 87587276 no 368.970320161198 TraesCS1D01G124100 chr1D_127216592 chr1D 127216592 G G A A 4 missense_variant MODERATE transcript non_Triplet 127213987 127224521 10535 1 0.0094921689606075 RFvsST 72903993 261839615 188935623 no 89.3571730434488 TraesCS1D01G125100 chr1D_132207096 chr1D 132207096 A A G G 4 missense_variant MODERATE transcript unique_Triplet 132206538 132214187 7650 1 0.0130718954248366 RFvsST 72903993 261839615 188935623 no 225.631960059433 TraesCS1D01G129300 chr1D_143119876 chr1D 143119876 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 143121703 143122935 1233 1 0.08110300081103 RFvsST 72903993 261839615 188935623 no 45.9966250855127 TraesCS1D01G151500 chr1D_211304185 chr1D 211304185 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 211303071 211307919 4849 1 0.0206228088265622 RFvsST 72903993 261839615 188935623 no 236.201117437544 TraesCS1D01G155100 chr1D_217147079 chr1D 217147079 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 217142999 217146858 3860 1 0.0259067357512953 RFvsST 72903993 261839615 188935623 no 196.669500160929 TraesCS1D01G237500 chr1D_326908190 chr1D 326908190 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 326908496 326912285 3790 1 0.0263852242744063 RFvsST 288162254 409058292 120896039 no 4617.35799994133 TraesCS1D01G240300 chr1D_330091790 chr1D 330091790 G G T T 4 synonymous_variant LOW transcript unique_Triplet 330091430 330092384 955 1 0.104712041884817 RFvsST 288162254 409058292 120896039 no 37.7442685731735 TraesCS1D01G243700 chr1D_334226076 chr1D 334226076 T T C C 4 missense_variant MODERATE transcript unique_Triplet 334224959 334233390 8432 1 0.0118595825426945 RFvsST 288162254 409058292 120896039 no 551.637301735605 TraesCS1D01G244300 chr1D_335075883 chr1D 335075883 C C T T 4 missense_variant MODERATE transcript non_Triplet 335073983 335077413 3431 1 0.029146021568056 RFvsST 288162254 409058292 120896039 no 136.452689354554 TraesCS1D01G244400 chr1D_335266840 chr1D 335266840 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 335266865 335272801 5937 1 0.0168435236651507 RFvsST 288162254 409058292 120896039 no 265.559630879594 TraesCS1D01G245800 chr1D_337899075 chr1D 337899075 T C T C 3 missense_variant MODERATE transcript unique_Triplet 337894675 337899080 4406 1 0.0226963231956423 RFvsST 288162254 409058292 120896039 no 104.89778415002 TraesCS1D01G245900 chr1D_337903007 chr1D 337903007 A G A G 3 synonymous_variant LOW transcript unique_Triplet 337900514 337904547 4034 1 0.0247892910262766 RFvsST 288162254 409058292 120896039 no 131.860371068186 TraesCS1D01G246200 chr1D_338874030 chr1D 338874030 C C A A 4 missense_variant MODERATE transcript unique_Triplet 338872007 338876581 4575 1 0.0218579234972678 RFvsST 288162254 409058292 120896039 no 306.895239330571 TraesCS1D01G253700 chr1D_345704995 chr1D 345704995 A G A G 3 missense_variant MODERATE transcript unique_Triplet 345703337 345709038 5702 1 0.0175377060680463 RFvsST 288162254 409058292 120896039 no 1020.24514625936 TraesCS1D01G256600 chr1D_349183961 chr1D 349183961 C C T T 4 missense_variant MODERATE transcript unique_Triplet 349183608 349186725 3118 1 0.032071840923669 RFvsST 288162254 409058292 120896039 no 163.785023745838 TraesCS1D01G259000 chr1D_351440063 chr1D 351440063 C C T T 4 missense_variant MODERATE transcript unique_Triplet 351439804 351442348 2545 1 0.0392927308447937 RFvsST 288162254 409058292 120896039 no 194.682729939376 TraesCS1D01G262600 chr1D_356870140 chr1D 356870140 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 356868560 356872448 3889 1 0.0257135510413988 RFvsST 288162254 409058292 120896039 no 64.7597764088921 TraesCS1D01G273200 chr1D_367429041 chr1D 367429041 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 367429178 367431025 1848 1 0.0541125541125541 RFvsST 288162254 409058292 120896039 no 233.413334286753 TraesCS1D01G274600 chr1D_370214363 chr1D 370214363 C A C A 3 synonymous_variant LOW transcript unique_Triplet 370213797 370215158 1362 1 0.0734214390602056 RFvsST 288162254 409058292 120896039 no 315.359785820611 TraesCS1D01G343700 chr1D_432707296 chr1D 432707296 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 432702157 432704311 2155 1 0.0464037122969838 RFvsST 402338593 461138621 58800029 no No_match TraesCS1D01G343800 chr1D_432708228 chr1D 432708228 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 432707405 432714571 7167 2 0.0279056788056369 RFvsST 402338593 461138621 58800029 no 60.9871582600593 TraesCS1D01G343800 chr1D_432711433 chr1D 432711433 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 432707405 432714571 7167 2 0.0279056788056369 RFvsST 402338593 461138621 58800029 no 60.9871582600593 TraesCS1D01G344000 chr1D_432792118 chr1D 432792118 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 432791406 432796196 4791 4 0.0834898768524316 RFvsST 402338593 461138621 58800029 no 76.3760210304945 TraesCS1D01G344000 chr1D_432793376 chr1D 432793376 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 432791406 432796196 4791 4 0.0834898768524316 RFvsST 402338593 461138621 58800029 no 76.3760210304945 TraesCS1D01G344000 chr1D_432794518 chr1D 432794518 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 432791406 432796196 4791 4 0.0834898768524316 RFvsST 402338593 461138621 58800029 no 76.3760210304945 TraesCS1D01G344000 chr1D_432795777 chr1D 432795777 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 432791406 432796196 4791 4 0.0834898768524316 RFvsST 402338593 461138621 58800029 no 76.3760210304945 TraesCS1D01G344100 chr1D_432796411 chr1D 432796411 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 432797912 432801204 3293 1 0.0303674460977832 RFvsST 402338593 461138621 58800029 no No_match TraesCS1D01G344600 chr1D_433213048 chr1D 433213048 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 433208888 433212999 4112 5 0.1215953307393 RFvsST 402338593 461138621 58800029 no 137.69236282292 TraesCS1D01G344600 chr1D_433212657 chr1D 433212657 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 433208888 433212999 4112 5 0.1215953307393 RFvsST 402338593 461138621 58800029 no 137.69236282292 TraesCS1D01G344600 chr1D_433212969 chr1D 433212969 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 433208888 433212999 4112 5 0.1215953307393 RFvsST 402338593 461138621 58800029 no 137.69236282292 TraesCS1D01G344600 chr1D_433213049 chr1D 433213049 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 433208888 433212999 4112 5 0.1215953307393 RFvsST 402338593 461138621 58800029 no 137.69236282292 TraesCS1D01G344600 chr1D_433213085 chr1D 433213085 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 433208888 433212999 4112 5 0.1215953307393 RFvsST 402338593 461138621 58800029 no 137.69236282292 TraesCS1D01G345100 chr1D_433275529 chr1D 433275529 T T C C 4 synonymous_variant LOW transcript unique_Triplet 433274675 433280325 5651 2 0.0353919660237126 RFvsST 402338593 461138621 58800029 no 60.8012253860528 TraesCS1D01G345100 chr1D_433275530 chr1D 433275530 G G A A 4 missense_variant MODERATE transcript unique_Triplet 433274675 433280325 5651 2 0.0353919660237126 RFvsST 402338593 461138621 58800029 no 60.8012253860528 TraesCS1D01G345200 chr1D_433368382 chr1D 433368382 A A G G 4 synonymous_variant LOW transcript non_Triplet 433363739 433368831 5093 1 0.0196347928529354 RFvsST 402338593 461138621 58800029 no 22.361125332629 TraesCS1D01G345400 chr1D_433396474 chr1D 433396474 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 433394619 433396629 2011 1 0.0497265042267529 RFvsST 402338593 461138621 58800029 no 22.6737765645212 TraesCS1D01G345500 chr1D_433511861 chr1D 433511861 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 433511893 433512454 562 2 0.355871886120996 RFvsST 402338593 461138621 58800029 no 247.603473836275 TraesCS1D01G345500 chr1D_433511784 chr1D 433511784 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 433511893 433512454 562 2 0.355871886120996 RFvsST 402338593 461138621 58800029 no 247.603473836275 TraesCS1D01G345600 chr1D_433512727 chr1D 433512727 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 433516330 433519420 3091 1 0.0323519896473633 RFvsST 402338593 461138621 58800029 no 3.04670634345405 TraesCS1D01G346100 chr1D_433905045 chr1D 433905045 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 433899372 433905201 5830 3 0.0514579759862779 RFvsST 402338593 461138621 58800029 no 87.4087683173144 TraesCS1D01G346100 chr1D_433903981 chr1D 433903981 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 433899372 433905201 5830 3 0.0514579759862779 RFvsST 402338593 461138621 58800029 no 87.4087683173144 TraesCS1D01G346100 chr1D_433899405 chr1D 433899405 C C A A 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 433899372 433905201 5830 3 0.0514579759862779 RFvsST 402338593 461138621 58800029 no 87.4087683173144 TraesCS1D01G346200 chr1D_433911532 chr1D 433911532 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 433911554 433916532 4979 3 0.0602530628640289 RFvsST 402338593 461138621 58800029 no 149.099596778248 TraesCS1D01G346200 chr1D_433911527 chr1D 433911527 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 433911554 433916532 4979 3 0.0602530628640289 RFvsST 402338593 461138621 58800029 no 149.099596778248 TraesCS1D01G346200 chr1D_433916553 chr1D 433916553 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 433911554 433916532 4979 3 0.0602530628640289 RFvsST 402338593 461138621 58800029 no 149.099596778248 TraesCS1D01G348500 chr1D_435277806 chr1D 435277806 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 435273376 435274491 1116 2 0.17921146953405 RFvsST 402338593 461138621 58800029 no No_match TraesCS1D01G348500 chr1D_435277748 chr1D 435277748 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 435273376 435274491 1116 2 0.17921146953405 RFvsST 402338593 461138621 58800029 no No_match TraesCS1D01G349400 chr1D_435748770 chr1D 435748770 C C T T 4 missense_variant MODERATE transcript unique_Triplet 435748748 435749959 1212 1 0.0825082508250825 RFvsST 402338593 461138621 58800029 no 498.392076590035 TraesCS1D01G349700 chr1D_435802037 chr1D 435802037 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 435801484 435803058 1575 1 0.0634920634920635 RFvsST 402338593 461138621 58800029 no 229.136955777689 TraesCS1D01G350000 chr1D_436083503 chr1D 436083503 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 436082069 436083496 1428 2 0.140056022408964 RFvsST 402338593 461138621 58800029 no 132.009382896966 TraesCS1D01G350000 chr1D_436082795 chr1D 436082795 T T G G 4 missense_variant MODERATE transcript non_Triplet 436082069 436083496 1428 2 0.140056022408964 RFvsST 402338593 461138621 58800029 no 132.009382896966 TraesCS1D01G350100 chr1D_436086751 chr1D 436086751 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 436085806 436087242 1437 2 0.139178844815588 RFvsST 402338593 461138621 58800029 no 72.2374065688173 TraesCS1D01G350100 chr1D_436086691 chr1D 436086691 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 436085806 436087242 1437 2 0.139178844815588 RFvsST 402338593 461138621 58800029 no 72.2374065688173 TraesCS1D01G350200 chr1D_436097527 chr1D 436097527 G G A A 4 synonymous_variant LOW transcript non_Triplet 436097219 436098643 1425 2 0.140350877192982 RFvsST 402338593 461138621 58800029 no 210.382947432361 TraesCS1D01G350200 chr1D_436098614 chr1D 436098614 C C G G 4 synonymous_variant LOW transcript non_Triplet 436097219 436098643 1425 2 0.140350877192982 RFvsST 402338593 461138621 58800029 no 210.382947432361 TraesCS1D01G399900 chr1D_466386912 chr1D 466386912 G T G T 3 synonymous_variant LOW transcript non_Triplet 466386615 466388390 1776 5 0.281531531531532 RFvsST 441075875 495233119 54157245 no 218.673369164342 TraesCS1D01G399900 chr1D_466387239 chr1D 466387239 A G A G 3 synonymous_variant LOW transcript non_Triplet 466386615 466388390 1776 5 0.281531531531532 RFvsST 441075875 495233119 54157245 no 218.673369164342 TraesCS1D01G399900 chr1D_466386917 chr1D 466386917 C T C T 3 missense_variant MODERATE transcript non_Triplet 466386615 466388390 1776 5 0.281531531531532 RFvsST 441075875 495233119 54157245 no 218.673369164342 TraesCS1D01G399900 chr1D_466386831 chr1D 466386831 A T A T 3 synonymous_variant LOW transcript non_Triplet 466386615 466388390 1776 5 0.281531531531532 RFvsST 441075875 495233119 54157245 no 218.673369164342 TraesCS1D01G399900 chr1D_466386837 chr1D 466386837 T C T C 3 missense_variant MODERATE transcript non_Triplet 466386615 466388390 1776 5 0.281531531531532 RFvsST 441075875 495233119 54157245 no 218.673369164342 TraesCS1D01G412700 chr1D_473866537 chr1D 473866537 C C T T 4 synonymous_variant LOW transcript unique_Triplet 473862638 473867454 4817 1 0.0207598090097571 RFvsST 441075875 495233119 54157245 no 60.1319576045312 TraesCS1D01G412800 chr1D_473873217 chr1D 473873217 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 473872240 473872506 267 1 0.374531835205993 RFvsST 441075875 495233119 54157245 no 117.6068504 TraesCS1D01G413000 chr1D_473961245 chr1D 473961245 C C T T 4 missense_variant MODERATE transcript non_Triplet 473961230 473961496 267 1 0.374531835205993 RFvsST 441075875 495233119 54157245 no 57.8957041788992 TraesCS1D01G413100 chr1D_473961998 chr1D 473961998 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 473966061 473966327 267 1 0.374531835205993 RFvsST 441075875 495233119 54157245 no 48.7072647361092 TraesCS1D01G413200 chr1D_473987368 chr1D 473987368 C C T T 4 missense_variant MODERATE transcript non_Triplet 473987361 473987627 267 2 0.749063670411985 RFvsST 441075875 495233119 54157245 no 37.6789658027277 TraesCS1D01G413200 chr1D_473987408 chr1D 473987408 G G A A 4 synonymous_variant LOW transcript non_Triplet 473987361 473987627 267 2 0.749063670411985 RFvsST 441075875 495233119 54157245 no 37.6789658027277 TraesCS1D01G413300 chr1D_473992229 chr1D 473992229 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 473992300 473992566 267 4 1.49812734082397 RFvsST 441075875 495233119 54157245 no 66.9754836123695 TraesCS1D01G413300 chr1D_473988142 chr1D 473988142 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 473992300 473992566 267 4 1.49812734082397 RFvsST 441075875 495233119 54157245 no 66.9754836123695 TraesCS1D01G413300 chr1D_473988245 chr1D 473988245 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 473992300 473992566 267 4 1.49812734082397 RFvsST 441075875 495233119 54157245 no 66.9754836123695 TraesCS1D01G413300 chr1D_473988078 chr1D 473988078 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 473992300 473992566 267 4 1.49812734082397 RFvsST 441075875 495233119 54157245 no 66.9754836123695 TraesCS1D01G413400 chr1D_473998165 chr1D 473998165 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 473997063 473997305 243 2 0.823045267489712 RFvsST 441075875 495233119 54157245 no 71.0556974594812 TraesCS1D01G413400 chr1D_473997209 chr1D 473997209 G G A A 4 synonymous_variant LOW transcript non_Triplet 473997063 473997305 243 2 0.823045267489712 RFvsST 441075875 495233119 54157245 no 71.0556974594812 TraesCS1D01G413700 chr1D_474056864 chr1D 474056864 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 474052857 474056687 3831 2 0.0522056904202558 RFvsST 441075875 495233119 54157245 no 46.2916102264069 TraesCS1D01G413700 chr1D_474056044 chr1D 474056044 C C T T 4 synonymous_variant LOW transcript non_Triplet 474052857 474056687 3831 2 0.0522056904202558 RFvsST 441075875 495233119 54157245 no 46.2916102264069 TraesCS1D01G414600 chr1D_474376746 chr1D 474376746 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 474375066 474376643 1578 2 0.126742712294043 RFvsST 441075875 495233119 54157245 no 111.926708341354 TraesCS1D01G414600 chr1D_474376750 chr1D 474376750 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 474375066 474376643 1578 2 0.126742712294043 RFvsST 441075875 495233119 54157245 no 111.926708341354 TraesCS1D01G416200 chr1D_475197469 chr1D 475197469 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 475194105 475195469 1365 4 0.293040293040293 RFvsST 441075875 495233119 54157245 no 337.213587138779 TraesCS1D01G416200 chr1D_475193652 chr1D 475193652 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 475194105 475195469 1365 4 0.293040293040293 RFvsST 441075875 495233119 54157245 no 337.213587138779 TraesCS1D01G416200 chr1D_475194144 chr1D 475194144 G G C C 4 missense_variant MODERATE transcript non_Triplet 475194105 475195469 1365 4 0.293040293040293 RFvsST 441075875 495233119 54157245 no 337.213587138779 TraesCS1D01G416200 chr1D_475197236 chr1D 475197236 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 475194105 475195469 1365 4 0.293040293040293 RFvsST 441075875 495233119 54157245 no 337.213587138779 TraesCS1D01G417000 chr1D_475503706 chr1D 475503706 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 475502584 475503843 1260 3 0.238095238095238 RFvsST 441075875 495233119 54157245 no 278.664311019665 TraesCS1D01G417000 chr1D_475502699 chr1D 475502699 T T G G 4 synonymous_variant LOW transcript unique_Triplet 475502584 475503843 1260 3 0.238095238095238 RFvsST 441075875 495233119 54157245 no 278.664311019665 TraesCS1D01G417000 chr1D_475502691 chr1D 475502691 C C A A 4 missense_variant MODERATE transcript unique_Triplet 475502584 475503843 1260 3 0.238095238095238 RFvsST 441075875 495233119 54157245 no 278.664311019665 TraesCS1D01G417100 chr1D_475519293 chr1D 475519293 C C T T 4 synonymous_variant LOW transcript unique_Triplet 475516777 475520408 3632 2 0.0550660792951542 RFvsST 441075875 495233119 54157245 no 24.4158048765554 TraesCS1D01G417100 chr1D_475519643 chr1D 475519643 G G A A 4 missense_variant MODERATE transcript unique_Triplet 475516777 475520408 3632 2 0.0550660792951542 RFvsST 441075875 495233119 54157245 no 24.4158048765554 TraesCS1D01G417300 chr1D_475605708 chr1D 475605708 T T C C 4 synonymous_variant LOW transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417300 chr1D_475606089 chr1D 475606089 G G A A 4 synonymous_variant LOW transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417300 chr1D_475605729 chr1D 475605729 A A T T 4 synonymous_variant LOW transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417300 chr1D_475604660 chr1D 475604660 T T A A 4 missense_variant MODERATE transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417300 chr1D_475605732 chr1D 475605732 A A G G 4 synonymous_variant LOW transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417300 chr1D_475606364 chr1D 475606364 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 475603722 475606290 2569 6 0.233553912028026 RFvsST 441075875 495233119 54157245 no 17.8206253837064 TraesCS1D01G417500 chr1D_475723354 chr1D 475723354 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 475720331 475721153 823 1 0.121506682867558 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G417600 chr1D_475724570 chr1D 475724570 T T G G 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475731441 chr1D 475731441 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475730689 chr1D 475730689 T T C C 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475731412 chr1D 475731412 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475726642 chr1D 475726642 C C A A 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475731348 chr1D 475731348 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475730483 chr1D 475730483 T T G G 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475730484 chr1D 475730484 A A C C 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475728564 chr1D 475728564 T T A A 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475730687 chr1D 475730687 G G A A 4 missense_variant MODERATE transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417600 chr1D_475731701 chr1D 475731701 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 475723391 475731263 7873 11 0.139718023625048 RFvsST 441075875 495233119 54157245 no 721.31853215329 TraesCS1D01G417900 chr1D_475817427 chr1D 475817427 G G A A 4 synonymous_variant LOW transcript unique_Triplet 475815936 475817844 1909 4 0.209533787323206 RFvsST 441075875 495233119 54157245 no 145.705902278381 TraesCS1D01G417900 chr1D_475817200 chr1D 475817200 A A C C 4 missense_variant MODERATE transcript unique_Triplet 475815936 475817844 1909 4 0.209533787323206 RFvsST 441075875 495233119 54157245 no 145.705902278381 TraesCS1D01G417900 chr1D_475817577 chr1D 475817577 T T C C 4 synonymous_variant LOW transcript unique_Triplet 475815936 475817844 1909 4 0.209533787323206 RFvsST 441075875 495233119 54157245 no 145.705902278381 TraesCS1D01G417900 chr1D_475817178 chr1D 475817178 G G C C 4 synonymous_variant LOW transcript unique_Triplet 475815936 475817844 1909 4 0.209533787323206 RFvsST 441075875 495233119 54157245 no 145.705902278381 TraesCS1D01G418500 chr1D_475924190 chr1D 475924190 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 475918713 475919441 729 1 0.137174211248285 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G418700 chr1D_475926055 chr1D 475926055 C C A A 4 missense_variant MODERATE transcript unique_Triplet 475924321 475926155 1835 2 0.108991825613079 RFvsST 441075875 495233119 54157245 no 219.930711545686 TraesCS1D01G418700 chr1D_475925975 chr1D 475925975 C C T T 4 missense_variant MODERATE transcript unique_Triplet 475924321 475926155 1835 2 0.108991825613079 RFvsST 441075875 495233119 54157245 no 219.930711545686 TraesCS1D01G419400 chr1D_476442984 chr1D 476442984 G G A A 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 476437019 476443028 6010 5 0.0831946755407654 RFvsST 441075875 495233119 54157245 no 134.878064287249 TraesCS1D01G419400 chr1D_476440122 chr1D 476440122 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 476437019 476443028 6010 5 0.0831946755407654 RFvsST 441075875 495233119 54157245 no 134.878064287249 TraesCS1D01G419400 chr1D_476438284 chr1D 476438284 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 476437019 476443028 6010 5 0.0831946755407654 RFvsST 441075875 495233119 54157245 no 134.878064287249 TraesCS1D01G419400 chr1D_476437383 chr1D 476437383 C C A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 476437019 476443028 6010 5 0.0831946755407654 RFvsST 441075875 495233119 54157245 no 134.878064287249 TraesCS1D01G419400 chr1D_476440348 chr1D 476440348 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 476437019 476443028 6010 5 0.0831946755407654 RFvsST 441075875 495233119 54157245 no 134.878064287249 TraesCS1D01G419500 chr1D_476559967 chr1D 476559967 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 476558083 476559871 1789 1 0.0558971492453885 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G419800 chr1D_476583866 chr1D 476583866 C C G G 4 synonymous_variant LOW transcript unique_Triplet 476580902 476584391 3490 1 0.0286532951289398 RFvsST 441075875 495233119 54157245 no 1352.46181058838 TraesCS1D01G420500 chr1D_476904778 chr1D 476904778 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 476904924 476909172 4249 2 0.0470698987997176 RFvsST 441075875 495233119 54157245 no 733.071417459436 TraesCS1D01G420500 chr1D_476904766 chr1D 476904766 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 476904924 476909172 4249 2 0.0470698987997176 RFvsST 441075875 495233119 54157245 no 733.071417459436 TraesCS1D01G420900 chr1D_477185505 chr1D 477185505 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 477189031 477190590 1560 3 0.192307692307692 RFvsST 441075875 495233119 54157245 no 15.639251390038 TraesCS1D01G420900 chr1D_477185603 chr1D 477185603 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 477189031 477190590 1560 3 0.192307692307692 RFvsST 441075875 495233119 54157245 no 15.639251390038 TraesCS1D01G420900 chr1D_477185584 chr1D 477185584 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 477189031 477190590 1560 3 0.192307692307692 RFvsST 441075875 495233119 54157245 no 15.639251390038 TraesCS1D01G421100 chr1D_477213296 chr1D 477213296 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 477213371 477219305 5935 1 0.016849199663016 RFvsST 441075875 495233119 54157245 no 78.9135917351395 TraesCS1D01G426400 chr1D_479594351 chr1D 479594351 G G T T 4 synonymous_variant LOW transcript unique_Triplet 479591836 479595139 3304 1 0.0302663438256659 RFvsST 441075875 495233119 54157245 no 997.092650581638 TraesCS1D01G428900 chr1D_480888319 chr1D 480888319 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 480888568 480893741 5174 1 0.0193274062620796 RFvsST 441075875 495233119 54157245 no 457.118198203917 TraesCS1D01G430600 chr1D_481415508 chr1D 481415508 G G T T 4 missense_variant MODERATE transcript unique_Triplet 481413998 481419959 5962 1 0.0167728950016773 RFvsST 441075875 495233119 54157245 no 174.418637857054 TraesCS1D01G432600 chr1D_482245789 chr1D 482245789 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 482242398 482243459 1062 3 0.282485875706215 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G432600 chr1D_482245623 chr1D 482245623 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 482242398 482243459 1062 3 0.282485875706215 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G432600 chr1D_482245603 chr1D 482245603 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 482242398 482243459 1062 3 0.282485875706215 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G436800 chr1D_484390604 chr1D 484390604 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484395690 chr1D 484395690 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484390540 chr1D 484390540 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484395579 chr1D 484395579 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484395691 chr1D 484395691 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484390517 chr1D 484390517 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484390661 chr1D 484390661 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G436800 chr1D_484395903 chr1D 484395903 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 484390490 484396298 5809 8 0.137717335169564 RFvsST 441075875 495233119 54157245 no 137.246210115601 TraesCS1D01G437700 chr1D_485056244 chr1D 485056244 T C T C 3 synonymous_variant LOW transcript unique_Triplet 485053754 485056524 2771 1 0.0360880548538434 RFvsST 441075875 495233119 54157245 no 10.2742616981993 TraesCS1D01G437900 chr1D_485104839 chr1D 485104839 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 485101888 485103081 1194 1 0.0837520938023451 RFvsST 441075875 495233119 54157245 no 17.8729279977058 TraesCS1D01G438000 chr1D_485113705 chr1D 485113705 G A G A 3 synonymous_variant LOW transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485116467 chr1D 485116467 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485116463 chr1D 485116463 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485106032 chr1D 485106032 T C T C 3 synonymous_variant LOW transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485105818 chr1D 485105818 T C T C 3 synonymous_variant LOW transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485105070 chr1D 485105070 C T C T 3 synonymous_variant LOW transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438000 chr1D_485107541 chr1D 485107541 C T C T 3 synonymous_variant LOW transcript unique_Triplet 485104992 485115526 10535 7 0.0664451827242525 RFvsST 441075875 495233119 54157245 no 103.071156954262 TraesCS1D01G438900 chr1D_485506597 chr1D 485506597 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 485503274 485503621 348 3 0.862068965517241 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G438900 chr1D_485506539 chr1D 485506539 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 485503274 485503621 348 3 0.862068965517241 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G438900 chr1D_485506377 chr1D 485506377 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 485503274 485503621 348 3 0.862068965517241 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G439000 chr1D_485508382 chr1D 485508382 A T A T 3 missense_variant MODERATE transcript non_Triplet 485506604 485510177 3574 1 0.0279798545047566 RFvsST 441075875 495233119 54157245 no 47.1170080511053 TraesCS1D01G439600 chr1D_485564769 chr1D 485564769 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 485557580 485563447 5868 4 0.0681663258350375 RFvsST 441075875 495233119 54157245 no 162.336068036492 TraesCS1D01G439600 chr1D_485559586 chr1D 485559586 G A G A 3 missense_variant MODERATE transcript unique_Triplet 485557580 485563447 5868 4 0.0681663258350375 RFvsST 441075875 495233119 54157245 no 162.336068036492 TraesCS1D01G439600 chr1D_485563418 chr1D 485563418 T C T C 3 synonymous_variant LOW transcript unique_Triplet 485557580 485563447 5868 4 0.0681663258350375 RFvsST 441075875 495233119 54157245 no 162.336068036492 TraesCS1D01G439600 chr1D_485557679 chr1D 485557679 G T G T 3 synonymous_variant LOW transcript unique_Triplet 485557580 485563447 5868 4 0.0681663258350375 RFvsST 441075875 495233119 54157245 no 162.336068036492 TraesCS1D01G440500 chr1D_486015104 chr1D 486015104 G A G A 3 missense_variant MODERATE transcript unique_Triplet 486014095 486015130 1036 5 0.482625482625483 RFvsST 441075875 495233119 54157245 no 71.9790959533299 TraesCS1D01G440500 chr1D_486015106 chr1D 486015106 T C T C 3 synonymous_variant LOW transcript unique_Triplet 486014095 486015130 1036 5 0.482625482625483 RFvsST 441075875 495233119 54157245 no 71.9790959533299 TraesCS1D01G440500 chr1D_486014160 chr1D 486014160 C G C G 3 synonymous_variant LOW transcript unique_Triplet 486014095 486015130 1036 5 0.482625482625483 RFvsST 441075875 495233119 54157245 no 71.9790959533299 TraesCS1D01G440500 chr1D_486014779 chr1D 486014779 C T C T 3 synonymous_variant LOW transcript unique_Triplet 486014095 486015130 1036 5 0.482625482625483 RFvsST 441075875 495233119 54157245 no 71.9790959533299 TraesCS1D01G440500 chr1D_486014196 chr1D 486014196 C G C G 3 synonymous_variant LOW transcript unique_Triplet 486014095 486015130 1036 5 0.482625482625483 RFvsST 441075875 495233119 54157245 no 71.9790959533299 TraesCS1D01G440600 chr1D_486068660 chr1D 486068660 T C T C 3 missense_variant MODERATE transcript unique_Triplet 486066830 486070801 3972 2 0.0503524672708963 RFvsST 441075875 495233119 54157245 no 84.9794969071288 TraesCS1D01G440600 chr1D_486068631 chr1D 486068631 A G A G 3 synonymous_variant LOW transcript unique_Triplet 486066830 486070801 3972 2 0.0503524672708963 RFvsST 441075875 495233119 54157245 no 84.9794969071288 TraesCS1D01G440900 chr1D_486156161 chr1D 486156161 G A G A 3 synonymous_variant LOW transcript unique_Triplet 486155468 486157967 2500 5 0.2 RFvsST 441075875 495233119 54157245 no 392.468115436758 TraesCS1D01G440900 chr1D_486155872 chr1D 486155872 A G A G 3 missense_variant MODERATE transcript unique_Triplet 486155468 486157967 2500 5 0.2 RFvsST 441075875 495233119 54157245 no 392.468115436758 TraesCS1D01G440900 chr1D_486155509 chr1D 486155509 A C A C 3 synonymous_variant LOW transcript unique_Triplet 486155468 486157967 2500 5 0.2 RFvsST 441075875 495233119 54157245 no 392.468115436758 TraesCS1D01G440900 chr1D_486156524 chr1D 486156524 T C T C 3 synonymous_variant LOW transcript unique_Triplet 486155468 486157967 2500 5 0.2 RFvsST 441075875 495233119 54157245 no 392.468115436758 TraesCS1D01G440900 chr1D_486155870 chr1D 486155870 C T C T 3 synonymous_variant LOW transcript unique_Triplet 486155468 486157967 2500 5 0.2 RFvsST 441075875 495233119 54157245 no 392.468115436758 TraesCS1D01G442400 chr1D_486879185 chr1D 486879185 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486876302 486879051 2750 3 0.109090909090909 RFvsST 441075875 495233119 54157245 no 15.1210290292892 TraesCS1D01G442400 chr1D_486876279 chr1D 486876279 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 486876302 486879051 2750 3 0.109090909090909 RFvsST 441075875 495233119 54157245 no 15.1210290292892 TraesCS1D01G442400 chr1D_486879248 chr1D 486879248 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486876302 486879051 2750 3 0.109090909090909 RFvsST 441075875 495233119 54157245 no 15.1210290292892 TraesCS1D01G443000 chr1D_487169307 chr1D 487169307 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487168968 chr1D 487168968 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487168883 chr1D 487168883 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487171886 chr1D 487171886 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487169251 chr1D 487169251 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487169305 chr1D 487169305 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487168829 chr1D 487168829 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487169427 chr1D 487169427 G C G C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487171989 chr1D 487171989 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443000 chr1D_487169133 chr1D 487169133 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 487168521 487169408 888 10 1.12612612612613 RFvsST 441075875 495233119 54157245 no 78.0194653154592 TraesCS1D01G443100 chr1D_487177224 chr1D 487177224 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 487171997 487175793 3797 3 0.0790097445351593 RFvsST 441075875 495233119 54157245 no 96.4195497665832 TraesCS1D01G443100 chr1D_487177030 chr1D 487177030 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 487171997 487175793 3797 3 0.0790097445351593 RFvsST 441075875 495233119 54157245 no 96.4195497665832 TraesCS1D01G443100 chr1D_487177126 chr1D 487177126 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 487171997 487175793 3797 3 0.0790097445351593 RFvsST 441075875 495233119 54157245 no 96.4195497665832 TraesCS1D01G444100 chr1D_487566461 chr1D 487566461 A G A G 3 synonymous_variant LOW transcript unique_Triplet 487566053 487567830 1778 2 0.112485939257593 RFvsST 441075875 495233119 54157245 no 153.457029160755 TraesCS1D01G444100 chr1D_487567666 chr1D 487567666 T G T G 3 synonymous_variant LOW transcript unique_Triplet 487566053 487567830 1778 2 0.112485939257593 RFvsST 441075875 495233119 54157245 no 153.457029160755 TraesCS1D01G444900 chr1D_487894097 chr1D 487894097 A G A G 3 synonymous_variant LOW transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G444900 chr1D_487897809 chr1D 487897809 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G444900 chr1D_487894996 chr1D 487894996 G A G A 3 synonymous_variant LOW transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G444900 chr1D_487895606 chr1D 487895606 A T A T 3 synonymous_variant LOW transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G444900 chr1D_487895651 chr1D 487895651 C A C A 3 missense_variant MODERATE transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G444900 chr1D_487894019 chr1D 487894019 A C A C 3 synonymous_variant LOW transcript non_Triplet 487893962 487897360 3399 6 0.176522506619594 RFvsST 441075875 495233119 54157245 no 299.753432194745 TraesCS1D01G445200 chr1D_487952328 chr1D 487952328 T G T G 3 missense_variant MODERATE transcript unique_Triplet 487950655 487955348 4694 4 0.0852151682999574 RFvsST 441075875 495233119 54157245 no 116.962042514979 TraesCS1D01G445200 chr1D_487952294 chr1D 487952294 G A G A 3 missense_variant MODERATE transcript unique_Triplet 487950655 487955348 4694 4 0.0852151682999574 RFvsST 441075875 495233119 54157245 no 116.962042514979 TraesCS1D01G445200 chr1D_487951122 chr1D 487951122 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 487950655 487955348 4694 4 0.0852151682999574 RFvsST 441075875 495233119 54157245 no 116.962042514979 TraesCS1D01G445200 chr1D_487953170 chr1D 487953170 C T C T 3 missense_variant MODERATE transcript unique_Triplet 487950655 487955348 4694 4 0.0852151682999574 RFvsST 441075875 495233119 54157245 no 116.962042514979 TraesCS1D01G445300 chr1D_487956613 chr1D 487956613 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445300 chr1D_487956662 chr1D 487956662 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445300 chr1D_487957529 chr1D 487957529 A G A G 3 synonymous_variant LOW transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445300 chr1D_487958867 chr1D 487958867 T C T C 3 synonymous_variant LOW transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445300 chr1D_487956685 chr1D 487956685 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445300 chr1D_487957511 chr1D 487957511 A G A G 3 synonymous_variant LOW transcript unique_Triplet 487956596 487960430 3835 6 0.15645371577575 RFvsST 441075875 495233119 54157245 no 219.177797100821 TraesCS1D01G445700 chr1D_488573093 chr1D 488573093 T A T A 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488576481 chr1D 488576481 G T G T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488575468 chr1D 488575468 A T A T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488572586 chr1D 488572586 A T A T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488577323 chr1D 488577323 T G T G 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488573916 chr1D 488573916 G A G A 3 missense_variant MODERATE transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488573709 chr1D 488573709 C T C T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488572925 chr1D 488572925 G T G T 3 missense_variant MODERATE transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488575315 chr1D 488575315 T G T G 3 missense_variant MODERATE transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488576896 chr1D 488576896 A T A T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488575666 chr1D 488575666 T C T C 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488577643 chr1D 488577643 A G A G 3 missense_variant MODERATE transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488576899 chr1D 488576899 T C T C 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488573114 chr1D 488573114 G A G A 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488574362 chr1D 488574362 G A G A 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488577329 chr1D 488577329 G T G T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488577473 chr1D 488577473 G T G T 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488575675 chr1D 488575675 G A G A 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G445700 chr1D_488573902 chr1D 488573902 G C G C 3 synonymous_variant LOW transcript unique_Triplet 488567907 488577878 9972 19 0.190533493782591 RFvsST 441075875 495233119 54157245 no 332.16062817613 TraesCS1D01G446400 chr1D_488971889 chr1D 488971889 A C A C 3 synonymous_variant LOW transcript non_Triplet 488971302 488977162 5861 1 0.017061934823409 RFvsST 441075875 495233119 54157245 no 402.808274083103 TraesCS1D01G446500 chr1D_489091744 chr1D 489091744 G A G A 3 synonymous_variant LOW transcript non_Triplet 489091376 489092116 741 1 0.134952766531714 RFvsST 441075875 495233119 54157245 no 48.7856293640606 TraesCS1D01G446900 chr1D_489540133 chr1D 489540133 G T G T 3 synonymous_variant LOW transcript unique_Triplet 489535492 489541483 5992 3 0.0500667556742323 RFvsST 441075875 495233119 54157245 no 252.834645189435 TraesCS1D01G446900 chr1D_489538541 chr1D 489538541 G T G T 3 synonymous_variant LOW transcript unique_Triplet 489535492 489541483 5992 3 0.0500667556742323 RFvsST 441075875 495233119 54157245 no 252.834645189435 TraesCS1D01G446900 chr1D_489538722 chr1D 489538722 T G T G 3 synonymous_variant LOW transcript unique_Triplet 489535492 489541483 5992 3 0.0500667556742323 RFvsST 441075875 495233119 54157245 no 252.834645189435 TraesCS1D01G448300 chr1D_490599036 chr1D 490599036 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 490599040 490599868 829 3 0.361881785283474 RFvsST 441075875 495233119 54157245 no 122.462197530839 TraesCS1D01G448300 chr1D_490599392 chr1D 490599392 A G A G 3 missense_variant MODERATE transcript unique_Triplet 490599040 490599868 829 3 0.361881785283474 RFvsST 441075875 495233119 54157245 no 122.462197530839 TraesCS1D01G448300 chr1D_490598896 chr1D 490598896 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 490599040 490599868 829 3 0.361881785283474 RFvsST 441075875 495233119 54157245 no 122.462197530839 TraesCS1D01G448600 chr1D_490926744 chr1D 490926744 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 490929696 490932379 2684 1 0.03725782414307 RFvsST 441075875 495233119 54157245 no 187.173983967978 TraesCS1D01G448700 chr1D_491039194 chr1D 491039194 T C T C 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039335 chr1D 491039335 C T C T 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491030354 chr1D 491030354 A G A G 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491034498 chr1D 491034498 C T C T 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491038795 chr1D 491038795 G A G A 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491032916 chr1D 491032916 G T G T 3 missense_variant MODERATE transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491030180 chr1D 491030180 C A C A 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491033767 chr1D 491033767 G A G A 3 missense_variant MODERATE transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039422 chr1D 491039422 T C T C 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491037225 chr1D 491037225 G A G A 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039171 chr1D 491039171 G C G C 3 missense_variant MODERATE transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039343 chr1D 491039343 G C G C 3 missense_variant MODERATE transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039581 chr1D 491039581 A G A G 3 synonymous_variant LOW transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448700 chr1D_491039500 chr1D 491039500 C G C G 3 missense_variant MODERATE transcript unique_Triplet 491029302 491039980 10679 14 0.131098417454818 RFvsST 441075875 495233119 54157245 no 345.147339237564 TraesCS1D01G448800 chr1D_491041416 chr1D 491041416 T C T C 3 synonymous_variant LOW transcript unique_Triplet 491040912 491041587 676 1 0.14792899408284 RFvsST 441075875 495233119 54157245 no 42.3593379022458 TraesCS1D01G448900 chr1D_491044879 chr1D 491044879 T G T G 3 missense_variant MODERATE transcript unique_Triplet 491042370 491045054 2685 4 0.148975791433892 RFvsST 441075875 495233119 54157245 no 96.2658716604502 TraesCS1D01G448900 chr1D_491041692 chr1D 491041692 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 491042370 491045054 2685 4 0.148975791433892 RFvsST 441075875 495233119 54157245 no 96.2658716604502 TraesCS1D01G448900 chr1D_491043140 chr1D 491043140 A G A G 3 missense_variant MODERATE transcript unique_Triplet 491042370 491045054 2685 4 0.148975791433892 RFvsST 441075875 495233119 54157245 no 96.2658716604502 TraesCS1D01G448900 chr1D_491044682 chr1D 491044682 A G A G 3 synonymous_variant LOW transcript unique_Triplet 491042370 491045054 2685 4 0.148975791433892 RFvsST 441075875 495233119 54157245 no 96.2658716604502 TraesCS1D01G449000 chr1D_491050131 chr1D 491050131 C G C G 3 missense_variant MODERATE transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491051367 chr1D 491051367 A G A G 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491050198 chr1D 491050198 T C T C 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491051285 chr1D 491051285 A G A G 3 missense_variant MODERATE transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491050132 chr1D 491050132 T C T C 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491045408 chr1D 491045408 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491051602 chr1D 491051602 C T C T 3 missense_variant MODERATE transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491051418 chr1D 491051418 A G A G 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491045398 chr1D 491045398 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491050702 chr1D 491050702 A G A G 3 missense_variant MODERATE transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491045112 chr1D 491045112 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491049923 chr1D 491049923 A T A T 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491045084 chr1D 491045084 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491049397 chr1D 491049397 T C T C 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449000 chr1D_491049750 chr1D 491049750 T A T A 3 synonymous_variant LOW transcript non_Triplet 491049377 491051828 2452 15 0.611745513866232 RFvsST 441075875 495233119 54157245 no 282.933452136629 TraesCS1D01G449200 chr1D_491633692 chr1D 491633692 A G A G 3 missense_variant MODERATE transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449200 chr1D_491634352 chr1D 491634352 C T C T 3 synonymous_variant LOW transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449200 chr1D_491633691 chr1D 491633691 C T C T 3 synonymous_variant LOW transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449200 chr1D_491636326 chr1D 491636326 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449200 chr1D_491633937 chr1D 491633937 A G A G 3 synonymous_variant LOW transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449200 chr1D_491636334 chr1D 491636334 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 491632411 491636270 3860 6 0.155440414507772 RFvsST 441075875 495233119 54157245 no 21.1231046740555 TraesCS1D01G449600 chr1D_491795818 chr1D 491795818 G C G C 3 synonymous_variant LOW transcript unique_Triplet 491794610 491796022 1413 4 0.283085633404105 RFvsST 441075875 495233119 54157245 no 102.847284711148 TraesCS1D01G449600 chr1D_491795513 chr1D 491795513 A G A G,T 3 missense_variant MODERATE transcript unique_Triplet 491794610 491796022 1413 4 0.283085633404105 RFvsST 441075875 495233119 54157245 no 102.847284711148 TraesCS1D01G449600 chr1D_491795389 chr1D 491795389 C G C G 3 synonymous_variant LOW transcript unique_Triplet 491794610 491796022 1413 4 0.283085633404105 RFvsST 441075875 495233119 54157245 no 102.847284711148 TraesCS1D01G449600 chr1D_491795548 chr1D 491795548 G C G C 3 synonymous_variant LOW transcript unique_Triplet 491794610 491796022 1413 4 0.283085633404105 RFvsST 441075875 495233119 54157245 no 102.847284711148 TraesCS1D01G449700 chr1D_491806066 chr1D 491806066 T C T C 3 synonymous_variant LOW transcript non_Triplet 491803945 491806858 2914 1 0.0343170899107756 RFvsST 441075875 495233119 54157245 no 56.5644922007641 TraesCS1D01G450100 chr1D_492533972 chr1D 492533972 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 492534242 492538011 3770 2 0.0530503978779841 RFvsST 441075875 495233119 54157245 no 627.008336717642 TraesCS1D01G450100 chr1D_492534009 chr1D 492534009 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 492534242 492538011 3770 2 0.0530503978779841 RFvsST 441075875 495233119 54157245 no 627.008336717642 TraesCS1D01G450200 chr1D_492611715 chr1D 492611715 C T C T 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492611421 chr1D 492611421 A T A T 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492610021 chr1D 492610021 T C T C 3 missense_variant MODERATE transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492610898 chr1D 492610898 G A G A 3 missense_variant MODERATE transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492611112 chr1D 492611112 A G A G 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492611706 chr1D 492611706 T A T A 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492612794 chr1D 492612794 A G A G 3 missense_variant MODERATE transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492613994 chr1D 492613994 T C T C 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492613262 chr1D 492613262 C A C A 3 synonymous_variant LOW transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450200 chr1D_492609796 chr1D 492609796 A C A C 3 missense_variant MODERATE transcript unique_Triplet 492606158 492620025 13868 10 0.0721084511104702 RFvsST 441075875 495233119 54157245 no 401.667566727927 TraesCS1D01G450300 chr1D_492641728 chr1D 492641728 C T C T 3 synonymous_variant LOW transcript unique_Triplet 492639889 492643598 3710 3 0.0808625336927224 RFvsST 441075875 495233119 54157245 no 274.774157442022 TraesCS1D01G450300 chr1D_492641722 chr1D 492641722 C A C A 3 synonymous_variant LOW transcript unique_Triplet 492639889 492643598 3710 3 0.0808625336927224 RFvsST 441075875 495233119 54157245 no 274.774157442022 TraesCS1D01G450300 chr1D_492643550 chr1D 492643550 T C T C 3 missense_variant MODERATE transcript unique_Triplet 492639889 492643598 3710 3 0.0808625336927224 RFvsST 441075875 495233119 54157245 no 274.774157442022 TraesCS1D01G450400 chr1D_492646643 chr1D 492646643 C G C G 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646712 chr1D 492646712 C T C T 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646655 chr1D 492646655 C G C G 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646462 chr1D 492646462 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646694 chr1D 492646694 C T C T 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492648834 chr1D 492648834 C G C G 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492647689 chr1D 492647689 G A G A 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646390 chr1D 492646390 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646297 chr1D 492646297 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492647588 chr1D 492647588 C A C A 3 synonymous_variant LOW transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646322 chr1D 492646322 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450400 chr1D_492646483 chr1D 492646483 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 492646101 492650481 4381 12 0.273910066194933 RFvsST 441075875 495233119 54157245 no 206.236565467328 TraesCS1D01G450600 chr1D_492892200 chr1D 492892200 T A T A 3 synonymous_variant LOW transcript non_Triplet 492891319 492895638 4320 2 0.0462962962962963 RFvsST 441075875 495233119 54157245 no 259.972004047243 TraesCS1D01G450600 chr1D_492896183 chr1D 492896183 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 492891319 492895638 4320 2 0.0462962962962963 RFvsST 441075875 495233119 54157245 no 259.972004047243 TraesCS1D01G451200 chr1D_493487259 chr1D 493487259 T C T C 3 missense_variant MODERATE transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487026 chr1D 493487026 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487518 chr1D 493487518 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487389 chr1D 493487389 A G A G 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487452 chr1D 493487452 C T C T 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493485579 chr1D 493485579 T C T C 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487470 chr1D 493487470 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487020 chr1D 493487020 C T C T 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493486960 chr1D 493486960 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493486802 chr1D 493486802 G A G A 3 missense_variant MODERATE transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493487074 chr1D 493487074 T C T C 3 synonymous_variant LOW transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493486791 chr1D 493486791 G T G T 3 missense_variant MODERATE transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451200 chr1D_493485553 chr1D 493485553 C T C T 3 missense_variant MODERATE transcript unique_Triplet 493484553 493488588 4036 13 0.322101090188305 RFvsST 441075875 495233119 54157245 no 446.484667666738 TraesCS1D01G451300 chr1D_493605325 chr1D 493605325 T C T C 3 synonymous_variant LOW transcript unique_Triplet 493603142 493607834 4693 2 0.0426166631152781 RFvsST 441075875 495233119 54157245 no 75.1192229022724 TraesCS1D01G451300 chr1D_493605277 chr1D 493605277 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493603142 493607834 4693 2 0.0426166631152781 RFvsST 441075875 495233119 54157245 no 75.1192229022724 TraesCS1D01G451800 chr1D_493710719 chr1D 493710719 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493710714 493712430 1717 1 0.05824111822947 RFvsST 441075875 495233119 54157245 no No_match TraesCS1D01G451900 chr1D_493765032 chr1D 493765032 C T C T 3 synonymous_variant LOW transcript unique_Triplet 493764879 493769209 4331 2 0.046178711613946 RFvsST 441075875 495233119 54157245 no 453.285571006279 TraesCS1D01G451900 chr1D_493769208 chr1D 493769208 C T C T 3 splice_region_variant LOW transcript unique_Triplet 493764879 493769209 4331 2 0.046178711613946 RFvsST 441075875 495233119 54157245 no 453.285571006279 TraesCS1D01G452400 chr1D_493937225 chr1D 493937225 A G A G 3 synonymous_variant LOW transcript non_Triplet 493935367 493938266 2900 1 0.0344827586206897 RFvsST 441075875 495233119 54157245 no 11.9678046762843 TraesCS1D01G452900 chr1D_494063503 chr1D 494063503 A G A G 3 synonymous_variant LOW transcript unique_Triplet 494063179 494064769 1591 1 0.0628535512256442 RFvsST 441075875 495233119 54157245 no 89.7429232943504 TraesCS1D01G453100 chr1D_494146727 chr1D 494146727 T C T C 3 synonymous_variant LOW transcript unique_Triplet 494144128 494153513 9386 3 0.0319624973364586 RFvsST 441075875 495233119 54157245 no 6.39250641253667 TraesCS1D01G453100 chr1D_494147593 chr1D 494147593 C G C G 3 missense_variant MODERATE transcript unique_Triplet 494144128 494153513 9386 3 0.0319624973364586 RFvsST 441075875 495233119 54157245 no 6.39250641253667 TraesCS1D01G453100 chr1D_494148531 chr1D 494148531 T C T C 3 missense_variant MODERATE transcript unique_Triplet 494144128 494153513 9386 3 0.0319624973364586 RFvsST 441075875 495233119 54157245 no 6.39250641253667 TraesCS1D01G453600 chr1D_494473300 chr1D 494473300 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 494464354 494473536 9183 2 0.0217793749319395 RFvsST 441075875 495233119 54157245 no 95.426774840975 TraesCS1D01G453600 chr1D_494469311 chr1D 494469311 A G A G 3 synonymous_variant LOW transcript unique_Triplet 494464354 494473536 9183 2 0.0217793749319395 RFvsST 441075875 495233119 54157245 no 95.426774840975 TraesCS1D01G454400 chr1D_495113025 chr1D 495113025 T C T C 3 synonymous_variant LOW transcript non_Triplet 495111245 495113949 2705 1 0.0369685767097967 RFvsST 441075875 495233119 54157245 no 72.7588452226326 TraesCS1D01G454600 chr1D_495230469 chr1D 495230469 G A G A 3 synonymous_variant LOW transcript non_Triplet 495229870 495231449 1580 1 0.0632911392405063 RFvsST 441075875 495233119 54157245 no 193.256050576928 TraesCS2A01G000700 chr2A_400639 chr2A 400639 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 395708 400932 5225 1 0.0191387559808612 RFvsST 249825 150487748 150237924 no 31.6251230621662 TraesCS2A01G002500 chr2A_1372698 chr2A 1372698 A A G G 4 synonymous_variant LOW transcript non_Triplet 1370612 1380122 9511 5 0.0525707076017243 RFvsST 249825 150487748 150237924 no 87.7564314837356 TraesCS2A01G002500 chr2A_1373900 chr2A 1373900 C C T T 4 synonymous_variant LOW transcript non_Triplet 1370612 1380122 9511 5 0.0525707076017243 RFvsST 249825 150487748 150237924 no 87.7564314837356 TraesCS2A01G002500 chr2A_1371904 chr2A 1371904 C C T T 4 synonymous_variant LOW transcript non_Triplet 1370612 1380122 9511 5 0.0525707076017243 RFvsST 249825 150487748 150237924 no 87.7564314837356 TraesCS2A01G002500 chr2A_1381678 chr2A 1381678 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 1370612 1380122 9511 5 0.0525707076017243 RFvsST 249825 150487748 150237924 no 87.7564314837356 TraesCS2A01G002500 chr2A_1373849 chr2A 1373849 A A G G 4 synonymous_variant LOW transcript non_Triplet 1370612 1380122 9511 5 0.0525707076017243 RFvsST 249825 150487748 150237924 no 87.7564314837356 TraesCS2A01G003900 chr2A_2382094 chr2A 2382094 G T G T 3 missense_variant MODERATE transcript non_Triplet 2355896 2382397 26502 2 0.00754660025658441 RFvsST 249825 150487748 150237924 no 465.440523859125 TraesCS2A01G003900 chr2A_2385323 chr2A 2385323 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 2355896 2382397 26502 2 0.00754660025658441 RFvsST 249825 150487748 150237924 no 465.440523859125 TraesCS2A01G004300 chr2A_2373694 chr2A 2373694 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 2377872 2379498 1627 1 0.0614628149969269 RFvsST 249825 150487748 150237924 no 386.089225296643 TraesCS2A01G005000 chr2A_2647547 chr2A 2647547 G G A A 4 missense_variant MODERATE transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2642382 chr2A 2642382 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2652653 chr2A 2652653 C C T T 4 synonymous_variant LOW transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2638784 chr2A 2638784 A A C C 4 synonymous_variant LOW transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2647502 chr2A 2647502 G G A A 4 missense_variant MODERATE transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2640054 chr2A 2640054 G G T T 4 missense_variant MODERATE transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2652995 chr2A 2652995 C C T T 4 synonymous_variant LOW transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2646023 chr2A 2646023 A G A G 3 missense_variant MODERATE transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2641435 chr2A 2641435 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G005000 chr2A_2640560 chr2A 2640560 G G T T 4 missense_variant MODERATE transcript unique_Triplet 2638695 2653361 14667 10 0.0681802686302584 RFvsST 249825 150487748 150237924 no 626.195504444781 TraesCS2A01G007300 chr2A_3114108 chr2A 3114108 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 3111972 3114111 2140 3 0.14018691588785 RFvsST 249825 150487748 150237924 no 88.8902849718749 TraesCS2A01G007300 chr2A_3112093 chr2A 3112093 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 3111972 3114111 2140 3 0.14018691588785 RFvsST 249825 150487748 150237924 no 88.8902849718749 TraesCS2A01G007300 chr2A_3114049 chr2A 3114049 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 3111972 3114111 2140 3 0.14018691588785 RFvsST 249825 150487748 150237924 no 88.8902849718749 TraesCS2A01G007500 chr2A_3333823 chr2A 3333823 T C T C 3 missense_variant MODERATE transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3334456 chr2A 3334456 T T C C 4 missense_variant MODERATE transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3335093 chr2A 3335093 G A C C,A 6 missense_variant MODERATE transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3335703 chr2A 3335703 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3334034 chr2A 3334034 G A G A 3 synonymous_variant LOW transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3333831 chr2A 3333831 G C G C 3 missense_variant MODERATE transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3335661 chr2A 3335661 A A G G 4 synonymous_variant LOW transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007500 chr2A_3333659 chr2A 3333659 T T C C 4 missense_variant MODERATE transcript unique_Triplet 3333360 3335912 2553 8 0.313356835095966 RFvsST 249825 150487748 150237924 no 263.432405817818 TraesCS2A01G007800 chr2A_3444563 chr2A 3444563 C C T T 4 missense_variant MODERATE transcript unique_Triplet 3442409 3447453 5045 3 0.0594648166501487 RFvsST 249825 150487748 150237924 no 35.0794647449068 TraesCS2A01G007800 chr2A_3448758 chr2A 3448758 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 3442409 3447453 5045 3 0.0594648166501487 RFvsST 249825 150487748 150237924 no 35.0794647449068 TraesCS2A01G007800 chr2A_3444552 chr2A 3444552 G G A A 4 missense_variant MODERATE transcript unique_Triplet 3442409 3447453 5045 3 0.0594648166501487 RFvsST 249825 150487748 150237924 no 35.0794647449068 TraesCS2A01G007900 chr2A_3448920 chr2A 3448920 G G A A 4 synonymous_variant LOW transcript unique_Triplet 3448905 3450362 1458 1 0.0685871056241426 RFvsST 249825 150487748 150237924 no 54.0476529402724 TraesCS2A01G009300 chr2A_3799422 chr2A 3799422 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 3794470 3797034 2565 2 0.0779727095516569 RFvsST 249825 150487748 150237924 no 68.581670301088 TraesCS2A01G009300 chr2A_3799342 chr2A 3799342 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 3794470 3797034 2565 2 0.0779727095516569 RFvsST 249825 150487748 150237924 no 68.581670301088 TraesCS2A01G009400 chr2A_3797885 chr2A 3797885 T G T G 3 synonymous_variant LOW transcript non_Triplet 3797474 3800866 3393 1 0.0294724432655467 RFvsST 249825 150487748 150237924 no 96.9928440712357 TraesCS2A01G010000 chr2A_3954923 chr2A 3954923 T T G G 4 missense_variant MODERATE transcript unique_Triplet 3954639 3955945 1307 5 0.382555470543229 RFvsST 249825 150487748 150237924 no 168.049232773244 TraesCS2A01G010000 chr2A_3954619 chr2A 3954619 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 3954639 3955945 1307 5 0.382555470543229 RFvsST 249825 150487748 150237924 no 168.049232773244 TraesCS2A01G010000 chr2A_3955121 chr2A 3955121 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 3954639 3955945 1307 5 0.382555470543229 RFvsST 249825 150487748 150237924 no 168.049232773244 TraesCS2A01G010000 chr2A_3954726 chr2A 3954726 C C A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 3954639 3955945 1307 5 0.382555470543229 RFvsST 249825 150487748 150237924 no 168.049232773244 TraesCS2A01G010000 chr2A_3954922 chr2A 3954922 A A T T 4 missense_variant MODERATE transcript unique_Triplet 3954639 3955945 1307 5 0.382555470543229 RFvsST 249825 150487748 150237924 no 168.049232773244 TraesCS2A01G010200 chr2A_3967246 chr2A 3967246 A A C C 4 synonymous_variant LOW transcript unique_Triplet 3964870 3967583 2714 1 0.0368459837877671 RFvsST 249825 150487748 150237924 no 1456.09644513385 TraesCS2A01G011300 chr2A_4213410 chr2A 4213410 C C T T 4 synonymous_variant LOW transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G011300 chr2A_4213961 chr2A 4213961 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G011300 chr2A_4213812 chr2A 4213812 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G011300 chr2A_4213705 chr2A 4213705 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G011300 chr2A_4213849 chr2A 4213849 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G011300 chr2A_4212830 chr2A 4212830 G A G A 3 missense_variant MODERATE transcript non_Triplet 4212535 4213662 1128 6 0.531914893617021 RFvsST 249825 150487748 150237924 no 209.926082074907 TraesCS2A01G012000 chr2A_4620582 chr2A 4620582 C C G G 4 missense_variant MODERATE transcript unique_Triplet 4617009 4620782 3774 1 0.0264970853206147 RFvsST 249825 150487748 150237924 no 20.7242394519661 TraesCS2A01G012200 chr2A_4787154 chr2A 4787154 T T A A 4 synonymous_variant LOW transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4793241 chr2A 4793241 C C G G 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4787280 chr2A 4787280 C C A A 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4786763 chr2A 4786763 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4792561 chr2A 4792561 T T C C 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4787018 chr2A 4787018 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4793058 chr2A 4793058 T T C C 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4790098 chr2A 4790098 T T C C 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4790384 chr2A 4790384 T T C C 4 synonymous_variant LOW transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G012200 chr2A_4793298 chr2A 4793298 A A G G 4 missense_variant MODERATE transcript unique_Triplet 4786628 4793590 6963 10 0.143616257360333 RFvsST 249825 150487748 150237924 no 566.459828507345 TraesCS2A01G014200 chr2A_5676325 chr2A 5676325 G C G C 3 synonymous_variant LOW transcript unique_Triplet 5676113 5678020 1908 1 0.0524109014675052 RFvsST 249825 150487748 150237924 no 133.626185419531 TraesCS2A01G014300 chr2A_5690320 chr2A 5690320 C T C T 3 synonymous_variant LOW transcript unique_Triplet 5690317 5692857 2541 3 0.118063754427391 RFvsST 249825 150487748 150237924 no 86.5108259395068 TraesCS2A01G014300 chr2A_5692793 chr2A 5692793 G G A A 4 missense_variant MODERATE transcript unique_Triplet 5690317 5692857 2541 3 0.118063754427391 RFvsST 249825 150487748 150237924 no 86.5108259395068 TraesCS2A01G014300 chr2A_5692747 chr2A 5692747 C C T T 4 synonymous_variant LOW transcript unique_Triplet 5690317 5692857 2541 3 0.118063754427391 RFvsST 249825 150487748 150237924 no 86.5108259395068 TraesCS2A01G016700 chr2A_7742688 chr2A 7742688 A G A G 3 missense_variant MODERATE transcript non_Triplet 7741619 7743073 1455 4 0.274914089347079 RFvsST 249825 150487748 150237924 no 110.604967309573 TraesCS2A01G016700 chr2A_7742869 chr2A 7742869 A G A G 3 synonymous_variant LOW transcript non_Triplet 7741619 7743073 1455 4 0.274914089347079 RFvsST 249825 150487748 150237924 no 110.604967309573 TraesCS2A01G016700 chr2A_7743023 chr2A 7743023 C T C T 3 missense_variant MODERATE transcript non_Triplet 7741619 7743073 1455 4 0.274914089347079 RFvsST 249825 150487748 150237924 no 110.604967309573 TraesCS2A01G016700 chr2A_7743006 chr2A 7743006 G A G A 3 missense_variant MODERATE transcript non_Triplet 7741619 7743073 1455 4 0.274914089347079 RFvsST 249825 150487748 150237924 no 110.604967309573 TraesCS2A01G022100 chr2A_10600452 chr2A 10600452 T T C C 4 missense_variant MODERATE transcript unique_Triplet 10596614 10600905 4292 1 0.0232991612301957 RFvsST 249825 150487748 150237924 no 539.035882665765 TraesCS2A01G022700 chr2A_10996043 chr2A 10996043 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10993868 chr2A 10993868 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10994391 chr2A 10994391 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10994017 chr2A 10994017 C A C A 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10994338 chr2A 10994338 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10993577 chr2A 10993577 A T A T 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10993847 chr2A 10993847 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10994409 chr2A 10994409 C A C A 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022700 chr2A_10995058 chr2A 10995058 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 10992992 10995895 2904 9 0.309917355371901 RFvsST 249825 150487748 150237924 no 1304.79408061116 TraesCS2A01G022800 chr2A_11025526 chr2A 11025526 C T C T 3 missense_variant MODERATE transcript non_Triplet 11023897 11025605 1709 3 0.175541252194266 RFvsST 249825 150487748 150237924 no 671.422322252314 TraesCS2A01G022800 chr2A_11025095 chr2A 11025095 T C T C 3 missense_variant MODERATE transcript non_Triplet 11023897 11025605 1709 3 0.175541252194266 RFvsST 249825 150487748 150237924 no 671.422322252314 TraesCS2A01G022800 chr2A_11025564 chr2A 11025564 C T C T 3 synonymous_variant LOW transcript non_Triplet 11023897 11025605 1709 3 0.175541252194266 RFvsST 249825 150487748 150237924 no 671.422322252314 TraesCS2A01G023400 chr2A_11379719 chr2A 11379719 C A C A 3 missense_variant MODERATE transcript non_Triplet 11372891 11379765 6875 1 0.0145454545454545 RFvsST 249825 150487748 150237924 no 269.895737254265 TraesCS2A01G025200 chr2A_11997882 chr2A 11997882 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 11989882 11994420 4539 1 0.0220312844238819 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G028800 chr2A_13019065 chr2A 13019065 G A G A 3 stop_gained HIGH transcript non_Triplet 13015871 13028444 12574 1 0.00795291872117067 RFvsST 249825 150487748 150237924 no 37.7971368109893 TraesCS2A01G029800 chr2A_13408931 chr2A 13408931 G G C C 4 missense_variant MODERATE transcript non_Triplet 13405669 13409022 3354 1 0.0298151460942159 RFvsST 249825 150487748 150237924 no 314.719996280805 TraesCS2A01G039700 chr2A_16487433 chr2A 16487433 A A T T 4 missense_variant MODERATE transcript unique_Triplet 16487302 16490549 3248 1 0.0307881773399015 RFvsST 249825 150487748 150237924 no 133.270154034994 TraesCS2A01G042000 chr2A_16872066 chr2A 16872066 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 16872212 16875939 3728 1 0.0268240343347639 RFvsST 249825 150487748 150237924 no 101.194041218631 TraesCS2A01G048600 chr2A_18834318 chr2A 18834318 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18833595 18835087 1493 1 0.0669792364367046 RFvsST 249825 150487748 150237924 no 248.58927081359 TraesCS2A01G053100 chr2A_21254513 chr2A 21254513 C G C G 3 missense_variant MODERATE transcript non_Triplet 21252481 21254544 2064 1 0.0484496124031008 RFvsST 249825 150487748 150237924 no 973.086577471976 TraesCS2A01G053500 chr2A_21534263 chr2A 21534263 C T C T 3 synonymous_variant LOW transcript non_Triplet 21531909 21534385 2477 1 0.040371417036738 RFvsST 249825 150487748 150237924 no 41.0511675219915 TraesCS2A01G063600 chr2A_28017879 chr2A 28017879 G G A A 4 missense_variant MODERATE transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28018210 chr2A 28018210 G G A A 4 synonymous_variant LOW transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28018094 chr2A 28018094 A A G G 4 missense_variant MODERATE transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28018145 chr2A 28018145 T T C C 4 missense_variant MODERATE transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28018456 chr2A 28018456 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28018629 chr2A 28018629 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G063600 chr2A_28016680 chr2A 28016680 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 28017433 28025235 7803 7 0.0897090862488786 RFvsST 249825 150487748 150237924 no 91.1104981494584 TraesCS2A01G064200 chr2A_28787779 chr2A 28787779 G G A A 4 missense_variant MODERATE transcript non_Triplet 28786056 28791795 5740 5 0.0871080139372822 RFvsST 249825 150487748 150237924 no 15.4334502519585 TraesCS2A01G064200 chr2A_28789791 chr2A 28789791 A A G G 4 synonymous_variant LOW transcript non_Triplet 28786056 28791795 5740 5 0.0871080139372822 RFvsST 249825 150487748 150237924 no 15.4334502519585 TraesCS2A01G064200 chr2A_28787763 chr2A 28787763 G G A A 4 synonymous_variant LOW transcript non_Triplet 28786056 28791795 5740 5 0.0871080139372822 RFvsST 249825 150487748 150237924 no 15.4334502519585 TraesCS2A01G064200 chr2A_28791285 chr2A 28791285 A A G G 4 synonymous_variant LOW transcript non_Triplet 28786056 28791795 5740 5 0.0871080139372822 RFvsST 249825 150487748 150237924 no 15.4334502519585 TraesCS2A01G064200 chr2A_28789674 chr2A 28789674 C C G G 4 missense_variant MODERATE transcript non_Triplet 28786056 28791795 5740 5 0.0871080139372822 RFvsST 249825 150487748 150237924 no 15.4334502519585 TraesCS2A01G064300 chr2A_28803532 chr2A 28803532 A A C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 28800269 28803997 3729 2 0.053633681952266 RFvsST 249825 150487748 150237924 no 46.880845495511 TraesCS2A01G064300 chr2A_28803435 chr2A 28803435 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 28800269 28803997 3729 2 0.053633681952266 RFvsST 249825 150487748 150237924 no 46.880845495511 TraesCS2A01G064600 chr2A_28830627 chr2A 28830627 A A G G 4 synonymous_variant LOW transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28825498 chr2A 28825498 A A G G 4 missense_variant MODERATE transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28822366 chr2A 28822366 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28822713 chr2A 28822713 G G A A 4 synonymous_variant LOW transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28822624 chr2A 28822624 C C G G 4 missense_variant MODERATE transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28824804 chr2A 28824804 T T G G 4 missense_variant MODERATE transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28822732 chr2A 28822732 A A G G 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064600 chr2A_28826185 chr2A 28826185 A A G G 4 missense_variant MODERATE transcript unique_Triplet 28822392 28831229 8838 8 0.0905182167911292 RFvsST 249825 150487748 150237924 no 189.765917546078 TraesCS2A01G064700 chr2A_29099395 chr2A 29099395 G G C C 4 missense_variant MODERATE transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29102584 chr2A 29102584 A A G G 4 synonymous_variant LOW transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29096037 chr2A 29096037 C C T T 4 synonymous_variant LOW transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29095944 chr2A 29095944 C C T T 4 synonymous_variant LOW transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29098537 chr2A 29098537 G G T T 4 missense_variant MODERATE transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29095821 chr2A 29095821 C C T T 4 synonymous_variant LOW transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29095912 chr2A 29095912 A A G G 4 missense_variant MODERATE transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064700 chr2A_29095869 chr2A 29095869 C C A A 4 synonymous_variant LOW transcript non_Triplet 29095129 29105376 10248 8 0.078064012490242 RFvsST 249825 150487748 150237924 no 576.973038319645 TraesCS2A01G064900 chr2A_29262070 chr2A 29262070 T T C C 4 synonymous_variant LOW transcript unique_Triplet 29261927 29262565 639 1 0.156494522691706 RFvsST 249825 150487748 150237924 no 115.291742861962 TraesCS2A01G065000 chr2A_29285540 chr2A 29285540 T T C C 4 missense_variant MODERATE transcript unique_Triplet 29285286 29290439 5154 2 0.0388048117966628 RFvsST 249825 150487748 150237924 no 83.3644039376936 TraesCS2A01G065000 chr2A_29285455 chr2A 29285455 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 29285286 29290439 5154 2 0.0388048117966628 RFvsST 249825 150487748 150237924 no 83.3644039376936 TraesCS2A01G065100 chr2A_29592293 chr2A 29592293 T T C C 4 synonymous_variant LOW transcript unique_Triplet 29579906 29592347 12442 1 0.00803729303970423 RFvsST 249825 150487748 150237924 no 72.7844764774728 TraesCS2A01G066100 chr2A_29877256 chr2A 29877256 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 29870058 29872379 2322 5 0.215331610680448 RFvsST 249825 150487748 150237924 no 143.362867106794 TraesCS2A01G066100 chr2A_29872414 chr2A 29872414 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 29870058 29872379 2322 5 0.215331610680448 RFvsST 249825 150487748 150237924 no 143.362867106794 TraesCS2A01G066100 chr2A_29872214 chr2A 29872214 A A C C 4 synonymous_variant LOW transcript unique_Triplet 29870058 29872379 2322 5 0.215331610680448 RFvsST 249825 150487748 150237924 no 143.362867106794 TraesCS2A01G066100 chr2A_29872397 chr2A 29872397 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 29870058 29872379 2322 5 0.215331610680448 RFvsST 249825 150487748 150237924 no 143.362867106794 TraesCS2A01G066100 chr2A_29871835 chr2A 29871835 T T C C 4 synonymous_variant LOW transcript unique_Triplet 29870058 29872379 2322 5 0.215331610680448 RFvsST 249825 150487748 150237924 no 143.362867106794 TraesCS2A01G066200 chr2A_29879385 chr2A 29879385 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 29877273 29879365 2093 3 0.143334925943622 RFvsST 249825 150487748 150237924 no 249.560492136727 TraesCS2A01G066200 chr2A_29877339 chr2A 29877339 A A G G 4 synonymous_variant LOW transcript non_Triplet 29877273 29879365 2093 3 0.143334925943622 RFvsST 249825 150487748 150237924 no 249.560492136727 TraesCS2A01G066200 chr2A_29877309 chr2A 29877309 A A C C 4 synonymous_variant LOW transcript non_Triplet 29877273 29879365 2093 3 0.143334925943622 RFvsST 249825 150487748 150237924 no 249.560492136727 TraesCS2A01G066800 chr2A_30047856 chr2A 30047856 A A T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 30047814 30049118 1305 2 0.153256704980843 RFvsST 249825 150487748 150237924 no 50016.006366149 TraesCS2A01G066800 chr2A_30048524 chr2A 30048524 A A T T 4 intron_variant MODIFIER transcript non_Triplet 30047814 30049118 1305 2 0.153256704980843 RFvsST 249825 150487748 150237924 no 50016.006366149 TraesCS2A01G066900 chr2A_30072450 chr2A 30072450 A A G G 4 intron_variant MODIFIER transcript non_Triplet 30071632 30072776 1145 1 0.0873362445414847 RFvsST 249825 150487748 150237924 no 17473.5283820475 TraesCS2A01G067000 chr2A_30079252 chr2A 30079252 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 30079492 30080632 1141 1 0.0876424189307625 RFvsST 249825 150487748 150237924 no 1929.75965802198 TraesCS2A01G067100 chr2A_30091101 chr2A 30091101 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091308 chr2A 30091308 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091382 chr2A 30091382 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091356 chr2A 30091356 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091089 chr2A 30091089 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091188 chr2A 30091188 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091244 chr2A 30091244 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067100 chr2A_30091433 chr2A 30091433 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30085565 30086899 1335 8 0.599250936329588 RFvsST 249825 150487748 150237924 no 2367.95080036347 TraesCS2A01G067600 chr2A_30144360 chr2A 30144360 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30138626 30142177 3552 1 0.0281531531531532 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G067700 chr2A_30147904 chr2A 30147904 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 30144390 30147039 2650 3 0.113207547169811 RFvsST 249825 150487748 150237924 no 82.682240010861 TraesCS2A01G067700 chr2A_30147196 chr2A 30147196 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 30144390 30147039 2650 3 0.113207547169811 RFvsST 249825 150487748 150237924 no 82.682240010861 TraesCS2A01G067700 chr2A_30144692 chr2A 30144692 C C T T 4 missense_variant MODERATE transcript non_Triplet 30144390 30147039 2650 3 0.113207547169811 RFvsST 249825 150487748 150237924 no 82.682240010861 TraesCS2A01G067800 chr2A_30148175 chr2A 30148175 C C T T 4 missense_variant MODERATE transcript unique_Triplet 30148107 30153413 5307 1 0.0188430374976446 RFvsST 249825 150487748 150237924 no 219.484988688321 TraesCS2A01G069400 chr2A_30456670 chr2A 30456670 C C A A 4 synonymous_variant LOW transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30455456 chr2A 30455456 A A G G 4 missense_variant MODERATE transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30454578 chr2A 30454578 G G A A 4 synonymous_variant LOW transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30451643 chr2A 30451643 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30456163 chr2A 30456163 C C T T 4 missense_variant MODERATE transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30452299 chr2A 30452299 T T C C 4 missense_variant MODERATE transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069400 chr2A_30451512 chr2A 30451512 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 30451779 30463948 12170 7 0.057518488085456 RFvsST 249825 150487748 150237924 no 618.979727298116 TraesCS2A01G069500 chr2A_30553647 chr2A 30553647 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 30549640 30552897 3258 3 0.0920810313075506 RFvsST 249825 150487748 150237924 no 830.645610881505 TraesCS2A01G069500 chr2A_30549544 chr2A 30549544 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 30549640 30552897 3258 3 0.0920810313075506 RFvsST 249825 150487748 150237924 no 830.645610881505 TraesCS2A01G069500 chr2A_30549733 chr2A 30549733 T T C C 4 synonymous_variant LOW transcript unique_Triplet 30549640 30552897 3258 3 0.0920810313075506 RFvsST 249825 150487748 150237924 no 830.645610881505 TraesCS2A01G070100 chr2A_30864686 chr2A 30864686 G G A A 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865412 chr2A 30865412 T T G G 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865176 chr2A 30865176 A A G G 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865010 chr2A 30865010 G G A A 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865265 chr2A 30865265 G G A A 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30866220 chr2A 30866220 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865285 chr2A 30865285 G G C C 4 synonymous_variant LOW transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865138 chr2A 30865138 T T C C 4 synonymous_variant LOW transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865502 chr2A 30865502 G G C C 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30864886 chr2A 30864886 T T C C 4 synonymous_variant LOW transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30866012 chr2A 30866012 A A C C 4 synonymous_variant LOW transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30866076 chr2A 30866076 T T C C 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865497 chr2A 30865497 T T C C 4 missense_variant MODERATE transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070100 chr2A_30865249 chr2A 30865249 G G C C 4 synonymous_variant LOW transcript non_Triplet 30864623 30866285 1663 14 0.841852074564041 RFvsST 249825 150487748 150237924 no 655.863376430204 TraesCS2A01G070300 chr2A_31072433 chr2A 31072433 C G C G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 31072322 31077071 4750 1 0.0210526315789474 RFvsST 249825 150487748 150237924 no 155.323707654108 TraesCS2A01G070700 chr2A_31173558 chr2A 31173558 G C G C 3 missense_variant MODERATE transcript non_Triplet 31172760 31177459 4700 3 0.0638297872340425 RFvsST 249825 150487748 150237924 no 573.521853329006 TraesCS2A01G070700 chr2A_31176092 chr2A 31176092 G G A A 4 missense_variant MODERATE transcript non_Triplet 31172760 31177459 4700 3 0.0638297872340425 RFvsST 249825 150487748 150237924 no 573.521853329006 TraesCS2A01G070700 chr2A_31174968 chr2A 31174968 G G C C 4 missense_variant MODERATE transcript non_Triplet 31172760 31177459 4700 3 0.0638297872340425 RFvsST 249825 150487748 150237924 no 573.521853329006 TraesCS2A01G079300 chr2A_36039169 chr2A 36039169 T C T C 3 missense_variant MODERATE transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36039328 chr2A 36039328 A G A G 3 missense_variant MODERATE transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36039487 chr2A 36039487 T C T C 3 synonymous_variant LOW transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36039072 chr2A 36039072 C T C T 3 synonymous_variant LOW transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36041158 chr2A 36041158 C A C A 3 missense_variant MODERATE transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36039096 chr2A 36039096 G A G A 3 synonymous_variant LOW transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36041133 chr2A 36041133 A G A G 3 missense_variant MODERATE transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36040964 chr2A 36040964 A G A G 3 missense_variant MODERATE transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079300 chr2A_36040924 chr2A 36040924 A G A G 3 synonymous_variant LOW transcript unique_Triplet 36037725 36041668 3944 9 0.228194726166329 RFvsST 249825 150487748 150237924 no 287.746637296275 TraesCS2A01G079400 chr2A_36041805 chr2A 36041805 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36042234 36044597 2364 1 0.0423011844331641 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G081900 chr2A_36938388 chr2A 36938388 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 36933684 36938202 4519 1 0.0221287895552113 RFvsST 249825 150487748 150237924 no 336.772383371948 TraesCS2A01G085000 chr2A_38972671 chr2A 38972671 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 38971989 38982152 10164 2 0.0196772924045651 RFvsST 249825 150487748 150237924 no 153.226584555957 TraesCS2A01G085000 chr2A_38977489 chr2A 38977489 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 38971989 38982152 10164 2 0.0196772924045651 RFvsST 249825 150487748 150237924 no 153.226584555957 TraesCS2A01G087000 chr2A_40541271 chr2A 40541271 T T C C 4 missense_variant MODERATE transcript unique_Triplet 40541031 40547241 6211 1 0.0161004669135405 RFvsST 249825 150487748 150237924 no 19.107661220772 TraesCS2A01G088000 chr2A_41232195 chr2A 41232195 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 41231882 41242852 10971 5 0.0455746969282654 RFvsST 249825 150487748 150237924 no 64.6701326503881 TraesCS2A01G088000 chr2A_41240414 chr2A 41240414 C C T T 4 missense_variant MODERATE transcript unique_Triplet 41231882 41242852 10971 5 0.0455746969282654 RFvsST 249825 150487748 150237924 no 64.6701326503881 TraesCS2A01G088000 chr2A_41232478 chr2A 41232478 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 41231882 41242852 10971 5 0.0455746969282654 RFvsST 249825 150487748 150237924 no 64.6701326503881 TraesCS2A01G088000 chr2A_41232546 chr2A 41232546 A A G G 4 stop_lost&splice_region_variant HIGH transcript unique_Triplet 41231882 41242852 10971 5 0.0455746969282654 RFvsST 249825 150487748 150237924 no 64.6701326503881 TraesCS2A01G088000 chr2A_41232564 chr2A 41232564 C C T T 4 missense_variant MODERATE transcript unique_Triplet 41231882 41242852 10971 5 0.0455746969282654 RFvsST 249825 150487748 150237924 no 64.6701326503881 TraesCS2A01G088800 chr2A_42152698 chr2A 42152698 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 42152436 42153985 1550 5 0.32258064516129 RFvsST 249825 150487748 150237924 no 377.216793299239 TraesCS2A01G088800 chr2A_42152651 chr2A 42152651 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 42152436 42153985 1550 5 0.32258064516129 RFvsST 249825 150487748 150237924 no 377.216793299239 TraesCS2A01G088800 chr2A_42152958 chr2A 42152958 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 42152436 42153985 1550 5 0.32258064516129 RFvsST 249825 150487748 150237924 no 377.216793299239 TraesCS2A01G088800 chr2A_42152811 chr2A 42152811 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 42152436 42153985 1550 5 0.32258064516129 RFvsST 249825 150487748 150237924 no 377.216793299239 TraesCS2A01G088800 chr2A_42152326 chr2A 42152326 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 42152436 42153985 1550 5 0.32258064516129 RFvsST 249825 150487748 150237924 no 377.216793299239 TraesCS2A01G088900 chr2A_42157611 chr2A 42157611 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 42156570 42162130 5561 1 0.0179823772702751 RFvsST 249825 150487748 150237924 no 82.1908065891931 TraesCS2A01G089200 chr2A_42392585 chr2A 42392585 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 42389828 42392707 2880 4 0.138888888888889 RFvsST 249825 150487748 150237924 no 75.4667987382615 TraesCS2A01G089200 chr2A_42392036 chr2A 42392036 T T A A 4 missense_variant MODERATE transcript non_Triplet 42389828 42392707 2880 4 0.138888888888889 RFvsST 249825 150487748 150237924 no 75.4667987382615 TraesCS2A01G089200 chr2A_42392191 chr2A 42392191 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 42389828 42392707 2880 4 0.138888888888889 RFvsST 249825 150487748 150237924 no 75.4667987382615 TraesCS2A01G089200 chr2A_42392531 chr2A 42392531 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 42389828 42392707 2880 4 0.138888888888889 RFvsST 249825 150487748 150237924 no 75.4667987382615 TraesCS2A01G089300 chr2A_42470650 chr2A 42470650 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 42470945 42476145 5201 2 0.038454143433955 RFvsST 249825 150487748 150237924 no 47.4406715410471 TraesCS2A01G089300 chr2A_42475460 chr2A 42475460 C C T T 4 missense_variant MODERATE transcript unique_Triplet 42470945 42476145 5201 2 0.038454143433955 RFvsST 249825 150487748 150237924 no 47.4406715410471 TraesCS2A01G091700 chr2A_44097832 chr2A 44097832 A A G G 4 missense_variant MODERATE transcript non_Triplet 44094405 44102050 7646 4 0.0523149359142035 RFvsST 249825 150487748 150237924 no 95.326696411354 TraesCS2A01G091700 chr2A_44094979 chr2A 44094979 C C A A 4 missense_variant MODERATE transcript non_Triplet 44094405 44102050 7646 4 0.0523149359142035 RFvsST 249825 150487748 150237924 no 95.326696411354 TraesCS2A01G091700 chr2A_44095502 chr2A 44095502 G G T T 4 synonymous_variant LOW transcript non_Triplet 44094405 44102050 7646 4 0.0523149359142035 RFvsST 249825 150487748 150237924 no 95.326696411354 TraesCS2A01G091700 chr2A_44095854 chr2A 44095854 G G T T 4 missense_variant MODERATE transcript non_Triplet 44094405 44102050 7646 4 0.0523149359142035 RFvsST 249825 150487748 150237924 no 95.326696411354 TraesCS2A01G092000 chr2A_44837661 chr2A 44837661 T T C C 4 intron_variant MODIFIER transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44837669 chr2A 44837669 A A G G 4 intron_variant MODIFIER transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44836311 chr2A 44836311 T T C C 4 synonymous_variant LOW transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44836509 chr2A 44836509 G G A A 4 missense_variant MODERATE transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44840200 chr2A 44840200 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44835820 chr2A 44835820 T T C C 4 synonymous_variant LOW transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44836111 chr2A 44836111 A A G G 4 missense_variant MODERATE transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092000 chr2A_44837463 chr2A 44837463 A A G G 4 missense_variant MODERATE transcript non_Triplet 44835794 44837972 2179 8 0.367140890316659 RFvsST 249825 150487748 150237924 no 27.6992842962251 TraesCS2A01G092200 chr2A_45085059 chr2A 45085059 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 45085317 45085622 306 2 0.65359477124183 RFvsST 249825 150487748 150237924 no 338.912617849944 TraesCS2A01G092200 chr2A_45085123 chr2A 45085123 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 45085317 45085622 306 2 0.65359477124183 RFvsST 249825 150487748 150237924 no 338.912617849944 TraesCS2A01G092400 chr2A_45120272 chr2A 45120272 T T C C 4 missense_variant MODERATE transcript unique_Triplet 45119097 45127384 8288 1 0.0120656370656371 RFvsST 249825 150487748 150237924 no 9.4246160674045 TraesCS2A01G093600 chr2A_47828691 chr2A 47828691 G G A A 4 missense_variant MODERATE transcript unique_Triplet 47828018 47829247 1230 1 0.0813008130081301 RFvsST 249825 150487748 150237924 no 114.874907603197 TraesCS2A01G093700 chr2A_47833570 chr2A 47833570 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 47830536 47833610 3075 2 0.0650406504065041 RFvsST 249825 150487748 150237924 no 205.141040646081 TraesCS2A01G093700 chr2A_47833266 chr2A 47833266 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 47830536 47833610 3075 2 0.0650406504065041 RFvsST 249825 150487748 150237924 no 205.141040646081 TraesCS2A01G095500 chr2A_48868261 chr2A 48868261 A A G G 4 missense_variant MODERATE transcript unique_Triplet 48867219 48876979 9761 2 0.0204897039237783 RFvsST 249825 150487748 150237924 no 48.4232679849528 TraesCS2A01G095500 chr2A_48868267 chr2A 48868267 T T C C 4 missense_variant MODERATE transcript unique_Triplet 48867219 48876979 9761 2 0.0204897039237783 RFvsST 249825 150487748 150237924 no 48.4232679849528 TraesCS2A01G095600 chr2A_49176723 chr2A 49176723 T T C C 4 synonymous_variant LOW transcript unique_Triplet 49171615 49176813 5199 5 0.0961723408347759 RFvsST 249825 150487748 150237924 no 261.582935152847 TraesCS2A01G095600 chr2A_49176324 chr2A 49176324 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 49171615 49176813 5199 5 0.0961723408347759 RFvsST 249825 150487748 150237924 no 261.582935152847 TraesCS2A01G095600 chr2A_49176264 chr2A 49176264 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 49171615 49176813 5199 5 0.0961723408347759 RFvsST 249825 150487748 150237924 no 261.582935152847 TraesCS2A01G095600 chr2A_49174939 chr2A 49174939 A A G G 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 49171615 49176813 5199 5 0.0961723408347759 RFvsST 249825 150487748 150237924 no 261.582935152847 TraesCS2A01G095600 chr2A_49174680 chr2A 49174680 T T A A 4 missense_variant MODERATE transcript unique_Triplet 49171615 49176813 5199 5 0.0961723408347759 RFvsST 249825 150487748 150237924 no 261.582935152847 TraesCS2A01G096000 chr2A_49851341 chr2A 49851341 A A G G 4 synonymous_variant LOW transcript unique_Triplet 49845461 49851482 6022 1 0.0166057788110262 RFvsST 249825 150487748 150237924 no 24.6645841985246 TraesCS2A01G096600 chr2A_50164939 chr2A 50164939 T T C C 4 missense_variant MODERATE transcript non_Triplet 50164667 50169047 4381 1 0.0228258388495777 RFvsST 249825 150487748 150237924 no 91.9357240938562 TraesCS2A01G097500 chr2A_51497011 chr2A 51497011 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 51493887 51499389 5503 1 0.0181719062329638 RFvsST 249825 150487748 150237924 no 187.771566877229 TraesCS2A01G097800 chr2A_51564761 chr2A 51564761 T T A A 4 missense_variant MODERATE transcript unique_Triplet 51562669 51565820 3152 1 0.0317258883248731 RFvsST 249825 150487748 150237924 no 81.0465578906671 TraesCS2A01G100300 chr2A_53290406 chr2A 53290406 T T C C 4 missense_variant MODERATE transcript unique_Triplet 53289354 53291201 1848 1 0.0541125541125541 RFvsST 249825 150487748 150237924 no 146.065747160235 TraesCS2A01G102300 chr2A_55853015 chr2A 55853015 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 55850493 55854664 4172 1 0.0239693192713327 RFvsST 249825 150487748 150237924 no 208.697676509916 TraesCS2A01G105400 chr2A_58000420 chr2A 58000420 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 57998060 58000517 2458 1 0.0406834825061025 RFvsST 249825 150487748 150237924 no 206.657022984728 TraesCS2A01G105600 chr2A_58018035 chr2A 58018035 A A G G 4 missense_variant MODERATE transcript unique_Triplet 58012403 58019026 6624 2 0.0301932367149758 RFvsST 249825 150487748 150237924 no 484.865024841093 TraesCS2A01G105600 chr2A_58018845 chr2A 58018845 C C T T 4 missense_variant MODERATE transcript unique_Triplet 58012403 58019026 6624 2 0.0301932367149758 RFvsST 249825 150487748 150237924 no 484.865024841093 TraesCS2A01G106100 chr2A_58393582 chr2A 58393582 G G A A 4 missense_variant MODERATE transcript unique_Triplet 58393186 58394815 1630 2 0.122699386503067 RFvsST 249825 150487748 150237924 no 10.8165038228804 TraesCS2A01G106100 chr2A_58393041 chr2A 58393041 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 58393186 58394815 1630 2 0.122699386503067 RFvsST 249825 150487748 150237924 no 10.8165038228804 TraesCS2A01G106500 chr2A_58549786 chr2A 58549786 C C A A 4 missense_variant MODERATE transcript non_Triplet 58549372 58550673 1302 4 0.307219662058372 RFvsST 249825 150487748 150237924 no 145.133342527367 TraesCS2A01G106500 chr2A_58550596 chr2A 58550596 C C G G 4 synonymous_variant LOW transcript non_Triplet 58549372 58550673 1302 4 0.307219662058372 RFvsST 249825 150487748 150237924 no 145.133342527367 TraesCS2A01G106500 chr2A_58550729 chr2A 58550729 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 58549372 58550673 1302 4 0.307219662058372 RFvsST 249825 150487748 150237924 no 145.133342527367 TraesCS2A01G106500 chr2A_58550271 chr2A 58550271 A A G G 4 missense_variant MODERATE transcript non_Triplet 58549372 58550673 1302 4 0.307219662058372 RFvsST 249825 150487748 150237924 no 145.133342527367 TraesCS2A01G106700 chr2A_58825834 chr2A 58825834 G G A A 4 missense_variant MODERATE transcript non_Triplet 58824379 58826021 1643 1 0.0608642726719416 RFvsST 249825 150487748 150237924 no 38.764464407925 TraesCS2A01G106800 chr2A_59060148 chr2A 59060148 G G A A 4 synonymous_variant LOW transcript non_Triplet 59058313 59063998 5686 2 0.0351741118536757 RFvsST 249825 150487748 150237924 no 66.5394278950411 TraesCS2A01G106800 chr2A_59058735 chr2A 59058735 T T A A 4 missense_variant MODERATE transcript non_Triplet 59058313 59063998 5686 2 0.0351741118536757 RFvsST 249825 150487748 150237924 no 66.5394278950411 TraesCS2A01G109600 chr2A_61468913 chr2A 61468913 G G C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 61464890 61468922 4033 1 0.0247954376394743 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G109700 chr2A_61468948 chr2A 61468948 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 61468779 61479857 11079 4 0.036104341547071 RFvsST 249825 150487748 150237924 no 154.348033659273 TraesCS2A01G109700 chr2A_61470409 chr2A 61470409 G G A A 4 synonymous_variant LOW transcript unique_Triplet 61468779 61479857 11079 4 0.036104341547071 RFvsST 249825 150487748 150237924 no 154.348033659273 TraesCS2A01G109700 chr2A_61472651 chr2A 61472651 T T C C 4 missense_variant MODERATE transcript unique_Triplet 61468779 61479857 11079 4 0.036104341547071 RFvsST 249825 150487748 150237924 no 154.348033659273 TraesCS2A01G109700 chr2A_61469135 chr2A 61469135 G G A A 4 missense_variant MODERATE transcript unique_Triplet 61468779 61479857 11079 4 0.036104341547071 RFvsST 249825 150487748 150237924 no 154.348033659273 TraesCS2A01G110600 chr2A_62298912 chr2A 62298912 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 62291628 62295204 3577 2 0.0559127760693318 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G110600 chr2A_62293286 chr2A 62293286 G G A A 4 synonymous_variant LOW transcript unique_Triplet 62291628 62295204 3577 2 0.0559127760693318 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G115000 chr2A_65675249 chr2A 65675249 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 65665247 65670433 5187 2 0.0385579332947754 RFvsST 249825 150487748 150237924 no 20.0185811811369 TraesCS2A01G115000 chr2A_65673001 chr2A 65673001 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 65665247 65670433 5187 2 0.0385579332947754 RFvsST 249825 150487748 150237924 no 20.0185811811369 TraesCS2A01G115100 chr2A_65673202 chr2A 65673202 G G A A 4 synonymous_variant LOW transcript unique_Triplet 65673148 65674262 1115 1 0.0896860986547085 RFvsST 249825 150487748 150237924 no 2.83514163536145 TraesCS2A01G115400 chr2A_65821240 chr2A 65821240 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 65819551 65822924 3374 3 0.0889152341434499 RFvsST 249825 150487748 150237924 no 174.759384248213 TraesCS2A01G115400 chr2A_65821941 chr2A 65821941 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 65819551 65822924 3374 3 0.0889152341434499 RFvsST 249825 150487748 150237924 no 174.759384248213 TraesCS2A01G115400 chr2A_65821536 chr2A 65821536 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 65819551 65822924 3374 3 0.0889152341434499 RFvsST 249825 150487748 150237924 no 174.759384248213 TraesCS2A01G116600 chr2A_66582632 chr2A 66582632 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 66579293 66589411 10119 1 0.00988239944658563 RFvsST 249825 150487748 150237924 no 1561.81694067633 TraesCS2A01G116700 chr2A_66799149 chr2A 66799149 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 66799181 66805095 5915 3 0.0507185122569738 RFvsST 249825 150487748 150237924 no 718.687071506917 TraesCS2A01G116700 chr2A_66809313 chr2A 66809313 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66799181 66805095 5915 3 0.0507185122569738 RFvsST 249825 150487748 150237924 no 718.687071506917 TraesCS2A01G116700 chr2A_66804046 chr2A 66804046 A A G G 4 missense_variant MODERATE transcript unique_Triplet 66799181 66805095 5915 3 0.0507185122569738 RFvsST 249825 150487748 150237924 no 718.687071506917 TraesCS2A01G117000 chr2A_67067992 chr2A 67067992 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 67067685 67073602 5918 2 0.0337952010814464 RFvsST 249825 150487748 150237924 no 424.779296157319 TraesCS2A01G117000 chr2A_67069082 chr2A 67069082 T T A A 4 missense_variant MODERATE transcript unique_Triplet 67067685 67073602 5918 2 0.0337952010814464 RFvsST 249825 150487748 150237924 no 424.779296157319 TraesCS2A01G117100 chr2A_67081371 chr2A 67081371 G G A A 4 synonymous_variant LOW transcript non_Triplet 67075512 67082803 7292 2 0.0274273176083379 RFvsST 249825 150487748 150237924 no 47.9315892482289 TraesCS2A01G117100 chr2A_67081044 chr2A 67081044 A A G G 4 synonymous_variant LOW transcript non_Triplet 67075512 67082803 7292 2 0.0274273176083379 RFvsST 249825 150487748 150237924 no 47.9315892482289 TraesCS2A01G117600 chr2A_67980325 chr2A 67980325 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 67969846 67979486 9641 1 0.0103723680116171 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G118200 chr2A_68862819 chr2A 68862819 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 68866158 68867069 912 1 0.109649122807018 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G118700 chr2A_69211754 chr2A 69211754 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 69206058 69211996 5939 1 0.0168378514901499 RFvsST 249825 150487748 150237924 no 28.6626407672518 TraesCS2A01G119300 chr2A_69327942 chr2A 69327942 C C A A 4 synonymous_variant LOW transcript unique_Triplet 69324989 69331058 6070 2 0.0329489291598023 RFvsST 249825 150487748 150237924 no 272.564435137767 TraesCS2A01G119300 chr2A_69325458 chr2A 69325458 A A G G 4 synonymous_variant LOW transcript unique_Triplet 69324989 69331058 6070 2 0.0329489291598023 RFvsST 249825 150487748 150237924 no 272.564435137767 TraesCS2A01G119400 chr2A_69352038 chr2A 69352038 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69352089 69355627 3539 4 0.113026278609777 RFvsST 249825 150487748 150237924 no 61.858313091999 TraesCS2A01G119400 chr2A_69355161 chr2A 69355161 G G T T 4 missense_variant MODERATE transcript unique_Triplet 69352089 69355627 3539 4 0.113026278609777 RFvsST 249825 150487748 150237924 no 61.858313091999 TraesCS2A01G119400 chr2A_69351986 chr2A 69351986 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69352089 69355627 3539 4 0.113026278609777 RFvsST 249825 150487748 150237924 no 61.858313091999 TraesCS2A01G119400 chr2A_69352200 chr2A 69352200 A A G G 4 synonymous_variant LOW transcript unique_Triplet 69352089 69355627 3539 4 0.113026278609777 RFvsST 249825 150487748 150237924 no 61.858313091999 TraesCS2A01G119600 chr2A_70102521 chr2A 70102521 G G C C 4 missense_variant MODERATE transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G119600 chr2A_70104546 chr2A 70104546 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G119600 chr2A_70103971 chr2A 70103971 T T C C 4 missense_variant MODERATE transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G119600 chr2A_70102545 chr2A 70102545 A A G G 4 missense_variant MODERATE transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G119600 chr2A_70102587 chr2A 70102587 C C T T 4 missense_variant MODERATE transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G119600 chr2A_70102142 chr2A 70102142 A A C C 4 synonymous_variant LOW transcript unique_Triplet 70102092 70104376 2285 6 0.262582056892779 RFvsST 249825 150487748 150237924 no 111.069179431623 TraesCS2A01G121100 chr2A_70975380 chr2A 70975380 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 70974650 70977223 2574 4 0.155400155400155 RFvsST 249825 150487748 150237924 no 964.606889436644 TraesCS2A01G121100 chr2A_70974942 chr2A 70974942 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 70974650 70977223 2574 4 0.155400155400155 RFvsST 249825 150487748 150237924 no 964.606889436644 TraesCS2A01G121100 chr2A_70975309 chr2A 70975309 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 70974650 70977223 2574 4 0.155400155400155 RFvsST 249825 150487748 150237924 no 964.606889436644 TraesCS2A01G121100 chr2A_70977061 chr2A 70977061 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 70974650 70977223 2574 4 0.155400155400155 RFvsST 249825 150487748 150237924 no 964.606889436644 TraesCS2A01G122200 chr2A_71624195 chr2A 71624195 C C G G 4 missense_variant MODERATE transcript unique_Triplet 71619472 71625228 5757 1 0.0173701580684384 RFvsST 249825 150487748 150237924 no 141.465885480143 TraesCS2A01G122400 chr2A_71797904 chr2A 71797904 A A G G 4 synonymous_variant LOW transcript non_Triplet 71797599 71798611 1013 3 0.296150049358342 RFvsST 249825 150487748 150237924 no 18.8773897883314 TraesCS2A01G122400 chr2A_71798616 chr2A 71798616 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 71797599 71798611 1013 3 0.296150049358342 RFvsST 249825 150487748 150237924 no 18.8773897883314 TraesCS2A01G122400 chr2A_71797868 chr2A 71797868 T T C C 4 synonymous_variant LOW transcript non_Triplet 71797599 71798611 1013 3 0.296150049358342 RFvsST 249825 150487748 150237924 no 18.8773897883314 TraesCS2A01G123900 chr2A_73170638 chr2A 73170638 G T G T 3 missense_variant MODERATE transcript unique_Triplet 73170478 73175209 4732 4 0.084530853761623 RFvsST 249825 150487748 150237924 no 65.514600440687 TraesCS2A01G123900 chr2A_73170593 chr2A 73170593 C C G G 4 missense_variant MODERATE transcript unique_Triplet 73170478 73175209 4732 4 0.084530853761623 RFvsST 249825 150487748 150237924 no 65.514600440687 TraesCS2A01G123900 chr2A_73170525 chr2A 73170525 G A G A 3 synonymous_variant LOW transcript unique_Triplet 73170478 73175209 4732 4 0.084530853761623 RFvsST 249825 150487748 150237924 no 65.514600440687 TraesCS2A01G123900 chr2A_73173739 chr2A 73173739 T T G G 4 missense_variant MODERATE transcript unique_Triplet 73170478 73175209 4732 4 0.084530853761623 RFvsST 249825 150487748 150237924 no 65.514600440687 TraesCS2A01G124400 chr2A_73283663 chr2A 73283663 G A G A 3 synonymous_variant LOW transcript unique_Triplet 73283016 73284281 1266 1 0.0789889415481833 RFvsST 249825 150487748 150237924 no 863.163527210781 TraesCS2A01G124700 chr2A_73527709 chr2A 73527709 C C A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 73527611 73530307 2697 1 0.0370782350760104 RFvsST 249825 150487748 150237924 no 27.8650086398465 TraesCS2A01G125400 chr2A_74117029 chr2A 74117029 C C A A 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 74116571 74119937 3367 1 0.0297000297000297 RFvsST 249825 150487748 150237924 no 18.3514605189466 TraesCS2A01G125500 chr2A_74136026 chr2A 74136026 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 74136111 74139804 3694 2 0.0541418516513265 RFvsST 249825 150487748 150237924 no 31.0674283646288 TraesCS2A01G125500 chr2A_74136036 chr2A 74136036 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 74136111 74139804 3694 2 0.0541418516513265 RFvsST 249825 150487748 150237924 no 31.0674283646288 TraesCS2A01G125700 chr2A_74164506 chr2A 74164506 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 74162457 74164629 2173 2 0.092038656235619 RFvsST 249825 150487748 150237924 no 129.155630991487 TraesCS2A01G125700 chr2A_74164339 chr2A 74164339 C C T T 4 missense_variant MODERATE transcript unique_Triplet 74162457 74164629 2173 2 0.092038656235619 RFvsST 249825 150487748 150237924 no 129.155630991487 TraesCS2A01G126700 chr2A_74790460 chr2A 74790460 A A G G 4 synonymous_variant LOW transcript unique_Triplet 74788431 74791865 3435 5 0.145560407569141 RFvsST 249825 150487748 150237924 no 40.1172441249097 TraesCS2A01G126700 chr2A_74788542 chr2A 74788542 G G A A 4 synonymous_variant LOW transcript unique_Triplet 74788431 74791865 3435 5 0.145560407569141 RFvsST 249825 150487748 150237924 no 40.1172441249097 TraesCS2A01G126700 chr2A_74789582 chr2A 74789582 G G A A 4 synonymous_variant LOW transcript unique_Triplet 74788431 74791865 3435 5 0.145560407569141 RFvsST 249825 150487748 150237924 no 40.1172441249097 TraesCS2A01G126700 chr2A_74789379 chr2A 74789379 G G A A 4 synonymous_variant LOW transcript unique_Triplet 74788431 74791865 3435 5 0.145560407569141 RFvsST 249825 150487748 150237924 no 40.1172441249097 TraesCS2A01G126700 chr2A_74788549 chr2A 74788549 G G A A 4 missense_variant MODERATE transcript unique_Triplet 74788431 74791865 3435 5 0.145560407569141 RFvsST 249825 150487748 150237924 no 40.1172441249097 TraesCS2A01G126800 chr2A_74877654 chr2A 74877654 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 74873928 74877629 3702 3 0.0810372771474878 RFvsST 249825 150487748 150237924 no 75.2828246009938 TraesCS2A01G126800 chr2A_74877864 chr2A 74877864 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 74873928 74877629 3702 3 0.0810372771474878 RFvsST 249825 150487748 150237924 no 75.2828246009938 TraesCS2A01G126800 chr2A_74875555 chr2A 74875555 A A G G 4 missense_variant MODERATE transcript unique_Triplet 74873928 74877629 3702 3 0.0810372771474878 RFvsST 249825 150487748 150237924 no 75.2828246009938 TraesCS2A01G126900 chr2A_74962211 chr2A 74962211 C C T T 4 missense_variant MODERATE transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G126900 chr2A_74967239 chr2A 74967239 T T C C 4 synonymous_variant LOW transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G126900 chr2A_74960064 chr2A 74960064 T T C C 4 synonymous_variant LOW transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G126900 chr2A_74965685 chr2A 74965685 A A G G 4 synonymous_variant LOW transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G126900 chr2A_74963037 chr2A 74963037 T T C C 4 missense_variant MODERATE transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G126900 chr2A_74968096 chr2A 74968096 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 74959570 74967749 8180 6 0.0733496332518337 RFvsST 249825 150487748 150237924 no 335.963702480415 TraesCS2A01G127200 chr2A_75140132 chr2A 75140132 T T C C 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75137607 chr2A 75137607 T T C C 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75141334 chr2A 75141334 A A G G 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75140955 chr2A 75140955 G G A A 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75137645 chr2A 75137645 A A G G 4 synonymous_variant LOW transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75135368 chr2A 75135368 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75140788 chr2A 75140788 T T C C 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127200 chr2A_75140932 chr2A 75140932 G G C C 4 missense_variant MODERATE transcript unique_Triplet 75137501 75142281 4781 8 0.167329010667224 RFvsST 249825 150487748 150237924 no 319.671046215385 TraesCS2A01G127300 chr2A_75292040 chr2A 75292040 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 75287720 75292254 4535 1 0.0220507166482911 RFvsST 249825 150487748 150237924 no 51.5691161246347 TraesCS2A01G128100 chr2A_75650357 chr2A 75650357 G G A A 4 missense_variant MODERATE transcript non_Triplet 75650314 75654060 3747 4 0.106752068321324 RFvsST 249825 150487748 150237924 no 41.8363465453997 TraesCS2A01G128100 chr2A_75653699 chr2A 75653699 C C G G 4 missense_variant MODERATE transcript non_Triplet 75650314 75654060 3747 4 0.106752068321324 RFvsST 249825 150487748 150237924 no 41.8363465453997 TraesCS2A01G128100 chr2A_75653665 chr2A 75653665 G G A A 4 synonymous_variant LOW transcript non_Triplet 75650314 75654060 3747 4 0.106752068321324 RFvsST 249825 150487748 150237924 no 41.8363465453997 TraesCS2A01G128100 chr2A_75650225 chr2A 75650225 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 75650314 75654060 3747 4 0.106752068321324 RFvsST 249825 150487748 150237924 no 41.8363465453997 TraesCS2A01G128400 chr2A_76343532 chr2A 76343532 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 76344128 76359515 15388 4 0.0259942812581232 RFvsST 249825 150487748 150237924 no 387.738041560674 TraesCS2A01G128400 chr2A_76355974 chr2A 76355974 A A T T 4 missense_variant MODERATE transcript unique_Triplet 76344128 76359515 15388 4 0.0259942812581232 RFvsST 249825 150487748 150237924 no 387.738041560674 TraesCS2A01G128400 chr2A_76357242 chr2A 76357242 G G C C 4 missense_variant MODERATE transcript unique_Triplet 76344128 76359515 15388 4 0.0259942812581232 RFvsST 249825 150487748 150237924 no 387.738041560674 TraesCS2A01G128400 chr2A_76344553 chr2A 76344553 T T G G 4 missense_variant MODERATE transcript unique_Triplet 76344128 76359515 15388 4 0.0259942812581232 RFvsST 249825 150487748 150237924 no 387.738041560674 TraesCS2A01G128600 chr2A_77162836 chr2A 77162836 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 77155403 77159782 4380 1 0.0228310502283105 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G128700 chr2A_77165309 chr2A 77165309 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 77165744 77170545 4802 3 0.0624739691795085 RFvsST 249825 150487748 150237924 no 9.74787387303408 TraesCS2A01G128700 chr2A_77165481 chr2A 77165481 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 77165744 77170545 4802 3 0.0624739691795085 RFvsST 249825 150487748 150237924 no 9.74787387303408 TraesCS2A01G128700 chr2A_77165454 chr2A 77165454 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 77165744 77170545 4802 3 0.0624739691795085 RFvsST 249825 150487748 150237924 no 9.74787387303408 TraesCS2A01G128800 chr2A_77195664 chr2A 77195664 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 77194871 77195482 612 3 0.490196078431373 RFvsST 249825 150487748 150237924 no 79.0920315872231 TraesCS2A01G128800 chr2A_77195323 chr2A 77195323 T T C C 4 synonymous_variant LOW transcript unique_Triplet 77194871 77195482 612 3 0.490196078431373 RFvsST 249825 150487748 150237924 no 79.0920315872231 TraesCS2A01G128800 chr2A_77194862 chr2A 77194862 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 77194871 77195482 612 3 0.490196078431373 RFvsST 249825 150487748 150237924 no 79.0920315872231 TraesCS2A01G129300 chr2A_77335035 chr2A 77335035 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 77335703 77338398 2696 4 0.148367952522255 RFvsST 249825 150487748 150237924 no 31.7774939894314 TraesCS2A01G129300 chr2A_77337774 chr2A 77337774 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 77335703 77338398 2696 4 0.148367952522255 RFvsST 249825 150487748 150237924 no 31.7774939894314 TraesCS2A01G129300 chr2A_77336058 chr2A 77336058 G G A A 4 missense_variant MODERATE transcript non_Triplet 77335703 77338398 2696 4 0.148367952522255 RFvsST 249825 150487748 150237924 no 31.7774939894314 TraesCS2A01G129300 chr2A_77335836 chr2A 77335836 T T C C 4 missense_variant MODERATE transcript non_Triplet 77335703 77338398 2696 4 0.148367952522255 RFvsST 249825 150487748 150237924 no 31.7774939894314 TraesCS2A01G129400 chr2A_77338113 chr2A 77338113 G G A A 4 synonymous_variant LOW transcript non_Triplet 77337850 77338636 787 1 0.127064803049555 RFvsST 249825 150487748 150237924 no 22.8886144872516 TraesCS2A01G129600 chr2A_77533223 chr2A 77533223 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 77528437 77533149 4713 1 0.0212179079142796 RFvsST 249825 150487748 150237924 no 1072.33107090746 TraesCS2A01G130200 chr2A_77938621 chr2A 77938621 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 77938632 77941497 2866 1 0.0348918353105373 RFvsST 249825 150487748 150237924 no 412.580052533222 TraesCS2A01G130600 chr2A_78345945 chr2A 78345945 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 78329217 78345596 16380 1 0.00610500610500611 RFvsST 249825 150487748 150237924 no 17085.6666055642 TraesCS2A01G131300 chr2A_78804048 chr2A 78804048 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 78804120 78806552 2433 2 0.082203041512536 RFvsST 249825 150487748 150237924 no 27.7848362108334 TraesCS2A01G131300 chr2A_78804224 chr2A 78804224 T T C C 4 missense_variant MODERATE transcript unique_Triplet 78804120 78806552 2433 2 0.082203041512536 RFvsST 249825 150487748 150237924 no 27.7848362108334 TraesCS2A01G131400 chr2A_78844411 chr2A 78844411 G G A A 4 missense_variant MODERATE transcript unique_Triplet 78844055 78854379 10325 2 0.0193704600484261 RFvsST 249825 150487748 150237924 no 138.01065095229 TraesCS2A01G131400 chr2A_78845930 chr2A 78845930 G G A A 4 missense_variant MODERATE transcript unique_Triplet 78844055 78854379 10325 2 0.0193704600484261 RFvsST 249825 150487748 150237924 no 138.01065095229 TraesCS2A01G131800 chr2A_79205224 chr2A 79205224 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 79202270 79205054 2785 2 0.0718132854578097 RFvsST 249825 150487748 150237924 no 92.7246918028283 TraesCS2A01G131800 chr2A_79205187 chr2A 79205187 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 79202270 79205054 2785 2 0.0718132854578097 RFvsST 249825 150487748 150237924 no 92.7246918028283 TraesCS2A01G131900 chr2A_79207500 chr2A 79207500 C C A A 4 missense_variant MODERATE transcript non_Triplet 79206725 79208990 2266 1 0.0441306266548985 RFvsST 249825 150487748 150237924 no 27.5031213419748 TraesCS2A01G132100 chr2A_79309668 chr2A 79309668 G A G A 3 missense_variant MODERATE transcript unique_Triplet 79305676 79309951 4276 2 0.0467726847521048 RFvsST 249825 150487748 150237924 no 123.934782114755 TraesCS2A01G132100 chr2A_79310418 chr2A 79310418 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 79305676 79309951 4276 2 0.0467726847521048 RFvsST 249825 150487748 150237924 no 123.934782114755 TraesCS2A01G132200 chr2A_79314999 chr2A 79314999 A A T T 4 intron_variant MODIFIER transcript non_Triplet 79314861 79322810 7950 2 0.0251572327044025 RFvsST 249825 150487748 150237924 no 942.542326834573 TraesCS2A01G132200 chr2A_79319091 chr2A 79319091 G G A A 4 intron_variant MODIFIER transcript non_Triplet 79314861 79322810 7950 2 0.0251572327044025 RFvsST 249825 150487748 150237924 no 942.542326834573 TraesCS2A01G133800 chr2A_80477801 chr2A 80477801 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 80480577 80483190 2614 1 0.0382555470543229 RFvsST 249825 150487748 150237924 no 22.1833739873296 TraesCS2A01G133900 chr2A_80538540 chr2A 80538540 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 80536558 80537801 1244 4 0.321543408360129 RFvsST 249825 150487748 150237924 no 2670.50505681858 TraesCS2A01G133900 chr2A_80540379 chr2A 80540379 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 80536558 80537801 1244 4 0.321543408360129 RFvsST 249825 150487748 150237924 no 2670.50505681858 TraesCS2A01G133900 chr2A_80540393 chr2A 80540393 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 80536558 80537801 1244 4 0.321543408360129 RFvsST 249825 150487748 150237924 no 2670.50505681858 TraesCS2A01G133900 chr2A_80540525 chr2A 80540525 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 80536558 80537801 1244 4 0.321543408360129 RFvsST 249825 150487748 150237924 no 2670.50505681858 TraesCS2A01G134000 chr2A_80592925 chr2A 80592925 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 80587526 80592692 5167 2 0.0387071801819237 RFvsST 249825 150487748 150237924 no 47203.6032662372 TraesCS2A01G134000 chr2A_80592911 chr2A 80592911 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 80587526 80592692 5167 2 0.0387071801819237 RFvsST 249825 150487748 150237924 no 47203.6032662372 TraesCS2A01G134900 chr2A_81091469 chr2A 81091469 G G A A 4 synonymous_variant LOW transcript unique_Triplet 81091221 81099992 8772 2 0.0227998176014592 RFvsST 249825 150487748 150237924 no 103.916228957724 TraesCS2A01G134900 chr2A_81095862 chr2A 81095862 A A G G 4 synonymous_variant LOW transcript unique_Triplet 81091221 81099992 8772 2 0.0227998176014592 RFvsST 249825 150487748 150237924 no 103.916228957724 TraesCS2A01G135600 chr2A_81760059 chr2A 81760059 C C T T 4 missense_variant MODERATE transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81759502 chr2A 81759502 C C T T 4 missense_variant MODERATE transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81758163 chr2A 81758163 A A G G 4 missense_variant MODERATE transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81758976 chr2A 81758976 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81758978 chr2A 81758978 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81752187 chr2A 81752187 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81759706 chr2A 81759706 A A G G 4 missense_variant MODERATE transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81756682 chr2A 81756682 A A G G 4 synonymous_variant LOW transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81754041 chr2A 81754041 G G C C 4 missense_variant MODERATE transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135600 chr2A_81753399 chr2A 81753399 G G A A 4 synonymous_variant LOW transcript unique_Triplet 81752218 81764443 12226 10 0.0817929003762473 RFvsST 249825 150487748 150237924 no 453.935076927011 TraesCS2A01G135700 chr2A_81767054 chr2A 81767054 T T A A 4 missense_variant MODERATE transcript unique_Triplet 81765795 81769348 3554 1 0.028137310073157 RFvsST 249825 150487748 150237924 no 10.2037202504745 TraesCS2A01G135800 chr2A_81790028 chr2A 81790028 C G C G 3 synonymous_variant LOW transcript unique_Triplet 81784264 81790220 5957 2 0.0335739466174249 RFvsST 249825 150487748 150237924 no 447.166224588728 TraesCS2A01G135800 chr2A_81786966 chr2A 81786966 A A G G 4 synonymous_variant LOW transcript unique_Triplet 81784264 81790220 5957 2 0.0335739466174249 RFvsST 249825 150487748 150237924 no 447.166224588728 TraesCS2A01G136700 chr2A_82350151 chr2A 82350151 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 82345445 82349457 4013 5 0.124595066035385 RFvsST 249825 150487748 150237924 no 52.03470168084 TraesCS2A01G136700 chr2A_82350146 chr2A 82350146 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 82345445 82349457 4013 5 0.124595066035385 RFvsST 249825 150487748 150237924 no 52.03470168084 TraesCS2A01G136700 chr2A_82350092 chr2A 82350092 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 82345445 82349457 4013 5 0.124595066035385 RFvsST 249825 150487748 150237924 no 52.03470168084 TraesCS2A01G136700 chr2A_82350055 chr2A 82350055 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 82345445 82349457 4013 5 0.124595066035385 RFvsST 249825 150487748 150237924 no 52.03470168084 TraesCS2A01G136700 chr2A_82345630 chr2A 82345630 A A G G 4 missense_variant MODERATE transcript non_Triplet 82345445 82349457 4013 5 0.124595066035385 RFvsST 249825 150487748 150237924 no 52.03470168084 TraesCS2A01G136800 chr2A_82350381 chr2A 82350381 C C T T 4 synonymous_variant LOW transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82350484 chr2A 82350484 T T A A 4 missense_variant MODERATE transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82350302 chr2A 82350302 C T C T 3 missense_variant MODERATE transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82350485 chr2A 82350485 C C T T 4 missense_variant MODERATE transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82351378 chr2A 82351378 C A C A 3 missense_variant MODERATE transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82350169 chr2A 82350169 C C G G 4 missense_variant MODERATE transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G136800 chr2A_82351416 chr2A 82351416 G T G T 3 synonymous_variant LOW transcript unique_Triplet 82350162 82354771 4610 7 0.151843817787419 RFvsST 249825 150487748 150237924 no 168.449808816678 TraesCS2A01G137700 chr2A_83639787 chr2A 83639787 G G A A 4 synonymous_variant LOW transcript non_Triplet 83639556 83647733 8178 2 0.0244558571777941 RFvsST 249825 150487748 150237924 no 294.606275269011 TraesCS2A01G137700 chr2A_83640278 chr2A 83640278 A C A C 3 missense_variant MODERATE transcript non_Triplet 83639556 83647733 8178 2 0.0244558571777941 RFvsST 249825 150487748 150237924 no 294.606275269011 TraesCS2A01G138100 chr2A_83823314 chr2A 83823314 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 83819202 83824250 5049 1 0.0198059021588433 RFvsST 249825 150487748 150237924 no 27.4868566742929 TraesCS2A01G138300 chr2A_83828919 chr2A 83828919 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 83828667 83830320 1654 1 0.060459492140266 RFvsST 249825 150487748 150237924 no 130.623608752806 TraesCS2A01G138700 chr2A_83927350 chr2A 83927350 C T C T 3 synonymous_variant LOW transcript unique_Triplet 83927116 83940745 13630 4 0.0293470286133529 RFvsST 249825 150487748 150237924 no 37.6349103647229 TraesCS2A01G138700 chr2A_83927470 chr2A 83927470 G G A A 4 synonymous_variant LOW transcript unique_Triplet 83927116 83940745 13630 4 0.0293470286133529 RFvsST 249825 150487748 150237924 no 37.6349103647229 TraesCS2A01G138700 chr2A_83927708 chr2A 83927708 T C T C 3 synonymous_variant LOW transcript unique_Triplet 83927116 83940745 13630 4 0.0293470286133529 RFvsST 249825 150487748 150237924 no 37.6349103647229 TraesCS2A01G138700 chr2A_83928763 chr2A 83928763 A G A G 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 83927116 83940745 13630 4 0.0293470286133529 RFvsST 249825 150487748 150237924 no 37.6349103647229 TraesCS2A01G139100 chr2A_84552405 chr2A 84552405 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 84543712 84549195 5484 1 0.0182348650619985 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G139200 chr2A_84552558 chr2A 84552558 G G A A 4 missense_variant MODERATE transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G139200 chr2A_84554907 chr2A 84554907 G A G A 3 synonymous_variant LOW transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G139200 chr2A_84553144 chr2A 84553144 G G A A 4 synonymous_variant LOW transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G139200 chr2A_84554059 chr2A 84554059 C C A A 4 missense_variant MODERATE transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G139200 chr2A_84553993 chr2A 84553993 G G A A 4 synonymous_variant LOW transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G139200 chr2A_84553943 chr2A 84553943 G A G A 3 missense_variant MODERATE transcript non_Triplet 84552500 84555098 2599 6 0.230858022316276 RFvsST 249825 150487748 150237924 no 94.1345018768803 TraesCS2A01G140000 chr2A_84979032 chr2A 84979032 A C A C 3 synonymous_variant LOW transcript unique_Triplet 84973342 84979572 6231 1 0.0160487883164821 RFvsST 249825 150487748 150237924 no 7.55328766104939 TraesCS2A01G140100 chr2A_85288898 chr2A 85288898 T C T C 3 synonymous_variant LOW transcript unique_Triplet 85287834 85289174 1341 5 0.372856077554064 RFvsST 249825 150487748 150237924 no 331.756468485019 TraesCS2A01G140100 chr2A_85289098 chr2A 85289098 A G A G 3 missense_variant MODERATE transcript unique_Triplet 85287834 85289174 1341 5 0.372856077554064 RFvsST 249825 150487748 150237924 no 331.756468485019 TraesCS2A01G140100 chr2A_85288397 chr2A 85288397 G T G T 3 missense_variant MODERATE transcript unique_Triplet 85287834 85289174 1341 5 0.372856077554064 RFvsST 249825 150487748 150237924 no 331.756468485019 TraesCS2A01G140100 chr2A_85288282 chr2A 85288282 T A T A 3 missense_variant MODERATE transcript unique_Triplet 85287834 85289174 1341 5 0.372856077554064 RFvsST 249825 150487748 150237924 no 331.756468485019 TraesCS2A01G140100 chr2A_85288961 chr2A 85288961 T C T C 3 synonymous_variant LOW transcript unique_Triplet 85287834 85289174 1341 5 0.372856077554064 RFvsST 249825 150487748 150237924 no 331.756468485019 TraesCS2A01G140600 chr2A_85612485 chr2A 85612485 C C T T 4 synonymous_variant LOW transcript non_Triplet 85612213 85613595 1383 1 0.0723065798987708 RFvsST 249825 150487748 150237924 no 27.4175708675759 TraesCS2A01G141100 chr2A_86383697 chr2A 86383697 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 86379526 86384103 4578 4 0.0873743993010048 RFvsST 249825 150487748 150237924 no 78.8449000096008 TraesCS2A01G141100 chr2A_86383043 chr2A 86383043 A A G G 4 synonymous_variant LOW transcript unique_Triplet 86379526 86384103 4578 4 0.0873743993010048 RFvsST 249825 150487748 150237924 no 78.8449000096008 TraesCS2A01G141100 chr2A_86382758 chr2A 86382758 G A G A 3 missense_variant MODERATE transcript unique_Triplet 86379526 86384103 4578 4 0.0873743993010048 RFvsST 249825 150487748 150237924 no 78.8449000096008 TraesCS2A01G141100 chr2A_86382959 chr2A 86382959 C C T T 4 missense_variant MODERATE transcript unique_Triplet 86379526 86384103 4578 4 0.0873743993010048 RFvsST 249825 150487748 150237924 no 78.8449000096008 TraesCS2A01G141800 chr2A_87453851 chr2A 87453851 T G T G 3 synonymous_variant LOW transcript unique_Triplet 87434167 87456477 22311 2 0.00896418806866568 RFvsST 249825 150487748 150237924 no 715.197945958356 TraesCS2A01G141800 chr2A_87450377 chr2A 87450377 T G T G 3 missense_variant MODERATE transcript unique_Triplet 87434167 87456477 22311 2 0.00896418806866568 RFvsST 249825 150487748 150237924 no 715.197945958356 TraesCS2A01G142200 chr2A_87856696 chr2A 87856696 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 87851013 87855398 4386 1 0.0227998176014592 RFvsST 249825 150487748 150237924 no 68.5222644482534 TraesCS2A01G142300 chr2A_87856940 chr2A 87856940 G A G A 3 missense_variant MODERATE transcript unique_Triplet 87856893 87861590 4698 4 0.0851426138782461 RFvsST 249825 150487748 150237924 no 245.820211501483 TraesCS2A01G142300 chr2A_87857405 chr2A 87857405 C C T T 4 missense_variant MODERATE transcript unique_Triplet 87856893 87861590 4698 4 0.0851426138782461 RFvsST 249825 150487748 150237924 no 245.820211501483 TraesCS2A01G142300 chr2A_87859138 chr2A 87859138 A T A T 3 missense_variant MODERATE transcript unique_Triplet 87856893 87861590 4698 4 0.0851426138782461 RFvsST 249825 150487748 150237924 no 245.820211501483 TraesCS2A01G142300 chr2A_87857317 chr2A 87857317 C C G G 4 missense_variant MODERATE transcript unique_Triplet 87856893 87861590 4698 4 0.0851426138782461 RFvsST 249825 150487748 150237924 no 245.820211501483 TraesCS2A01G142400 chr2A_87878244 chr2A 87878244 C C T T 4 synonymous_variant LOW transcript unique_Triplet 87876702 87882095 5394 5 0.092695587690026 RFvsST 249825 150487748 150237924 no 176.142323136203 TraesCS2A01G142400 chr2A_87877212 chr2A 87877212 T T C C 4 synonymous_variant LOW transcript unique_Triplet 87876702 87882095 5394 5 0.092695587690026 RFvsST 249825 150487748 150237924 no 176.142323136203 TraesCS2A01G142400 chr2A_87881201 chr2A 87881201 G T G T 3 missense_variant MODERATE transcript unique_Triplet 87876702 87882095 5394 5 0.092695587690026 RFvsST 249825 150487748 150237924 no 176.142323136203 TraesCS2A01G142400 chr2A_87878923 chr2A 87878923 A T A T 3 synonymous_variant LOW transcript unique_Triplet 87876702 87882095 5394 5 0.092695587690026 RFvsST 249825 150487748 150237924 no 176.142323136203 TraesCS2A01G142400 chr2A_87881665 chr2A 87881665 C C T T 4 synonymous_variant LOW transcript unique_Triplet 87876702 87882095 5394 5 0.092695587690026 RFvsST 249825 150487748 150237924 no 176.142323136203 TraesCS2A01G142500 chr2A_87882495 chr2A 87882495 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 87882265 87885791 3527 1 0.0283527076835838 RFvsST 249825 150487748 150237924 no 45.6711690361251 TraesCS2A01G142700 chr2A_87891249 chr2A 87891249 C C A A 4 missense_variant MODERATE transcript unique_Triplet 87890743 87892630 1888 1 0.0529661016949153 RFvsST 249825 150487748 150237924 no 133.699165285757 TraesCS2A01G142800 chr2A_88012614 chr2A 88012614 T T G G 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88011811 chr2A 88011811 C C T T 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012615 chr2A 88012615 G G C C 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012806 chr2A 88012806 C C G G 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012443 chr2A 88012443 T T C C 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88009527 chr2A 88009527 T T G G 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012803 chr2A 88012803 C C A A 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012788 chr2A 88012788 G G C C 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88016047 chr2A 88016047 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012454 chr2A 88012454 T T G G 4 synonymous_variant LOW transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88009512 chr2A 88009512 C C G G 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88011826 chr2A 88011826 C C A A 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142800 chr2A_88012201 chr2A 88012201 T T C C 4 missense_variant MODERATE transcript unique_Triplet 88009109 88012911 3803 13 0.341835393110702 RFvsST 249825 150487748 150237924 no 375.458379142437 TraesCS2A01G142900 chr2A_88015902 chr2A 88015902 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 88013208 88016007 2800 1 0.0357142857142857 RFvsST 249825 150487748 150237924 no 126.136747404202 TraesCS2A01G143200 chr2A_88281194 chr2A 88281194 C C A A 4 missense_variant MODERATE transcript non_Triplet 88280830 88281891 1062 2 0.188323917137476 RFvsST 249825 150487748 150237924 no 110.037414062616 TraesCS2A01G143200 chr2A_88281772 chr2A 88281772 G G A A 4 missense_variant MODERATE transcript non_Triplet 88280830 88281891 1062 2 0.188323917137476 RFvsST 249825 150487748 150237924 no 110.037414062616 TraesCS2A01G143300 chr2A_88287997 chr2A 88287997 C C T T 4 missense_variant MODERATE transcript non_Triplet 88287180 88288217 1038 1 0.0963391136801541 RFvsST 249825 150487748 150237924 no 100.642163990659 TraesCS2A01G143400 chr2A_88295117 chr2A 88295117 G G C C 4 missense_variant MODERATE transcript unique_Triplet 88295052 88297259 2208 1 0.0452898550724638 RFvsST 249825 150487748 150237924 no 45.023541397685 TraesCS2A01G143500 chr2A_88299876 chr2A 88299876 A A C C 4 missense_variant MODERATE transcript non_Triplet 88299453 88300529 1077 1 0.0928505106778087 RFvsST 249825 150487748 150237924 no 75.3360746332598 TraesCS2A01G143700 chr2A_88671196 chr2A 88671196 G G A A 4 synonymous_variant LOW transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88669824 chr2A 88669824 T T G G 4 missense_variant MODERATE transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88662059 chr2A 88662059 A A G G 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88661951 chr2A 88661951 A A C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88662270 chr2A 88662270 T T C C 4 missense_variant MODERATE transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88671494 chr2A 88671494 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143700 chr2A_88671491 chr2A 88671491 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 88661909 88671592 9684 7 0.0722841800908715 RFvsST 249825 150487748 150237924 no 135.836202495989 TraesCS2A01G143800 chr2A_88738144 chr2A 88738144 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88735514 chr2A 88735514 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88741126 chr2A 88741126 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88740227 chr2A 88740227 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88740873 chr2A 88740873 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736689 chr2A 88736689 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88737657 chr2A 88737657 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736682 chr2A 88736682 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88742473 chr2A 88742473 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88740756 chr2A 88740756 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88741408 chr2A 88741408 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88737137 chr2A 88737137 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88735446 chr2A 88735446 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88734853 chr2A 88734853 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88735851 chr2A 88735851 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88735487 chr2A 88735487 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88737796 chr2A 88737796 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88737910 chr2A 88737910 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736853 chr2A 88736853 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736571 chr2A 88736571 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736675 chr2A 88736675 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88737109 chr2A 88737109 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736244 chr2A 88736244 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88734779 chr2A 88734779 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88734530 chr2A 88734530 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88736412 chr2A 88736412 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G143800 chr2A_88735731 chr2A 88735731 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 88739209 88739738 530 27 5.09433962264151 RFvsST 249825 150487748 150237924 no 40.2315291403548 TraesCS2A01G144200 chr2A_89121086 chr2A 89121086 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 89118331 89120946 2616 1 0.0382262996941896 RFvsST 249825 150487748 150237924 no 135.380566757456 TraesCS2A01G144400 chr2A_89166307 chr2A 89166307 C C G G 4 missense_variant MODERATE transcript unique_Triplet 89160353 89166402 6050 1 0.0165289256198347 RFvsST 249825 150487748 150237924 no 73.1749256731137 TraesCS2A01G144800 chr2A_89766104 chr2A 89766104 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 89765790 89769362 3573 4 0.111950741673664 RFvsST 249825 150487748 150237924 no 496.982732288177 TraesCS2A01G144800 chr2A_89766078 chr2A 89766078 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 89765790 89769362 3573 4 0.111950741673664 RFvsST 249825 150487748 150237924 no 496.982732288177 TraesCS2A01G144800 chr2A_89766105 chr2A 89766105 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 89765790 89769362 3573 4 0.111950741673664 RFvsST 249825 150487748 150237924 no 496.982732288177 TraesCS2A01G144800 chr2A_89768197 chr2A 89768197 C C T T 4 missense_variant MODERATE transcript unique_Triplet 89765790 89769362 3573 4 0.111950741673664 RFvsST 249825 150487748 150237924 no 496.982732288177 TraesCS2A01G145500 chr2A_90522094 chr2A 90522094 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 90522246 90525290 3045 1 0.0328407224958949 RFvsST 249825 150487748 150237924 no 42.5549573193335 TraesCS2A01G145700 chr2A_90593761 chr2A 90593761 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 90589489 90593587 4099 1 0.0243961941937058 RFvsST 249825 150487748 150237924 no 8.14706056609506 TraesCS2A01G145900 chr2A_90688839 chr2A 90688839 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 90688898 90690002 1105 1 0.0904977375565611 RFvsST 249825 150487748 150237924 no 1999.85516251013 TraesCS2A01G146100 chr2A_90740350 chr2A 90740350 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 90742749 90746649 3901 1 0.0256344527044348 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G146200 chr2A_90758986 chr2A 90758986 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 90759365 90763964 4600 2 0.0434782608695652 RFvsST 249825 150487748 150237924 no 192.819592651086 TraesCS2A01G146200 chr2A_90763859 chr2A 90763859 T C T C 3 synonymous_variant LOW transcript unique_Triplet 90759365 90763964 4600 2 0.0434782608695652 RFvsST 249825 150487748 150237924 no 192.819592651086 TraesCS2A01G146300 chr2A_90764114 chr2A 90764114 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 90765969 90766613 645 2 0.310077519379845 RFvsST 249825 150487748 150237924 no 6.58638605965633 TraesCS2A01G146300 chr2A_90764063 chr2A 90764063 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 90765969 90766613 645 2 0.310077519379845 RFvsST 249825 150487748 150237924 no 6.58638605965633 TraesCS2A01G146700 chr2A_92332083 chr2A 92332083 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 92329832 92330598 767 1 0.130378096479791 RFvsST 249825 150487748 150237924 no 17.8319441038833 TraesCS2A01G146800 chr2A_92339563 chr2A 92339563 T C T C 3 missense_variant MODERATE transcript unique_Triplet 92336369 92340470 4102 1 0.0243783520234032 RFvsST 249825 150487748 150237924 no 698.394972333655 TraesCS2A01G147400 chr2A_93938368 chr2A 93938368 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93936165 93938259 2095 2 0.0954653937947494 RFvsST 249825 150487748 150237924 no 277.391773157057 TraesCS2A01G147400 chr2A_93938393 chr2A 93938393 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93936165 93938259 2095 2 0.0954653937947494 RFvsST 249825 150487748 150237924 no 277.391773157057 TraesCS2A01G147500 chr2A_94003217 chr2A 94003217 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 94001342 94003211 1870 1 0.053475935828877 RFvsST 249825 150487748 150237924 no 692.509505205049 TraesCS2A01G149200 chr2A_95993511 chr2A 95993511 C T C T 3 synonymous_variant LOW transcript unique_Triplet 95991811 95995098 3288 1 0.0304136253041363 RFvsST 249825 150487748 150237924 no 241.938780664929 TraesCS2A01G150000 chr2A_97841573 chr2A 97841573 T G T G 3 intron_variant MODIFIER transcript unique_Triplet 97841114 97844513 3400 2 0.0588235294117647 RFvsST 249825 150487748 150237924 no 1617.34628552051 TraesCS2A01G150000 chr2A_97841557 chr2A 97841557 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 97841114 97844513 3400 2 0.0588235294117647 RFvsST 249825 150487748 150237924 no 1617.34628552051 TraesCS2A01G150100 chr2A_97845435 chr2A 97845435 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 97847577 97849614 2038 2 0.098135426889107 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G150100 chr2A_97844856 chr2A 97844856 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 97847577 97849614 2038 2 0.098135426889107 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G150300 chr2A_98123003 chr2A 98123003 T C T C 3 missense_variant MODERATE transcript non_Triplet 98120360 98123693 3334 2 0.0599880023995201 RFvsST 249825 150487748 150237924 no 97.2484988521278 TraesCS2A01G150300 chr2A_98124074 chr2A 98124074 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 98120360 98123693 3334 2 0.0599880023995201 RFvsST 249825 150487748 150237924 no 97.2484988521278 TraesCS2A01G150600 chr2A_98140705 chr2A 98140705 T C T C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 98139462 98143874 4413 3 0.0679809653297077 RFvsST 249825 150487748 150237924 no 8.98433616131208 TraesCS2A01G150600 chr2A_98140923 chr2A 98140923 A G A G 3 synonymous_variant LOW transcript unique_Triplet 98139462 98143874 4413 3 0.0679809653297077 RFvsST 249825 150487748 150237924 no 8.98433616131208 TraesCS2A01G150600 chr2A_98140172 chr2A 98140172 C A C A 3 synonymous_variant LOW transcript unique_Triplet 98139462 98143874 4413 3 0.0679809653297077 RFvsST 249825 150487748 150237924 no 8.98433616131208 TraesCS2A01G151300 chr2A_99152629 chr2A 99152629 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 99148821 99150341 1521 2 0.131492439184747 RFvsST 249825 150487748 150237924 no 1.41356882814367 TraesCS2A01G151300 chr2A_99150020 chr2A 99150020 A C A C 3 missense_variant MODERATE transcript non_Triplet 99148821 99150341 1521 2 0.131492439184747 RFvsST 249825 150487748 150237924 no 1.41356882814367 TraesCS2A01G151400 chr2A_99148609 chr2A 99148609 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 99151707 99152193 487 1 0.205338809034908 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G152300 chr2A_100631249 chr2A 100631249 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 100627134 100628992 1859 1 0.0537923614846692 RFvsST 249825 150487748 150237924 no No_match TraesCS2A01G152400 chr2A_100631323 chr2A 100631323 A G A G 3 missense_variant MODERATE transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100632993 chr2A 100632993 C G C G 3 synonymous_variant LOW transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100631733 chr2A 100631733 G A G A 3 synonymous_variant LOW transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100632279 chr2A 100632279 A G A G 3 synonymous_variant LOW transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100631436 chr2A 100631436 A G A G 3 synonymous_variant LOW transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100632744 chr2A 100632744 T C T C 3 missense_variant MODERATE transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100631415 chr2A 100631415 A G A G 3 synonymous_variant LOW transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152400 chr2A_100632699 chr2A 100632699 T C T C 3 missense_variant MODERATE transcript non_Triplet 100631313 100633157 1845 8 0.43360433604336 RFvsST 249825 150487748 150237924 no 403.587628084794 TraesCS2A01G152700 chr2A_100825416 chr2A 100825416 C T C T 3 synonymous_variant LOW transcript unique_Triplet 100824953 100826650 1698 2 0.117785630153121 RFvsST 249825 150487748 150237924 no 89.3426156124707 TraesCS2A01G152700 chr2A_100825061 chr2A 100825061 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 100824953 100826650 1698 2 0.117785630153121 RFvsST 249825 150487748 150237924 no 89.3426156124707 TraesCS2A01G153300 chr2A_101382929 chr2A 101382929 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 101377559 101379462 1904 2 0.105042016806723 RFvsST 249825 150487748 150237924 no 18.1979340855594 TraesCS2A01G153300 chr2A_101378539 chr2A 101378539 G A G A 3 missense_variant MODERATE transcript unique_Triplet 101377559 101379462 1904 2 0.105042016806723 RFvsST 249825 150487748 150237924 no 18.1979340855594 TraesCS2A01G153600 chr2A_101535821 chr2A 101535821 C T C T 3 synonymous_variant LOW transcript unique_Triplet 101535323 101537046 1724 3 0.174013921113689 RFvsST 249825 150487748 150237924 no 127.691925147865 TraesCS2A01G153600 chr2A_101537367 chr2A 101537367 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 101535323 101537046 1724 3 0.174013921113689 RFvsST 249825 150487748 150237924 no 127.691925147865 TraesCS2A01G153600 chr2A_101535237 chr2A 101535237 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 101535323 101537046 1724 3 0.174013921113689 RFvsST 249825 150487748 150237924 no 127.691925147865 TraesCS2A01G153700 chr2A_101695110 chr2A 101695110 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 101695271 101699712 4442 1 0.0225123818099955 RFvsST 249825 150487748 150237924 no 58.3435562137917 TraesCS2A01G154100 chr2A_101845507 chr2A 101845507 T G T G 3 synonymous_variant LOW transcript unique_Triplet 101845448 101845853 406 3 0.738916256157635 RFvsST 249825 150487748 150237924 no 111.86602090813 TraesCS2A01G154100 chr2A_101845781 chr2A 101845781 G A G A 3 synonymous_variant LOW transcript unique_Triplet 101845448 101845853 406 3 0.738916256157635 RFvsST 249825 150487748 150237924 no 111.86602090813 TraesCS2A01G154100 chr2A_101846001 chr2A 101846001 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 101845448 101845853 406 3 0.738916256157635 RFvsST 249825 150487748 150237924 no 111.86602090813 TraesCS2A01G154600 chr2A_101992990 chr2A 101992990 T C T C 3 synonymous_variant LOW transcript non_Triplet 101992518 101994586 2069 3 0.14499758337361 RFvsST 249825 150487748 150237924 no 203.32541836007 TraesCS2A01G154600 chr2A_101994229 chr2A 101994229 G A G A 3 synonymous_variant LOW transcript non_Triplet 101992518 101994586 2069 3 0.14499758337361 RFvsST 249825 150487748 150237924 no 203.32541836007 TraesCS2A01G154600 chr2A_101993125 chr2A 101993125 G C G C 3 synonymous_variant LOW transcript non_Triplet 101992518 101994586 2069 3 0.14499758337361 RFvsST 249825 150487748 150237924 no 203.32541836007 TraesCS2A01G222100 chr2A_213062863 chr2A 213062863 A A T T 4 stop_gained HIGH transcript non_Triplet 213062266 213063036 771 1 0.12970168612192 RFvsST 157546290 780714933 623168644 no 21.0441721310113 TraesCS2A01G225000 chr2A_227630501 chr2A 227630501 G G A A 4 missense_variant MODERATE transcript non_Triplet 227630396 227631463 1068 1 0.0936329588014981 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G233400 chr2A_278446355 chr2A 278446355 C C G G 4 missense_variant MODERATE transcript unique_Triplet 278446130 278467718 21589 1 0.00463198851266849 RFvsST 157546290 780714933 623168644 no 29.4955783004561 TraesCS2A01G233700 chr2A_278920008 chr2A 278920008 T T G G 4 missense_variant MODERATE transcript unique_Triplet 278915627 278922740 7114 2 0.0281135788585887 RFvsST 157546290 780714933 623168644 no 231.135023815151 TraesCS2A01G233700 chr2A_278920976 chr2A 278920976 T T C C 4 missense_variant MODERATE transcript unique_Triplet 278915627 278922740 7114 2 0.0281135788585887 RFvsST 157546290 780714933 623168644 no 231.135023815151 TraesCS2A01G236600 chr2A_304980603 chr2A 304980603 G A G A 3 synonymous_variant LOW transcript non_Triplet 304979368 304982589 3222 1 0.0310366232153942 RFvsST 157546290 780714933 623168644 no 131.113623753963 TraesCS2A01G246300 chr2A_360739048 chr2A 360739048 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 360738435 360748181 9747 1 0.0102595670462706 RFvsST 157546290 780714933 623168644 no 508.491433967621 TraesCS2A01G252600 chr2A_384330524 chr2A 384330524 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 384330834 384331321 488 2 0.409836065573771 RFvsST 157546290 780714933 623168644 no 33772.955472182 TraesCS2A01G252600 chr2A_384330400 chr2A 384330400 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 384330834 384331321 488 2 0.409836065573771 RFvsST 157546290 780714933 623168644 no 33772.955472182 TraesCS2A01G258400 chr2A_403884825 chr2A 403884825 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 403881720 403883444 1725 2 0.115942028985507 RFvsST 157546290 780714933 623168644 no 185.725438503227 TraesCS2A01G258400 chr2A_403883737 chr2A 403883737 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 403881720 403883444 1725 2 0.115942028985507 RFvsST 157546290 780714933 623168644 no 185.725438503227 TraesCS2A01G260800 chr2A_410876664 chr2A 410876664 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 410872903 410874058 1156 1 0.0865051903114187 RFvsST 157546290 780714933 623168644 no 33.2448141171962 TraesCS2A01G263600 chr2A_418796518 chr2A 418796518 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 418794759 418795183 425 1 0.235294117647059 RFvsST 157546290 780714933 623168644 no 8.22529053045032 TraesCS2A01G266200 chr2A_423204052 chr2A 423204052 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 423206356 423208708 2353 1 0.0424989375265618 RFvsST 157546290 780714933 623168644 no 44.3421744145097 TraesCS2A01G269000 chr2A_433623803 chr2A 433623803 G C G C 3 missense_variant MODERATE transcript unique_Triplet 433622601 433629484 6884 1 0.0145264381173736 RFvsST 157546290 780714933 623168644 no 82.8907706012598 TraesCS2A01G270900 chr2A_441103698 chr2A 441103698 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 441097923 441107595 9673 1 0.010338054378166 RFvsST 157546290 780714933 623168644 no 16.0265260591211 TraesCS2A01G274900 chr2A_451021103 chr2A 451021103 G A G A 3 missense_variant MODERATE transcript unique_Triplet 451017339 451031365 14027 1 0.00712910814857061 RFvsST 157546290 780714933 623168644 no 26.661841561971 TraesCS2A01G277500 chr2A_459096312 chr2A 459096312 A G A G 3 synonymous_variant LOW transcript non_Triplet 459087185 459096504 9320 1 0.0107296137339056 RFvsST 157546290 780714933 623168644 no 74.9399371384731 TraesCS2A01G278000 chr2A_460907493 chr2A 460907493 G A G A 3 missense_variant MODERATE transcript unique_Triplet 460902432 460908143 5712 1 0.0175070028011204 RFvsST 157546290 780714933 623168644 no 99.8206878292962 TraesCS2A01G280400 chr2A_468496443 chr2A 468496443 C C G G 4 synonymous_variant LOW transcript unique_Triplet 468494975 468497399 2425 1 0.0412371134020619 RFvsST 157546290 780714933 623168644 no 142.248587440657 TraesCS2A01G280700 chr2A_468534473 chr2A 468534473 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 468533381 468536591 3211 1 0.0311429461227032 RFvsST 157546290 780714933 623168644 no 136.760823204967 TraesCS2A01G284700 chr2A_478762268 chr2A 478762268 C G C G 3 missense_variant MODERATE transcript unique_Triplet 478758252 478762800 4549 1 0.021982853374368 RFvsST 157546290 780714933 623168644 no 584.361203005609 TraesCS2A01G286500 chr2A_486209885 chr2A 486209885 T T A A 4 synonymous_variant LOW transcript unique_Triplet 486203878 486213438 9561 1 0.0104591569919464 RFvsST 157546290 780714933 623168644 no 1910.67996210368 TraesCS2A01G289700 chr2A_498104925 chr2A 498104925 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 498098563 498104339 5777 1 0.0173100225030293 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G289800 chr2A_498105407 chr2A 498105407 G A G A 3 synonymous_variant LOW transcript unique_Triplet 498105068 498108703 3636 1 0.0275027502750275 RFvsST 157546290 780714933 623168644 no 89.6241597930714 TraesCS2A01G290000 chr2A_498840516 chr2A 498840516 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 498840377 498841901 1525 2 0.131147540983607 RFvsST 157546290 780714933 623168644 no 185.445388898832 TraesCS2A01G290000 chr2A_498841181 chr2A 498841181 C C T T 4 missense_variant MODERATE transcript non_Triplet 498840377 498841901 1525 2 0.131147540983607 RFvsST 157546290 780714933 623168644 no 185.445388898832 TraesCS2A01G290100 chr2A_499580089 chr2A 499580089 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 499578773 499579865 1093 4 0.365965233302836 RFvsST 157546290 780714933 623168644 no 163.193903060476 TraesCS2A01G290100 chr2A_499579758 chr2A 499579758 C C G G 4 missense_variant MODERATE transcript unique_Triplet 499578773 499579865 1093 4 0.365965233302836 RFvsST 157546290 780714933 623168644 no 163.193903060476 TraesCS2A01G290100 chr2A_499578941 chr2A 499578941 G G A A 4 missense_variant MODERATE transcript unique_Triplet 499578773 499579865 1093 4 0.365965233302836 RFvsST 157546290 780714933 623168644 no 163.193903060476 TraesCS2A01G290100 chr2A_499580142 chr2A 499580142 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 499578773 499579865 1093 4 0.365965233302836 RFvsST 157546290 780714933 623168644 no 163.193903060476 TraesCS2A01G290300 chr2A_500524490 chr2A 500524490 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500524575 500530154 5580 1 0.017921146953405 RFvsST 157546290 780714933 623168644 no 988.831785636516 TraesCS2A01G290400 chr2A_500533946 chr2A 500533946 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500530424 500530818 395 3 0.759493670886076 RFvsST 157546290 780714933 623168644 no 20.1963579998075 TraesCS2A01G290400 chr2A_500535396 chr2A 500535396 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500530424 500530818 395 3 0.759493670886076 RFvsST 157546290 780714933 623168644 no 20.1963579998075 TraesCS2A01G290400 chr2A_500535397 chr2A 500535397 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500530424 500530818 395 3 0.759493670886076 RFvsST 157546290 780714933 623168644 no 20.1963579998075 TraesCS2A01G290900 chr2A_501317366 chr2A 501317366 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501317503 501322799 5297 1 0.0188786105342647 RFvsST 157546290 780714933 623168644 no 124.059871273964 TraesCS2A01G291000 chr2A_501567212 chr2A 501567212 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501567516 501574489 6974 1 0.0143389733295096 RFvsST 157546290 780714933 623168644 no 111.629422551885 TraesCS2A01G291100 chr2A_501849381 chr2A 501849381 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501842796 501847464 4669 3 0.0642535874919683 RFvsST 157546290 780714933 623168644 no 474.028424475778 TraesCS2A01G291100 chr2A_501845587 chr2A 501845587 T T C C 4 missense_variant MODERATE transcript unique_Triplet 501842796 501847464 4669 3 0.0642535874919683 RFvsST 157546290 780714933 623168644 no 474.028424475778 TraesCS2A01G291100 chr2A_501845191 chr2A 501845191 C C T T 4 synonymous_variant LOW transcript unique_Triplet 501842796 501847464 4669 3 0.0642535874919683 RFvsST 157546290 780714933 623168644 no 474.028424475778 TraesCS2A01G291200 chr2A_501853029 chr2A 501853029 C C A A 4 synonymous_variant LOW transcript unique_Triplet 501849546 501853079 3534 1 0.0282965478211658 RFvsST 157546290 780714933 623168644 no 99.5958178715695 TraesCS2A01G291500 chr2A_502335541 chr2A 502335541 G G A A 4 synonymous_variant LOW transcript unique_Triplet 502327430 502335705 8276 1 0.0120831319478009 RFvsST 157546290 780714933 623168644 no 236.911356542631 TraesCS2A01G291700 chr2A_502626586 chr2A 502626586 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 502622299 502625441 3143 1 0.0318167356029271 RFvsST 157546290 780714933 623168644 no 16.0374803214111 TraesCS2A01G292000 chr2A_502934597 chr2A 502934597 G G A A 4 missense_variant MODERATE transcript non_Triplet 502933862 502935106 1245 2 0.160642570281124 RFvsST 157546290 780714933 623168644 no 254.948086308501 TraesCS2A01G292000 chr2A_502934387 chr2A 502934387 C T C T 3 synonymous_variant LOW transcript non_Triplet 502933862 502935106 1245 2 0.160642570281124 RFvsST 157546290 780714933 623168644 no 254.948086308501 TraesCS2A01G292100 chr2A_503005145 chr2A 503005145 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503002939 503006346 3408 4 0.117370892018779 RFvsST 157546290 780714933 623168644 no 215.741185070552 TraesCS2A01G292100 chr2A_503004190 chr2A 503004190 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503002939 503006346 3408 4 0.117370892018779 RFvsST 157546290 780714933 623168644 no 215.741185070552 TraesCS2A01G292100 chr2A_503004946 chr2A 503004946 A G A G 3 missense_variant MODERATE transcript unique_Triplet 503002939 503006346 3408 4 0.117370892018779 RFvsST 157546290 780714933 623168644 no 215.741185070552 TraesCS2A01G292100 chr2A_503005877 chr2A 503005877 A G A G 3 missense_variant MODERATE transcript unique_Triplet 503002939 503006346 3408 4 0.117370892018779 RFvsST 157546290 780714933 623168644 no 215.741185070552 TraesCS2A01G292600 chr2A_504076105 chr2A 504076105 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 504071462 504072463 1002 1 0.0998003992015968 RFvsST 157546290 780714933 623168644 no 25.029592930337 TraesCS2A01G299200 chr2A_514861976 chr2A 514861976 C G C G 3 missense_variant MODERATE transcript non_Triplet 514859768 514862203 2436 1 0.0410509031198686 RFvsST 157546290 780714933 623168644 no 279.686659244041 TraesCS2A01G302000 chr2A_516897026 chr2A 516897026 C C A A 4 missense_variant MODERATE transcript unique_Triplet 516895465 516897811 2347 2 0.0852151682999574 RFvsST 157546290 780714933 623168644 no 77.5438658684202 TraesCS2A01G302000 chr2A_516895523 chr2A 516895523 C G C G 3 missense_variant MODERATE transcript unique_Triplet 516895465 516897811 2347 2 0.0852151682999574 RFvsST 157546290 780714933 623168644 no 77.5438658684202 TraesCS2A01G310900 chr2A_534625870 chr2A 534625870 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 534619367 534623013 3647 1 0.0274197970935015 RFvsST 157546290 780714933 623168644 no 73.3648056686786 TraesCS2A01G316300 chr2A_542386084 chr2A 542386084 G G A A 4 synonymous_variant LOW transcript unique_Triplet 542382862 542390058 7197 1 0.0138946783381965 RFvsST 157546290 780714933 623168644 no 291.468253539827 TraesCS2A01G316400 chr2A_542454724 chr2A 542454724 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 542454914 542460632 5719 1 0.0174855744011191 RFvsST 157546290 780714933 623168644 no 235.23542133862 TraesCS2A01G320700 chr2A_550532737 chr2A 550532737 C C G G 4 missense_variant MODERATE transcript unique_Triplet 550532148 550534796 2649 1 0.0377500943752359 RFvsST 157546290 780714933 623168644 no 300.306586598202 TraesCS2A01G327000 chr2A_558526626 chr2A 558526626 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 558525051 558529660 4610 1 0.0216919739696312 RFvsST 157546290 780714933 623168644 no 703.93192010298 TraesCS2A01G331300 chr2A_564266602 chr2A 564266602 C C A A 4 stop_gained HIGH transcript unique_Triplet 564264128 564266609 2482 4 0.16116035455278 RFvsST 157546290 780714933 623168644 no 33.1033798778129 TraesCS2A01G331300 chr2A_564266678 chr2A 564266678 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 564264128 564266609 2482 4 0.16116035455278 RFvsST 157546290 780714933 623168644 no 33.1033798778129 TraesCS2A01G331300 chr2A_564265261 chr2A 564265261 A A G G 4 missense_variant MODERATE transcript unique_Triplet 564264128 564266609 2482 4 0.16116035455278 RFvsST 157546290 780714933 623168644 no 33.1033798778129 TraesCS2A01G331300 chr2A_564264151 chr2A 564264151 A A G G 4 synonymous_variant LOW transcript unique_Triplet 564264128 564266609 2482 4 0.16116035455278 RFvsST 157546290 780714933 623168644 no 33.1033798778129 TraesCS2A01G331400 chr2A_564500274 chr2A 564500274 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 564495851 564498146 2296 2 0.0871080139372822 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G331400 chr2A_564498098 chr2A 564498098 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 564495851 564498146 2296 2 0.0871080139372822 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G333400 chr2A_566858835 chr2A 566858835 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 566851241 566855871 4631 1 0.0215936082919456 RFvsST 157546290 780714933 623168644 no 82.9474340418495 TraesCS2A01G334500 chr2A_568313101 chr2A 568313101 C G C G 3 synonymous_variant LOW transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G334500 chr2A_568313797 chr2A 568313797 A G A G 3 synonymous_variant LOW transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G334500 chr2A_568313352 chr2A 568313352 T G T G 3 synonymous_variant LOW transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G334500 chr2A_568314066 chr2A 568314066 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G334500 chr2A_568310278 chr2A 568310278 C T C T 3 synonymous_variant LOW transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G334500 chr2A_568307095 chr2A 568307095 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 568310269 568313988 3720 6 0.161290322580645 RFvsST 157546290 780714933 623168644 no 439.483674535804 TraesCS2A01G335000 chr2A_568579496 chr2A 568579496 C T C T 3 missense_variant MODERATE transcript unique_Triplet 568579395 568582888 3494 2 0.0572409845449342 RFvsST 157546290 780714933 623168644 no 105.781701931531 TraesCS2A01G335000 chr2A_568581133 chr2A 568581133 G A G A 3 synonymous_variant LOW transcript unique_Triplet 568579395 568582888 3494 2 0.0572409845449342 RFvsST 157546290 780714933 623168644 no 105.781701931531 TraesCS2A01G335100 chr2A_569205752 chr2A 569205752 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 569198052 569203681 5630 1 0.0177619893428064 RFvsST 157546290 780714933 623168644 no 22.3323959849097 TraesCS2A01G335200 chr2A_569209270 chr2A 569209270 C T C T 3 missense_variant MODERATE transcript unique_Triplet 569205872 569209408 3537 1 0.0282725473565168 RFvsST 157546290 780714933 623168644 no 133.057329846142 TraesCS2A01G336000 chr2A_570001895 chr2A 570001895 T C T C 3 synonymous_variant LOW transcript unique_Triplet 569997851 570002453 4603 1 0.0217249619813165 RFvsST 157546290 780714933 623168644 no 12.3088572901775 TraesCS2A01G336100 chr2A_570002595 chr2A 570002595 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570007284 570009611 2328 1 0.0429553264604811 RFvsST 157546290 780714933 623168644 no 6.12106355334552 TraesCS2A01G336200 chr2A_570012255 chr2A 570012255 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 570013765 570014517 753 1 0.132802124833997 RFvsST 157546290 780714933 623168644 no 62.1380812875289 TraesCS2A01G336300 chr2A_570150007 chr2A 570150007 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 570150056 570151481 1426 1 0.0701262272089762 RFvsST 157546290 780714933 623168644 no 540.022933960446 TraesCS2A01G336400 chr2A_570155018 chr2A 570155018 A G A G 3 missense_variant MODERATE transcript unique_Triplet 570154966 570156090 1125 1 0.0888888888888889 RFvsST 157546290 780714933 623168644 no 53.0645423118522 TraesCS2A01G336600 chr2A_570194855 chr2A 570194855 A G A G 3 missense_variant MODERATE transcript unique_Triplet 570192913 570194884 1972 1 0.050709939148073 RFvsST 157546290 780714933 623168644 no 86.5470755959024 TraesCS2A01G336800 chr2A_570268596 chr2A 570268596 A G A G 3 missense_variant MODERATE transcript unique_Triplet 570267749 570268624 876 2 0.228310502283105 RFvsST 157546290 780714933 623168644 no 86.4764380945322 TraesCS2A01G336800 chr2A_570267863 chr2A 570267863 G A G A 3 synonymous_variant LOW transcript unique_Triplet 570267749 570268624 876 2 0.228310502283105 RFvsST 157546290 780714933 623168644 no 86.4764380945322 TraesCS2A01G337100 chr2A_570724537 chr2A 570724537 C T C T 3 missense_variant MODERATE transcript unique_Triplet 570724213 570725070 858 1 0.116550116550117 RFvsST 157546290 780714933 623168644 no 145.450128205187 TraesCS2A01G337200 chr2A_570725178 chr2A 570725178 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 570730161 570732514 2354 1 0.0424808836023789 RFvsST 157546290 780714933 623168644 no 3.76969093939885 TraesCS2A01G337600 chr2A_571148485 chr2A 571148485 G A G A 3 missense_variant MODERATE transcript unique_Triplet 571147779 571149342 1564 3 0.191815856777494 RFvsST 157546290 780714933 623168644 no 203.059999255414 TraesCS2A01G337600 chr2A_571149246 chr2A 571149246 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571147779 571149342 1564 3 0.191815856777494 RFvsST 157546290 780714933 623168644 no 203.059999255414 TraesCS2A01G337600 chr2A_571148015 chr2A 571148015 G C G C 3 synonymous_variant LOW transcript unique_Triplet 571147779 571149342 1564 3 0.191815856777494 RFvsST 157546290 780714933 623168644 no 203.059999255414 TraesCS2A01G337900 chr2A_572057236 chr2A 572057236 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 572055228 572068570 13343 3 0.0224836993179945 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G337900 chr2A_572057093 chr2A 572057093 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 572055228 572068570 13343 3 0.0224836993179945 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G337900 chr2A_572057348 chr2A 572057348 G C G C 3 intron_variant MODIFIER transcript unique_Triplet 572055228 572068570 13343 3 0.0224836993179945 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G343100 chr2A_580023428 chr2A 580023428 C T C T 3 synonymous_variant LOW transcript unique_Triplet 580017991 580023445 5455 1 0.0183318056828598 RFvsST 157546290 780714933 623168644 no 371.845958869245 TraesCS2A01G344700 chr2A_581965953 chr2A 581965953 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 581963743 581965230 1488 1 0.0672043010752688 RFvsST 157546290 780714933 623168644 no 50.1911630729323 TraesCS2A01G346000 chr2A_584511337 chr2A 584511337 G A G A 3 synonymous_variant LOW transcript unique_Triplet 584510774 584512651 1878 1 0.053248136315229 RFvsST 157546290 780714933 623168644 no 346.009043544489 TraesCS2A01G363600 chr2A_607827264 chr2A 607827264 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 607828067 607830217 2151 1 0.0464900046490005 RFvsST 157546290 780714933 623168644 no 108.857349550851 TraesCS2A01G368500 chr2A_611947042 chr2A 611947042 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 611950511 611954425 3915 2 0.0510855683269476 RFvsST 157546290 780714933 623168644 no 147.955450725736 TraesCS2A01G368500 chr2A_611947061 chr2A 611947061 T G T G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 611950511 611954425 3915 2 0.0510855683269476 RFvsST 157546290 780714933 623168644 no 147.955450725736 TraesCS2A01G368600 chr2A_611956653 chr2A 611956653 C G C G 3 synonymous_variant LOW transcript unique_Triplet 611954840 611957404 2565 1 0.0389863547758285 RFvsST 157546290 780714933 623168644 no 25.2747015944056 TraesCS2A01G372300 chr2A_615120809 chr2A 615120809 A G A G 3 synonymous_variant LOW transcript non_Triplet 615119948 615120988 1041 1 0.0960614793467819 RFvsST 157546290 780714933 623168644 no 30.500517134657 TraesCS2A01G374100 chr2A_617184895 chr2A 617184895 G G A A 4 missense_variant MODERATE transcript non_Triplet 617180332 617185160 4829 1 0.020708221163802 RFvsST 157546290 780714933 623168644 no 385.06021421335 TraesCS2A01G381100 chr2A_624459891 chr2A 624459891 G G A A 4 synonymous_variant LOW transcript non_Triplet 624458285 624460545 2261 1 0.0442282176028306 RFvsST 157546290 780714933 623168644 no 330.790326923941 TraesCS2A01G386400 chr2A_632507608 chr2A 632507608 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 632506862 632507616 755 1 0.132450331125828 RFvsST 157546290 780714933 623168644 no 229.629969223836 TraesCS2A01G389600 chr2A_638306122 chr2A 638306122 T T G G 4 missense_variant MODERATE transcript unique_Triplet 638305584 638308610 3027 1 0.0330360092500826 RFvsST 157546290 780714933 623168644 no 185.281169159022 TraesCS2A01G391000 chr2A_640710053 chr2A 640710053 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 640706410 640710578 4169 1 0.0239865675221876 RFvsST 157546290 780714933 623168644 no 815.856244562041 TraesCS2A01G403100 chr2A_657519226 chr2A 657519226 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 657519057 657525346 6290 1 0.0158982511923688 RFvsST 157546290 780714933 623168644 no 95.8733089798796 TraesCS2A01G404900 chr2A_660510707 chr2A 660510707 T T C C 4 missense_variant MODERATE transcript unique_Triplet 660510298 660514159 3862 1 0.0258933195235629 RFvsST 157546290 780714933 623168644 no 66.760071362256 TraesCS2A01G409400 chr2A_667016567 chr2A 667016567 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 667011017 667015600 4584 2 0.043630017452007 RFvsST 157546290 780714933 623168644 no 5.67301439741149 TraesCS2A01G409400 chr2A_667016576 chr2A 667016576 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 667011017 667015600 4584 2 0.043630017452007 RFvsST 157546290 780714933 623168644 no 5.67301439741149 TraesCS2A01G419200 chr2A_674531982 chr2A 674531982 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 674529217 674532222 3006 1 0.0332667997338656 RFvsST 157546290 780714933 623168644 no 30.2574339500583 TraesCS2A01G419600 chr2A_675306025 chr2A 675306025 A G A G 3 missense_variant MODERATE transcript unique_Triplet 675302044 675306684 4641 3 0.0646412411118293 RFvsST 157546290 780714933 623168644 no 105.283317722763 TraesCS2A01G419600 chr2A_675305977 chr2A 675305977 G A G A 3 missense_variant MODERATE transcript unique_Triplet 675302044 675306684 4641 3 0.0646412411118293 RFvsST 157546290 780714933 623168644 no 105.283317722763 TraesCS2A01G419600 chr2A_675302064 chr2A 675302064 T C T C 3 synonymous_variant LOW transcript unique_Triplet 675302044 675306684 4641 3 0.0646412411118293 RFvsST 157546290 780714933 623168644 no 105.283317722763 TraesCS2A01G419900 chr2A_675896548 chr2A 675896548 G A G A 3 synonymous_variant LOW transcript non_Triplet 675896377 675900970 4594 3 0.065302568567697 RFvsST 157546290 780714933 623168644 no 185.868052735395 TraesCS2A01G419900 chr2A_675896895 chr2A 675896895 T C T C 3 missense_variant MODERATE transcript non_Triplet 675896377 675900970 4594 3 0.065302568567697 RFvsST 157546290 780714933 623168644 no 185.868052735395 TraesCS2A01G419900 chr2A_675898744 chr2A 675898744 T G T G 3 missense_variant MODERATE transcript non_Triplet 675896377 675900970 4594 3 0.065302568567697 RFvsST 157546290 780714933 623168644 no 185.868052735395 TraesCS2A01G420000 chr2A_676159568 chr2A 676159568 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420000 chr2A_676159630 chr2A 676159630 A G A G 3 missense_variant MODERATE transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420000 chr2A_676159631 chr2A 676159631 C G C G 3 synonymous_variant LOW transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420000 chr2A_676160320 chr2A 676160320 T C T C 3 missense_variant MODERATE transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420000 chr2A_676160332 chr2A 676160332 G C G C 3 missense_variant MODERATE transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420000 chr2A_676160800 chr2A 676160800 G C G C 3 missense_variant MODERATE transcript unique_Triplet 676159616 676164225 4610 6 0.130151843817787 RFvsST 157546290 780714933 623168644 no 141.645512491625 TraesCS2A01G420500 chr2A_676270719 chr2A 676270719 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 676264604 676265888 1285 2 0.155642023346304 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G420500 chr2A_676267307 chr2A 676267307 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 676264604 676265888 1285 2 0.155642023346304 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G420800 chr2A_676383755 chr2A 676383755 G C G C 3 missense_variant MODERATE transcript unique_Triplet 676383384 676387361 3978 4 0.100553041729512 RFvsST 157546290 780714933 623168644 no 287.63738145819 TraesCS2A01G420800 chr2A_676383830 chr2A 676383830 A G A G 3 missense_variant MODERATE transcript unique_Triplet 676383384 676387361 3978 4 0.100553041729512 RFvsST 157546290 780714933 623168644 no 287.63738145819 TraesCS2A01G420800 chr2A_676383587 chr2A 676383587 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 676383384 676387361 3978 4 0.100553041729512 RFvsST 157546290 780714933 623168644 no 287.63738145819 TraesCS2A01G420800 chr2A_676383813 chr2A 676383813 T C T C 3 synonymous_variant LOW transcript unique_Triplet 676383384 676387361 3978 4 0.100553041729512 RFvsST 157546290 780714933 623168644 no 287.63738145819 TraesCS2A01G420900 chr2A_676389436 chr2A 676389436 G A G A 3 missense_variant MODERATE transcript unique_Triplet 676389317 676392755 3439 2 0.0581564408258215 RFvsST 157546290 780714933 623168644 no 438.961389156847 TraesCS2A01G420900 chr2A_676389888 chr2A 676389888 G A G A 3 missense_variant MODERATE transcript unique_Triplet 676389317 676392755 3439 2 0.0581564408258215 RFvsST 157546290 780714933 623168644 no 438.961389156847 TraesCS2A01G421100 chr2A_676720118 chr2A 676720118 C T C T 3 missense_variant MODERATE transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676716827 chr2A 676716827 G A G A 3 synonymous_variant LOW transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676719958 chr2A 676719958 A G A G 3 synonymous_variant LOW transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676714964 chr2A 676714964 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676719951 chr2A 676719951 C G C G 3 missense_variant MODERATE transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676715065 chr2A 676715065 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421100 chr2A_676714965 chr2A 676714965 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 676715327 676722501 7175 7 0.0975609756097561 RFvsST 157546290 780714933 623168644 no 4010.49019155331 TraesCS2A01G421400 chr2A_676987413 chr2A 676987413 T C T C 3 missense_variant MODERATE transcript unique_Triplet 676985967 676991018 5052 2 0.0395882818685669 RFvsST 157546290 780714933 623168644 no 33.0865059146907 TraesCS2A01G421400 chr2A_676994919 chr2A 676994919 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 676985967 676991018 5052 2 0.0395882818685669 RFvsST 157546290 780714933 623168644 no 33.0865059146907 TraesCS2A01G421500 chr2A_677043923 chr2A 677043923 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 677038269 677039417 1149 3 0.261096605744125 RFvsST 157546290 780714933 623168644 no 22.18416090589 TraesCS2A01G421500 chr2A_677044254 chr2A 677044254 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 677038269 677039417 1149 3 0.261096605744125 RFvsST 157546290 780714933 623168644 no 22.18416090589 TraesCS2A01G421500 chr2A_677044284 chr2A 677044284 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 677038269 677039417 1149 3 0.261096605744125 RFvsST 157546290 780714933 623168644 no 22.18416090589 TraesCS2A01G422600 chr2A_677525259 chr2A 677525259 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 677525824 677530036 4213 2 0.0474721101352955 RFvsST 157546290 780714933 623168644 no 905.342182876792 TraesCS2A01G422600 chr2A_677525271 chr2A 677525271 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 677525824 677530036 4213 2 0.0474721101352955 RFvsST 157546290 780714933 623168644 no 905.342182876792 TraesCS2A01G423500 chr2A_678187372 chr2A 678187372 T T C C 4 missense_variant MODERATE transcript unique_Triplet 678184486 678188487 4002 1 0.0249875062468766 RFvsST 157546290 780714933 623168644 no 50.8635316903071 TraesCS2A01G423600 chr2A_678194102 chr2A 678194102 G G A A 4 synonymous_variant LOW transcript unique_Triplet 678192960 678195922 2963 2 0.0674991562605467 RFvsST 157546290 780714933 623168644 no 10.2994063406965 TraesCS2A01G423600 chr2A_678190504 chr2A 678190504 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 678192960 678195922 2963 2 0.0674991562605467 RFvsST 157546290 780714933 623168644 no 10.2994063406965 TraesCS2A01G424900 chr2A_678962908 chr2A 678962908 T C T C 3 missense_variant MODERATE transcript unique_Triplet 678960731 678963176 2446 1 0.0408830744071954 RFvsST 157546290 780714933 623168644 no 89.9916180372911 TraesCS2A01G428700 chr2A_682012756 chr2A 682012756 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 682015951 682016667 717 1 0.139470013947001 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G432100 chr2A_685223728 chr2A 685223728 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 685217838 685223596 5759 1 0.0173641257162702 RFvsST 157546290 780714933 623168644 no 128.732492366156 TraesCS2A01G432700 chr2A_685960068 chr2A 685960068 A G A G 3 missense_variant MODERATE transcript unique_Triplet 685957134 685968395 11262 1 0.00887941751021133 RFvsST 157546290 780714933 623168644 no 166.176071282584 TraesCS2A01G434600 chr2A_686862935 chr2A 686862935 C C T T 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686855646 chr2A 686855646 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686862947 chr2A 686862947 G G C C 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686863485 chr2A 686863485 G G A A 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686862836 chr2A 686862836 T T G G 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686863250 chr2A 686863250 T T C C 4 missense_variant MODERATE transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686863482 chr2A 686863482 G G A A 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434600 chr2A_686861458 chr2A 686861458 T T C C 4 synonymous_variant LOW transcript unique_Triplet 686856045 686863524 7480 8 0.106951871657754 RFvsST 157546290 780714933 623168644 no 98.9853391586097 TraesCS2A01G434700 chr2A_686863750 chr2A 686863750 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 686867259 686868520 1262 4 0.316957210776545 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G434700 chr2A_686863576 chr2A 686863576 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 686867259 686868520 1262 4 0.316957210776545 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G434700 chr2A_686863591 chr2A 686863591 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 686867259 686868520 1262 4 0.316957210776545 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G434700 chr2A_686863604 chr2A 686863604 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 686867259 686868520 1262 4 0.316957210776545 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G434800 chr2A_686880032 chr2A 686880032 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 686875028 686879984 4957 1 0.0201734920314707 RFvsST 157546290 780714933 623168644 no 458.432078933166 TraesCS2A01G435000 chr2A_686999295 chr2A 686999295 T T C C 4 synonymous_variant LOW transcript non_Triplet 686999055 687000250 1196 1 0.0836120401337793 RFvsST 157546290 780714933 623168644 no 72.495817362076 TraesCS2A01G440100 chr2A_690934270 chr2A 690934270 G G A A 4 missense_variant MODERATE transcript unique_Triplet 690931093 690935410 4318 3 0.0694766095414544 RFvsST 157546290 780714933 623168644 no 514.207420945706 TraesCS2A01G440100 chr2A_690932678 chr2A 690932678 C C T T 4 synonymous_variant LOW transcript unique_Triplet 690931093 690935410 4318 3 0.0694766095414544 RFvsST 157546290 780714933 623168644 no 514.207420945706 TraesCS2A01G440100 chr2A_690932881 chr2A 690932881 C C T T 4 missense_variant MODERATE transcript unique_Triplet 690931093 690935410 4318 3 0.0694766095414544 RFvsST 157546290 780714933 623168644 no 514.207420945706 TraesCS2A01G440600 chr2A_691169352 chr2A 691169352 C C G G 4 synonymous_variant LOW transcript non_Triplet 691169089 691169406 318 4 1.25786163522013 RFvsST 157546290 780714933 623168644 no 96.6452661028697 TraesCS2A01G440600 chr2A_691169532 chr2A 691169532 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 691169089 691169406 318 4 1.25786163522013 RFvsST 157546290 780714933 623168644 no 96.6452661028697 TraesCS2A01G440600 chr2A_691169168 chr2A 691169168 G G C C 4 missense_variant MODERATE transcript non_Triplet 691169089 691169406 318 4 1.25786163522013 RFvsST 157546290 780714933 623168644 no 96.6452661028697 TraesCS2A01G440600 chr2A_691169270 chr2A 691169270 A A G G 4 missense_variant MODERATE transcript non_Triplet 691169089 691169406 318 4 1.25786163522013 RFvsST 157546290 780714933 623168644 no 96.6452661028697 TraesCS2A01G441200 chr2A_691219077 chr2A 691219077 G G T T 4 synonymous_variant LOW transcript non_Triplet 691217819 691230308 12490 3 0.0240192153722978 RFvsST 157546290 780714933 623168644 no 205.545687624743 TraesCS2A01G441200 chr2A_691218135 chr2A 691218135 T T A A 4 synonymous_variant LOW transcript non_Triplet 691217819 691230308 12490 3 0.0240192153722978 RFvsST 157546290 780714933 623168644 no 205.545687624743 TraesCS2A01G441200 chr2A_691218515 chr2A 691218515 G G C C 4 missense_variant MODERATE transcript non_Triplet 691217819 691230308 12490 3 0.0240192153722978 RFvsST 157546290 780714933 623168644 no 205.545687624743 TraesCS2A01G441300 chr2A_691237726 chr2A 691237726 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 691236027 691237946 1920 3 0.15625 RFvsST 157546290 780714933 623168644 no 96.8869718233159 TraesCS2A01G441300 chr2A_691235952 chr2A 691235952 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 691236027 691237946 1920 3 0.15625 RFvsST 157546290 780714933 623168644 no 96.8869718233159 TraesCS2A01G441300 chr2A_691235981 chr2A 691235981 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 691236027 691237946 1920 3 0.15625 RFvsST 157546290 780714933 623168644 no 96.8869718233159 TraesCS2A01G441600 chr2A_691478536 chr2A 691478536 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 691478702 691480419 1718 2 0.116414435389988 RFvsST 157546290 780714933 623168644 no 3.2520555714509 TraesCS2A01G441600 chr2A_691478585 chr2A 691478585 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 691478702 691480419 1718 2 0.116414435389988 RFvsST 157546290 780714933 623168644 no 3.2520555714509 TraesCS2A01G443700 chr2A_693445881 chr2A 693445881 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693445858 chr2A 693445858 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693444759 chr2A 693444759 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693444873 chr2A 693444873 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693443725 chr2A 693443725 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693445451 chr2A 693445451 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443700 chr2A_693444687 chr2A 693444687 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 693443799 693445874 2076 7 0.33718689788054 RFvsST 157546290 780714933 623168644 no 311.032043922578 TraesCS2A01G443900 chr2A_694331065 chr2A 694331065 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 694329804 694333929 4126 5 0.121182743577315 RFvsST 157546290 780714933 623168644 no 103.826441241156 TraesCS2A01G443900 chr2A_694330461 chr2A 694330461 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 694329804 694333929 4126 5 0.121182743577315 RFvsST 157546290 780714933 623168644 no 103.826441241156 TraesCS2A01G443900 chr2A_694331808 chr2A 694331808 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 694329804 694333929 4126 5 0.121182743577315 RFvsST 157546290 780714933 623168644 no 103.826441241156 TraesCS2A01G443900 chr2A_694330108 chr2A 694330108 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 694329804 694333929 4126 5 0.121182743577315 RFvsST 157546290 780714933 623168644 no 103.826441241156 TraesCS2A01G443900 chr2A_694333637 chr2A 694333637 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 694329804 694333929 4126 5 0.121182743577315 RFvsST 157546290 780714933 623168644 no 103.826441241156 TraesCS2A01G444600 chr2A_694754636 chr2A 694754636 T T C C 4 synonymous_variant LOW transcript unique_Triplet 694750673 694754639 3967 3 0.0756238971514999 RFvsST 157546290 780714933 623168644 no 25.0101117863454 TraesCS2A01G444600 chr2A_694754648 chr2A 694754648 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 694750673 694754639 3967 3 0.0756238971514999 RFvsST 157546290 780714933 623168644 no 25.0101117863454 TraesCS2A01G444600 chr2A_694754254 chr2A 694754254 C C A A 4 synonymous_variant LOW transcript unique_Triplet 694750673 694754639 3967 3 0.0756238971514999 RFvsST 157546290 780714933 623168644 no 25.0101117863454 TraesCS2A01G446400 chr2A_695506595 chr2A 695506595 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 695504948 695506149 1202 1 0.0831946755407654 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G446700 chr2A_695523863 chr2A 695523863 G G C C 4 missense_variant MODERATE transcript non_Triplet 695523306 695523880 575 2 0.347826086956522 RFvsST 157546290 780714933 623168644 no 158.106147406253 TraesCS2A01G446700 chr2A_695523312 chr2A 695523312 T T C C 4 synonymous_variant LOW transcript non_Triplet 695523306 695523880 575 2 0.347826086956522 RFvsST 157546290 780714933 623168644 no 158.106147406253 TraesCS2A01G447800 chr2A_696916624 chr2A 696916624 A A G G 4 synonymous_variant LOW transcript unique_Triplet 696915032 696917759 2728 5 0.183284457478006 RFvsST 157546290 780714933 623168644 no 360.680456312915 TraesCS2A01G447800 chr2A_696917606 chr2A 696917606 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 696915032 696917759 2728 5 0.183284457478006 RFvsST 157546290 780714933 623168644 no 360.680456312915 TraesCS2A01G447800 chr2A_696917423 chr2A 696917423 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 696915032 696917759 2728 5 0.183284457478006 RFvsST 157546290 780714933 623168644 no 360.680456312915 TraesCS2A01G447800 chr2A_696917435 chr2A 696917435 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 696915032 696917759 2728 5 0.183284457478006 RFvsST 157546290 780714933 623168644 no 360.680456312915 TraesCS2A01G447800 chr2A_696917168 chr2A 696917168 G G T T 4 synonymous_variant LOW transcript unique_Triplet 696915032 696917759 2728 5 0.183284457478006 RFvsST 157546290 780714933 623168644 no 360.680456312915 TraesCS2A01G447900 chr2A_696919690 chr2A 696919690 C C T T 4 missense_variant MODERATE transcript unique_Triplet 696918332 696921158 2827 2 0.0707463742483198 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G447900 chr2A_696922761 chr2A 696922761 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 696918332 696921158 2827 2 0.0707463742483198 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G448000 chr2A_696924608 chr2A 696924608 G G C C 4 synonymous_variant LOW transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696923771 chr2A 696923771 G G C C 4 missense_variant MODERATE transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696923776 chr2A 696923776 C C T T 4 missense_variant MODERATE transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696924536 chr2A 696924536 T T C C 4 synonymous_variant LOW transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696924864 chr2A 696924864 G G C C 4 missense_variant MODERATE transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696924834 chr2A 696924834 C C T T 4 missense_variant MODERATE transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696924782 chr2A 696924782 C C A A 4 synonymous_variant LOW transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G448000 chr2A_696922958 chr2A 696922958 A A G G 4 synonymous_variant LOW transcript unique_Triplet 696922835 696925529 2695 8 0.296846011131725 RFvsST 157546290 780714933 623168644 no 562.278914200284 TraesCS2A01G449100 chr2A_698825993 chr2A 698825993 G G A A 4 missense_variant MODERATE transcript unique_Triplet 698823746 698826652 2907 2 0.0687994496044032 RFvsST 157546290 780714933 623168644 no 8.55003699043236 TraesCS2A01G449100 chr2A_698826222 chr2A 698826222 G A G A 3 missense_variant MODERATE transcript unique_Triplet 698823746 698826652 2907 2 0.0687994496044032 RFvsST 157546290 780714933 623168644 no 8.55003699043236 TraesCS2A01G449500 chr2A_699514931 chr2A 699514931 C T C T 3 synonymous_variant LOW transcript unique_Triplet 699511507 699514961 3455 1 0.0289435600578871 RFvsST 157546290 780714933 623168644 no 22.3828325926231 TraesCS2A01G450400 chr2A_699874912 chr2A 699874912 G A G A 3 missense_variant MODERATE transcript unique_Triplet 699873821 699876936 3116 2 0.0641848523748395 RFvsST 157546290 780714933 623168644 no 58.6404504388823 TraesCS2A01G450400 chr2A_699876765 chr2A 699876765 A T A T 3 missense_variant MODERATE transcript unique_Triplet 699873821 699876936 3116 2 0.0641848523748395 RFvsST 157546290 780714933 623168644 no 58.6404504388823 TraesCS2A01G451100 chr2A_700668980 chr2A 700668980 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 700666702 700668912 2211 1 0.0452284034373587 RFvsST 157546290 780714933 623168644 no 11.1459735614199 TraesCS2A01G451300 chr2A_700960981 chr2A 700960981 C A C A 3 missense_variant MODERATE transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G451300 chr2A_700955058 chr2A 700955058 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G451300 chr2A_700961343 chr2A 700961343 A A G G 4 missense_variant MODERATE transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G451300 chr2A_700955337 chr2A 700955337 C C G G 4 missense_variant MODERATE transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G451300 chr2A_700958611 chr2A 700958611 G A G A 3 missense_variant MODERATE transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G451300 chr2A_700958612 chr2A 700958612 A T A T 3 missense_variant MODERATE transcript non_Triplet 700955109 700962731 7623 6 0.0787091696182605 RFvsST 157546290 780714933 623168644 no 927.742008753377 TraesCS2A01G452100 chr2A_701482493 chr2A 701482493 T T C C 4 synonymous_variant LOW transcript unique_Triplet 701481251 701483595 2345 2 0.0852878464818763 RFvsST 157546290 780714933 623168644 no 36.8463164804425 TraesCS2A01G452100 chr2A_701481280 chr2A 701481280 T T C C 4 synonymous_variant LOW transcript unique_Triplet 701481251 701483595 2345 2 0.0852878464818763 RFvsST 157546290 780714933 623168644 no 36.8463164804425 TraesCS2A01G452500 chr2A_701867527 chr2A 701867527 C G C G 3 missense_variant MODERATE transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G452500 chr2A_701867558 chr2A 701867558 G G A A 4 missense_variant MODERATE transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G452500 chr2A_701867653 chr2A 701867653 C T C T 3 synonymous_variant LOW transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G452500 chr2A_701868153 chr2A 701868153 G G A A 4 missense_variant MODERATE transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G452500 chr2A_701867972 chr2A 701867972 C C G G 4 missense_variant MODERATE transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G452500 chr2A_701868231 chr2A 701868231 C C A A 4 splice_region_variant&intron_variant LOW transcript non_Triplet 701867101 701868361 1261 6 0.475812846946868 RFvsST 157546290 780714933 623168644 no 149.472576200904 TraesCS2A01G453400 chr2A_702937550 chr2A 702937550 G G C C 4 synonymous_variant LOW transcript non_Triplet 702937263 702937583 321 2 0.623052959501558 RFvsST 157546290 780714933 623168644 no 193.88723533758 TraesCS2A01G453400 chr2A_702937277 chr2A 702937277 C C T T 4 synonymous_variant LOW transcript non_Triplet 702937263 702937583 321 2 0.623052959501558 RFvsST 157546290 780714933 623168644 no 193.88723533758 TraesCS2A01G453900 chr2A_703106277 chr2A 703106277 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 703111013 703111309 297 1 0.336700336700337 RFvsST 157546290 780714933 623168644 no 17.1550785876608 TraesCS2A01G454800 chr2A_703545899 chr2A 703545899 T G T G 3 missense_variant MODERATE transcript non_Triplet 703545719 703546322 604 2 0.33112582781457 RFvsST 157546290 780714933 623168644 no 386.308936916757 TraesCS2A01G454800 chr2A_703546522 chr2A 703546522 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 703545719 703546322 604 2 0.33112582781457 RFvsST 157546290 780714933 623168644 no 386.308936916757 TraesCS2A01G455100 chr2A_703870815 chr2A 703870815 T C T C 3 synonymous_variant LOW transcript unique_Triplet 703869014 703875607 6594 1 0.0151653017895056 RFvsST 157546290 780714933 623168644 no 28.9023172214088 TraesCS2A01G455200 chr2A_703875625 chr2A 703875625 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 703877557 703881109 3553 5 0.140726146918097 RFvsST 157546290 780714933 623168644 no 2065.93531640798 TraesCS2A01G455200 chr2A_703881340 chr2A 703881340 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 703877557 703881109 3553 5 0.140726146918097 RFvsST 157546290 780714933 623168644 no 2065.93531640798 TraesCS2A01G455200 chr2A_703881285 chr2A 703881285 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 703877557 703881109 3553 5 0.140726146918097 RFvsST 157546290 780714933 623168644 no 2065.93531640798 TraesCS2A01G455200 chr2A_703881357 chr2A 703881357 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 703877557 703881109 3553 5 0.140726146918097 RFvsST 157546290 780714933 623168644 no 2065.93531640798 TraesCS2A01G455200 chr2A_703881302 chr2A 703881302 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 703877557 703881109 3553 5 0.140726146918097 RFvsST 157546290 780714933 623168644 no 2065.93531640798 TraesCS2A01G455400 chr2A_704005492 chr2A 704005492 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 704004773 704005847 1075 2 0.186046511627907 RFvsST 157546290 780714933 623168644 no 175.033065109162 TraesCS2A01G455400 chr2A_704005757 chr2A 704005757 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 704004773 704005847 1075 2 0.186046511627907 RFvsST 157546290 780714933 623168644 no 175.033065109162 TraesCS2A01G455700 chr2A_704759222 chr2A 704759222 T C T C 3 missense_variant MODERATE transcript unique_Triplet 704758507 704762488 3982 1 0.0251130085384229 RFvsST 157546290 780714933 623168644 no 83.1698007938095 TraesCS2A01G455900 chr2A_704768321 chr2A 704768321 T C T C 3 missense_variant MODERATE transcript unique_Triplet 704765973 704769482 3510 2 0.056980056980057 RFvsST 157546290 780714933 623168644 no 116.290503881847 TraesCS2A01G455900 chr2A_704768201 chr2A 704768201 T C T C 3 missense_variant MODERATE transcript unique_Triplet 704765973 704769482 3510 2 0.056980056980057 RFvsST 157546290 780714933 623168644 no 116.290503881847 TraesCS2A01G456100 chr2A_704776911 chr2A 704776911 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 704772997 704777010 4014 1 0.0249128051818635 RFvsST 157546290 780714933 623168644 no 1042.40493957051 TraesCS2A01G456200 chr2A_704785399 chr2A 704785399 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704785676 704789273 3598 3 0.0833796553640912 RFvsST 157546290 780714933 623168644 no 851.936132150386 TraesCS2A01G456200 chr2A_704785788 chr2A 704785788 T G T G 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 704785676 704789273 3598 3 0.0833796553640912 RFvsST 157546290 780714933 623168644 no 851.936132150386 TraesCS2A01G456200 chr2A_704786945 chr2A 704786945 T C T C 3 missense_variant MODERATE transcript unique_Triplet 704785676 704789273 3598 3 0.0833796553640912 RFvsST 157546290 780714933 623168644 no 851.936132150386 TraesCS2A01G456300 chr2A_705070192 chr2A 705070192 A G A G 3 synonymous_variant LOW transcript unique_Triplet 705068342 705070585 2244 1 0.0445632798573975 RFvsST 157546290 780714933 623168644 no 73.7239511391774 TraesCS2A01G456600 chr2A_705499482 chr2A 705499482 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 705499491 705501276 1786 1 0.0559910414333707 RFvsST 157546290 780714933 623168644 no 113.918765703029 TraesCS2A01G457300 chr2A_705784282 chr2A 705784282 C T C T 3 missense_variant MODERATE transcript unique_Triplet 705783870 705784310 441 1 0.226757369614512 RFvsST 157546290 780714933 623168644 no 116.794807134288 TraesCS2A01G459300 chr2A_706489308 chr2A 706489308 G A G A 3 synonymous_variant LOW transcript non_Triplet 706488360 706489379 1020 4 0.392156862745098 RFvsST 157546290 780714933 623168644 no 160.217415307669 TraesCS2A01G459300 chr2A_706488326 chr2A 706488326 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 706488360 706489379 1020 4 0.392156862745098 RFvsST 157546290 780714933 623168644 no 160.217415307669 TraesCS2A01G459300 chr2A_706488421 chr2A 706488421 G A G A 3 missense_variant MODERATE transcript non_Triplet 706488360 706489379 1020 4 0.392156862745098 RFvsST 157546290 780714933 623168644 no 160.217415307669 TraesCS2A01G459300 chr2A_706488327 chr2A 706488327 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 706488360 706489379 1020 4 0.392156862745098 RFvsST 157546290 780714933 623168644 no 160.217415307669 TraesCS2A01G459500 chr2A_706529941 chr2A 706529941 T C T C 3 missense_variant MODERATE transcript non_Triplet 706529523 706530534 1012 1 0.0988142292490119 RFvsST 157546290 780714933 623168644 no 45.7946945986928 TraesCS2A01G459600 chr2A_706577519 chr2A 706577519 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 706577377 706581263 3887 3 0.0771803447388732 RFvsST 157546290 780714933 623168644 no 246.567604889135 TraesCS2A01G459600 chr2A_706580583 chr2A 706580583 A G A G 3 synonymous_variant LOW transcript non_Triplet 706577377 706581263 3887 3 0.0771803447388732 RFvsST 157546290 780714933 623168644 no 246.567604889135 TraesCS2A01G459600 chr2A_706577734 chr2A 706577734 C T C T 3 missense_variant MODERATE transcript non_Triplet 706577377 706581263 3887 3 0.0771803447388732 RFvsST 157546290 780714933 623168644 no 246.567604889135 TraesCS2A01G460400 chr2A_706891172 chr2A 706891172 G A G A 3 synonymous_variant LOW transcript unique_Triplet 706889671 706892763 3093 1 0.0323310701584222 RFvsST 157546290 780714933 623168644 no 116.41396377024 TraesCS2A01G460600 chr2A_706922592 chr2A 706922592 G A G A 3 missense_variant MODERATE transcript unique_Triplet 706922547 706922852 306 1 0.326797385620915 RFvsST 157546290 780714933 623168644 no 279.547048222969 TraesCS2A01G461600 chr2A_707303234 chr2A 707303234 T A T A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 707298545 707303267 4723 2 0.0423459665466864 RFvsST 157546290 780714933 623168644 no 219.502109813522 TraesCS2A01G461600 chr2A_707303237 chr2A 707303237 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 707298545 707303267 4723 2 0.0423459665466864 RFvsST 157546290 780714933 623168644 no 219.502109813522 TraesCS2A01G462300 chr2A_707989480 chr2A 707989480 T T C C 4 missense_variant MODERATE transcript non_Triplet 707988216 707989655 1440 3 0.208333333333333 RFvsST 157546290 780714933 623168644 no 158.316843043293 TraesCS2A01G462300 chr2A_707988529 chr2A 707988529 C C G G 4 missense_variant MODERATE transcript non_Triplet 707988216 707989655 1440 3 0.208333333333333 RFvsST 157546290 780714933 623168644 no 158.316843043293 TraesCS2A01G462300 chr2A_707989450 chr2A 707989450 C C A A 4 missense_variant MODERATE transcript non_Triplet 707988216 707989655 1440 3 0.208333333333333 RFvsST 157546290 780714933 623168644 no 158.316843043293 TraesCS2A01G462700 chr2A_708189526 chr2A 708189526 C T C T 3 synonymous_variant LOW transcript non_Triplet 708188283 708189923 1641 4 0.24375380865326 RFvsST 157546290 780714933 623168644 no 70.4910864183067 TraesCS2A01G462700 chr2A_708188394 chr2A 708188394 G G T T 4 synonymous_variant LOW transcript non_Triplet 708188283 708189923 1641 4 0.24375380865326 RFvsST 157546290 780714933 623168644 no 70.4910864183067 TraesCS2A01G462700 chr2A_708190864 chr2A 708190864 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 708188283 708189923 1641 4 0.24375380865326 RFvsST 157546290 780714933 623168644 no 70.4910864183067 TraesCS2A01G462700 chr2A_708189256 chr2A 708189256 G A G A 3 synonymous_variant LOW transcript non_Triplet 708188283 708189923 1641 4 0.24375380865326 RFvsST 157546290 780714933 623168644 no 70.4910864183067 TraesCS2A01G463100 chr2A_709041688 chr2A 709041688 T T C C 4 synonymous_variant LOW transcript unique_Triplet 709041088 709042770 1683 3 0.17825311942959 RFvsST 157546290 780714933 623168644 no 231.801973294184 TraesCS2A01G463100 chr2A_709041053 chr2A 709041053 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 709041088 709042770 1683 3 0.17825311942959 RFvsST 157546290 780714933 623168644 no 231.801973294184 TraesCS2A01G463100 chr2A_709041048 chr2A 709041048 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 709041088 709042770 1683 3 0.17825311942959 RFvsST 157546290 780714933 623168644 no 231.801973294184 TraesCS2A01G463800 chr2A_709701471 chr2A 709701471 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 709696333 709698785 2453 2 0.0815328169588259 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G463800 chr2A_709701469 chr2A 709701469 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 709696333 709698785 2453 2 0.0815328169588259 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G463900 chr2A_709701505 chr2A 709701505 A A G G 4 synonymous_variant LOW transcript unique_Triplet 709701484 709713351 11868 3 0.0252780586450961 RFvsST 157546290 780714933 623168644 no 1171.04804235158 TraesCS2A01G463900 chr2A_709701746 chr2A 709701746 T T G G 4 synonymous_variant LOW transcript unique_Triplet 709701484 709713351 11868 3 0.0252780586450961 RFvsST 157546290 780714933 623168644 no 1171.04804235158 TraesCS2A01G463900 chr2A_709714093 chr2A 709714093 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 709701484 709713351 11868 3 0.0252780586450961 RFvsST 157546290 780714933 623168644 no 1171.04804235158 TraesCS2A01G464100 chr2A_709837010 chr2A 709837010 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 709828533 709836748 8216 2 0.0243427458617332 RFvsST 157546290 780714933 623168644 no 767.942980010553 TraesCS2A01G464100 chr2A_709837251 chr2A 709837251 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 709828533 709836748 8216 2 0.0243427458617332 RFvsST 157546290 780714933 623168644 no 767.942980010553 TraesCS2A01G464300 chr2A_709846647 chr2A 709846647 G G A A 4 synonymous_variant LOW transcript unique_Triplet 709842720 709847465 4746 4 0.0842815002107038 RFvsST 157546290 780714933 623168644 no 45.1633809662816 TraesCS2A01G464300 chr2A_709845358 chr2A 709845358 G G A A 4 synonymous_variant LOW transcript unique_Triplet 709842720 709847465 4746 4 0.0842815002107038 RFvsST 157546290 780714933 623168644 no 45.1633809662816 TraesCS2A01G464300 chr2A_709847064 chr2A 709847064 G G A A 4 synonymous_variant LOW transcript unique_Triplet 709842720 709847465 4746 4 0.0842815002107038 RFvsST 157546290 780714933 623168644 no 45.1633809662816 TraesCS2A01G464300 chr2A_709847068 chr2A 709847068 C C T T 4 synonymous_variant LOW transcript unique_Triplet 709842720 709847465 4746 4 0.0842815002107038 RFvsST 157546290 780714933 623168644 no 45.1633809662816 TraesCS2A01G464500 chr2A_709850821 chr2A 709850821 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 709851327 709852886 1560 1 0.0641025641025641 RFvsST 157546290 780714933 623168644 no 8.89273721871696 TraesCS2A01G464600 chr2A_709858824 chr2A 709858824 C C T T 4 missense_variant MODERATE transcript non_Triplet 709857790 709862891 5102 2 0.0392003136025088 RFvsST 157546290 780714933 623168644 no 139.041108840179 TraesCS2A01G464600 chr2A_709858811 chr2A 709858811 C C T T 4 synonymous_variant LOW transcript non_Triplet 709857790 709862891 5102 2 0.0392003136025088 RFvsST 157546290 780714933 623168644 no 139.041108840179 TraesCS2A01G464900 chr2A_710094399 chr2A 710094399 C C T T 4 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710092857 chr2A 710092857 G G A A 4 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710095740 chr2A 710095740 T T C C 4 synonymous_variant LOW transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710096132 chr2A 710096132 C C A A 4 synonymous_variant LOW transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710096074 chr2A 710096074 C C T T 4 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710099459 chr2A 710099459 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710099685 chr2A 710099685 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710092907 chr2A 710092907 G A G A 3 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710094351 chr2A 710094351 C T C T 3 synonymous_variant LOW transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710095687 chr2A 710095687 T T C C 4 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710092890 chr2A 710092890 G A G A 3 missense_variant MODERATE transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710093621 chr2A 710093621 G G A A 4 synonymous_variant LOW transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G464900 chr2A_710099715 chr2A 710099715 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 710092790 710096429 3640 13 0.357142857142857 RFvsST 157546290 780714933 623168644 no 209.12086501537 TraesCS2A01G465000 chr2A_710097494 chr2A 710097494 A A C C 4 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097450 chr2A 710097450 A A G G 4 synonymous_variant LOW transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097279 chr2A 710097279 G G A A 4 synonymous_variant LOW transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710096999 chr2A 710096999 A A C C 4 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097271 chr2A 710097271 C T C T 3 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097255 chr2A 710097255 C C G G 4 synonymous_variant LOW transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097299 chr2A 710097299 T T C C 4 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097420 chr2A 710097420 A A G G 4 synonymous_variant LOW transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097370 chr2A 710097370 G G A A 4 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097365 chr2A 710097365 C C G G 4 missense_variant MODERATE transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G465000 chr2A_710097258 chr2A 710097258 T T C C 4 synonymous_variant LOW transcript non_Triplet 710096491 710097996 1506 11 0.730411686586985 RFvsST 157546290 780714933 623168644 no 253.448155698614 TraesCS2A01G466700 chr2A_711067684 chr2A 711067684 G C G C 3 synonymous_variant LOW transcript unique_Triplet 711065597 711068361 2765 1 0.0361663652802893 RFvsST 157546290 780714933 623168644 no 169.635276688943 TraesCS2A01G466800 chr2A_711075442 chr2A 711075442 A G A G 3 synonymous_variant LOW transcript unique_Triplet 711075340 711079285 3946 5 0.126710593005575 RFvsST 157546290 780714933 623168644 no 927.42136793704 TraesCS2A01G466800 chr2A_711075549 chr2A 711075549 C T C T 3 missense_variant MODERATE transcript unique_Triplet 711075340 711079285 3946 5 0.126710593005575 RFvsST 157546290 780714933 623168644 no 927.42136793704 TraesCS2A01G466800 chr2A_711077746 chr2A 711077746 G C G C 3 synonymous_variant LOW transcript unique_Triplet 711075340 711079285 3946 5 0.126710593005575 RFvsST 157546290 780714933 623168644 no 927.42136793704 TraesCS2A01G466800 chr2A_711077702 chr2A 711077702 C T C T 3 missense_variant MODERATE transcript unique_Triplet 711075340 711079285 3946 5 0.126710593005575 RFvsST 157546290 780714933 623168644 no 927.42136793704 TraesCS2A01G466800 chr2A_711077641 chr2A 711077641 G A G A 3 synonymous_variant LOW transcript unique_Triplet 711075340 711079285 3946 5 0.126710593005575 RFvsST 157546290 780714933 623168644 no 927.42136793704 TraesCS2A01G466900 chr2A_711466554 chr2A 711466554 C C T T 4 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467828 chr2A 711467828 G G A A 4 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467531 chr2A 711467531 T C T C 3 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467799 chr2A 711467799 C A C A 3 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467330 chr2A 711467330 C C T T 4 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467715 chr2A 711467715 C C T T 4 missense_variant MODERATE transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711466555 chr2A 711466555 C C T T 4 synonymous_variant LOW transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467491 chr2A 711467491 C T C T 3 synonymous_variant LOW transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711467713 chr2A 711467713 G G A A 4 synonymous_variant LOW transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G466900 chr2A_711466594 chr2A 711466594 G A G A 3 synonymous_variant LOW transcript unique_Triplet 711465610 711469413 3804 10 0.262881177707676 RFvsST 157546290 780714933 623168644 no 165.037945727523 TraesCS2A01G467100 chr2A_711542321 chr2A 711542321 G C G C 3 missense_variant MODERATE transcript unique_Triplet 711541846 711542370 525 3 0.571428571428571 RFvsST 157546290 780714933 623168644 no 36.5756819152016 TraesCS2A01G467100 chr2A_711542329 chr2A 711542329 C T C T 3 stop_gained HIGH transcript unique_Triplet 711541846 711542370 525 3 0.571428571428571 RFvsST 157546290 780714933 623168644 no 36.5756819152016 TraesCS2A01G467100 chr2A_711541868 chr2A 711541868 T G T G 3 missense_variant MODERATE transcript unique_Triplet 711541846 711542370 525 3 0.571428571428571 RFvsST 157546290 780714933 623168644 no 36.5756819152016 TraesCS2A01G467300 chr2A_711639222 chr2A 711639222 G G A A 4 synonymous_variant LOW transcript unique_Triplet 711637088 711641134 4047 2 0.0494193229552755 RFvsST 157546290 780714933 623168644 no 489.835718509099 TraesCS2A01G467300 chr2A_711641124 chr2A 711641124 T T C C 4 missense_variant MODERATE transcript unique_Triplet 711637088 711641134 4047 2 0.0494193229552755 RFvsST 157546290 780714933 623168644 no 489.835718509099 TraesCS2A01G467600 chr2A_711884569 chr2A 711884569 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 711881606 711884561 2956 4 0.13531799729364 RFvsST 157546290 780714933 623168644 no 43.9968570940217 TraesCS2A01G467600 chr2A_711884434 chr2A 711884434 C C T T 4 missense_variant MODERATE transcript unique_Triplet 711881606 711884561 2956 4 0.13531799729364 RFvsST 157546290 780714933 623168644 no 43.9968570940217 TraesCS2A01G467600 chr2A_711882205 chr2A 711882205 C T C T 3 synonymous_variant LOW transcript unique_Triplet 711881606 711884561 2956 4 0.13531799729364 RFvsST 157546290 780714933 623168644 no 43.9968570940217 TraesCS2A01G467600 chr2A_711884427 chr2A 711884427 T T C C 4 synonymous_variant LOW transcript unique_Triplet 711881606 711884561 2956 4 0.13531799729364 RFvsST 157546290 780714933 623168644 no 43.9968570940217 TraesCS2A01G467800 chr2A_711977988 chr2A 711977988 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 711974041 711976193 2153 1 0.0464468183929401 RFvsST 157546290 780714933 623168644 no 39.094192296368 TraesCS2A01G467900 chr2A_711976229 chr2A 711976229 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 711977114 711980246 3133 3 0.0957548675390999 RFvsST 157546290 780714933 623168644 no 12077.9120365568 TraesCS2A01G467900 chr2A_711976445 chr2A 711976445 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 711977114 711980246 3133 3 0.0957548675390999 RFvsST 157546290 780714933 623168644 no 12077.9120365568 TraesCS2A01G467900 chr2A_711977182 chr2A 711977182 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 711977114 711980246 3133 3 0.0957548675390999 RFvsST 157546290 780714933 623168644 no 12077.9120365568 TraesCS2A01G468300 chr2A_712307974 chr2A 712307974 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 712308149 712311043 2895 1 0.0345423143350604 RFvsST 157546290 780714933 623168644 no 64.5355289360674 TraesCS2A01G468700 chr2A_712554364 chr2A 712554364 G G A A 4 missense_variant MODERATE transcript unique_Triplet 712553211 712558620 5410 1 0.0184842883548983 RFvsST 157546290 780714933 623168644 no 100.439224548531 TraesCS2A01G468800 chr2A_712577973 chr2A 712577973 C C T T 4 synonymous_variant LOW transcript unique_Triplet 712573083 712581300 8218 1 0.0121684108055488 RFvsST 157546290 780714933 623168644 no 2006.42306292488 TraesCS2A01G469200 chr2A_712790718 chr2A 712790718 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 712791048 712793646 2599 2 0.0769526741054252 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G469200 chr2A_712790670 chr2A 712790670 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 712791048 712793646 2599 2 0.0769526741054252 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G472000 chr2A_713916349 chr2A 713916349 G G A A 4 missense_variant MODERATE transcript unique_Triplet 713916289 713918375 2087 2 0.095831336847149 RFvsST 157546290 780714933 623168644 no 28.6872172492859 TraesCS2A01G472000 chr2A_713917229 chr2A 713917229 T T G G 4 missense_variant MODERATE transcript unique_Triplet 713916289 713918375 2087 2 0.095831336847149 RFvsST 157546290 780714933 623168644 no 28.6872172492859 TraesCS2A01G473100 chr2A_714331621 chr2A 714331621 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 714333183 714338832 5650 2 0.0353982300884956 RFvsST 157546290 780714933 623168644 no 8.72757009172694 TraesCS2A01G473100 chr2A_714331682 chr2A 714331682 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 714333183 714338832 5650 2 0.0353982300884956 RFvsST 157546290 780714933 623168644 no 8.72757009172694 TraesCS2A01G473200 chr2A_714625307 chr2A 714625307 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 714622945 714625167 2223 5 0.224921277552856 RFvsST 157546290 780714933 623168644 no 119.795868889311 TraesCS2A01G473200 chr2A_714623663 chr2A 714623663 G G C C 4 missense_variant MODERATE transcript unique_Triplet 714622945 714625167 2223 5 0.224921277552856 RFvsST 157546290 780714933 623168644 no 119.795868889311 TraesCS2A01G473200 chr2A_714622061 chr2A 714622061 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 714622945 714625167 2223 5 0.224921277552856 RFvsST 157546290 780714933 623168644 no 119.795868889311 TraesCS2A01G473200 chr2A_714623055 chr2A 714623055 C C T T 4 synonymous_variant LOW transcript unique_Triplet 714622945 714625167 2223 5 0.224921277552856 RFvsST 157546290 780714933 623168644 no 119.795868889311 TraesCS2A01G473200 chr2A_714623107 chr2A 714623107 T T C C 4 missense_variant MODERATE transcript unique_Triplet 714622945 714625167 2223 5 0.224921277552856 RFvsST 157546290 780714933 623168644 no 119.795868889311 TraesCS2A01G473600 chr2A_715250633 chr2A 715250633 C C T T 4 missense_variant MODERATE transcript unique_Triplet 715249206 715251053 1848 1 0.0541125541125541 RFvsST 157546290 780714933 623168644 no 148.144157148314 TraesCS2A01G473900 chr2A_715332732 chr2A 715332732 C C T T 4 synonymous_variant LOW transcript unique_Triplet 715331768 715336379 4612 3 0.0650477016478751 RFvsST 157546290 780714933 623168644 no 16.7193448167413 TraesCS2A01G473900 chr2A_715336554 chr2A 715336554 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 715331768 715336379 4612 3 0.0650477016478751 RFvsST 157546290 780714933 623168644 no 16.7193448167413 TraesCS2A01G473900 chr2A_715337307 chr2A 715337307 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 715331768 715336379 4612 3 0.0650477016478751 RFvsST 157546290 780714933 623168644 no 16.7193448167413 TraesCS2A01G475700 chr2A_716164404 chr2A 716164404 C C T T 4 synonymous_variant LOW transcript unique_Triplet 716163652 716169841 6190 1 0.0161550888529887 RFvsST 157546290 780714933 623168644 no 139.716887399331 TraesCS2A01G477200 chr2A_716482921 chr2A 716482921 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 716467075 716478783 11709 1 0.0085404389785635 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G478300 chr2A_717146140 chr2A 717146140 T T C C 4 missense_variant MODERATE transcript unique_Triplet 717144941 717151461 6521 1 0.0153350713080816 RFvsST 157546290 780714933 623168644 no 200.574978245729 TraesCS2A01G478600 chr2A_717188839 chr2A 717188839 T G T G 3 missense_variant MODERATE transcript non_Triplet 717187960 717189516 1557 1 0.0642260757867694 RFvsST 157546290 780714933 623168644 no 68.9551030735518 TraesCS2A01G479100 chr2A_717419928 chr2A 717419928 C C T T 4 missense_variant MODERATE transcript unique_Triplet 717419690 717421185 1496 2 0.133689839572192 RFvsST 157546290 780714933 623168644 no 405.589477315038 TraesCS2A01G479100 chr2A_717420426 chr2A 717420426 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 717419690 717421185 1496 2 0.133689839572192 RFvsST 157546290 780714933 623168644 no 405.589477315038 TraesCS2A01G479400 chr2A_717581346 chr2A 717581346 T T C C 4 missense_variant MODERATE transcript unique_Triplet 717581267 717585237 3971 2 0.0503651473180559 RFvsST 157546290 780714933 623168644 no 54.9001550808162 TraesCS2A01G479400 chr2A_717580968 chr2A 717580968 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 717581267 717585237 3971 2 0.0503651473180559 RFvsST 157546290 780714933 623168644 no 54.9001550808162 TraesCS2A01G480200 chr2A_718130133 chr2A 718130133 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 718124033 718127726 3694 1 0.0270709258256632 RFvsST 157546290 780714933 623168644 no 26.3796828491945 TraesCS2A01G480900 chr2A_718384750 chr2A 718384750 G A G A 3 synonymous_variant LOW transcript unique_Triplet 718383142 718385195 2054 3 0.146056475170399 RFvsST 157546290 780714933 623168644 no 268.849804252455 TraesCS2A01G480900 chr2A_718384862 chr2A 718384862 T C T C 3 missense_variant MODERATE transcript unique_Triplet 718383142 718385195 2054 3 0.146056475170399 RFvsST 157546290 780714933 623168644 no 268.849804252455 TraesCS2A01G480900 chr2A_718384247 chr2A 718384247 A G A G 3 missense_variant MODERATE transcript unique_Triplet 718383142 718385195 2054 3 0.146056475170399 RFvsST 157546290 780714933 623168644 no 268.849804252455 TraesCS2A01G481100 chr2A_718571916 chr2A 718571916 C T C T 3 missense_variant MODERATE transcript unique_Triplet 718571842 718572262 421 2 0.475059382422803 RFvsST 157546290 780714933 623168644 no 8.22995965168271 TraesCS2A01G481100 chr2A_718571897 chr2A 718571897 G G A A 4 missense_variant MODERATE transcript unique_Triplet 718571842 718572262 421 2 0.475059382422803 RFvsST 157546290 780714933 623168644 no 8.22995965168271 TraesCS2A01G481200 chr2A_718571627 chr2A 718571627 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 718574651 718576202 1552 3 0.193298969072165 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G481200 chr2A_718571707 chr2A 718571707 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 718574651 718576202 1552 3 0.193298969072165 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G481200 chr2A_718571806 chr2A 718571806 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 718574651 718576202 1552 3 0.193298969072165 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G481400 chr2A_718721689 chr2A 718721689 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 718722290 718723922 1633 1 0.0612369871402327 RFvsST 157546290 780714933 623168644 no 530.891857728992 TraesCS2A01G481500 chr2A_718724115 chr2A 718724115 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 718728983 718730906 1924 1 0.051975051975052 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G482100 chr2A_718885298 chr2A 718885298 C C T T 4 missense_variant MODERATE transcript non_Triplet 718883587 718885416 1830 2 0.109289617486339 RFvsST 157546290 780714933 623168644 no 13.2726568619209 TraesCS2A01G482100 chr2A_718885378 chr2A 718885378 G G T T 4 missense_variant MODERATE transcript non_Triplet 718883587 718885416 1830 2 0.109289617486339 RFvsST 157546290 780714933 623168644 no 13.2726568619209 TraesCS2A01G483900 chr2A_719470677 chr2A 719470677 T T C C 4 missense_variant MODERATE transcript non_Triplet 719467921 719470861 2941 2 0.0680040802448147 RFvsST 157546290 780714933 623168644 no 172.644783040337 TraesCS2A01G483900 chr2A_719469972 chr2A 719469972 T C T C 3 synonymous_variant LOW transcript non_Triplet 719467921 719470861 2941 2 0.0680040802448147 RFvsST 157546290 780714933 623168644 no 172.644783040337 TraesCS2A01G492300 chr2A_724620953 chr2A 724620953 A G A G 3 synonymous_variant LOW transcript unique_Triplet 724619791 724624911 5121 1 0.0195274360476469 RFvsST 157546290 780714933 623168644 no 239.096086901778 TraesCS2A01G494700 chr2A_726425186 chr2A 726425186 C T C T 3 missense_variant MODERATE transcript unique_Triplet 726421590 726436566 14977 1 0.00667690458703345 RFvsST 157546290 780714933 623168644 no 162.63237934954 TraesCS2A01G495800 chr2A_727188448 chr2A 727188448 T C T C 3 missense_variant MODERATE transcript unique_Triplet 727185113 727189140 4028 1 0.0248262164846077 RFvsST 157546290 780714933 623168644 no 205.541188690454 TraesCS2A01G495900 chr2A_727189767 chr2A 727189767 C T C T 3 synonymous_variant LOW transcript unique_Triplet 727189705 727191528 1824 1 0.0548245614035088 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G496100 chr2A_727244301 chr2A 727244301 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727239482 chr2A 727239482 A G A G 3 synonymous_variant LOW transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727239001 chr2A 727239001 G A G A 3 missense_variant MODERATE transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727239769 chr2A 727239769 T C T C 3 missense_variant MODERATE transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727243309 chr2A 727243309 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727242055 chr2A 727242055 A G A G 3 synonymous_variant LOW transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496100 chr2A_727241143 chr2A 727241143 C T C T 3 synonymous_variant LOW transcript unique_Triplet 727235839 727243788 7950 7 0.0880503144654088 RFvsST 157546290 780714933 623168644 no 276.792549545264 TraesCS2A01G496200 chr2A_727245685 chr2A 727245685 G C G C 3 missense_variant MODERATE transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727245506 chr2A 727245506 A G A G 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727244654 chr2A 727244654 C T C T 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727244936 chr2A 727244936 G A G A 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727244945 chr2A 727244945 T C T C 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727245677 chr2A 727245677 G C G C 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G496200 chr2A_727245608 chr2A 727245608 G C G C 3 synonymous_variant LOW transcript non_Triplet 727244363 727245727 1365 7 0.512820512820513 RFvsST 157546290 780714933 623168644 no 439.573626690832 TraesCS2A01G497700 chr2A_728407188 chr2A 728407188 T T A A 4 synonymous_variant LOW transcript non_Triplet 728406575 728409878 3304 2 0.0605326876513317 RFvsST 157546290 780714933 623168644 no 312.247249739073 TraesCS2A01G497700 chr2A_728409178 chr2A 728409178 A A G G 4 synonymous_variant LOW transcript non_Triplet 728406575 728409878 3304 2 0.0605326876513317 RFvsST 157546290 780714933 623168644 no 312.247249739073 TraesCS2A01G497800 chr2A_728410117 chr2A 728410117 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 728414217 728414751 535 1 0.186915887850467 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G498500 chr2A_728757879 chr2A 728757879 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 728752256 728753370 1115 1 0.0896860986547085 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G498600 chr2A_728758903 chr2A 728758903 C C T T 4 synonymous_variant LOW transcript unique_Triplet 728757845 728758983 1139 2 0.175592625109745 RFvsST 157546290 780714933 623168644 no 448.33647643406 TraesCS2A01G498600 chr2A_728758530 chr2A 728758530 G G A A 4 synonymous_variant LOW transcript unique_Triplet 728757845 728758983 1139 2 0.175592625109745 RFvsST 157546290 780714933 623168644 no 448.33647643406 TraesCS2A01G498800 chr2A_728772984 chr2A 728772984 G A G A 3 missense_variant MODERATE transcript unique_Triplet 728772607 728776641 4035 3 0.0743494423791822 RFvsST 157546290 780714933 623168644 no 104.033980441492 TraesCS2A01G498800 chr2A_728775116 chr2A 728775116 A T A T 3 synonymous_variant LOW transcript unique_Triplet 728772607 728776641 4035 3 0.0743494423791822 RFvsST 157546290 780714933 623168644 no 104.033980441492 TraesCS2A01G498800 chr2A_728773243 chr2A 728773243 A T A T 3 synonymous_variant LOW transcript unique_Triplet 728772607 728776641 4035 3 0.0743494423791822 RFvsST 157546290 780714933 623168644 no 104.033980441492 TraesCS2A01G499000 chr2A_728942254 chr2A 728942254 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 728941455 728942060 606 1 0.165016501650165 RFvsST 157546290 780714933 623168644 no 44.7188065383357 TraesCS2A01G499600 chr2A_729169969 chr2A 729169969 C C T T 4 missense_variant MODERATE transcript unique_Triplet 729169946 729174513 4568 2 0.0437828371278459 RFvsST 157546290 780714933 623168644 no 40.1292624331682 TraesCS2A01G499600 chr2A_729173267 chr2A 729173267 C C T T 4 missense_variant MODERATE transcript unique_Triplet 729169946 729174513 4568 2 0.0437828371278459 RFvsST 157546290 780714933 623168644 no 40.1292624331682 TraesCS2A01G499700 chr2A_729176138 chr2A 729176138 G G A A 4 missense_variant MODERATE transcript non_Triplet 729175084 729176280 1197 1 0.0835421888053467 RFvsST 157546290 780714933 623168644 no 156.798185268499 TraesCS2A01G500200 chr2A_729286273 chr2A 729286273 G G A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 729283115 729286815 3701 1 0.0270197243988111 RFvsST 157546290 780714933 623168644 no 22.8019491829277 TraesCS2A01G504300 chr2A_733216262 chr2A 733216262 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 733216546 733217464 919 4 0.43525571273123 RFvsST 157546290 780714933 623168644 no 1074.5428988431 TraesCS2A01G504300 chr2A_733216283 chr2A 733216283 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 733216546 733217464 919 4 0.43525571273123 RFvsST 157546290 780714933 623168644 no 1074.5428988431 TraesCS2A01G504300 chr2A_733216937 chr2A 733216937 C G C G 3 missense_variant MODERATE transcript unique_Triplet 733216546 733217464 919 4 0.43525571273123 RFvsST 157546290 780714933 623168644 no 1074.5428988431 TraesCS2A01G504300 chr2A_733216936 chr2A 733216936 G C G C 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 733216546 733217464 919 4 0.43525571273123 RFvsST 157546290 780714933 623168644 no 1074.5428988431 TraesCS2A01G504500 chr2A_733353593 chr2A 733353593 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 733342218 733348906 6689 5 0.0747495888772612 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G504500 chr2A_733353526 chr2A 733353526 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 733342218 733348906 6689 5 0.0747495888772612 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G504500 chr2A_733353438 chr2A 733353438 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 733342218 733348906 6689 5 0.0747495888772612 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G504500 chr2A_733353665 chr2A 733353665 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 733342218 733348906 6689 5 0.0747495888772612 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G504500 chr2A_733353586 chr2A 733353586 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 733342218 733348906 6689 5 0.0747495888772612 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G504600 chr2A_733398562 chr2A 733398562 G A G A 3 synonymous_variant LOW transcript non_Triplet 733394976 733398738 3763 3 0.0797236247674728 RFvsST 157546290 780714933 623168644 no 47.088549544727 TraesCS2A01G504600 chr2A_733395028 chr2A 733395028 G C G C 3 missense_variant MODERATE transcript non_Triplet 733394976 733398738 3763 3 0.0797236247674728 RFvsST 157546290 780714933 623168644 no 47.088549544727 TraesCS2A01G504600 chr2A_733394763 chr2A 733394763 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 733394976 733398738 3763 3 0.0797236247674728 RFvsST 157546290 780714933 623168644 no 47.088549544727 TraesCS2A01G505600 chr2A_733850470 chr2A 733850470 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 733854526 733858190 3665 2 0.0545702592087312 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G505600 chr2A_733850484 chr2A 733850484 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 733854526 733858190 3665 2 0.0545702592087312 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G506000 chr2A_734094333 chr2A 734094333 T C T C 3 missense_variant MODERATE transcript unique_Triplet 734090667 734094887 4221 2 0.0473821369343757 RFvsST 157546290 780714933 623168644 no 355.853673771031 TraesCS2A01G506000 chr2A_734094332 chr2A 734094332 A C A C 3 missense_variant MODERATE transcript unique_Triplet 734090667 734094887 4221 2 0.0473821369343757 RFvsST 157546290 780714933 623168644 no 355.853673771031 TraesCS2A01G506200 chr2A_734153030 chr2A 734153030 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 734149077 734152012 2936 3 0.102179836512262 RFvsST 157546290 780714933 623168644 no 57.095252394515 TraesCS2A01G506200 chr2A_734149227 chr2A 734149227 G A G A 3 synonymous_variant LOW transcript unique_Triplet 734149077 734152012 2936 3 0.102179836512262 RFvsST 157546290 780714933 623168644 no 57.095252394515 TraesCS2A01G506200 chr2A_734148891 chr2A 734148891 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 734149077 734152012 2936 3 0.102179836512262 RFvsST 157546290 780714933 623168644 no 57.095252394515 TraesCS2A01G506300 chr2A_734256887 chr2A 734256887 G A G A 3 missense_variant MODERATE transcript non_Triplet 734254650 734258009 3360 2 0.0595238095238095 RFvsST 157546290 780714933 623168644 no 79.9205947877531 TraesCS2A01G506300 chr2A_734256868 chr2A 734256868 G A G A 3 synonymous_variant LOW transcript non_Triplet 734254650 734258009 3360 2 0.0595238095238095 RFvsST 157546290 780714933 623168644 no 79.9205947877531 TraesCS2A01G506400 chr2A_734346615 chr2A 734346615 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 734343884 734346682 2799 1 0.0357270453733476 RFvsST 157546290 780714933 623168644 no 306.361730170388 TraesCS2A01G507200 chr2A_734625220 chr2A 734625220 G A G A 3 synonymous_variant LOW transcript unique_Triplet 734624602 734629060 4459 1 0.0224265530387979 RFvsST 157546290 780714933 623168644 no 45.8647055226266 TraesCS2A01G507900 chr2A_734767589 chr2A 734767589 G C G C 3 missense_variant MODERATE transcript unique_Triplet 734762762 734768063 5302 2 0.0377216144851 RFvsST 157546290 780714933 623168644 no 65.1694256449277 TraesCS2A01G507900 chr2A_734767629 chr2A 734767629 C T C T 3 missense_variant MODERATE transcript unique_Triplet 734762762 734768063 5302 2 0.0377216144851 RFvsST 157546290 780714933 623168644 no 65.1694256449277 TraesCS2A01G508200 chr2A_734886838 chr2A 734886838 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 734886883 734892284 5402 2 0.0370233246945576 RFvsST 157546290 780714933 623168644 no 1725.4077470758 TraesCS2A01G508200 chr2A_734886848 chr2A 734886848 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 734886883 734892284 5402 2 0.0370233246945576 RFvsST 157546290 780714933 623168644 no 1725.4077470758 TraesCS2A01G508300 chr2A_734889208 chr2A 734889208 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 734892541 734896481 3941 2 0.0507485409794468 RFvsST 157546290 780714933 623168644 no 79.4116754849393 TraesCS2A01G508300 chr2A_734889813 chr2A 734889813 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 734892541 734896481 3941 2 0.0507485409794468 RFvsST 157546290 780714933 623168644 no 79.4116754849393 TraesCS2A01G508900 chr2A_735008375 chr2A 735008375 A G A G 3 missense_variant MODERATE transcript non_Triplet 735007114 735009965 2852 1 0.0350631136044881 RFvsST 157546290 780714933 623168644 no 52.8429834323545 TraesCS2A01G514300 chr2A_738921705 chr2A 738921705 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 738921785 738922516 732 2 0.273224043715847 RFvsST 157546290 780714933 623168644 no 121.505068153269 TraesCS2A01G514300 chr2A_738921742 chr2A 738921742 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 738921785 738922516 732 2 0.273224043715847 RFvsST 157546290 780714933 623168644 no 121.505068153269 TraesCS2A01G514400 chr2A_738989470 chr2A 738989470 T A T A 3 missense_variant MODERATE transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989319 chr2A 738989319 A G A G 3 synonymous_variant LOW transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989400 chr2A 738989400 A G A G 3 synonymous_variant LOW transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738988410 chr2A 738988410 A G A G 3 missense_variant MODERATE transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989369 chr2A 738989369 G T G T 3 missense_variant MODERATE transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738985900 chr2A 738985900 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738991347 chr2A 738991347 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989111 chr2A 738989111 A G A G 3 missense_variant MODERATE transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738985803 chr2A 738985803 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989290 chr2A 738989290 C G C G 3 missense_variant MODERATE transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G514400 chr2A_738989829 chr2A 738989829 G A G A 3 synonymous_variant LOW transcript unique_Triplet 738985913 738989990 4078 11 0.269740068661108 RFvsST 157546290 780714933 623168644 no 802.861782266743 TraesCS2A01G515000 chr2A_739430101 chr2A 739430101 G C G C 3 missense_variant MODERATE transcript unique_Triplet 739430005 739434525 4521 3 0.06635700066357 RFvsST 157546290 780714933 623168644 no 83.0295875981367 TraesCS2A01G515000 chr2A_739430341 chr2A 739430341 T C T C 3 missense_variant MODERATE transcript unique_Triplet 739430005 739434525 4521 3 0.06635700066357 RFvsST 157546290 780714933 623168644 no 83.0295875981367 TraesCS2A01G515000 chr2A_739433483 chr2A 739433483 T C T C 3 synonymous_variant LOW transcript unique_Triplet 739430005 739434525 4521 3 0.06635700066357 RFvsST 157546290 780714933 623168644 no 83.0295875981367 TraesCS2A01G516400 chr2A_740070750 chr2A 740070750 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 740072912 740075050 2139 1 0.0467508181393174 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G522600 chr2A_744806805 chr2A 744806805 T C T C 3 missense_variant MODERATE transcript non_Triplet 744806189 744806890 702 2 0.284900284900285 RFvsST 157546290 780714933 623168644 no 112.468176448015 TraesCS2A01G522600 chr2A_744806832 chr2A 744806832 T C T C 3 missense_variant MODERATE transcript non_Triplet 744806189 744806890 702 2 0.284900284900285 RFvsST 157546290 780714933 623168644 no 112.468176448015 TraesCS2A01G526300 chr2A_746688011 chr2A 746688011 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 746682062 746688179 6118 4 0.06538084341288 RFvsST 157546290 780714933 623168644 no 1295.99326645138 TraesCS2A01G526300 chr2A_746687013 chr2A 746687013 T T C C 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 746682062 746688179 6118 4 0.06538084341288 RFvsST 157546290 780714933 623168644 no 1295.99326645138 TraesCS2A01G526300 chr2A_746684518 chr2A 746684518 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 746682062 746688179 6118 4 0.06538084341288 RFvsST 157546290 780714933 623168644 no 1295.99326645138 TraesCS2A01G526300 chr2A_746684566 chr2A 746684566 A A T T 4 intron_variant MODIFIER transcript unique_Triplet 746682062 746688179 6118 4 0.06538084341288 RFvsST 157546290 780714933 623168644 no 1295.99326645138 TraesCS2A01G526400 chr2A_746755768 chr2A 746755768 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 746753860 746755389 1530 1 0.065359477124183 RFvsST 157546290 780714933 623168644 no 211.178094232934 TraesCS2A01G526500 chr2A_746761554 chr2A 746761554 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 746762350 746764238 1889 3 0.158814187400741 RFvsST 157546290 780714933 623168644 no 1878.98785854695 TraesCS2A01G526500 chr2A_746763600 chr2A 746763600 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 746762350 746764238 1889 3 0.158814187400741 RFvsST 157546290 780714933 623168644 no 1878.98785854695 TraesCS2A01G526500 chr2A_746761955 chr2A 746761955 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 746762350 746764238 1889 3 0.158814187400741 RFvsST 157546290 780714933 623168644 no 1878.98785854695 TraesCS2A01G526700 chr2A_746797078 chr2A 746797078 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 746797127 746803766 6640 1 0.0150602409638554 RFvsST 157546290 780714933 623168644 no 125.195752404637 TraesCS2A01G527800 chr2A_747146169 chr2A 747146169 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 747142839 747144725 1887 1 0.0529941706412295 RFvsST 157546290 780714933 623168644 no 286.176566108911 TraesCS2A01G528300 chr2A_747312769 chr2A 747312769 G G A A 4 missense_variant MODERATE transcript non_Triplet 747312335 747314577 2243 1 0.0445831475702185 RFvsST 157546290 780714933 623168644 no 23.5485304583798 TraesCS2A01G532800 chr2A_748964235 chr2A 748964235 T C T C 3 missense_variant MODERATE transcript unique_Triplet 748964189 748967651 3463 1 0.0288766965059197 RFvsST 157546290 780714933 623168644 no 276.812447321951 TraesCS2A01G539500 chr2A_751892578 chr2A 751892578 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539500 chr2A_751892383 chr2A 751892383 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539500 chr2A_751893375 chr2A 751893375 G A G A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539500 chr2A_751893420 chr2A 751893420 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539500 chr2A_751892420 chr2A 751892420 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539500 chr2A_751893490 chr2A 751893490 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 751892375 751893598 1224 6 0.490196078431373 RFvsST 157546290 780714933 623168644 no 504.724167212572 TraesCS2A01G539700 chr2A_752090879 chr2A 752090879 G G A A 4 missense_variant MODERATE transcript unique_Triplet 752086649 752091306 4658 3 0.064405324173465 RFvsST 157546290 780714933 623168644 no 39.572425690829 TraesCS2A01G539700 chr2A_752089755 chr2A 752089755 G C G C 3 missense_variant MODERATE transcript unique_Triplet 752086649 752091306 4658 3 0.064405324173465 RFvsST 157546290 780714933 623168644 no 39.572425690829 TraesCS2A01G539700 chr2A_752091028 chr2A 752091028 C T C T 3 synonymous_variant LOW transcript unique_Triplet 752086649 752091306 4658 3 0.064405324173465 RFvsST 157546290 780714933 623168644 no 39.572425690829 TraesCS2A01G539900 chr2A_752103089 chr2A 752103089 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 752100670 752102570 1901 1 0.0526038926880589 RFvsST 157546290 780714933 623168644 no 9.44449437449524 TraesCS2A01G540900 chr2A_752748981 chr2A 752748981 C T C T 3 missense_variant MODERATE transcript non_Triplet 752748932 752749981 1050 2 0.19047619047619 RFvsST 157546290 780714933 623168644 no 41.7758837343838 TraesCS2A01G540900 chr2A_752748768 chr2A 752748768 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 752748932 752749981 1050 2 0.19047619047619 RFvsST 157546290 780714933 623168644 no 41.7758837343838 TraesCS2A01G541300 chr2A_752867738 chr2A 752867738 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 752862347 752866752 4406 2 0.0453926463912846 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G541300 chr2A_752867788 chr2A 752867788 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 752862347 752866752 4406 2 0.0453926463912846 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G544000 chr2A_753613890 chr2A 753613890 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 753613921 753615692 1772 1 0.0564334085778781 RFvsST 157546290 780714933 623168644 no 10.1987739120651 TraesCS2A01G544700 chr2A_753965859 chr2A 753965859 A A G G 4 synonymous_variant LOW transcript non_Triplet 753965720 753966284 565 3 0.530973451327434 RFvsST 157546290 780714933 623168644 no 74.6756552688292 TraesCS2A01G544700 chr2A_753965707 chr2A 753965707 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 753965720 753966284 565 3 0.530973451327434 RFvsST 157546290 780714933 623168644 no 74.6756552688292 TraesCS2A01G544700 chr2A_753965808 chr2A 753965808 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 753965720 753966284 565 3 0.530973451327434 RFvsST 157546290 780714933 623168644 no 74.6756552688292 TraesCS2A01G545400 chr2A_754356875 chr2A 754356875 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 754349376 754352422 3047 1 0.0328191663931736 RFvsST 157546290 780714933 623168644 no 11.2854936194311 TraesCS2A01G545600 chr2A_754359858 chr2A 754359858 G G A A 4 synonymous_variant LOW transcript unique_Triplet 754358253 754361796 3544 1 0.028216704288939 RFvsST 157546290 780714933 623168644 no 424.951121329138 TraesCS2A01G545700 chr2A_754455174 chr2A 754455174 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 754448717 754451836 3120 2 0.0641025641025641 RFvsST 157546290 780714933 623168644 no 12.9449852177572 TraesCS2A01G545700 chr2A_754455252 chr2A 754455252 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 754448717 754451836 3120 2 0.0641025641025641 RFvsST 157546290 780714933 623168644 no 12.9449852177572 TraesCS2A01G549200 chr2A_756808425 chr2A 756808425 T C T C 3 missense_variant MODERATE transcript unique_Triplet 756803598 756808835 5238 1 0.0190912562046583 RFvsST 157546290 780714933 623168644 no 46.3648697527853 TraesCS2A01G550800 chr2A_757942663 chr2A 757942663 C G C G 3 missense_variant MODERATE transcript non_Triplet 757939694 757942675 2982 5 0.16767270288397 RFvsST 157546290 780714933 623168644 no 7.9431025210648 TraesCS2A01G550800 chr2A_757946235 chr2A 757946235 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 757939694 757942675 2982 5 0.16767270288397 RFvsST 157546290 780714933 623168644 no 7.9431025210648 TraesCS2A01G550800 chr2A_757946642 chr2A 757946642 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 757939694 757942675 2982 5 0.16767270288397 RFvsST 157546290 780714933 623168644 no 7.9431025210648 TraesCS2A01G550800 chr2A_757942756 chr2A 757942756 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 757939694 757942675 2982 5 0.16767270288397 RFvsST 157546290 780714933 623168644 no 7.9431025210648 TraesCS2A01G550800 chr2A_757942775 chr2A 757942775 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 757939694 757942675 2982 5 0.16767270288397 RFvsST 157546290 780714933 623168644 no 7.9431025210648 TraesCS2A01G550900 chr2A_757953185 chr2A 757953185 C T C T 3 missense_variant MODERATE transcript unique_Triplet 757948430 757953327 4898 4 0.0816659861167824 RFvsST 157546290 780714933 623168644 no 138.263500186617 TraesCS2A01G550900 chr2A_757953021 chr2A 757953021 A G A G 3 missense_variant MODERATE transcript unique_Triplet 757948430 757953327 4898 4 0.0816659861167824 RFvsST 157546290 780714933 623168644 no 138.263500186617 TraesCS2A01G550900 chr2A_757953863 chr2A 757953863 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 757948430 757953327 4898 4 0.0816659861167824 RFvsST 157546290 780714933 623168644 no 138.263500186617 TraesCS2A01G550900 chr2A_757953076 chr2A 757953076 C G C G 3 synonymous_variant LOW transcript unique_Triplet 757948430 757953327 4898 4 0.0816659861167824 RFvsST 157546290 780714933 623168644 no 138.263500186617 TraesCS2A01G551100 chr2A_758102807 chr2A 758102807 T C T C 3 synonymous_variant LOW transcript unique_Triplet 758102601 758103247 647 2 0.309119010819165 RFvsST 157546290 780714933 623168644 no 97.2011648283211 TraesCS2A01G551100 chr2A_758103522 chr2A 758103522 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 758102601 758103247 647 2 0.309119010819165 RFvsST 157546290 780714933 623168644 no 97.2011648283211 TraesCS2A01G551600 chr2A_758311713 chr2A 758311713 G C G C 3 missense_variant MODERATE transcript unique_Triplet 758311482 758312474 993 1 0.100704934541793 RFvsST 157546290 780714933 623168644 no 66.0855985001098 TraesCS2A01G555300 chr2A_759822959 chr2A 759822959 A A G G 4 synonymous_variant LOW transcript unique_Triplet 759822758 759824170 1413 2 0.141542816702052 RFvsST 157546290 780714933 623168644 no 144.366928667951 TraesCS2A01G555300 chr2A_759822923 chr2A 759822923 A A G G 4 synonymous_variant LOW transcript unique_Triplet 759822758 759824170 1413 2 0.141542816702052 RFvsST 157546290 780714933 623168644 no 144.366928667951 TraesCS2A01G557600 chr2A_761248342 chr2A 761248342 G C G C 3 synonymous_variant LOW transcript non_Triplet 761246109 761248611 2503 1 0.0399520575309628 RFvsST 157546290 780714933 623168644 no 46.1040289846974 TraesCS2A01G562500 chr2A_763691788 chr2A 763691788 A G A G 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763689666 chr2A 763689666 T C T C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763692052 chr2A 763692052 T C T C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763686752 chr2A 763686752 A T A T 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763684997 chr2A 763684997 G A G A 3 missense_variant MODERATE transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763692284 chr2A 763692284 T C T C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763691167 chr2A 763691167 A G A G 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763693672 chr2A 763693672 G T G T 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763694855 chr2A 763694855 T C T C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763693714 chr2A 763693714 C T C T 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763694418 chr2A 763694418 T C T C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763688430 chr2A 763688430 G A G A 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763691161 chr2A 763691161 A C A C 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763695230 chr2A 763695230 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763695506 chr2A 763695506 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763684924 chr2A 763684924 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763695272 chr2A 763695272 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763695483 chr2A 763695483 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763694282 chr2A 763694282 C G C G 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763688258 chr2A 763688258 C A C A 3 synonymous_variant LOW transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G562500 chr2A_763695618 chr2A 763695618 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 763684982 763695214 10233 21 0.20521841102316 RFvsST 157546290 780714933 623168644 no 74.1808772313715 TraesCS2A01G564000 chr2A_764322587 chr2A 764322587 T A T A 3 synonymous_variant LOW transcript unique_Triplet 764321984 764324786 2803 5 0.178380306814128 RFvsST 157546290 780714933 623168644 no 163.152111035265 TraesCS2A01G564000 chr2A_764322416 chr2A 764322416 T G T G 3 synonymous_variant LOW transcript unique_Triplet 764321984 764324786 2803 5 0.178380306814128 RFvsST 157546290 780714933 623168644 no 163.152111035265 TraesCS2A01G564000 chr2A_764322626 chr2A 764322626 T C T C 3 synonymous_variant LOW transcript unique_Triplet 764321984 764324786 2803 5 0.178380306814128 RFvsST 157546290 780714933 623168644 no 163.152111035265 TraesCS2A01G564000 chr2A_764322419 chr2A 764322419 A G A G 3 synonymous_variant LOW transcript unique_Triplet 764321984 764324786 2803 5 0.178380306814128 RFvsST 157546290 780714933 623168644 no 163.152111035265 TraesCS2A01G564000 chr2A_764324839 chr2A 764324839 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 764321984 764324786 2803 5 0.178380306814128 RFvsST 157546290 780714933 623168644 no 163.152111035265 TraesCS2A01G564200 chr2A_764657278 chr2A 764657278 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764657014 chr2A 764657014 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764657304 chr2A 764657304 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764657293 chr2A 764657293 T A T A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764667699 chr2A 764667699 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764657231 chr2A 764657231 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564200 chr2A_764657097 chr2A 764657097 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 764658054 764675166 17113 7 0.0409045754689417 RFvsST 157546290 780714933 623168644 no 785.140368705625 TraesCS2A01G564400 chr2A_764685871 chr2A 764685871 T G T G 3 missense_variant MODERATE transcript non_Triplet 764685447 764686310 864 3 0.347222222222222 RFvsST 157546290 780714933 623168644 no 59.5421714223702 TraesCS2A01G564400 chr2A_764685572 chr2A 764685572 G A G A 3 synonymous_variant LOW transcript non_Triplet 764685447 764686310 864 3 0.347222222222222 RFvsST 157546290 780714933 623168644 no 59.5421714223702 TraesCS2A01G564400 chr2A_764685722 chr2A 764685722 A G A G 3 synonymous_variant LOW transcript non_Triplet 764685447 764686310 864 3 0.347222222222222 RFvsST 157546290 780714933 623168644 no 59.5421714223702 TraesCS2A01G565600 chr2A_765053548 chr2A 765053548 C T C T 3 synonymous_variant LOW transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G565600 chr2A_765053281 chr2A 765053281 C G C G 3 synonymous_variant LOW transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G565600 chr2A_765052917 chr2A 765052917 T G T G 3 missense_variant MODERATE transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G565600 chr2A_765053722 chr2A 765053722 A G A G 3 synonymous_variant LOW transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G565600 chr2A_765056414 chr2A 765056414 C A C A 3 missense_variant MODERATE transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G565600 chr2A_765053086 chr2A 765053086 A G A G 3 synonymous_variant LOW transcript unique_Triplet 765052906 765056417 3512 6 0.170842824601367 RFvsST 157546290 780714933 623168644 no 434.428738218511 TraesCS2A01G566000 chr2A_765374350 chr2A 765374350 G A G A 3 synonymous_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765373595 chr2A 765373595 T C T C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765373663 chr2A 765373663 T C T C 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765373888 chr2A 765373888 C G C G 3 synonymous_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765374283 chr2A 765374283 A G A G 3 missense_variant MODERATE transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765374124 chr2A 765374124 G T G T 3 missense_variant MODERATE transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765374874 chr2A 765374874 A G A G 3 synonymous_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765374119 chr2A 765374119 A G A G 3 synonymous_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566000 chr2A_765374224 chr2A 765374224 G A G A 3 synonymous_variant LOW transcript non_Triplet 765373519 765375363 1845 9 0.48780487804878 RFvsST 157546290 780714933 623168644 no 160.003845647698 TraesCS2A01G566100 chr2A_765393518 chr2A 765393518 C T C T 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765393624 chr2A 765393624 C G C G 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765392988 chr2A 765392988 A G A G 3 synonymous_variant LOW transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765392530 chr2A 765392530 C G C G 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765393045 chr2A 765393045 G A G A 3 synonymous_variant LOW transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765392735 chr2A 765392735 G A G A 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765392603 chr2A 765392603 G A G A 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765393636 chr2A 765393636 T G T G 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765393752 chr2A 765393752 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566100 chr2A_765393115 chr2A 765393115 G A G A 3 missense_variant MODERATE transcript unique_Triplet 765392440 765393650 1211 10 0.825763831544178 RFvsST 157546290 780714933 623168644 no 79.0135264656403 TraesCS2A01G566600 chr2A_765710144 chr2A 765710144 C T C T 3 synonymous_variant LOW transcript unique_Triplet 765701271 765710309 9039 3 0.0331895121141719 RFvsST 157546290 780714933 623168644 no 251.093234467056 TraesCS2A01G566600 chr2A_765710063 chr2A 765710063 A G A G 3 synonymous_variant LOW transcript unique_Triplet 765701271 765710309 9039 3 0.0331895121141719 RFvsST 157546290 780714933 623168644 no 251.093234467056 TraesCS2A01G566600 chr2A_765707710 chr2A 765707710 C T C T 3 synonymous_variant LOW transcript unique_Triplet 765701271 765710309 9039 3 0.0331895121141719 RFvsST 157546290 780714933 623168644 no 251.093234467056 TraesCS2A01G566700 chr2A_765761089 chr2A 765761089 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 765761044 765762686 1643 2 0.121728545343883 RFvsST 157546290 780714933 623168644 no 1096.11283663235 TraesCS2A01G566700 chr2A_765761084 chr2A 765761084 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 765761044 765762686 1643 2 0.121728545343883 RFvsST 157546290 780714933 623168644 no 1096.11283663235 TraesCS2A01G567600 chr2A_766396373 chr2A 766396373 A G A G 3 missense_variant MODERATE transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567600 chr2A_766393726 chr2A 766393726 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567600 chr2A_766393637 chr2A 766393637 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567600 chr2A_766400449 chr2A 766400449 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567600 chr2A_766400313 chr2A 766400313 C T C T 3 missense_variant MODERATE transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567600 chr2A_766400396 chr2A 766400396 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 766393807 766400377 6571 6 0.0913103028458378 RFvsST 157546290 780714933 623168644 no 134.788508757935 TraesCS2A01G567900 chr2A_766567238 chr2A 766567238 G A G A 3 synonymous_variant LOW transcript unique_Triplet 766566380 766573141 6762 5 0.0739426205264715 RFvsST 157546290 780714933 623168644 no 68.2241740138626 TraesCS2A01G567900 chr2A_766570726 chr2A 766570726 G A G A 3 missense_variant MODERATE transcript unique_Triplet 766566380 766573141 6762 5 0.0739426205264715 RFvsST 157546290 780714933 623168644 no 68.2241740138626 TraesCS2A01G567900 chr2A_766567166 chr2A 766567166 G A G A 3 synonymous_variant LOW transcript unique_Triplet 766566380 766573141 6762 5 0.0739426205264715 RFvsST 157546290 780714933 623168644 no 68.2241740138626 TraesCS2A01G567900 chr2A_766567076 chr2A 766567076 C G C G 3 missense_variant MODERATE transcript unique_Triplet 766566380 766573141 6762 5 0.0739426205264715 RFvsST 157546290 780714933 623168644 no 68.2241740138626 TraesCS2A01G567900 chr2A_766566257 chr2A 766566257 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 766566380 766573141 6762 5 0.0739426205264715 RFvsST 157546290 780714933 623168644 no 68.2241740138626 TraesCS2A01G569300 chr2A_767018870 chr2A 767018870 A T A T 3 synonymous_variant LOW transcript unique_Triplet 767017993 767036666 18674 4 0.0214201563671415 RFvsST 157546290 780714933 623168644 no 87.6083017874744 TraesCS2A01G569300 chr2A_767018820 chr2A 767018820 G A G A 3 missense_variant MODERATE transcript unique_Triplet 767017993 767036666 18674 4 0.0214201563671415 RFvsST 157546290 780714933 623168644 no 87.6083017874744 TraesCS2A01G569300 chr2A_767018886 chr2A 767018886 G A G A 3 missense_variant MODERATE transcript unique_Triplet 767017993 767036666 18674 4 0.0214201563671415 RFvsST 157546290 780714933 623168644 no 87.6083017874744 TraesCS2A01G569300 chr2A_767018966 chr2A 767018966 C T C T 3 synonymous_variant LOW transcript unique_Triplet 767017993 767036666 18674 4 0.0214201563671415 RFvsST 157546290 780714933 623168644 no 87.6083017874744 TraesCS2A01G571300 chr2A_768266887 chr2A 768266887 G G C C 4 synonymous_variant LOW transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G571300 chr2A_768266033 chr2A 768266033 T T G G 4 missense_variant MODERATE transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G571300 chr2A_768266116 chr2A 768266116 G G C C 4 synonymous_variant LOW transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G571300 chr2A_768266509 chr2A 768266509 T T C C 4 synonymous_variant LOW transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G571300 chr2A_768267012 chr2A 768267012 T T C C 4 missense_variant MODERATE transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G571300 chr2A_768266950 chr2A 768266950 A A G G 4 synonymous_variant LOW transcript non_Triplet 768266008 768267120 1113 6 0.539083557951483 RFvsST 157546290 780714933 623168644 no 114.470432147678 TraesCS2A01G574200 chr2A_769255562 chr2A 769255562 G G A A 4 missense_variant MODERATE transcript unique_Triplet 769254710 769256035 1326 4 0.301659125188537 RFvsST 157546290 780714933 623168644 no 130.84052862077 TraesCS2A01G574200 chr2A_769254730 chr2A 769254730 C C A A 4 synonymous_variant LOW transcript unique_Triplet 769254710 769256035 1326 4 0.301659125188537 RFvsST 157546290 780714933 623168644 no 130.84052862077 TraesCS2A01G574200 chr2A_769255919 chr2A 769255919 G G A A 4 missense_variant MODERATE transcript unique_Triplet 769254710 769256035 1326 4 0.301659125188537 RFvsST 157546290 780714933 623168644 no 130.84052862077 TraesCS2A01G574200 chr2A_769256040 chr2A 769256040 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 769254710 769256035 1326 4 0.301659125188537 RFvsST 157546290 780714933 623168644 no 130.84052862077 TraesCS2A01G574600 chr2A_769497574 chr2A 769497574 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 769494669 769497430 2762 3 0.108616944243302 RFvsST 157546290 780714933 623168644 no 107.170406558123 TraesCS2A01G574600 chr2A_769497397 chr2A 769497397 T T C C 4 synonymous_variant LOW transcript unique_Triplet 769494669 769497430 2762 3 0.108616944243302 RFvsST 157546290 780714933 623168644 no 107.170406558123 TraesCS2A01G574600 chr2A_769497410 chr2A 769497410 C C T T 4 missense_variant MODERATE transcript unique_Triplet 769494669 769497430 2762 3 0.108616944243302 RFvsST 157546290 780714933 623168644 no 107.170406558123 TraesCS2A01G575400 chr2A_770014028 chr2A 770014028 T T C C 4 synonymous_variant LOW transcript unique_Triplet 770012633 770014187 1555 1 0.0643086816720257 RFvsST 157546290 780714933 623168644 no 63.4741366592486 TraesCS2A01G576400 chr2A_770359276 chr2A 770359276 C C T T 4 synonymous_variant LOW transcript unique_Triplet 770358266 770361267 3002 4 0.133244503664224 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576400 chr2A_770358510 chr2A 770358510 T C T C 3 missense_variant MODERATE transcript unique_Triplet 770358266 770361267 3002 4 0.133244503664224 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576400 chr2A_770359234 chr2A 770359234 G G A A 4 synonymous_variant LOW transcript unique_Triplet 770358266 770361267 3002 4 0.133244503664224 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576400 chr2A_770358434 chr2A 770358434 T T C C 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 770358266 770361267 3002 4 0.133244503664224 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576500 chr2A_770411647 chr2A 770411647 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 770410158 770410869 712 3 0.421348314606742 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576500 chr2A_770411685 chr2A 770411685 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 770410158 770410869 712 3 0.421348314606742 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576500 chr2A_770411392 chr2A 770411392 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 770410158 770410869 712 3 0.421348314606742 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G576600 chr2A_770414527 chr2A 770414527 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 770411706 770414485 2780 4 0.143884892086331 RFvsST 157546290 780714933 623168644 no 53.1873131414298 TraesCS2A01G576600 chr2A_770412315 chr2A 770412315 G A G A 3 synonymous_variant LOW transcript unique_Triplet 770411706 770414485 2780 4 0.143884892086331 RFvsST 157546290 780714933 623168644 no 53.1873131414298 TraesCS2A01G576600 chr2A_770412146 chr2A 770412146 T C T C 3 missense_variant MODERATE transcript unique_Triplet 770411706 770414485 2780 4 0.143884892086331 RFvsST 157546290 780714933 623168644 no 53.1873131414298 TraesCS2A01G576600 chr2A_770412188 chr2A 770412188 C C T T 4 missense_variant MODERATE transcript unique_Triplet 770411706 770414485 2780 4 0.143884892086331 RFvsST 157546290 780714933 623168644 no 53.1873131414298 TraesCS2A01G577400 chr2A_771506842 chr2A 771506842 T G T G 3 missense_variant MODERATE transcript non_Triplet 771505211 771506880 1670 2 0.119760479041916 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G577400 chr2A_771506713 chr2A 771506713 A G A G 3 synonymous_variant LOW transcript non_Triplet 771505211 771506880 1670 2 0.119760479041916 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G577700 chr2A_771517451 chr2A 771517451 T C T C 3 missense_variant MODERATE transcript unique_Triplet 771515862 771517500 1639 4 0.24405125076266 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G577700 chr2A_771512413 chr2A 771512413 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 771515862 771517500 1639 4 0.24405125076266 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G577700 chr2A_771517377 chr2A 771517377 C T C T 3 synonymous_variant LOW transcript unique_Triplet 771515862 771517500 1639 4 0.24405125076266 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G577700 chr2A_771512458 chr2A 771512458 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 771515862 771517500 1639 4 0.24405125076266 RFvsST 157546290 780714933 623168644 no No_match TraesCS2A01G580800 chr2A_773177374 chr2A 773177374 G C G C 3 synonymous_variant LOW transcript unique_Triplet 773177123 773185969 8847 1 0.0113032666440601 RFvsST 157546290 780714933 623168644 no 1360.74881095127 TraesCS2A01G583500 chr2A_775359448 chr2A 775359448 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 775358516 775359504 989 2 0.202224469160768 RFvsST 157546290 780714933 623168644 no 212.708873147415 TraesCS2A01G583500 chr2A_775358781 chr2A 775358781 A G A G 3 missense_variant MODERATE transcript non_Triplet 775358516 775359504 989 2 0.202224469160768 RFvsST 157546290 780714933 623168644 no 212.708873147415 TraesCS2A01G583600 chr2A_775379205 chr2A 775379205 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 775378492 775379157 666 1 0.15015015015015 RFvsST 157546290 780714933 623168644 no 311.763937541277 TraesCS2A01G583700 chr2A_775439952 chr2A 775439952 G G A A 4 synonymous_variant LOW transcript non_Triplet 775437096 775442293 5198 1 0.0192381685263563 RFvsST 157546290 780714933 623168644 no 20.2457489660319 TraesCS2A01G583800 chr2A_775524332 chr2A 775524332 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775524340 775531058 6719 1 0.014883167137967 RFvsST 157546290 780714933 623168644 no 32.1784614866932 TraesCS2A01G583900 chr2A_775580493 chr2A 775580493 C C G G 4 synonymous_variant LOW transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775581312 chr2A 775581312 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580283 chr2A 775580283 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580514 chr2A 775580514 C C G G 4 synonymous_variant LOW transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580194 chr2A 775580194 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580282 chr2A 775580282 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775581217 chr2A 775581217 G T G T 3 missense_variant MODERATE transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580364 chr2A 775580364 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580124 chr2A 775580124 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775580430 chr2A 775580430 G A G A 3 synonymous_variant LOW transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G583900 chr2A_775581313 chr2A 775581313 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 775580376 775581245 870 11 1.26436781609195 RFvsST 157546290 780714933 623168644 no 88.8299170940693 TraesCS2A01G584100 chr2A_775618231 chr2A 775618231 C C A A 4 stop_gained HIGH transcript non_Triplet 775617006 775620626 3621 2 0.0552333609500138 RFvsST 157546290 780714933 623168644 no 22.4844611542557 TraesCS2A01G584100 chr2A_775619016 chr2A 775619016 G A G A 3 missense_variant MODERATE transcript non_Triplet 775617006 775620626 3621 2 0.0552333609500138 RFvsST 157546290 780714933 623168644 no 22.4844611542557 TraesCS2A01G589900 chr2A_778425066 chr2A 778425066 T T C C 4 synonymous_variant LOW transcript non_Triplet 778423181 778425198 2018 4 0.198216055500496 RFvsST 157546290 780714933 623168644 no 99.8150962166748 TraesCS2A01G589900 chr2A_778423159 chr2A 778423159 G A C A,C 6 upstream_gene_variant MODIFIER transcript non_Triplet 778423181 778425198 2018 4 0.198216055500496 RFvsST 157546290 780714933 623168644 no 99.8150962166748 TraesCS2A01G589900 chr2A_778423165 chr2A 778423165 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 778423181 778425198 2018 4 0.198216055500496 RFvsST 157546290 780714933 623168644 no 99.8150962166748 TraesCS2A01G589900 chr2A_778425257 chr2A 778425257 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 778423181 778425198 2018 4 0.198216055500496 RFvsST 157546290 780714933 623168644 no 99.8150962166748 TraesCS2A01G590000 chr2A_778428005 chr2A 778428005 G C G C 3 missense_variant MODERATE transcript unique_Triplet 778425662 778428019 2358 1 0.0424088210347752 RFvsST 157546290 780714933 623168644 no 108.533953314288 TraesCS2A01G591200 chr2A_778918126 chr2A 778918126 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 778914739 778915488 750 1 0.133333333333333 RFvsST 157546290 780714933 623168644 no 10.4315627889027 TraesCS2A01G591300 chr2A_778922175 chr2A 778922175 C T C T 3 synonymous_variant LOW transcript unique_Triplet 778918761 778923576 4816 2 0.0415282392026578 RFvsST 157546290 780714933 623168644 no 281.224119423641 TraesCS2A01G591300 chr2A_778920131 chr2A 778920131 G C G C 3 synonymous_variant LOW transcript unique_Triplet 778918761 778923576 4816 2 0.0415282392026578 RFvsST 157546290 780714933 623168644 no 281.224119423641 TraesCS2B01G000100 chr2B_10885 chr2B 10885 C T C T 3 synonymous_variant LOW transcript non_Triplet 10057 11457 1401 4 0.285510349750178 RFvsST 10057 695693088 695683032 no 2154.52268453288 TraesCS2B01G000100 chr2B_10826 chr2B 10826 G T G T 3 missense_variant MODERATE transcript non_Triplet 10057 11457 1401 4 0.285510349750178 RFvsST 10057 695693088 695683032 no 2154.52268453288 TraesCS2B01G000100 chr2B_11056 chr2B 11056 T C T C 3 synonymous_variant LOW transcript non_Triplet 10057 11457 1401 4 0.285510349750178 RFvsST 10057 695693088 695683032 no 2154.52268453288 TraesCS2B01G000100 chr2B_11067 chr2B 11067 G G C C 4 missense_variant MODERATE transcript non_Triplet 10057 11457 1401 4 0.285510349750178 RFvsST 10057 695693088 695683032 no 2154.52268453288 TraesCS2B01G000300 chr2B_51955 chr2B 51955 G G A A 4 intron_variant MODIFIER transcript non_Triplet 45037 61255 16219 1 0.0061656082372526 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G001600 chr2B_1249281 chr2B 1249281 G T G T 3 synonymous_variant LOW transcript non_Triplet 1248784 1252232 3449 1 0.0289939112786315 RFvsST 10057 695693088 695683032 no 251.834456944654 TraesCS2B01G002100 chr2B_1362067 chr2B 1362067 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 1348975 1361789 12815 1 0.00780335544284042 RFvsST 10057 695693088 695683032 no 112.737951543939 TraesCS2B01G003600 chr2B_1833392 chr2B 1833392 T C T C 3 synonymous_variant LOW transcript unique_Triplet 1831881 1833776 1896 4 0.210970464135021 RFvsST 10057 695693088 695683032 no 82.5469881617435 TraesCS2B01G003600 chr2B_1833686 chr2B 1833686 G T G T 3 synonymous_variant LOW transcript unique_Triplet 1831881 1833776 1896 4 0.210970464135021 RFvsST 10057 695693088 695683032 no 82.5469881617435 TraesCS2B01G003600 chr2B_1833488 chr2B 1833488 G T G T 3 synonymous_variant LOW transcript unique_Triplet 1831881 1833776 1896 4 0.210970464135021 RFvsST 10057 695693088 695683032 no 82.5469881617435 TraesCS2B01G003600 chr2B_1833530 chr2B 1833530 A T A T 3 synonymous_variant LOW transcript unique_Triplet 1831881 1833776 1896 4 0.210970464135021 RFvsST 10057 695693088 695683032 no 82.5469881617435 TraesCS2B01G005100 chr2B_3303253 chr2B 3303253 C T C T 3 missense_variant MODERATE transcript unique_Triplet 3300441 3306813 6373 5 0.0784559861917464 RFvsST 10057 695693088 695683032 no 16.3804726446108 TraesCS2B01G005100 chr2B_3300107 chr2B 3300107 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 3300441 3306813 6373 5 0.0784559861917464 RFvsST 10057 695693088 695683032 no 16.3804726446108 TraesCS2B01G005100 chr2B_3301929 chr2B 3301929 G C G C 3 synonymous_variant LOW transcript unique_Triplet 3300441 3306813 6373 5 0.0784559861917464 RFvsST 10057 695693088 695683032 no 16.3804726446108 TraesCS2B01G005100 chr2B_3303855 chr2B 3303855 C T C T 3 synonymous_variant LOW transcript unique_Triplet 3300441 3306813 6373 5 0.0784559861917464 RFvsST 10057 695693088 695683032 no 16.3804726446108 TraesCS2B01G005100 chr2B_3301963 chr2B 3301963 C A C A 3 missense_variant MODERATE transcript unique_Triplet 3300441 3306813 6373 5 0.0784559861917464 RFvsST 10057 695693088 695683032 no 16.3804726446108 TraesCS2B01G005300 chr2B_3398454 chr2B 3398454 G T G T 3 missense_variant MODERATE transcript non_Triplet 3398345 3406093 7749 3 0.0387146728610143 RFvsST 10057 695693088 695683032 no 22.4003423419919 TraesCS2B01G005300 chr2B_3399493 chr2B 3399493 A C A C 3 synonymous_variant LOW transcript non_Triplet 3398345 3406093 7749 3 0.0387146728610143 RFvsST 10057 695693088 695683032 no 22.4003423419919 TraesCS2B01G005300 chr2B_3399503 chr2B 3399503 A G A G 3 missense_variant MODERATE transcript non_Triplet 3398345 3406093 7749 3 0.0387146728610143 RFvsST 10057 695693088 695683032 no 22.4003423419919 TraesCS2B01G007400 chr2B_4637555 chr2B 4637555 G A G A 3 missense_variant MODERATE transcript non_Triplet 4633720 4637892 4173 5 0.119817876827223 RFvsST 10057 695693088 695683032 no 310.427509516948 TraesCS2B01G007400 chr2B_4635682 chr2B 4635682 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 4633720 4637892 4173 5 0.119817876827223 RFvsST 10057 695693088 695683032 no 310.427509516948 TraesCS2B01G007400 chr2B_4637844 chr2B 4637844 G A G A 3 synonymous_variant LOW transcript non_Triplet 4633720 4637892 4173 5 0.119817876827223 RFvsST 10057 695693088 695683032 no 310.427509516948 TraesCS2B01G007400 chr2B_4633952 chr2B 4633952 T A T A 3 missense_variant MODERATE transcript non_Triplet 4633720 4637892 4173 5 0.119817876827223 RFvsST 10057 695693088 695683032 no 310.427509516948 TraesCS2B01G007400 chr2B_4636552 chr2B 4636552 T C T C 3 missense_variant MODERATE transcript non_Triplet 4633720 4637892 4173 5 0.119817876827223 RFvsST 10057 695693088 695683032 no 310.427509516948 TraesCS2B01G007500 chr2B_4645836 chr2B 4645836 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007500 chr2B_4646791 chr2B 4646791 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007500 chr2B_4645542 chr2B 4645542 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007500 chr2B_4643231 chr2B 4643231 G A G A 3 missense_variant MODERATE transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007500 chr2B_4643059 chr2B 4643059 G A G A 3 synonymous_variant LOW transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007500 chr2B_4645708 chr2B 4645708 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 4642754 4643683 930 6 0.645161290322581 RFvsST 10057 695693088 695683032 no 87.3125210939132 TraesCS2B01G007600 chr2B_4644129 chr2B 4644129 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4644330 chr2B 4644330 C G C G 3 missense_variant MODERATE transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4645432 chr2B 4645432 C T C T 3 synonymous_variant LOW transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4644402 chr2B 4644402 A G A G 3 missense_variant MODERATE transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4643981 chr2B 4643981 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4645519 chr2B 4645519 C T C T 3 synonymous_variant LOW transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4643903 chr2B 4643903 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007600 chr2B_4644208 chr2B 4644208 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 4644215 4645528 1314 8 0.60882800608828 RFvsST 10057 695693088 695683032 no 165.348311033825 TraesCS2B01G007800 chr2B_4663156 chr2B 4663156 A A G G 4 missense_variant MODERATE transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4662750 chr2B 4662750 A A G G 4 missense_variant MODERATE transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663363 chr2B 4663363 A A C C 4 missense_variant MODERATE transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663265 chr2B 4663265 T T C C 4 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663112 chr2B 4663112 A A G G 4 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4662872 chr2B 4662872 T G T G 3 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663043 chr2B 4663043 A G A G 3 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663117 chr2B 4663117 T T C C 4 missense_variant MODERATE transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663001 chr2B 4663001 A G A G 3 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4662821 chr2B 4662821 G G A A 4 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4656576 chr2B 4656576 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663231 chr2B 4663231 A A C C 4 missense_variant MODERATE transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G007800 chr2B_4663025 chr2B 4663025 A A G G 4 synonymous_variant LOW transcript non_Triplet 4656500 4665574 9075 13 0.143250688705234 RFvsST 10057 695693088 695683032 no 203.088385686299 TraesCS2B01G008000 chr2B_4721579 chr2B 4721579 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4720611 chr2B 4720611 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721538 chr2B 4721538 G G T T 4 missense_variant MODERATE transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721113 chr2B 4721113 T C T C 3 intron_variant MODIFIER transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721568 chr2B 4721568 C C T T 4 missense_variant MODERATE transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721459 chr2B 4721459 G A G A 3 synonymous_variant LOW transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4720654 chr2B 4720654 A C A C 3 synonymous_variant LOW transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721238 chr2B 4721238 G T G T 3 intron_variant MODIFIER transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721381 chr2B 4721381 C G C G 3 synonymous_variant LOW transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721542 chr2B 4721542 C C T T 4 missense_variant MODERATE transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721243 chr2B 4721243 A G A G 3 intron_variant MODIFIER transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008000 chr2B_4721503 chr2B 4721503 G G T T 4 missense_variant MODERATE transcript non_Triplet 4720640 4721573 934 12 1.2847965738758 RFvsST 10057 695693088 695683032 no 51.9697177305361 TraesCS2B01G008900 chr2B_4985005 chr2B 4985005 A T A T 3 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985082 chr2B 4985082 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4987451 chr2B 4987451 C A C A 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984703 chr2B 4984703 T A T A 3 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4987421 chr2B 4987421 T T G G 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984950 chr2B 4984950 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4989215 chr2B 4989215 G G T T 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985301 chr2B 4985301 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985214 chr2B 4985214 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985253 chr2B 4985253 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984739 chr2B 4984739 T C T C 3 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984660 chr2B 4984660 T T C C 4 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985067 chr2B 4985067 G T G T 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4985235 chr2B 4985235 T A T A 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4988986 chr2B 4988986 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984977 chr2B 4984977 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984706 chr2B 4984706 G A G A 3 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4989083 chr2B 4989083 G G C C 4 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4990242 chr2B 4990242 A A G G 4 missense_variant MODERATE transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4988328 chr2B 4988328 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4989915 chr2B 4989915 C C T T 4 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4984830 chr2B 4984830 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4989933 chr2B 4989933 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4990665 chr2B 4990665 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4990423 chr2B 4990423 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G008900 chr2B_4989885 chr2B 4989885 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4984390 4990447 6058 26 0.429184549356223 RFvsST 10057 695693088 695683032 no 265.486236145166 TraesCS2B01G010200 chr2B_5664686 chr2B 5664686 A G A G 3 synonymous_variant LOW transcript non_Triplet 5661615 5667191 5577 3 0.0537923614846692 RFvsST 10057 695693088 695683032 no 221.714659308633 TraesCS2B01G010200 chr2B_5669517 chr2B 5669517 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 5661615 5667191 5577 3 0.0537923614846692 RFvsST 10057 695693088 695683032 no 221.714659308633 TraesCS2B01G010200 chr2B_5669166 chr2B 5669166 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 5661615 5667191 5577 3 0.0537923614846692 RFvsST 10057 695693088 695683032 no 221.714659308633 TraesCS2B01G010300 chr2B_5672791 chr2B 5672791 G A G A 3 missense_variant MODERATE transcript non_Triplet 5669529 5673046 3518 2 0.0568504832291074 RFvsST 10057 695693088 695683032 no 159.289299993923 TraesCS2B01G010300 chr2B_5672817 chr2B 5672817 G A G A 3 missense_variant MODERATE transcript non_Triplet 5669529 5673046 3518 2 0.0568504832291074 RFvsST 10057 695693088 695683032 no 159.289299993923 TraesCS2B01G012000 chr2B_6179029 chr2B 6179029 A G A G 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179380 chr2B 6179380 C T C T 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179762 chr2B 6179762 G T G T 3 missense_variant MODERATE transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179005 chr2B 6179005 C C G G 4 missense_variant MODERATE transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179326 chr2B 6179326 C A C A 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6178741 chr2B 6178741 G A G A 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179960 chr2B 6179960 G A G A 3 missense_variant MODERATE transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179906 chr2B 6179906 C C A A 4 missense_variant MODERATE transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179518 chr2B 6179518 G A G A 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179515 chr2B 6179515 C T C T 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179540 chr2B 6179540 C C T T 4 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179401 chr2B 6179401 C G C G 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179323 chr2B 6179323 G A G A 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012000 chr2B_6179413 chr2B 6179413 C G C G 3 synonymous_variant LOW transcript non_Triplet 6178582 6180252 1671 14 0.837821663674446 RFvsST 10057 695693088 695683032 no 320.770950297093 TraesCS2B01G012400 chr2B_6253828 chr2B 6253828 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 6253187 6253913 727 1 0.137551581843191 RFvsST 10057 695693088 695683032 no 198.03690883956 TraesCS2B01G012600 chr2B_6265504 chr2B 6265504 G G T T 4 synonymous_variant LOW transcript unique_Triplet 6263090 6265566 2477 2 0.080742834073476 RFvsST 10057 695693088 695683032 no 2709.82954162348 TraesCS2B01G012600 chr2B_6265687 chr2B 6265687 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6263090 6265566 2477 2 0.080742834073476 RFvsST 10057 695693088 695683032 no 2709.82954162348 TraesCS2B01G012800 chr2B_6307700 chr2B 6307700 G G C C 4 synonymous_variant LOW transcript unique_Triplet 6307617 6309289 1673 3 0.17931858936043 RFvsST 10057 695693088 695683032 no 86.8878753400909 TraesCS2B01G012800 chr2B_6309404 chr2B 6309404 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 6307617 6309289 1673 3 0.17931858936043 RFvsST 10057 695693088 695683032 no 86.8878753400909 TraesCS2B01G012800 chr2B_6309259 chr2B 6309259 C T C T 3 synonymous_variant LOW transcript unique_Triplet 6307617 6309289 1673 3 0.17931858936043 RFvsST 10057 695693088 695683032 no 86.8878753400909 TraesCS2B01G012900 chr2B_6313457 chr2B 6313457 C C T T 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311279 chr2B 6311279 G G A A 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6313447 chr2B 6313447 C C T T 4 missense_variant MODERATE transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6312609 chr2B 6312609 A A G G 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311393 chr2B 6311393 C C T T 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6312870 chr2B 6312870 T T A A 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311615 chr2B 6311615 C C T T 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311327 chr2B 6311327 G A G A 3 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311029 chr2B 6311029 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311270 chr2B 6311270 G G C C 4 synonymous_variant LOW transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G012900 chr2B_6311027 chr2B 6311027 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 6310993 6316291 5299 11 0.207586337044725 RFvsST 10057 695693088 695683032 no 36.2228155244094 TraesCS2B01G013500 chr2B_6712229 chr2B 6712229 A G A G 3 synonymous_variant LOW transcript non_Triplet 6711016 6715597 4582 1 0.0218245307725884 RFvsST 10057 695693088 695683032 no 25.4472352178252 TraesCS2B01G013600 chr2B_6718279 chr2B 6718279 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6718287 6719786 1500 1 0.0666666666666667 RFvsST 10057 695693088 695683032 no 9.47980039775243 TraesCS2B01G015500 chr2B_7431051 chr2B 7431051 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430798 chr2B 7430798 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430956 chr2B 7430956 T C T C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430630 chr2B 7430630 G A G A 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7436667 chr2B 7436667 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428928 chr2B 7428928 G A G A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430464 chr2B 7430464 C T C T 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429001 chr2B 7429001 T G T G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428880 chr2B 7428880 T C T C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430152 chr2B 7430152 C G C G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7431249 chr2B 7431249 T C T C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429700 chr2B 7429700 A T A T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435809 chr2B 7435809 A C A C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435364 chr2B 7435364 G C G C 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428641 chr2B 7428641 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7443106 chr2B 7443106 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428856 chr2B 7428856 C T C T 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428602 chr2B 7428602 A C A C 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428793 chr2B 7428793 G C G C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430146 chr2B 7430146 G A G A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7443043 chr2B 7443043 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435812 chr2B 7435812 G C G C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7431255 chr2B 7431255 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435627 chr2B 7435627 G A G A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7437081 chr2B 7437081 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428742 chr2B 7428742 C G C G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7428635 chr2B 7428635 G T G T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7436115 chr2B 7436115 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7443202 chr2B 7443202 G A G A 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7441951 chr2B 7441951 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430458 chr2B 7430458 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430398 chr2B 7430398 C T C T 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7433272 chr2B 7433272 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7431316 chr2B 7431316 T C T C 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429446 chr2B 7429446 G A G A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429545 chr2B 7429545 G A G A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430411 chr2B 7430411 A G A G 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435477 chr2B 7435477 T C T C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7434460 chr2B 7434460 G C G C 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435486 chr2B 7435486 T G T G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7432556 chr2B 7432556 C T C T 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7430249 chr2B 7430249 T G T G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7443200 chr2B 7443200 T A T A 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7432514 chr2B 7432514 G A G A 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7435803 chr2B 7435803 C T C T 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429566 chr2B 7429566 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429481 chr2B 7429481 C G C G 3 synonymous_variant LOW transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G015500 chr2B_7429616 chr2B 7429616 T G T G 3 missense_variant MODERATE transcript unique_Triplet 7428456 7443325 14870 48 0.322797579018157 RFvsST 10057 695693088 695683032 no 630.287197623867 TraesCS2B01G018600 chr2B_8595400 chr2B 8595400 A G A G 3 synonymous_variant LOW transcript non_Triplet 8592551 8596822 4272 4 0.0936329588014981 RFvsST 10057 695693088 695683032 no 2166.52931153868 TraesCS2B01G018600 chr2B_8594644 chr2B 8594644 C T C T 3 synonymous_variant LOW transcript non_Triplet 8592551 8596822 4272 4 0.0936329588014981 RFvsST 10057 695693088 695683032 no 2166.52931153868 TraesCS2B01G018600 chr2B_8594894 chr2B 8594894 A C A C 3 missense_variant MODERATE transcript non_Triplet 8592551 8596822 4272 4 0.0936329588014981 RFvsST 10057 695693088 695683032 no 2166.52931153868 TraesCS2B01G018600 chr2B_8593951 chr2B 8593951 C G C G 3 missense_variant MODERATE transcript non_Triplet 8592551 8596822 4272 4 0.0936329588014981 RFvsST 10057 695693088 695683032 no 2166.52931153868 TraesCS2B01G020400 chr2B_9740197 chr2B 9740197 G A G A 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 9731069 9740936 9868 4 0.0405350628293474 RFvsST 10057 695693088 695683032 no 95.5126661625602 TraesCS2B01G020400 chr2B_9739696 chr2B 9739696 C C G G 4 missense_variant MODERATE transcript non_Triplet 9731069 9740936 9868 4 0.0405350628293474 RFvsST 10057 695693088 695683032 no 95.5126661625602 TraesCS2B01G020400 chr2B_9730916 chr2B 9730916 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 9731069 9740936 9868 4 0.0405350628293474 RFvsST 10057 695693088 695683032 no 95.5126661625602 TraesCS2B01G020400 chr2B_9739764 chr2B 9739764 G G A A 4 synonymous_variant LOW transcript non_Triplet 9731069 9740936 9868 4 0.0405350628293474 RFvsST 10057 695693088 695683032 no 95.5126661625602 TraesCS2B01G021100 chr2B_10172216 chr2B 10172216 C C G G 4 missense_variant MODERATE transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172018 chr2B 10172018 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172373 chr2B 10172373 A A G G 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172319 chr2B 10172319 T T C C 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10173292 chr2B 10173292 G T G T 3 missense_variant MODERATE transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10177935 chr2B 10177935 C C G G 4 missense_variant MODERATE transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10174236 chr2B 10174236 A A G G 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172452 chr2B 10172452 G A G A 3 missense_variant MODERATE transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10171963 chr2B 10171963 C C A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10177783 chr2B 10177783 T T C C 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172140 chr2B 10172140 C C A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10178027 chr2B 10178027 G G C C 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10172229 chr2B 10172229 A A C C 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10174251 chr2B 10174251 T T A A 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10173327 chr2B 10173327 A A G G 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G021100 chr2B_10177378 chr2B 10177378 G G A A 4 synonymous_variant LOW transcript non_Triplet 10171622 10178688 7067 16 0.22640441488609 RFvsST 10057 695693088 695683032 no 274.180178499249 TraesCS2B01G022700 chr2B_10781566 chr2B 10781566 C T C T 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781965 chr2B 10781965 T C T C 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781506 chr2B 10781506 A C A C 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10784089 chr2B 10784089 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10784082 chr2B 10784082 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781368 chr2B 10781368 C G C G 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10784125 chr2B 10784125 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10784146 chr2B 10784146 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10784005 chr2B 10784005 A G A G 3 splice_region_variant&stop_retained_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781896 chr2B 10781896 G C G C 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781563 chr2B 10781563 G A G A 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781374 chr2B 10781374 G A G A 3 synonymous_variant LOW transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10785078 chr2B 10785078 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022700 chr2B_10781456 chr2B 10781456 G A G A 3 missense_variant MODERATE transcript unique_Triplet 10781297 10784006 2710 14 0.516605166051661 RFvsST 10057 695693088 695683032 no 213.35819242653 TraesCS2B01G022800 chr2B_10785601 chr2B 10785601 A G A G 3 synonymous_variant LOW transcript unique_Triplet 10785088 10786170 1083 4 0.369344413665743 RFvsST 10057 695693088 695683032 no 52.2736470700718 TraesCS2B01G022800 chr2B_10786156 chr2B 10786156 G A G A 3 synonymous_variant LOW transcript unique_Triplet 10785088 10786170 1083 4 0.369344413665743 RFvsST 10057 695693088 695683032 no 52.2736470700718 TraesCS2B01G022800 chr2B_10787456 chr2B 10787456 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 10785088 10786170 1083 4 0.369344413665743 RFvsST 10057 695693088 695683032 no 52.2736470700718 TraesCS2B01G022800 chr2B_10785445 chr2B 10785445 A G A G 3 synonymous_variant LOW transcript unique_Triplet 10785088 10786170 1083 4 0.369344413665743 RFvsST 10057 695693088 695683032 no 52.2736470700718 TraesCS2B01G023800 chr2B_11076345 chr2B 11076345 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11075382 chr2B 11075382 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11077140 chr2B 11077140 T G T G 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11076786 chr2B 11076786 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11077371 chr2B 11077371 A G A G 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11076112 chr2B 11076112 A G A G 3 missense_variant MODERATE transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11077332 chr2B 11077332 C T C T 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11076936 chr2B 11076936 C G C G 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11078725 chr2B 11078725 C G C G 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023800 chr2B_11076708 chr2B 11076708 C G C G 3 synonymous_variant LOW transcript unique_Triplet 11076085 11079004 2920 10 0.342465753424658 RFvsST 10057 695693088 695683032 no 153.866256172922 TraesCS2B01G023900 chr2B_11088519 chr2B 11088519 T G T G 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11088547 chr2B 11088547 G A G A 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11085578 chr2B 11085578 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11089405 chr2B 11089405 T C T C 3 synonymous_variant LOW transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11088068 chr2B 11088068 G T G T 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11089366 chr2B 11089366 A G A G 3 synonymous_variant LOW transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11082332 chr2B 11082332 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11084788 chr2B 11084788 A G A G 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11089116 chr2B 11089116 T C T C 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11083990 chr2B 11083990 A G A G 3 missense_variant MODERATE transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G023900 chr2B_11085253 chr2B 11085253 C T C T 3 synonymous_variant LOW transcript unique_Triplet 11082089 11090077 7989 11 0.137689322818876 RFvsST 10057 695693088 695683032 no 27.9414962471505 TraesCS2B01G024400 chr2B_11292432 chr2B 11292432 T C T C 3 missense_variant MODERATE transcript unique_Triplet 11286988 11292831 5844 1 0.0171115674195756 RFvsST 10057 695693088 695683032 no 114.604044532083 TraesCS2B01G024500 chr2B_11360028 chr2B 11360028 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11359042 11363629 4588 1 0.021795989537925 RFvsST 10057 695693088 695683032 no 100.260326791811 TraesCS2B01G024600 chr2B_11390119 chr2B 11390119 C T C T 3 missense_variant MODERATE transcript non_Triplet 11389561 11391018 1458 2 0.137174211248285 RFvsST 10057 695693088 695683032 no 147.343854173686 TraesCS2B01G024600 chr2B_11390064 chr2B 11390064 C T C T 3 synonymous_variant LOW transcript non_Triplet 11389561 11391018 1458 2 0.137174211248285 RFvsST 10057 695693088 695683032 no 147.343854173686 TraesCS2B01G036200 chr2B_17239417 chr2B 17239417 C C G G 4 synonymous_variant LOW transcript non_Triplet 17237518 17239422 1905 3 0.15748031496063 RFvsST 10057 695693088 695683032 no 23.6643429534832 TraesCS2B01G036200 chr2B_17239457 chr2B 17239457 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 17237518 17239422 1905 3 0.15748031496063 RFvsST 10057 695693088 695683032 no 23.6643429534832 TraesCS2B01G036200 chr2B_17239478 chr2B 17239478 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 17237518 17239422 1905 3 0.15748031496063 RFvsST 10057 695693088 695683032 no 23.6643429534832 TraesCS2B01G036600 chr2B_17391234 chr2B 17391234 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17389535 chr2B 17389535 T C T C 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17389532 chr2B 17389532 T C T C 3 missense_variant MODERATE transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17391259 chr2B 17391259 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17390978 chr2B 17390978 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17390883 chr2B 17390883 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17391262 chr2B 17391262 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17391221 chr2B 17391221 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G036600 chr2B_17390745 chr2B 17390745 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 17389096 17390416 1321 9 0.681302043906132 RFvsST 10057 695693088 695683032 no 591.576496222233 TraesCS2B01G037100 chr2B_17453599 chr2B 17453599 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 17447762 17450697 2936 5 0.170299727520436 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G037100 chr2B_17453590 chr2B 17453590 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 17447762 17450697 2936 5 0.170299727520436 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G037100 chr2B_17453642 chr2B 17453642 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 17447762 17450697 2936 5 0.170299727520436 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G037100 chr2B_17453212 chr2B 17453212 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 17447762 17450697 2936 5 0.170299727520436 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G037100 chr2B_17453196 chr2B 17453196 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 17447762 17450697 2936 5 0.170299727520436 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G038200 chr2B_17781006 chr2B 17781006 G A G A 3 synonymous_variant LOW transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17783601 chr2B 17783601 G C G C 3 missense_variant MODERATE transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17779924 chr2B 17779924 C T C T 3 missense_variant MODERATE transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17780220 chr2B 17780220 G C G C 3 synonymous_variant LOW transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17787775 chr2B 17787775 T G T G 3 missense_variant MODERATE transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17783487 chr2B 17783487 C T C T 3 synonymous_variant LOW transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038200 chr2B_17788051 chr2B 17788051 A G A G 3 synonymous_variant LOW transcript unique_Triplet 17779264 17795470 16207 7 0.0431912136731042 RFvsST 10057 695693088 695683032 no 67.1637401746841 TraesCS2B01G038600 chr2B_17873519 chr2B 17873519 G A G A 3 synonymous_variant LOW transcript non_Triplet 17872499 17874076 1578 4 0.253485424588086 RFvsST 10057 695693088 695683032 no 323.937715805709 TraesCS2B01G038600 chr2B_17872681 chr2B 17872681 C G C G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 17872499 17874076 1578 4 0.253485424588086 RFvsST 10057 695693088 695683032 no 323.937715805709 TraesCS2B01G038600 chr2B_17873186 chr2B 17873186 C T C T 3 synonymous_variant LOW transcript non_Triplet 17872499 17874076 1578 4 0.253485424588086 RFvsST 10057 695693088 695683032 no 323.937715805709 TraesCS2B01G038600 chr2B_17873553 chr2B 17873553 C G C G 3 missense_variant MODERATE transcript non_Triplet 17872499 17874076 1578 4 0.253485424588086 RFvsST 10057 695693088 695683032 no 323.937715805709 TraesCS2B01G039900 chr2B_18175122 chr2B 18175122 C G C G 3 missense_variant MODERATE transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G039900 chr2B_18176512 chr2B 18176512 C T C T 3 synonymous_variant LOW transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G039900 chr2B_18176306 chr2B 18176306 A C A C 3 missense_variant MODERATE transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G039900 chr2B_18176305 chr2B 18176305 C A C A 3 missense_variant MODERATE transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G039900 chr2B_18176463 chr2B 18176463 A G A G 3 missense_variant MODERATE transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G039900 chr2B_18176414 chr2B 18176414 A G A G 3 missense_variant MODERATE transcript non_Triplet 18174920 18176880 1961 6 0.305966343702193 RFvsST 10057 695693088 695683032 no 97.3543396278094 TraesCS2B01G040000 chr2B_18177788 chr2B 18177788 C T C T 3 missense_variant MODERATE transcript unique_Triplet 18177342 18178571 1230 1 0.0813008130081301 RFvsST 10057 695693088 695683032 no 113.747962829367 TraesCS2B01G040200 chr2B_18263358 chr2B 18263358 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 18260788 18263434 2647 1 0.0377786173026067 RFvsST 10057 695693088 695683032 no 284.983022326496 TraesCS2B01G040300 chr2B_18273222 chr2B 18273222 A G A G 3 synonymous_variant LOW transcript unique_Triplet 18264485 18275944 11460 4 0.0349040139616056 RFvsST 10057 695693088 695683032 no 5.75731643516706 TraesCS2B01G040300 chr2B_18276618 chr2B 18276618 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 18264485 18275944 11460 4 0.0349040139616056 RFvsST 10057 695693088 695683032 no 5.75731643516706 TraesCS2B01G040300 chr2B_18265381 chr2B 18265381 G A G A 3 synonymous_variant LOW transcript unique_Triplet 18264485 18275944 11460 4 0.0349040139616056 RFvsST 10057 695693088 695683032 no 5.75731643516706 TraesCS2B01G040300 chr2B_18265083 chr2B 18265083 A G A G 3 missense_variant MODERATE transcript unique_Triplet 18264485 18275944 11460 4 0.0349040139616056 RFvsST 10057 695693088 695683032 no 5.75731643516706 TraesCS2B01G041600 chr2B_18941551 chr2B 18941551 G G A A 4 missense_variant MODERATE transcript non_Triplet 18938085 18947686 9602 5 0.0520724848989794 RFvsST 10057 695693088 695683032 no 41.6405164281374 TraesCS2B01G041600 chr2B_18939259 chr2B 18939259 T C T C 3 synonymous_variant LOW transcript non_Triplet 18938085 18947686 9602 5 0.0520724848989794 RFvsST 10057 695693088 695683032 no 41.6405164281374 TraesCS2B01G041600 chr2B_18945552 chr2B 18945552 C T C T 3 synonymous_variant LOW transcript non_Triplet 18938085 18947686 9602 5 0.0520724848989794 RFvsST 10057 695693088 695683032 no 41.6405164281374 TraesCS2B01G041600 chr2B_18939220 chr2B 18939220 T C T C 3 synonymous_variant LOW transcript non_Triplet 18938085 18947686 9602 5 0.0520724848989794 RFvsST 10057 695693088 695683032 no 41.6405164281374 TraesCS2B01G041600 chr2B_18945539 chr2B 18945539 A A G G 4 missense_variant MODERATE transcript non_Triplet 18938085 18947686 9602 5 0.0520724848989794 RFvsST 10057 695693088 695683032 no 41.6405164281374 TraesCS2B01G041900 chr2B_19068630 chr2B 19068630 A A G G 4 missense_variant MODERATE transcript non_Triplet 19065607 19070652 5046 1 0.0198176773682124 RFvsST 10057 695693088 695683032 no 31.0469278834472 TraesCS2B01G045900 chr2B_23019681 chr2B 23019681 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019650 chr2B 23019650 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019850 chr2B 23019850 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019914 chr2B 23019914 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019779 chr2B 23019779 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019821 chr2B 23019821 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019889 chr2B 23019889 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23020092 chr2B 23020092 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019632 chr2B 23019632 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019725 chr2B 23019725 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23020158 chr2B 23020158 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23019957 chr2B 23019957 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23020026 chr2B 23020026 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G045900 chr2B_23020341 chr2B 23020341 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 23012474 23016447 3974 14 0.352289884247609 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G046000 chr2B_23020556 chr2B 23020556 A A G G 4 synonymous_variant LOW transcript non_Triplet 23020418 23022244 1827 1 0.0547345374931582 RFvsST 10057 695693088 695683032 no 437.982960317783 TraesCS2B01G046400 chr2B_23106328 chr2B 23106328 A G A G 3 missense_variant MODERATE transcript non_Triplet 23106305 23110142 3838 1 0.0260552371026576 RFvsST 10057 695693088 695683032 no 27.8361417743569 TraesCS2B01G047300 chr2B_23576563 chr2B 23576563 C C T T 4 synonymous_variant LOW transcript unique_Triplet 23576111 23577420 1310 1 0.0763358778625954 RFvsST 10057 695693088 695683032 no 127.728439345522 TraesCS2B01G049600 chr2B_24674402 chr2B 24674402 G G A A 4 missense_variant MODERATE transcript unique_Triplet 24673971 24677519 3549 3 0.084530853761623 RFvsST 10057 695693088 695683032 no 3.90303839605988 TraesCS2B01G049600 chr2B_24677561 chr2B 24677561 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 24673971 24677519 3549 3 0.084530853761623 RFvsST 10057 695693088 695683032 no 3.90303839605988 TraesCS2B01G049600 chr2B_24673899 chr2B 24673899 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 24673971 24677519 3549 3 0.084530853761623 RFvsST 10057 695693088 695683032 no 3.90303839605988 TraesCS2B01G050500 chr2B_24921129 chr2B 24921129 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 24914978 24920271 5294 1 0.0188893086513034 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G050900 chr2B_24987651 chr2B 24987651 T T G G 4 synonymous_variant LOW transcript non_Triplet 24987456 24988692 1237 2 0.161681487469685 RFvsST 10057 695693088 695683032 no 330.568934567737 TraesCS2B01G050900 chr2B_24987627 chr2B 24987627 G G A A 4 synonymous_variant LOW transcript non_Triplet 24987456 24988692 1237 2 0.161681487469685 RFvsST 10057 695693088 695683032 no 330.568934567737 TraesCS2B01G051000 chr2B_25021820 chr2B 25021820 G G A A 4 synonymous_variant LOW transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25021311 chr2B 25021311 G G T T 4 missense_variant MODERATE transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25017801 chr2B 25017801 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25019247 chr2B 25019247 T T C C 4 missense_variant MODERATE transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25021826 chr2B 25021826 G G A A 4 synonymous_variant LOW transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25021434 chr2B 25021434 C C T T 4 synonymous_variant LOW transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25023432 chr2B 25023432 T T G G 4 missense_variant MODERATE transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051000 chr2B_25025475 chr2B 25025475 T T C C 4 missense_variant MODERATE transcript unique_Triplet 25017966 25027451 9486 8 0.0843348091924942 RFvsST 10057 695693088 695683032 no 103.126838561334 TraesCS2B01G051100 chr2B_25070108 chr2B 25070108 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 25069046 25070257 1212 1 0.0825082508250825 RFvsST 10057 695693088 695683032 no 90.7520469577484 TraesCS2B01G051500 chr2B_25241598 chr2B 25241598 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 25235530 25239318 3789 1 0.0263921879123779 RFvsST 10057 695693088 695683032 no 69.8126768132451 TraesCS2B01G051600 chr2B_25242456 chr2B 25242456 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 25246679 25251560 4882 2 0.0409668168783286 RFvsST 10057 695693088 695683032 no 33.4750661039022 TraesCS2B01G051600 chr2B_25251365 chr2B 25251365 C C T T 4 synonymous_variant LOW transcript unique_Triplet 25246679 25251560 4882 2 0.0409668168783286 RFvsST 10057 695693088 695683032 no 33.4750661039022 TraesCS2B01G051700 chr2B_25258815 chr2B 25258815 C C G G 4 synonymous_variant LOW transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G051700 chr2B_25256972 chr2B 25256972 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G051700 chr2B_25258524 chr2B 25258524 C C T T 4 synonymous_variant LOW transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G051700 chr2B_25257198 chr2B 25257198 T T C C 4 synonymous_variant LOW transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G051700 chr2B_25258548 chr2B 25258548 C C T T 4 synonymous_variant LOW transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G051700 chr2B_25257230 chr2B 25257230 C C T T 4 missense_variant MODERATE transcript non_Triplet 25257102 25259849 2748 6 0.218340611353712 RFvsST 10057 695693088 695683032 no 70.2103225500758 TraesCS2B01G052500 chr2B_25669806 chr2B 25669806 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 25672494 25688998 16505 1 0.00605877006967586 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G053100 chr2B_26103730 chr2B 26103730 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 26103742 26106283 2542 3 0.11801730920535 RFvsST 10057 695693088 695683032 no 60.9829161306392 TraesCS2B01G053100 chr2B_26103735 chr2B 26103735 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 26103742 26106283 2542 3 0.11801730920535 RFvsST 10057 695693088 695683032 no 60.9829161306392 TraesCS2B01G053100 chr2B_26109277 chr2B 26109277 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 26103742 26106283 2542 3 0.11801730920535 RFvsST 10057 695693088 695683032 no 60.9829161306392 TraesCS2B01G058600 chr2B_28451474 chr2B 28451474 C G C G 3 missense_variant MODERATE transcript non_Triplet 28451437 28452747 1311 2 0.15255530129672 RFvsST 10057 695693088 695683032 no 120.534707993248 TraesCS2B01G058600 chr2B_28451458 chr2B 28451458 T C T C 3 synonymous_variant LOW transcript non_Triplet 28451437 28452747 1311 2 0.15255530129672 RFvsST 10057 695693088 695683032 no 120.534707993248 TraesCS2B01G076200 chr2B_41145361 chr2B 41145361 C C T T 4 missense_variant MODERATE transcript unique_Triplet 41144682 41148118 3437 1 0.0290951411114344 RFvsST 10057 695693088 695683032 no 102.995282447747 TraesCS2B01G076900 chr2B_42143497 chr2B 42143497 G G C C 4 missense_variant MODERATE transcript non_Triplet 42143220 42153135 9916 1 0.0100847115772489 RFvsST 10057 695693088 695683032 no 903.720455671074 TraesCS2B01G077300 chr2B_42942622 chr2B 42942622 A A G G 4 synonymous_variant LOW transcript unique_Triplet 42941720 42955142 13423 1 0.00744989942635774 RFvsST 10057 695693088 695683032 no 102.170625434312 TraesCS2B01G079900 chr2B_44420260 chr2B 44420260 T T C C 4 synonymous_variant LOW transcript non_Triplet 44419976 44422840 2865 5 0.174520069808028 RFvsST 10057 695693088 695683032 no 26.4798032791265 TraesCS2B01G079900 chr2B_44419911 chr2B 44419911 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 44419976 44422840 2865 5 0.174520069808028 RFvsST 10057 695693088 695683032 no 26.4798032791265 TraesCS2B01G079900 chr2B_44420248 chr2B 44420248 C C T T 4 synonymous_variant LOW transcript non_Triplet 44419976 44422840 2865 5 0.174520069808028 RFvsST 10057 695693088 695683032 no 26.4798032791265 TraesCS2B01G079900 chr2B_44420081 chr2B 44420081 C C T T 4 synonymous_variant LOW transcript non_Triplet 44419976 44422840 2865 5 0.174520069808028 RFvsST 10057 695693088 695683032 no 26.4798032791265 TraesCS2B01G079900 chr2B_44424336 chr2B 44424336 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 44419976 44422840 2865 5 0.174520069808028 RFvsST 10057 695693088 695683032 no 26.4798032791265 TraesCS2B01G080000 chr2B_44424745 chr2B 44424745 C C T T 4 synonymous_variant LOW transcript unique_Triplet 44424580 44429196 4617 3 0.0649772579597141 RFvsST 10057 695693088 695683032 no 176.254020116636 TraesCS2B01G080000 chr2B_44426595 chr2B 44426595 A A G G 4 synonymous_variant LOW transcript unique_Triplet 44424580 44429196 4617 3 0.0649772579597141 RFvsST 10057 695693088 695683032 no 176.254020116636 TraesCS2B01G080000 chr2B_44426840 chr2B 44426840 C C T T 4 synonymous_variant LOW transcript unique_Triplet 44424580 44429196 4617 3 0.0649772579597141 RFvsST 10057 695693088 695683032 no 176.254020116636 TraesCS2B01G080200 chr2B_44751724 chr2B 44751724 T T C C 4 missense_variant MODERATE transcript non_Triplet 44751440 44754390 2951 1 0.0338868180277872 RFvsST 10057 695693088 695683032 no 116.182442055768 TraesCS2B01G080400 chr2B_44919566 chr2B 44919566 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080400 chr2B_44922101 chr2B 44922101 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080400 chr2B_44922952 chr2B 44922952 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080400 chr2B_44921422 chr2B 44921422 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080400 chr2B_44919670 chr2B 44919670 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080400 chr2B_44920598 chr2B 44920598 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 44924489 44927743 3255 6 0.184331797235023 RFvsST 10057 695693088 695683032 no 25.0363623768891 TraesCS2B01G080700 chr2B_45040844 chr2B 45040844 T T A A 4 missense_variant MODERATE transcript non_Triplet 45037930 45041307 3378 1 0.029603315571344 RFvsST 10057 695693088 695683032 no 220.792034297835 TraesCS2B01G081100 chr2B_45536243 chr2B 45536243 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 45536295 45537664 1370 2 0.145985401459854 RFvsST 10057 695693088 695683032 no 74.9868351333294 TraesCS2B01G081100 chr2B_45536325 chr2B 45536325 T T G G 4 missense_variant MODERATE transcript non_Triplet 45536295 45537664 1370 2 0.145985401459854 RFvsST 10057 695693088 695683032 no 74.9868351333294 TraesCS2B01G081300 chr2B_45550070 chr2B 45550070 G G T T 4 synonymous_variant LOW transcript non_Triplet 45550029 45553316 3288 1 0.0304136253041363 RFvsST 10057 695693088 695683032 no 194.126818630966 TraesCS2B01G082500 chr2B_45787845 chr2B 45787845 T T G G 4 missense_variant MODERATE transcript unique_Triplet 45787482 45799654 12173 2 0.0164298036638462 RFvsST 10057 695693088 695683032 no 636.495685916033 TraesCS2B01G082500 chr2B_45788713 chr2B 45788713 A A C C 4 synonymous_variant LOW transcript unique_Triplet 45787482 45799654 12173 2 0.0164298036638462 RFvsST 10057 695693088 695683032 no 636.495685916033 TraesCS2B01G083800 chr2B_46882602 chr2B 46882602 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 46876937 46882380 5444 1 0.0183688464364438 RFvsST 10057 695693088 695683032 no 84.3286465133231 TraesCS2B01G084100 chr2B_47157986 chr2B 47157986 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 47154993 47157722 2730 1 0.0366300366300366 RFvsST 10057 695693088 695683032 no 198.956739653002 TraesCS2B01G085100 chr2B_47522207 chr2B 47522207 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 47519328 47522198 2871 1 0.0348310693138279 RFvsST 10057 695693088 695683032 no 28.5811056919516 TraesCS2B01G086800 chr2B_49103896 chr2B 49103896 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 49081902 49099231 17330 1 0.00577034045008655 RFvsST 10057 695693088 695683032 no 128.598090551676 TraesCS2B01G086900 chr2B_49100009 chr2B 49100009 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 49100598 49103786 3189 3 0.0940733772342427 RFvsST 10057 695693088 695683032 no 75.7224626960402 TraesCS2B01G086900 chr2B_49101644 chr2B 49101644 C C T T 4 synonymous_variant LOW transcript unique_Triplet 49100598 49103786 3189 3 0.0940733772342427 RFvsST 10057 695693088 695683032 no 75.7224626960402 TraesCS2B01G086900 chr2B_49103506 chr2B 49103506 C C T T 4 synonymous_variant LOW transcript unique_Triplet 49100598 49103786 3189 3 0.0940733772342427 RFvsST 10057 695693088 695683032 no 75.7224626960402 TraesCS2B01G087500 chr2B_49488207 chr2B 49488207 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 49485190 49485927 738 1 0.13550135501355 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G091700 chr2B_52911796 chr2B 52911796 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 52906522 52910523 4002 1 0.0249875062468766 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G091800 chr2B_52911848 chr2B 52911848 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 52911807 52915221 3415 1 0.0292825768667643 RFvsST 10057 695693088 695683032 no 122.299327127712 TraesCS2B01G092700 chr2B_53472707 chr2B 53472707 G C G C 3 missense_variant MODERATE transcript unique_Triplet 53464913 53472738 7826 1 0.0127779197546639 RFvsST 10057 695693088 695683032 no 16.007787727313 TraesCS2B01G094800 chr2B_54778663 chr2B 54778663 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 54778765 54781219 2455 1 0.0407331975560081 RFvsST 10057 695693088 695683032 no 59.6681739905362 TraesCS2B01G096600 chr2B_56784859 chr2B 56784859 A G A G 3 missense_variant MODERATE transcript non_Triplet 56784677 56786813 2137 1 0.0467945718296678 RFvsST 10057 695693088 695683032 no 110.109670217018 TraesCS2B01G097300 chr2B_57654214 chr2B 57654214 C T C T 3 synonymous_variant LOW transcript non_Triplet 57652933 57654925 1993 2 0.100351229302559 RFvsST 10057 695693088 695683032 no 1819.14040835269 TraesCS2B01G097300 chr2B_57654196 chr2B 57654196 C T C T 3 synonymous_variant LOW transcript non_Triplet 57652933 57654925 1993 2 0.100351229302559 RFvsST 10057 695693088 695683032 no 1819.14040835269 TraesCS2B01G098500 chr2B_58324948 chr2B 58324948 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G098500 chr2B_58322395 chr2B 58322395 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G098500 chr2B_58321611 chr2B 58321611 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G098500 chr2B_58322927 chr2B 58322927 A T A T 3 synonymous_variant LOW transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G098500 chr2B_58322406 chr2B 58322406 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G098500 chr2B_58321555 chr2B 58321555 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 58321448 58324897 3450 6 0.173913043478261 RFvsST 10057 695693088 695683032 no 488.158348012816 TraesCS2B01G101700 chr2B_62555902 chr2B 62555902 G A G A 3 missense_variant MODERATE transcript unique_Triplet 62550051 62556130 6080 1 0.0164473684210526 RFvsST 10057 695693088 695683032 no 62.3555427833689 TraesCS2B01G104200 chr2B_64988290 chr2B 64988290 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 64987774 64990271 2498 1 0.0400320256204964 RFvsST 10057 695693088 695683032 no 473.798661891158 TraesCS2B01G107200 chr2B_68220309 chr2B 68220309 T C T C 3 missense_variant MODERATE transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G107200 chr2B_68220785 chr2B 68220785 G A G A 3 missense_variant MODERATE transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G107200 chr2B_68225451 chr2B 68225451 G A G A 3 missense_variant MODERATE transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G107200 chr2B_68219192 chr2B 68219192 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G107200 chr2B_68220572 chr2B 68220572 A G A G 3 missense_variant MODERATE transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G107200 chr2B_68223859 chr2B 68223859 C T C T 3 missense_variant MODERATE transcript unique_Triplet 68219339 68228302 8964 6 0.0669344042838019 RFvsST 10057 695693088 695683032 no 281.215363666562 TraesCS2B01G108100 chr2B_69040965 chr2B 69040965 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 69034765 69035988 1224 2 0.163398692810458 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G108100 chr2B_69040949 chr2B 69040949 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 69034765 69035988 1224 2 0.163398692810458 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G108200 chr2B_69044131 chr2B 69044131 T A T A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 69041027 69044118 3092 1 0.0323415265200517 RFvsST 10057 695693088 695683032 no 117.370703172526 TraesCS2B01G108800 chr2B_69411751 chr2B 69411751 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69414107 chr2B 69414107 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69410759 chr2B 69410759 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69411709 chr2B 69411709 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69411716 chr2B 69411716 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69410086 chr2B 69410086 T C T C 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69410862 chr2B 69410862 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69412411 chr2B 69412411 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69412706 chr2B 69412706 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69411288 chr2B 69411288 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69414001 chr2B 69414001 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69412447 chr2B 69412447 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69411790 chr2B 69411790 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69414814 chr2B 69414814 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69411277 chr2B 69411277 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69410928 chr2B 69410928 A T A T 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69410932 chr2B 69410932 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69413396 chr2B 69413396 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69412728 chr2B 69412728 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69414661 chr2B 69414661 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69413690 chr2B 69413690 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G108800 chr2B_69413781 chr2B 69413781 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 69410084 69414973 4890 22 0.449897750511247 RFvsST 10057 695693088 695683032 no 649.323482013507 TraesCS2B01G110800 chr2B_72605656 chr2B 72605656 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 72608873 72619828 10956 4 0.0365096750638919 RFvsST 10057 695693088 695683032 no 72.9701610101398 TraesCS2B01G110800 chr2B_72604367 chr2B 72604367 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 72608873 72619828 10956 4 0.0365096750638919 RFvsST 10057 695693088 695683032 no 72.9701610101398 TraesCS2B01G110800 chr2B_72604429 chr2B 72604429 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 72608873 72619828 10956 4 0.0365096750638919 RFvsST 10057 695693088 695683032 no 72.9701610101398 TraesCS2B01G110800 chr2B_72610551 chr2B 72610551 C T C T 3 missense_variant MODERATE transcript unique_Triplet 72608873 72619828 10956 4 0.0365096750638919 RFvsST 10057 695693088 695683032 no 72.9701610101398 TraesCS2B01G111000 chr2B_72816843 chr2B 72816843 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72811312 chr2B 72811312 T C T C 3 missense_variant MODERATE transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72816323 chr2B 72816323 C T C T 3 missense_variant MODERATE transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72816211 chr2B 72816211 C T C T 3 synonymous_variant LOW transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72811846 chr2B 72811846 T C T C 3 synonymous_variant LOW transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72811825 chr2B 72811825 T C T C 3 synonymous_variant LOW transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72815939 chr2B 72815939 C T C T 3 synonymous_variant LOW transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72816412 chr2B 72816412 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111000 chr2B_72816291 chr2B 72816291 C T C T 3 missense_variant MODERATE transcript unique_Triplet 72811140 72816340 5201 9 0.173043645452798 RFvsST 10057 695693088 695683032 no 84.5819906655984 TraesCS2B01G111400 chr2B_73369059 chr2B 73369059 T C T C 3 synonymous_variant LOW transcript unique_Triplet 73365314 73371301 5988 1 0.0167000668002672 RFvsST 10057 695693088 695683032 no 12.7462954501222 TraesCS2B01G112000 chr2B_74246688 chr2B 74246688 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 74247264 74252163 4900 4 0.0816326530612245 RFvsST 10057 695693088 695683032 no 72.5413262783833 TraesCS2B01G112000 chr2B_74246673 chr2B 74246673 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 74247264 74252163 4900 4 0.0816326530612245 RFvsST 10057 695693088 695683032 no 72.5413262783833 TraesCS2B01G112000 chr2B_74247859 chr2B 74247859 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 74247264 74252163 4900 4 0.0816326530612245 RFvsST 10057 695693088 695683032 no 72.5413262783833 TraesCS2B01G112000 chr2B_74250999 chr2B 74250999 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 74247264 74252163 4900 4 0.0816326530612245 RFvsST 10057 695693088 695683032 no 72.5413262783833 TraesCS2B01G112200 chr2B_75606698 chr2B 75606698 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 75609593 75614897 5305 1 0.0188501413760603 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G113100 chr2B_76489582 chr2B 76489582 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 76488184 76488990 807 4 0.495662949194548 RFvsST 10057 695693088 695683032 no 144.262224743017 TraesCS2B01G113100 chr2B_76489661 chr2B 76489661 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 76488184 76488990 807 4 0.495662949194548 RFvsST 10057 695693088 695683032 no 144.262224743017 TraesCS2B01G113100 chr2B_76488702 chr2B 76488702 A G A G 3 missense_variant MODERATE transcript non_Triplet 76488184 76488990 807 4 0.495662949194548 RFvsST 10057 695693088 695683032 no 144.262224743017 TraesCS2B01G113100 chr2B_76488826 chr2B 76488826 A G A G 3 synonymous_variant LOW transcript non_Triplet 76488184 76488990 807 4 0.495662949194548 RFvsST 10057 695693088 695683032 no 144.262224743017 TraesCS2B01G113200 chr2B_76817743 chr2B 76817743 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 76817014 76822426 5413 1 0.0184740439682246 RFvsST 10057 695693088 695683032 no 269.486858852572 TraesCS2B01G113300 chr2B_76888063 chr2B 76888063 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 76884204 76887996 3793 2 0.0527287107830214 RFvsST 10057 695693088 695683032 no 51.5336490585241 TraesCS2B01G113300 chr2B_76884089 chr2B 76884089 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 76884204 76887996 3793 2 0.0527287107830214 RFvsST 10057 695693088 695683032 no 51.5336490585241 TraesCS2B01G113500 chr2B_76916870 chr2B 76916870 A G A G 3 synonymous_variant LOW transcript unique_Triplet 76916750 76920278 3529 5 0.14168319637291 RFvsST 10057 695693088 695683032 no 118.557376859541 TraesCS2B01G113500 chr2B_76918161 chr2B 76918161 A G A G 3 synonymous_variant LOW transcript unique_Triplet 76916750 76920278 3529 5 0.14168319637291 RFvsST 10057 695693088 695683032 no 118.557376859541 TraesCS2B01G113500 chr2B_76918490 chr2B 76918490 T C T C 3 missense_variant MODERATE transcript unique_Triplet 76916750 76920278 3529 5 0.14168319637291 RFvsST 10057 695693088 695683032 no 118.557376859541 TraesCS2B01G113500 chr2B_76916809 chr2B 76916809 C T C T 3 missense_variant MODERATE transcript unique_Triplet 76916750 76920278 3529 5 0.14168319637291 RFvsST 10057 695693088 695683032 no 118.557376859541 TraesCS2B01G113500 chr2B_76919247 chr2B 76919247 G T G T 3 synonymous_variant LOW transcript unique_Triplet 76916750 76920278 3529 5 0.14168319637291 RFvsST 10057 695693088 695683032 no 118.557376859541 TraesCS2B01G113800 chr2B_77173029 chr2B 77173029 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 77168978 77170670 1693 1 0.0590667454223272 RFvsST 10057 695693088 695683032 no 573.834650711827 TraesCS2B01G114000 chr2B_77176273 chr2B 77176273 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 77173356 77176389 3034 2 0.0659195781147001 RFvsST 10057 695693088 695683032 no 10.5332972477294 TraesCS2B01G114000 chr2B_77174828 chr2B 77174828 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 77173356 77176389 3034 2 0.0659195781147001 RFvsST 10057 695693088 695683032 no 10.5332972477294 TraesCS2B01G116900 chr2B_80121515 chr2B 80121515 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 80120623 80122681 2059 1 0.0485672656629432 RFvsST 10057 695693088 695683032 no 256.321795274111 TraesCS2B01G119700 chr2B_87354360 chr2B 87354360 A A G G 4 synonymous_variant LOW transcript unique_Triplet 87350900 87356103 5204 1 0.0192159877017679 RFvsST 10057 695693088 695683032 no 1029.87537640079 TraesCS2B01G120100 chr2B_87843289 chr2B 87843289 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 87841228 87842668 1441 1 0.0693962526023595 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G120800 chr2B_88428205 chr2B 88428205 G G A A 4 missense_variant MODERATE transcript unique_Triplet 88424049 88431392 7344 1 0.0136165577342048 RFvsST 10057 695693088 695683032 no 828.18559568907 TraesCS2B01G121500 chr2B_88930855 chr2B 88930855 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 88930677 88932632 1956 1 0.0511247443762781 RFvsST 10057 695693088 695683032 no 82.5874565508663 TraesCS2B01G122300 chr2B_89551205 chr2B 89551205 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 89551229 89553111 1883 1 0.0531067445565587 RFvsST 10057 695693088 695683032 no 25.2686552171403 TraesCS2B01G122500 chr2B_89703979 chr2B 89703979 A A G G 4 missense_variant MODERATE transcript unique_Triplet 89702400 89709312 6913 3 0.0433964993490525 RFvsST 10057 695693088 695683032 no 749.03366809529 TraesCS2B01G122500 chr2B_89704016 chr2B 89704016 T T G G 4 synonymous_variant LOW transcript unique_Triplet 89702400 89709312 6913 3 0.0433964993490525 RFvsST 10057 695693088 695683032 no 749.03366809529 TraesCS2B01G122500 chr2B_89703320 chr2B 89703320 G G A A 4 synonymous_variant LOW transcript unique_Triplet 89702400 89709312 6913 3 0.0433964993490525 RFvsST 10057 695693088 695683032 no 749.03366809529 TraesCS2B01G123100 chr2B_90472440 chr2B 90472440 C C T T 4 synonymous_variant LOW transcript unique_Triplet 90472231 90474042 1812 1 0.0551876379690949 RFvsST 10057 695693088 695683032 no 11.2782541794596 TraesCS2B01G123500 chr2B_91044071 chr2B 91044071 T T A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 91038383 91044600 6218 2 0.0321646831778707 RFvsST 10057 695693088 695683032 no 33.2276953274453 TraesCS2B01G123500 chr2B_91039324 chr2B 91039324 G G A A 4 missense_variant MODERATE transcript non_Triplet 91038383 91044600 6218 2 0.0321646831778707 RFvsST 10057 695693088 695683032 no 33.2276953274453 TraesCS2B01G125800 chr2B_94034280 chr2B 94034280 C T C T 3 synonymous_variant LOW transcript non_Triplet 94033204 94034351 1148 4 0.348432055749129 RFvsST 10057 695693088 695683032 no 172.002376786735 TraesCS2B01G125800 chr2B_94033120 chr2B 94033120 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 94033204 94034351 1148 4 0.348432055749129 RFvsST 10057 695693088 695683032 no 172.002376786735 TraesCS2B01G125800 chr2B_94033874 chr2B 94033874 G C G C 3 missense_variant MODERATE transcript non_Triplet 94033204 94034351 1148 4 0.348432055749129 RFvsST 10057 695693088 695683032 no 172.002376786735 TraesCS2B01G125800 chr2B_94033499 chr2B 94033499 C A C A 3 missense_variant MODERATE transcript non_Triplet 94033204 94034351 1148 4 0.348432055749129 RFvsST 10057 695693088 695683032 no 172.002376786735 TraesCS2B01G126200 chr2B_94223974 chr2B 94223974 C C T T 4 missense_variant MODERATE transcript non_Triplet 94223834 94224982 1149 2 0.174064403829417 RFvsST 10057 695693088 695683032 no 162.925211726829 TraesCS2B01G126200 chr2B_94224203 chr2B 94224203 A A G G 4 synonymous_variant LOW transcript non_Triplet 94223834 94224982 1149 2 0.174064403829417 RFvsST 10057 695693088 695683032 no 162.925211726829 TraesCS2B01G126500 chr2B_94925581 chr2B 94925581 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 94925534 94927859 2326 2 0.0859845227858985 RFvsST 10057 695693088 695683032 no 205.645784309871 TraesCS2B01G126500 chr2B_94926895 chr2B 94926895 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 94925534 94927859 2326 2 0.0859845227858985 RFvsST 10057 695693088 695683032 no 205.645784309871 TraesCS2B01G126600 chr2B_94927999 chr2B 94927999 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 94928534 94932821 4288 1 0.0233208955223881 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G127500 chr2B_95542162 chr2B 95542162 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 95542490 95544971 2482 4 0.16116035455278 RFvsST 10057 695693088 695683032 no 113.741999286579 TraesCS2B01G127500 chr2B_95543128 chr2B 95543128 C C T T 4 synonymous_variant LOW transcript unique_Triplet 95542490 95544971 2482 4 0.16116035455278 RFvsST 10057 695693088 695683032 no 113.741999286579 TraesCS2B01G127500 chr2B_95544936 chr2B 95544936 G G A A 4 synonymous_variant LOW transcript unique_Triplet 95542490 95544971 2482 4 0.16116035455278 RFvsST 10057 695693088 695683032 no 113.741999286579 TraesCS2B01G127500 chr2B_95543665 chr2B 95543665 C C T T 4 synonymous_variant LOW transcript unique_Triplet 95542490 95544971 2482 4 0.16116035455278 RFvsST 10057 695693088 695683032 no 113.741999286579 TraesCS2B01G127700 chr2B_95761959 chr2B 95761959 G G A A 4 missense_variant MODERATE transcript unique_Triplet 95761858 95768987 7130 1 0.0140252454417952 RFvsST 10057 695693088 695683032 no 116.800034140191 TraesCS2B01G127800 chr2B_95797333 chr2B 95797333 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 95796218 95796941 724 2 0.276243093922652 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G127800 chr2B_95797357 chr2B 95797357 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 95796218 95796941 724 2 0.276243093922652 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G128400 chr2B_96085863 chr2B 96085863 G G T T 4 missense_variant MODERATE transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96085624 chr2B 96085624 G G T T 4 synonymous_variant LOW transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96085770 chr2B 96085770 T T C C 4 missense_variant MODERATE transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96085592 chr2B 96085592 A A G G 4 missense_variant MODERATE transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96084679 chr2B 96084679 A A G G 4 synonymous_variant LOW transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96088943 chr2B 96088943 C C G G 4 missense_variant MODERATE transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96085829 chr2B 96085829 C C T T 4 synonymous_variant LOW transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96088749 chr2B 96088749 G G C C 4 synonymous_variant LOW transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96084999 chr2B 96084999 C C T T 4 missense_variant MODERATE transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G128400 chr2B_96085123 chr2B 96085123 T T C C 4 synonymous_variant LOW transcript non_Triplet 96084601 96090792 6192 10 0.161498708010336 RFvsST 10057 695693088 695683032 no 209.336480213597 TraesCS2B01G129600 chr2B_97190771 chr2B 97190771 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 97190472 97194976 4505 1 0.0221975582685905 RFvsST 10057 695693088 695683032 no 51.9454996533287 TraesCS2B01G129700 chr2B_97343745 chr2B 97343745 A A G G 4 synonymous_variant LOW transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97342688 chr2B 97342688 C C T T 4 synonymous_variant LOW transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97342627 chr2B 97342627 T T C C 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97343739 chr2B 97343739 G G A A 4 synonymous_variant LOW transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97342410 chr2B 97342410 G G A A 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97342838 chr2B 97342838 G G A A 4 synonymous_variant LOW transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97343912 chr2B 97343912 A A G G 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97339236 chr2B 97339236 C C T T 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97342671 chr2B 97342671 G G A A 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129700 chr2B_97343058 chr2B 97343058 C C T T 4 missense_variant MODERATE transcript non_Triplet 97339106 97343981 4876 10 0.205086136177194 RFvsST 10057 695693088 695683032 no 405.494725760459 TraesCS2B01G129800 chr2B_97386809 chr2B 97386809 A A G G 4 synonymous_variant LOW transcript unique_Triplet 97372865 97390283 17419 4 0.022963430736552 RFvsST 10057 695693088 695683032 no 35.8227562089595 TraesCS2B01G129800 chr2B_97386848 chr2B 97386848 A A G G 4 synonymous_variant LOW transcript unique_Triplet 97372865 97390283 17419 4 0.022963430736552 RFvsST 10057 695693088 695683032 no 35.8227562089595 TraesCS2B01G129800 chr2B_97394426 chr2B 97394426 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 97372865 97390283 17419 4 0.022963430736552 RFvsST 10057 695693088 695683032 no 35.8227562089595 TraesCS2B01G129800 chr2B_97394385 chr2B 97394385 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 97372865 97390283 17419 4 0.022963430736552 RFvsST 10057 695693088 695683032 no 35.8227562089595 TraesCS2B01G130000 chr2B_97394550 chr2B 97394550 A A T T 4 synonymous_variant LOW transcript unique_Triplet 97394475 97397147 2673 1 0.0374111485222596 RFvsST 10057 695693088 695683032 no 23.2780294997993 TraesCS2B01G130200 chr2B_97436554 chr2B 97436554 T T C C 4 synonymous_variant LOW transcript unique_Triplet 97436350 97437483 1134 2 0.17636684303351 RFvsST 10057 695693088 695683032 no 70.2031153599854 TraesCS2B01G130200 chr2B_97436092 chr2B 97436092 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 97436350 97437483 1134 2 0.17636684303351 RFvsST 10057 695693088 695683032 no 70.2031153599854 TraesCS2B01G130500 chr2B_97932337 chr2B 97932337 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 97933152 97933921 770 2 0.25974025974026 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G130500 chr2B_97932359 chr2B 97932359 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 97933152 97933921 770 2 0.25974025974026 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G130900 chr2B_97952872 chr2B 97952872 A A G G 4 synonymous_variant LOW transcript unique_Triplet 97952674 97956886 4213 2 0.0474721101352955 RFvsST 10057 695693088 695683032 no 300.965802160641 TraesCS2B01G130900 chr2B_97952779 chr2B 97952779 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 97952674 97956886 4213 2 0.0474721101352955 RFvsST 10057 695693088 695683032 no 300.965802160641 TraesCS2B01G131400 chr2B_98286936 chr2B 98286936 A A G G 4 missense_variant MODERATE transcript unique_Triplet 98285996 98286964 969 1 0.103199174406605 RFvsST 10057 695693088 695683032 no 221.853076042256 TraesCS2B01G131500 chr2B_98295566 chr2B 98295566 A A T T 4 synonymous_variant LOW transcript unique_Triplet 98294487 98299531 5045 2 0.0396432111000991 RFvsST 10057 695693088 695683032 no 49.7643428489881 TraesCS2B01G131500 chr2B_98298288 chr2B 98298288 C C T T 4 synonymous_variant LOW transcript unique_Triplet 98294487 98299531 5045 2 0.0396432111000991 RFvsST 10057 695693088 695683032 no 49.7643428489881 TraesCS2B01G131800 chr2B_98363741 chr2B 98363741 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98356351 98360545 4195 1 0.0238379022646007 RFvsST 10057 695693088 695683032 no 8.57565825803393 TraesCS2B01G131900 chr2B_98360670 chr2B 98360670 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 98361637 98363657 2021 1 0.049480455220188 RFvsST 10057 695693088 695683032 no 25.10972958296 TraesCS2B01G132000 chr2B_98365757 chr2B 98365757 A A C C 4 synonymous_variant LOW transcript unique_Triplet 98364641 98366911 2271 1 0.0440334654337296 RFvsST 10057 695693088 695683032 no 26.3288915847702 TraesCS2B01G132900 chr2B_99277068 chr2B 99277068 G G C C 4 missense_variant MODERATE transcript unique_Triplet 99267810 99279614 11805 1 0.00847098686997035 RFvsST 10057 695693088 695683032 no 96.2218261413051 TraesCS2B01G133200 chr2B_99756797 chr2B 99756797 G G A A 4 missense_variant MODERATE transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99759678 chr2B 99759678 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99758134 chr2B 99758134 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99757126 chr2B 99757126 C C A A 4 synonymous_variant LOW transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99756295 chr2B 99756295 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99757042 chr2B 99757042 C C T T 4 synonymous_variant LOW transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133200 chr2B_99757686 chr2B 99757686 T T C C 4 missense_variant MODERATE transcript unique_Triplet 99756397 99758046 1650 7 0.424242424242424 RFvsST 10057 695693088 695683032 no 440.918489239661 TraesCS2B01G133300 chr2B_99766371 chr2B 99766371 A A G G 4 synonymous_variant LOW transcript unique_Triplet 99759738 99767538 7801 3 0.0384566081271632 RFvsST 10057 695693088 695683032 no 7.82288372175649 TraesCS2B01G133300 chr2B_99766383 chr2B 99766383 T T C C 4 synonymous_variant LOW transcript unique_Triplet 99759738 99767538 7801 3 0.0384566081271632 RFvsST 10057 695693088 695683032 no 7.82288372175649 TraesCS2B01G133300 chr2B_99760393 chr2B 99760393 C C T T 4 synonymous_variant LOW transcript unique_Triplet 99759738 99767538 7801 3 0.0384566081271632 RFvsST 10057 695693088 695683032 no 7.82288372175649 TraesCS2B01G133400 chr2B_99953969 chr2B 99953969 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 99952065 99952631 567 1 0.17636684303351 RFvsST 10057 695693088 695683032 no 14.243939196522 TraesCS2B01G133500 chr2B_99960256 chr2B 99960256 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99960249 chr2B 99960249 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99960206 chr2B 99960206 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99961224 chr2B 99961224 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99960838 chr2B 99960838 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99960801 chr2B 99960801 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133500 chr2B_99960199 chr2B 99960199 T T G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 99960196 99961050 855 7 0.818713450292398 RFvsST 10057 695693088 695683032 no 10431.003775354 TraesCS2B01G133600 chr2B_100029855 chr2B 100029855 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 100024749 100025054 306 1 0.326797385620915 RFvsST 10057 695693088 695683032 no 5.56855854044414 TraesCS2B01G133700 chr2B_100029944 chr2B 100029944 T T C C 4 missense_variant MODERATE transcript non_Triplet 100029874 100030179 306 2 0.65359477124183 RFvsST 10057 695693088 695683032 no 104.658014887858 TraesCS2B01G133700 chr2B_100029932 chr2B 100029932 G G A A 4 missense_variant MODERATE transcript non_Triplet 100029874 100030179 306 2 0.65359477124183 RFvsST 10057 695693088 695683032 no 104.658014887858 TraesCS2B01G134000 chr2B_100088851 chr2B 100088851 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100095144 chr2B 100095144 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100088906 chr2B 100088906 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100089105 chr2B 100089105 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100095688 chr2B 100095688 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100089049 chr2B 100089049 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100095250 chr2B 100095250 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G134000 chr2B_100088754 chr2B 100088754 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 100090280 100092709 2430 8 0.329218106995885 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G135100 chr2B_101488993 chr2B 101488993 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 101486721 101489748 3028 4 0.132100396301189 RFvsST 10057 695693088 695683032 no 240.453367351144 TraesCS2B01G135100 chr2B_101487366 chr2B 101487366 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 101486721 101489748 3028 4 0.132100396301189 RFvsST 10057 695693088 695683032 no 240.453367351144 TraesCS2B01G135100 chr2B_101487490 chr2B 101487490 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 101486721 101489748 3028 4 0.132100396301189 RFvsST 10057 695693088 695683032 no 240.453367351144 TraesCS2B01G135100 chr2B_101487193 chr2B 101487193 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 101486721 101489748 3028 4 0.132100396301189 RFvsST 10057 695693088 695683032 no 240.453367351144 TraesCS2B01G135700 chr2B_102418325 chr2B 102418325 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 102414810 102417068 2259 1 0.0442673749446658 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G135800 chr2B_102419890 chr2B 102419890 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135800 chr2B_102422269 chr2B 102422269 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135800 chr2B_102418683 chr2B 102418683 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135800 chr2B_102424867 chr2B 102424867 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135800 chr2B_102422384 chr2B 102422384 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135800 chr2B_102424322 chr2B 102424322 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 102418549 102426813 8265 6 0.0725952813067151 RFvsST 10057 695693088 695683032 no 948.997197370214 TraesCS2B01G135900 chr2B_102977102 chr2B 102977102 T T C C 4 synonymous_variant LOW transcript unique_Triplet 102971946 102977648 5703 2 0.0350692617920393 RFvsST 10057 695693088 695683032 no 842.7084751189 TraesCS2B01G135900 chr2B_102977549 chr2B 102977549 T T C C 4 synonymous_variant LOW transcript unique_Triplet 102971946 102977648 5703 2 0.0350692617920393 RFvsST 10057 695693088 695683032 no 842.7084751189 TraesCS2B01G136000 chr2B_102982806 chr2B 102982806 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 102980300 102982645 2346 2 0.0852514919011083 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G136000 chr2B_102982713 chr2B 102982713 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 102980300 102982645 2346 2 0.0852514919011083 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G137100 chr2B_104063791 chr2B 104063791 T T C C 4 synonymous_variant LOW transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104066545 chr2B 104066545 G A G A 3 synonymous_variant LOW transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104066380 chr2B 104066380 G A G A 3 synonymous_variant LOW transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104062890 chr2B 104062890 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104066723 chr2B 104066723 T G T G 3 missense_variant MODERATE transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104062957 chr2B 104062957 T T C C 4 missense_variant MODERATE transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104062989 chr2B 104062989 T T C C 4 missense_variant MODERATE transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104065771 chr2B 104065771 C C T T 4 synonymous_variant LOW transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137100 chr2B_104063845 chr2B 104063845 A A G G 4 synonymous_variant LOW transcript unique_Triplet 104062415 104067144 4730 9 0.190274841437632 RFvsST 10057 695693088 695683032 no 112.08261575069 TraesCS2B01G137300 chr2B_104235208 chr2B 104235208 G G A A 4 missense_variant MODERATE transcript unique_Triplet 104233460 104237268 3809 3 0.0787608296140719 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G137300 chr2B_104237413 chr2B 104237413 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 104233460 104237268 3809 3 0.0787608296140719 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G137300 chr2B_104234904 chr2B 104234904 G C G C 3 missense_variant MODERATE transcript unique_Triplet 104233460 104237268 3809 3 0.0787608296140719 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G137700 chr2B_104581712 chr2B 104581712 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 104580530 104581647 1118 1 0.0894454382826476 RFvsST 10057 695693088 695683032 no 5026.58350420245 TraesCS2B01G137800 chr2B_104816691 chr2B 104816691 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 104813144 104816802 3659 2 0.0546597430992074 RFvsST 10057 695693088 695683032 no 58.9263115242758 TraesCS2B01G137800 chr2B_104817763 chr2B 104817763 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 104813144 104816802 3659 2 0.0546597430992074 RFvsST 10057 695693088 695683032 no 58.9263115242758 TraesCS2B01G137900 chr2B_104817856 chr2B 104817856 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 104817771 104821247 3477 4 0.115041702617199 RFvsST 10057 695693088 695683032 no 39.9938949843228 TraesCS2B01G137900 chr2B_104817889 chr2B 104817889 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 104817771 104821247 3477 4 0.115041702617199 RFvsST 10057 695693088 695683032 no 39.9938949843228 TraesCS2B01G137900 chr2B_104821495 chr2B 104821495 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 104817771 104821247 3477 4 0.115041702617199 RFvsST 10057 695693088 695683032 no 39.9938949843228 TraesCS2B01G137900 chr2B_104819870 chr2B 104819870 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 104817771 104821247 3477 4 0.115041702617199 RFvsST 10057 695693088 695683032 no 39.9938949843228 TraesCS2B01G138200 chr2B_105411861 chr2B 105411861 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 105411922 105415065 3144 4 0.127226463104326 RFvsST 10057 695693088 695683032 no 217.265212641211 TraesCS2B01G138200 chr2B_105413486 chr2B 105413486 A A G G 4 missense_variant MODERATE transcript non_Triplet 105411922 105415065 3144 4 0.127226463104326 RFvsST 10057 695693088 695683032 no 217.265212641211 TraesCS2B01G138200 chr2B_105413154 chr2B 105413154 C C T T 4 synonymous_variant LOW transcript non_Triplet 105411922 105415065 3144 4 0.127226463104326 RFvsST 10057 695693088 695683032 no 217.265212641211 TraesCS2B01G138200 chr2B_105412667 chr2B 105412667 C C T T 4 missense_variant MODERATE transcript non_Triplet 105411922 105415065 3144 4 0.127226463104326 RFvsST 10057 695693088 695683032 no 217.265212641211 TraesCS2B01G139000 chr2B_105913020 chr2B 105913020 G A G A 3 synonymous_variant LOW transcript unique_Triplet 105909247 105913990 4744 1 0.021079258010118 RFvsST 10057 695693088 695683032 no 82.3364401851711 TraesCS2B01G140300 chr2B_106956167 chr2B 106956167 A C A C 3 missense_variant MODERATE transcript unique_Triplet 106954487 106956522 2036 1 0.0491159135559921 RFvsST 10057 695693088 695683032 no 129.225839786108 TraesCS2B01G142000 chr2B_108795630 chr2B 108795630 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 108795307 108797805 2499 4 0.160064025610244 RFvsST 10057 695693088 695683032 no 820.74038214927 TraesCS2B01G142000 chr2B_108795966 chr2B 108795966 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 108795307 108797805 2499 4 0.160064025610244 RFvsST 10057 695693088 695683032 no 820.74038214927 TraesCS2B01G142000 chr2B_108797548 chr2B 108797548 G T G T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 108795307 108797805 2499 4 0.160064025610244 RFvsST 10057 695693088 695683032 no 820.74038214927 TraesCS2B01G142000 chr2B_108797745 chr2B 108797745 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 108795307 108797805 2499 4 0.160064025610244 RFvsST 10057 695693088 695683032 no 820.74038214927 TraesCS2B01G144100 chr2B_110410420 chr2B 110410420 C A G A,G 6 synonymous_variant LOW transcript unique_Triplet 110408811 110412861 4051 2 0.0493705257960997 RFvsST 10057 695693088 695683032 no 678.882651244018 TraesCS2B01G144100 chr2B_110412757 chr2B 110412757 T C G C,G 6 missense_variant MODERATE transcript unique_Triplet 110408811 110412861 4051 2 0.0493705257960997 RFvsST 10057 695693088 695683032 no 678.882651244018 TraesCS2B01G144200 chr2B_110416832 chr2B 110416832 C T C T 3 missense_variant MODERATE transcript non_Triplet 110416521 110417583 1063 1 0.0940733772342427 RFvsST 10057 695693088 695683032 no 143.174005008094 TraesCS2B01G149000 chr2B_115381191 chr2B 115381191 A G A G 3 missense_variant MODERATE transcript unique_Triplet 115380620 115385304 4685 2 0.0426894343649947 RFvsST 10057 695693088 695683032 no 364.894858799712 TraesCS2B01G149000 chr2B_115384232 chr2B 115384232 T C T C 3 synonymous_variant LOW transcript unique_Triplet 115380620 115385304 4685 2 0.0426894343649947 RFvsST 10057 695693088 695683032 no 364.894858799712 TraesCS2B01G149100 chr2B_115839643 chr2B 115839643 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 115835307 115839393 4087 2 0.0489356496207487 RFvsST 10057 695693088 695683032 no 11.2109286456443 TraesCS2B01G149100 chr2B_115839440 chr2B 115839440 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 115835307 115839393 4087 2 0.0489356496207487 RFvsST 10057 695693088 695683032 no 11.2109286456443 TraesCS2B01G149500 chr2B_115968566 chr2B 115968566 G A G A 3 missense_variant MODERATE transcript unique_Triplet 115968486 115971409 2924 3 0.102599179206566 RFvsST 10057 695693088 695683032 no 37.9073025589841 TraesCS2B01G149500 chr2B_115968796 chr2B 115968796 G C G C 3 synonymous_variant LOW transcript unique_Triplet 115968486 115971409 2924 3 0.102599179206566 RFvsST 10057 695693088 695683032 no 37.9073025589841 TraesCS2B01G149500 chr2B_115968479 chr2B 115968479 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 115968486 115971409 2924 3 0.102599179206566 RFvsST 10057 695693088 695683032 no 37.9073025589841 TraesCS2B01G150200 chr2B_116468960 chr2B 116468960 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 116469101 116473094 3994 2 0.0500751126690035 RFvsST 10057 695693088 695683032 no 37.2666404951347 TraesCS2B01G150200 chr2B_116469022 chr2B 116469022 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 116469101 116473094 3994 2 0.0500751126690035 RFvsST 10057 695693088 695683032 no 37.2666404951347 TraesCS2B01G150400 chr2B_117117267 chr2B 117117267 C A C A 3 missense_variant MODERATE transcript unique_Triplet 117107641 117118389 10749 2 0.0186063819890222 RFvsST 10057 695693088 695683032 no 44.4506544200793 TraesCS2B01G150400 chr2B_117117973 chr2B 117117973 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 117107641 117118389 10749 2 0.0186063819890222 RFvsST 10057 695693088 695683032 no 44.4506544200793 TraesCS2B01G150500 chr2B_117621087 chr2B 117621087 G A G A 3 synonymous_variant LOW transcript unique_Triplet 117606016 117621135 15120 5 0.0330687830687831 RFvsST 10057 695693088 695683032 no 395.077918694834 TraesCS2B01G150500 chr2B_117608944 chr2B 117608944 A G A G 3 missense_variant MODERATE transcript unique_Triplet 117606016 117621135 15120 5 0.0330687830687831 RFvsST 10057 695693088 695683032 no 395.077918694834 TraesCS2B01G150500 chr2B_117618444 chr2B 117618444 G A G A 3 synonymous_variant LOW transcript unique_Triplet 117606016 117621135 15120 5 0.0330687830687831 RFvsST 10057 695693088 695683032 no 395.077918694834 TraesCS2B01G150500 chr2B_117618802 chr2B 117618802 T G T G 3 synonymous_variant LOW transcript unique_Triplet 117606016 117621135 15120 5 0.0330687830687831 RFvsST 10057 695693088 695683032 no 395.077918694834 TraesCS2B01G150500 chr2B_117609457 chr2B 117609457 C T C T 3 synonymous_variant LOW transcript unique_Triplet 117606016 117621135 15120 5 0.0330687830687831 RFvsST 10057 695693088 695683032 no 395.077918694834 TraesCS2B01G150800 chr2B_117885030 chr2B 117885030 C T C T 3 missense_variant MODERATE transcript unique_Triplet 117884728 117890136 5409 2 0.0369754113514513 RFvsST 10057 695693088 695683032 no 36.8715151854749 TraesCS2B01G150800 chr2B_117889955 chr2B 117889955 A T A T 3 missense_variant MODERATE transcript unique_Triplet 117884728 117890136 5409 2 0.0369754113514513 RFvsST 10057 695693088 695683032 no 36.8715151854749 TraesCS2B01G150900 chr2B_117932602 chr2B 117932602 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117931642 chr2B 117931642 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117932476 chr2B 117932476 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117932538 chr2B 117932538 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117932536 chr2B 117932536 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117931683 chr2B 117931683 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117931810 chr2B 117931810 G A G A 3 synonymous_variant LOW transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117932477 chr2B 117932477 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G150900 chr2B_117931600 chr2B 117931600 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 117931694 117932314 621 9 1.44927536231884 RFvsST 10057 695693088 695683032 no 93.709167357256 TraesCS2B01G153800 chr2B_121678467 chr2B 121678467 G G A A 4 missense_variant MODERATE transcript unique_Triplet 121676875 121687761 10887 1 0.00918526683200147 RFvsST 10057 695693088 695683032 no 89.1459090911917 TraesCS2B01G154200 chr2B_122267555 chr2B 122267555 T T C C 4 synonymous_variant LOW transcript non_Triplet 122265145 122267947 2803 2 0.0713521227256511 RFvsST 10057 695693088 695683032 no 365.15098388502 TraesCS2B01G154200 chr2B_122265502 chr2B 122265502 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 122265145 122267947 2803 2 0.0713521227256511 RFvsST 10057 695693088 695683032 no 365.15098388502 TraesCS2B01G154500 chr2B_122714331 chr2B 122714331 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 122710225 122714534 4310 1 0.0232018561484919 RFvsST 10057 695693088 695683032 no 306.617343686909 TraesCS2B01G155100 chr2B_123062546 chr2B 123062546 G G A A 4 synonymous_variant LOW transcript unique_Triplet 123062408 123064199 1792 1 0.0558035714285714 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G155200 chr2B_123101446 chr2B 123101446 G G C C 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100612 chr2B 123100612 C C G G 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100504 chr2B 123100504 C C A A 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100675 chr2B 123100675 T T G G 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100462 chr2B 123100462 T T C C 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100869 chr2B 123100869 G G C C 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100594 chr2B 123100594 C C G G 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100467 chr2B 123100467 G G T T 4 synonymous_variant LOW transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123100597 chr2B 123100597 G G C C 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123101224 chr2B 123101224 C C G G 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G155200 chr2B_123101447 chr2B 123101447 T T C C 4 missense_variant MODERATE transcript non_Triplet 123100351 123101922 1572 11 0.699745547073791 RFvsST 10057 695693088 695683032 no 167.708026712841 TraesCS2B01G156400 chr2B_129662554 chr2B 129662554 T T C C 4 synonymous_variant LOW transcript non_Triplet 129654535 129663861 9327 2 0.0214431221185805 RFvsST 10057 695693088 695683032 no 551.226774086418 TraesCS2B01G156400 chr2B_129657132 chr2B 129657132 C C T T 4 synonymous_variant LOW transcript non_Triplet 129654535 129663861 9327 2 0.0214431221185805 RFvsST 10057 695693088 695683032 no 551.226774086418 TraesCS2B01G157100 chr2B_131287139 chr2B 131287139 G G C C 4 missense_variant MODERATE transcript unique_Triplet 131286109 131290287 4179 1 0.0239291696578129 RFvsST 10057 695693088 695683032 no 448.003601275238 TraesCS2B01G157200 chr2B_131292009 chr2B 131292009 G G A A 4 synonymous_variant LOW transcript unique_Triplet 131291519 131294022 2504 2 0.0798722044728434 RFvsST 10057 695693088 695683032 no 50.9106765963529 TraesCS2B01G157200 chr2B_131292734 chr2B 131292734 C C T T 4 synonymous_variant LOW transcript unique_Triplet 131291519 131294022 2504 2 0.0798722044728434 RFvsST 10057 695693088 695683032 no 50.9106765963529 TraesCS2B01G157300 chr2B_131308824 chr2B 131308824 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 131306611 131306881 271 1 0.3690036900369 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G157500 chr2B_131310132 chr2B 131310132 G G C C 4 missense_variant MODERATE transcript unique_Triplet 131309047 131310313 1267 1 0.0789265982636148 RFvsST 10057 695693088 695683032 no 2285.79166358768 TraesCS2B01G157600 chr2B_131568557 chr2B 131568557 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 131568757 131573881 5125 1 0.0195121951219512 RFvsST 10057 695693088 695683032 no 39205.9113401008 TraesCS2B01G158300 chr2B_132282955 chr2B 132282955 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 132277795 132280398 2604 1 0.0384024577572965 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G158500 chr2B_132345901 chr2B 132345901 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 132340500 132346035 5536 1 0.0180635838150289 RFvsST 10057 695693088 695683032 no 133.224727876413 TraesCS2B01G160700 chr2B_134090055 chr2B 134090055 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 134089995 134094837 4843 1 0.0206483584555028 RFvsST 10057 695693088 695683032 no 394.867198511739 TraesCS2B01G162000 chr2B_134998582 chr2B 134998582 G T G T 3 missense_variant MODERATE transcript unique_Triplet 134998561 135003538 4978 1 0.0200883889112093 RFvsST 10057 695693088 695683032 no 41.948338929022 TraesCS2B01G162100 chr2B_135003859 chr2B 135003859 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 135004402 135007635 3234 1 0.0309214594928881 RFvsST 10057 695693088 695683032 no 15.2038002967983 TraesCS2B01G162200 chr2B_135007973 chr2B 135007973 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 135007880 135009533 1654 1 0.060459492140266 RFvsST 10057 695693088 695683032 no 301.762658639575 TraesCS2B01G163300 chr2B_135691727 chr2B 135691727 C A C A 3 missense_variant MODERATE transcript unique_Triplet 135691692 135697878 6187 5 0.0808146112817197 RFvsST 10057 695693088 695683032 no 203.929462762706 TraesCS2B01G163300 chr2B_135692057 chr2B 135692057 C C A A 4 missense_variant MODERATE transcript unique_Triplet 135691692 135697878 6187 5 0.0808146112817197 RFvsST 10057 695693088 695683032 no 203.929462762706 TraesCS2B01G163300 chr2B_135691699 chr2B 135691699 A A G G 4 missense_variant MODERATE transcript unique_Triplet 135691692 135697878 6187 5 0.0808146112817197 RFvsST 10057 695693088 695683032 no 203.929462762706 TraesCS2B01G163300 chr2B_135697801 chr2B 135697801 C T C T 3 synonymous_variant LOW transcript unique_Triplet 135691692 135697878 6187 5 0.0808146112817197 RFvsST 10057 695693088 695683032 no 203.929462762706 TraesCS2B01G163300 chr2B_135692414 chr2B 135692414 C T C T 3 missense_variant MODERATE transcript unique_Triplet 135691692 135697878 6187 5 0.0808146112817197 RFvsST 10057 695693088 695683032 no 203.929462762706 TraesCS2B01G164100 chr2B_136179243 chr2B 136179243 T T G G 4 missense_variant MODERATE transcript unique_Triplet 136175537 136181485 5949 2 0.0336190956463271 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G164100 chr2B_136180749 chr2B 136180749 A A G G 4 synonymous_variant LOW transcript unique_Triplet 136175537 136181485 5949 2 0.0336190956463271 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G164200 chr2B_136430768 chr2B 136430768 G A G A 3 synonymous_variant LOW transcript unique_Triplet 136429596 136430945 1350 1 0.0740740740740741 RFvsST 10057 695693088 695683032 no 493.008465672523 TraesCS2B01G166100 chr2B_138967376 chr2B 138967376 T T C C 4 synonymous_variant LOW transcript unique_Triplet 138963901 138968221 4321 1 0.0231427910205971 RFvsST 10057 695693088 695683032 no 133.05006287697 TraesCS2B01G166300 chr2B_139068582 chr2B 139068582 G G A A 4 missense_variant MODERATE transcript unique_Triplet 139068338 139079836 11499 1 0.00869640838333768 RFvsST 10057 695693088 695683032 no 148.64211162134 TraesCS2B01G167000 chr2B_139802889 chr2B 139802889 T C T C 3 missense_variant MODERATE transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139814683 chr2B 139814683 G C G C 3 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139800512 chr2B 139800512 T T A A 4 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139814694 chr2B 139814694 G C G C 3 missense_variant MODERATE transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139812953 chr2B 139812953 C A C A 3 missense_variant MODERATE transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139797075 chr2B 139797075 C T C T 3 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139800584 chr2B 139800584 C T C T 3 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139812784 chr2B 139812784 A G A G 3 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139816393 chr2B 139816393 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167000 chr2B_139801178 chr2B 139801178 T C T C 3 synonymous_variant LOW transcript unique_Triplet 139793626 139816285 22660 10 0.0441306266548985 RFvsST 10057 695693088 695683032 no 1255.78027112831 TraesCS2B01G167500 chr2B_140751959 chr2B 140751959 A A G G 4 missense_variant MODERATE transcript unique_Triplet 140750519 140756635 6117 2 0.0326957658983162 RFvsST 10057 695693088 695683032 no 81.6597219614293 TraesCS2B01G167500 chr2B_140751038 chr2B 140751038 C C T T 4 missense_variant MODERATE transcript unique_Triplet 140750519 140756635 6117 2 0.0326957658983162 RFvsST 10057 695693088 695683032 no 81.6597219614293 TraesCS2B01G167600 chr2B_140772833 chr2B 140772833 A A G G 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140772758 chr2B 140772758 C C T T 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140772638 chr2B 140772638 A A G G 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140764314 chr2B 140764314 C C T T 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140767107 chr2B 140767107 T T C C 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140763664 chr2B 140763664 G G T T 4 missense_variant MODERATE transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140772725 chr2B 140772725 C T C T 3 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140772934 chr2B 140772934 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140772622 chr2B 140772622 G G C C 4 missense_variant MODERATE transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167600 chr2B_140767098 chr2B 140767098 C C T T 4 synonymous_variant LOW transcript unique_Triplet 140763452 140773200 9749 10 0.10257462303826 RFvsST 10057 695693088 695683032 no 168.343700408332 TraesCS2B01G167800 chr2B_140786085 chr2B 140786085 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 140785911 140788521 2611 1 0.0382995021064726 RFvsST 10057 695693088 695683032 no 118.294871862531 TraesCS2B01G167900 chr2B_140846068 chr2B 140846068 T T C C 4 synonymous_variant LOW transcript unique_Triplet 140843989 140847191 3203 3 0.0936621916952857 RFvsST 10057 695693088 695683032 no 333.642573189159 TraesCS2B01G167900 chr2B_140847129 chr2B 140847129 G G T T 4 missense_variant MODERATE transcript unique_Triplet 140843989 140847191 3203 3 0.0936621916952857 RFvsST 10057 695693088 695683032 no 333.642573189159 TraesCS2B01G167900 chr2B_140844179 chr2B 140844179 C C A A 4 missense_variant MODERATE transcript unique_Triplet 140843989 140847191 3203 3 0.0936621916952857 RFvsST 10057 695693088 695683032 no 333.642573189159 TraesCS2B01G168000 chr2B_140850607 chr2B 140850607 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 140847510 140850732 3223 1 0.0310269934843314 RFvsST 10057 695693088 695683032 no 90.6659357829642 TraesCS2B01G168300 chr2B_141148060 chr2B 141148060 A A T T 4 missense_variant MODERATE transcript non_Triplet 141147392 141148435 1044 2 0.191570881226054 RFvsST 10057 695693088 695683032 no 226.625360974107 TraesCS2B01G168300 chr2B_141147742 chr2B 141147742 A A C C 4 synonymous_variant LOW transcript non_Triplet 141147392 141148435 1044 2 0.191570881226054 RFvsST 10057 695693088 695683032 no 226.625360974107 TraesCS2B01G169200 chr2B_141989050 chr2B 141989050 G G A A 4 missense_variant MODERATE transcript unique_Triplet 141986139 141989354 3216 1 0.0310945273631841 RFvsST 10057 695693088 695683032 no 431.515882480082 TraesCS2B01G169300 chr2B_142242973 chr2B 142242973 G G A A 4 synonymous_variant LOW transcript unique_Triplet 142239046 142245398 6353 1 0.0157405949944908 RFvsST 10057 695693088 695683032 no 66.0928914818752 TraesCS2B01G169700 chr2B_142865054 chr2B 142865054 A A C C 4 missense_variant MODERATE transcript unique_Triplet 142863492 142865941 2450 1 0.0408163265306122 RFvsST 10057 695693088 695683032 no 164.44384361782 TraesCS2B01G171600 chr2B_144650204 chr2B 144650204 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 144650256 144654866 4611 3 0.0650618087182824 RFvsST 10057 695693088 695683032 no 268.952203096634 TraesCS2B01G171600 chr2B_144654636 chr2B 144654636 G A G A 3 synonymous_variant LOW transcript unique_Triplet 144650256 144654866 4611 3 0.0650618087182824 RFvsST 10057 695693088 695683032 no 268.952203096634 TraesCS2B01G171600 chr2B_144650099 chr2B 144650099 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 144650256 144654866 4611 3 0.0650618087182824 RFvsST 10057 695693088 695683032 no 268.952203096634 TraesCS2B01G172100 chr2B_146638860 chr2B 146638860 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 146634611 146638883 4273 5 0.1170138076293 RFvsST 10057 695693088 695683032 no 498.54730619031 TraesCS2B01G172100 chr2B_146634698 chr2B 146634698 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 146634611 146638883 4273 5 0.1170138076293 RFvsST 10057 695693088 695683032 no 498.54730619031 TraesCS2B01G172100 chr2B_146634773 chr2B 146634773 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 146634611 146638883 4273 5 0.1170138076293 RFvsST 10057 695693088 695683032 no 498.54730619031 TraesCS2B01G172100 chr2B_146638741 chr2B 146638741 G A G A 3 synonymous_variant LOW transcript unique_Triplet 146634611 146638883 4273 5 0.1170138076293 RFvsST 10057 695693088 695683032 no 498.54730619031 TraesCS2B01G172100 chr2B_146637363 chr2B 146637363 G C G C 3 synonymous_variant LOW transcript unique_Triplet 146634611 146638883 4273 5 0.1170138076293 RFvsST 10057 695693088 695683032 no 498.54730619031 TraesCS2B01G172200 chr2B_146663946 chr2B 146663946 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 146660837 146664040 3204 1 0.031210986267166 RFvsST 10057 695693088 695683032 no 699.723263850998 TraesCS2B01G172700 chr2B_146905062 chr2B 146905062 C C A A 4 missense_variant MODERATE transcript unique_Triplet 146904851 146906600 1750 3 0.171428571428571 RFvsST 10057 695693088 695683032 no 25.0675635897884 TraesCS2B01G172700 chr2B_146905013 chr2B 146905013 C C A A 4 missense_variant MODERATE transcript unique_Triplet 146904851 146906600 1750 3 0.171428571428571 RFvsST 10057 695693088 695683032 no 25.0675635897884 TraesCS2B01G172700 chr2B_146905075 chr2B 146905075 A A C C 4 synonymous_variant LOW transcript unique_Triplet 146904851 146906600 1750 3 0.171428571428571 RFvsST 10057 695693088 695683032 no 25.0675635897884 TraesCS2B01G172800 chr2B_146915458 chr2B 146915458 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 146913259 146915334 2076 1 0.0481695568400771 RFvsST 10057 695693088 695683032 no 139.132997019246 TraesCS2B01G174100 chr2B_148240442 chr2B 148240442 G A G A 3 missense_variant MODERATE transcript unique_Triplet 148237525 148240812 3288 2 0.0608272506082725 RFvsST 10057 695693088 695683032 no 160.286402895629 TraesCS2B01G174100 chr2B_148239846 chr2B 148239846 C T C T 3 synonymous_variant LOW transcript unique_Triplet 148237525 148240812 3288 2 0.0608272506082725 RFvsST 10057 695693088 695683032 no 160.286402895629 TraesCS2B01G174200 chr2B_148402067 chr2B 148402067 T C T C 3 missense_variant MODERATE transcript unique_Triplet 148400928 148404388 3461 2 0.0577867668303958 RFvsST 10057 695693088 695683032 no 28.1961008245002 TraesCS2B01G174200 chr2B_148403221 chr2B 148403221 C A C A 3 missense_variant MODERATE transcript unique_Triplet 148400928 148404388 3461 2 0.0577867668303958 RFvsST 10057 695693088 695683032 no 28.1961008245002 TraesCS2B01G174500 chr2B_148864139 chr2B 148864139 G C G C 3 missense_variant MODERATE transcript non_Triplet 148863890 148866084 2195 2 0.0911161731207289 RFvsST 10057 695693088 695683032 no 125.094522877104 TraesCS2B01G174500 chr2B_148864409 chr2B 148864409 C G C G 3 missense_variant MODERATE transcript non_Triplet 148863890 148866084 2195 2 0.0911161731207289 RFvsST 10057 695693088 695683032 no 125.094522877104 TraesCS2B01G174700 chr2B_149841587 chr2B 149841587 C A C A 3 synonymous_variant LOW transcript unique_Triplet 149835544 149841608 6065 1 0.0164880461665293 RFvsST 10057 695693088 695683032 no 14.4141977775067 TraesCS2B01G174800 chr2B_149842992 chr2B 149842992 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 149842731 149845969 3239 4 0.123494905835134 RFvsST 10057 695693088 695683032 no 84.4484165512746 TraesCS2B01G174800 chr2B_149845935 chr2B 149845935 G T G T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 149842731 149845969 3239 4 0.123494905835134 RFvsST 10057 695693088 695683032 no 84.4484165512746 TraesCS2B01G174800 chr2B_149844441 chr2B 149844441 G A G A 3 missense_variant MODERATE transcript unique_Triplet 149842731 149845969 3239 4 0.123494905835134 RFvsST 10057 695693088 695683032 no 84.4484165512746 TraesCS2B01G174800 chr2B_149843915 chr2B 149843915 C T C T 3 synonymous_variant LOW transcript unique_Triplet 149842731 149845969 3239 4 0.123494905835134 RFvsST 10057 695693088 695683032 no 84.4484165512746 TraesCS2B01G175300 chr2B_150598759 chr2B 150598759 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 150595853 150599894 4042 1 0.024740227610094 RFvsST 10057 695693088 695683032 no 1674.50157396234 TraesCS2B01G175600 chr2B_150708979 chr2B 150708979 C T C T 3 stop_retained_variant LOW transcript unique_Triplet 150708593 150710534 1942 2 0.102986611740474 RFvsST 10057 695693088 695683032 no 11.0902758212267 TraesCS2B01G175600 chr2B_150710507 chr2B 150710507 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 150708593 150710534 1942 2 0.102986611740474 RFvsST 10057 695693088 695683032 no 11.0902758212267 TraesCS2B01G175800 chr2B_150717456 chr2B 150717456 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 150713109 150717410 4302 3 0.0697350069735007 RFvsST 10057 695693088 695683032 no 45.2716357079761 TraesCS2B01G175800 chr2B_150717681 chr2B 150717681 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 150713109 150717410 4302 3 0.0697350069735007 RFvsST 10057 695693088 695683032 no 45.2716357079761 TraesCS2B01G175800 chr2B_150713207 chr2B 150713207 C T C T 3 missense_variant MODERATE transcript unique_Triplet 150713109 150717410 4302 3 0.0697350069735007 RFvsST 10057 695693088 695683032 no 45.2716357079761 TraesCS2B01G176700 chr2B_151644876 chr2B 151644876 A G A G 3 missense_variant MODERATE transcript unique_Triplet 151643652 151659393 15742 1 0.00635243298183204 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G177100 chr2B_152175239 chr2B 152175239 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 152175687 152175965 279 3 1.0752688172043 RFvsST 10057 695693088 695683032 no 6.98223100755997 TraesCS2B01G177100 chr2B_152175141 chr2B 152175141 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 152175687 152175965 279 3 1.0752688172043 RFvsST 10057 695693088 695683032 no 6.98223100755997 TraesCS2B01G177100 chr2B_152175265 chr2B 152175265 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 152175687 152175965 279 3 1.0752688172043 RFvsST 10057 695693088 695683032 no 6.98223100755997 TraesCS2B01G177500 chr2B_152570617 chr2B 152570617 C C T T 4 missense_variant MODERATE transcript non_Triplet 152569091 152570845 1755 4 0.227920227920228 RFvsST 10057 695693088 695683032 no 839.379307967393 TraesCS2B01G177500 chr2B_152569582 chr2B 152569582 T C T C 3 missense_variant MODERATE transcript non_Triplet 152569091 152570845 1755 4 0.227920227920228 RFvsST 10057 695693088 695683032 no 839.379307967393 TraesCS2B01G177500 chr2B_152569080 chr2B 152569080 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 152569091 152570845 1755 4 0.227920227920228 RFvsST 10057 695693088 695683032 no 839.379307967393 TraesCS2B01G177500 chr2B_152569205 chr2B 152569205 A G A G 3 synonymous_variant LOW transcript non_Triplet 152569091 152570845 1755 4 0.227920227920228 RFvsST 10057 695693088 695683032 no 839.379307967393 TraesCS2B01G177900 chr2B_152844222 chr2B 152844222 A G A G 3 synonymous_variant LOW transcript unique_Triplet 152843210 152844722 1513 4 0.264375413086583 RFvsST 10057 695693088 695683032 no 78.6460329252722 TraesCS2B01G177900 chr2B_152843375 chr2B 152843375 G A G A 3 synonymous_variant LOW transcript unique_Triplet 152843210 152844722 1513 4 0.264375413086583 RFvsST 10057 695693088 695683032 no 78.6460329252722 TraesCS2B01G177900 chr2B_152843699 chr2B 152843699 C A C A 3 synonymous_variant LOW transcript unique_Triplet 152843210 152844722 1513 4 0.264375413086583 RFvsST 10057 695693088 695683032 no 78.6460329252722 TraesCS2B01G177900 chr2B_152843715 chr2B 152843715 A C A C 3 missense_variant MODERATE transcript unique_Triplet 152843210 152844722 1513 4 0.264375413086583 RFvsST 10057 695693088 695683032 no 78.6460329252722 TraesCS2B01G178400 chr2B_153587578 chr2B 153587578 G A G A 3 synonymous_variant LOW transcript unique_Triplet 153585725 153588003 2279 4 0.175515577007459 RFvsST 10057 695693088 695683032 no 46.2243888937343 TraesCS2B01G178400 chr2B_153587674 chr2B 153587674 C G C G 3 synonymous_variant LOW transcript unique_Triplet 153585725 153588003 2279 4 0.175515577007459 RFvsST 10057 695693088 695683032 no 46.2243888937343 TraesCS2B01G178400 chr2B_153586430 chr2B 153586430 T T G G 4 missense_variant MODERATE transcript unique_Triplet 153585725 153588003 2279 4 0.175515577007459 RFvsST 10057 695693088 695683032 no 46.2243888937343 TraesCS2B01G178400 chr2B_153586259 chr2B 153586259 A A G G 4 missense_variant MODERATE transcript unique_Triplet 153585725 153588003 2279 4 0.175515577007459 RFvsST 10057 695693088 695683032 no 46.2243888937343 TraesCS2B01G178700 chr2B_153762119 chr2B 153762119 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 153760061 153761866 1806 1 0.0553709856035437 RFvsST 10057 695693088 695683032 no 45.9402228008362 TraesCS2B01G178800 chr2B_153859877 chr2B 153859877 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 153855100 153859660 4561 1 0.0219250164437623 RFvsST 10057 695693088 695683032 no 9.4259192511605 TraesCS2B01G179700 chr2B_154255958 chr2B 154255958 T C T C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 154253822 154255987 2166 2 0.0923361034164358 RFvsST 10057 695693088 695683032 no 19.025725963837 TraesCS2B01G179700 chr2B_154254110 chr2B 154254110 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 154253822 154255987 2166 2 0.0923361034164358 RFvsST 10057 695693088 695683032 no 19.025725963837 TraesCS2B01G179800 chr2B_154270981 chr2B 154270981 C T C T 3 synonymous_variant LOW transcript non_Triplet 154269479 154271242 1764 3 0.170068027210884 RFvsST 10057 695693088 695683032 no 195.528787833713 TraesCS2B01G179800 chr2B_154270600 chr2B 154270600 A G A G 3 synonymous_variant LOW transcript non_Triplet 154269479 154271242 1764 3 0.170068027210884 RFvsST 10057 695693088 695683032 no 195.528787833713 TraesCS2B01G179800 chr2B_154270281 chr2B 154270281 T C T C 3 missense_variant MODERATE transcript non_Triplet 154269479 154271242 1764 3 0.170068027210884 RFvsST 10057 695693088 695683032 no 195.528787833713 TraesCS2B01G179900 chr2B_154489723 chr2B 154489723 T G T G 3 synonymous_variant LOW transcript unique_Triplet 154485482 154489828 4347 1 0.0230043708304578 RFvsST 10057 695693088 695683032 no 34.8118595442724 TraesCS2B01G180200 chr2B_154721961 chr2B 154721961 A A G G 4 synonymous_variant LOW transcript unique_Triplet 154719452 154723196 3745 2 0.0534045393858478 RFvsST 10057 695693088 695683032 no 54.2280623271558 TraesCS2B01G180200 chr2B_154719559 chr2B 154719559 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 154719452 154723196 3745 2 0.0534045393858478 RFvsST 10057 695693088 695683032 no 54.2280623271558 TraesCS2B01G180300 chr2B_154831331 chr2B 154831331 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 154830810 154832452 1643 3 0.182592818015825 RFvsST 10057 695693088 695683032 no 204.197280655773 TraesCS2B01G180300 chr2B_154831063 chr2B 154831063 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 154830810 154832452 1643 3 0.182592818015825 RFvsST 10057 695693088 695683032 no 204.197280655773 TraesCS2B01G180300 chr2B_154831540 chr2B 154831540 G C G C 3 missense_variant MODERATE transcript unique_Triplet 154830810 154832452 1643 3 0.182592818015825 RFvsST 10057 695693088 695683032 no 204.197280655773 TraesCS2B01G180400 chr2B_154840306 chr2B 154840306 A A T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 154838925 154840359 1435 4 0.278745644599303 RFvsST 10057 695693088 695683032 no 129.90394859108 TraesCS2B01G180400 chr2B_154839876 chr2B 154839876 G G T T 4 missense_variant MODERATE transcript unique_Triplet 154838925 154840359 1435 4 0.278745644599303 RFvsST 10057 695693088 695683032 no 129.90394859108 TraesCS2B01G180400 chr2B_154840307 chr2B 154840307 T T A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 154838925 154840359 1435 4 0.278745644599303 RFvsST 10057 695693088 695683032 no 129.90394859108 TraesCS2B01G180400 chr2B_154839048 chr2B 154839048 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 154838925 154840359 1435 4 0.278745644599303 RFvsST 10057 695693088 695683032 no 129.90394859108 TraesCS2B01G180600 chr2B_154909837 chr2B 154909837 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154908432 chr2B 154908432 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909882 chr2B 154909882 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909377 chr2B 154909377 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154910139 chr2B 154910139 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909329 chr2B 154909329 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909716 chr2B 154909716 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909385 chr2B 154909385 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154908555 chr2B 154908555 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154910022 chr2B 154910022 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154910126 chr2B 154910126 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154908429 chr2B 154908429 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909416 chr2B 154909416 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909358 chr2B 154909358 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909414 chr2B 154909414 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G180600 chr2B_154909468 chr2B 154909468 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 154912392 154914715 2324 16 0.688468158347676 RFvsST 10057 695693088 695683032 no 16.2915848450025 TraesCS2B01G181200 chr2B_155820087 chr2B 155820087 C C A A 4 synonymous_variant LOW transcript non_Triplet 155820013 155820860 848 1 0.117924528301887 RFvsST 10057 695693088 695683032 no 16.7180642400261 TraesCS2B01G181500 chr2B_156591102 chr2B 156591102 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 156588408 156590403 1996 2 0.100200400801603 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G181500 chr2B_156591114 chr2B 156591114 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 156588408 156590403 1996 2 0.100200400801603 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G181600 chr2B_156592762 chr2B 156592762 A A G G 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156592864 chr2B 156592864 A A T T 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156591532 chr2B 156591532 A A G G 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156592044 chr2B 156592044 T T G G 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156591346 chr2B 156591346 A A G G 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156591520 chr2B 156591520 G G T T 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156591394 chr2B 156591394 A A C C 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G181600 chr2B_156591514 chr2B 156591514 G G A A 4 synonymous_variant LOW transcript unique_Triplet 156591139 156593091 1953 8 0.409626216077829 RFvsST 10057 695693088 695683032 no 196.226612637023 TraesCS2B01G182000 chr2B_157041420 chr2B 157041420 A A T T 4 synonymous_variant LOW transcript non_Triplet 157041051 157041650 600 2 0.333333333333333 RFvsST 10057 695693088 695683032 no 112.947205474114 TraesCS2B01G182000 chr2B_157041581 chr2B 157041581 C C T T 4 missense_variant MODERATE transcript non_Triplet 157041051 157041650 600 2 0.333333333333333 RFvsST 10057 695693088 695683032 no 112.947205474114 TraesCS2B01G182200 chr2B_157266347 chr2B 157266347 C C G G 4 missense_variant MODERATE transcript unique_Triplet 157265505 157266651 1147 1 0.0871839581517001 RFvsST 10057 695693088 695683032 no 18.4367830247192 TraesCS2B01G182600 chr2B_157574525 chr2B 157574525 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 157574314 157580728 6415 2 0.0311769290724864 RFvsST 10057 695693088 695683032 no 121.346881844656 TraesCS2B01G182600 chr2B_157576287 chr2B 157576287 G G A A 4 missense_variant MODERATE transcript unique_Triplet 157574314 157580728 6415 2 0.0311769290724864 RFvsST 10057 695693088 695683032 no 121.346881844656 TraesCS2B01G182800 chr2B_157695245 chr2B 157695245 C A C A 3 missense_variant MODERATE transcript non_Triplet 157688966 157696282 7317 2 0.0273336066694 RFvsST 10057 695693088 695683032 no 840.227511903186 TraesCS2B01G182800 chr2B_157695588 chr2B 157695588 C C T T 4 missense_variant MODERATE transcript non_Triplet 157688966 157696282 7317 2 0.0273336066694 RFvsST 10057 695693088 695683032 no 840.227511903186 TraesCS2B01G183100 chr2B_158146171 chr2B 158146171 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 158146363 158147397 1035 1 0.0966183574879227 RFvsST 10057 695693088 695683032 no 25.8133467328226 TraesCS2B01G183300 chr2B_158618930 chr2B 158618930 C T C T 3 missense_variant MODERATE transcript unique_Triplet 158617043 158618998 1956 4 0.204498977505113 RFvsST 10057 695693088 695683032 no 109.97288732621 TraesCS2B01G183300 chr2B_158618846 chr2B 158618846 T G T G 3 missense_variant MODERATE transcript unique_Triplet 158617043 158618998 1956 4 0.204498977505113 RFvsST 10057 695693088 695683032 no 109.97288732621 TraesCS2B01G183300 chr2B_158616823 chr2B 158616823 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 158617043 158618998 1956 4 0.204498977505113 RFvsST 10057 695693088 695683032 no 109.97288732621 TraesCS2B01G183300 chr2B_158618919 chr2B 158618919 T T C C 4 missense_variant MODERATE transcript unique_Triplet 158617043 158618998 1956 4 0.204498977505113 RFvsST 10057 695693088 695683032 no 109.97288732621 TraesCS2B01G183500 chr2B_158621941 chr2B 158621941 C T C T 3 synonymous_variant LOW transcript non_Triplet 158621342 158624499 3158 4 0.126662444585181 RFvsST 10057 695693088 695683032 no 164.119257138402 TraesCS2B01G183500 chr2B_158622235 chr2B 158622235 C T C T 3 synonymous_variant LOW transcript non_Triplet 158621342 158624499 3158 4 0.126662444585181 RFvsST 10057 695693088 695683032 no 164.119257138402 TraesCS2B01G183500 chr2B_158621935 chr2B 158621935 A G A G 3 synonymous_variant LOW transcript non_Triplet 158621342 158624499 3158 4 0.126662444585181 RFvsST 10057 695693088 695683032 no 164.119257138402 TraesCS2B01G183500 chr2B_158622283 chr2B 158622283 G T G T 3 synonymous_variant LOW transcript non_Triplet 158621342 158624499 3158 4 0.126662444585181 RFvsST 10057 695693088 695683032 no 164.119257138402 TraesCS2B01G183700 chr2B_158643785 chr2B 158643785 T C T C 3 missense_variant MODERATE transcript non_Triplet 158642594 158644350 1757 2 0.113830392714855 RFvsST 10057 695693088 695683032 no 743.071448083778 TraesCS2B01G183700 chr2B_158643756 chr2B 158643756 G A G A 3 synonymous_variant LOW transcript non_Triplet 158642594 158644350 1757 2 0.113830392714855 RFvsST 10057 695693088 695683032 no 743.071448083778 TraesCS2B01G184100 chr2B_159208212 chr2B 159208212 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 159203946 159208120 4175 3 0.0718562874251497 RFvsST 10057 695693088 695683032 no 13.8977833680095 TraesCS2B01G184100 chr2B_159208213 chr2B 159208213 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 159203946 159208120 4175 3 0.0718562874251497 RFvsST 10057 695693088 695683032 no 13.8977833680095 TraesCS2B01G184100 chr2B_159207855 chr2B 159207855 A G A G 3 synonymous_variant LOW transcript unique_Triplet 159203946 159208120 4175 3 0.0718562874251497 RFvsST 10057 695693088 695683032 no 13.8977833680095 TraesCS2B01G185300 chr2B_160401543 chr2B 160401543 T T C C 4 synonymous_variant LOW transcript unique_Triplet 160401169 160407223 6055 1 0.0165152766308836 RFvsST 10057 695693088 695683032 no 60.850852564588 TraesCS2B01G188200 chr2B_163714790 chr2B 163714790 C C A A 4 missense_variant MODERATE transcript non_Triplet 163712747 163715551 2805 1 0.035650623885918 RFvsST 10057 695693088 695683032 no 71.4832537736841 TraesCS2B01G188500 chr2B_164087842 chr2B 164087842 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 164082799 164085665 2867 4 0.139518660620858 RFvsST 10057 695693088 695683032 no 3.6628482555071 TraesCS2B01G188500 chr2B_164087695 chr2B 164087695 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 164082799 164085665 2867 4 0.139518660620858 RFvsST 10057 695693088 695683032 no 3.6628482555071 TraesCS2B01G188500 chr2B_164082769 chr2B 164082769 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 164082799 164085665 2867 4 0.139518660620858 RFvsST 10057 695693088 695683032 no 3.6628482555071 TraesCS2B01G188500 chr2B_164085863 chr2B 164085863 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 164082799 164085665 2867 4 0.139518660620858 RFvsST 10057 695693088 695683032 no 3.6628482555071 TraesCS2B01G188600 chr2B_164088861 chr2B 164088861 G G A A 4 synonymous_variant LOW transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188600 chr2B_164091490 chr2B 164091490 G G T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188600 chr2B_164089285 chr2B 164089285 A A C C 4 missense_variant MODERATE transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188600 chr2B_164088869 chr2B 164088869 T T C C 4 splice_acceptor_variant&intron_variant HIGH transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188600 chr2B_164091526 chr2B 164091526 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188600 chr2B_164088976 chr2B 164088976 C C A A 4 missense_variant MODERATE transcript unique_Triplet 164088726 164091514 2789 6 0.215130871280029 RFvsST 10057 695693088 695683032 no 91.7903435243785 TraesCS2B01G188800 chr2B_164427113 chr2B 164427113 A A G G 4 synonymous_variant LOW transcript unique_Triplet 164419281 164427140 7860 2 0.0254452926208651 RFvsST 10057 695693088 695683032 no 575.329457320893 TraesCS2B01G188800 chr2B_164419256 chr2B 164419256 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 164419281 164427140 7860 2 0.0254452926208651 RFvsST 10057 695693088 695683032 no 575.329457320893 TraesCS2B01G188900 chr2B_164629116 chr2B 164629116 C C G G 4 missense_variant MODERATE transcript unique_Triplet 164628813 164631575 2763 2 0.0723850886717336 RFvsST 10057 695693088 695683032 no 44.1939135746889 TraesCS2B01G188900 chr2B_164629247 chr2B 164629247 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 164628813 164631575 2763 2 0.0723850886717336 RFvsST 10057 695693088 695683032 no 44.1939135746889 TraesCS2B01G189000 chr2B_164638720 chr2B 164638720 T T C C 4 synonymous_variant LOW transcript unique_Triplet 164638702 164642366 3665 2 0.0545702592087312 RFvsST 10057 695693088 695683032 no 15.5179949003736 TraesCS2B01G189000 chr2B_164642324 chr2B 164642324 C C T T 4 synonymous_variant LOW transcript unique_Triplet 164638702 164642366 3665 2 0.0545702592087312 RFvsST 10057 695693088 695683032 no 15.5179949003736 TraesCS2B01G189100 chr2B_164897065 chr2B 164897065 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 164893446 164897232 3787 3 0.07921837866385 RFvsST 10057 695693088 695683032 no 122.434424697761 TraesCS2B01G189100 chr2B_164896367 chr2B 164896367 G G A A 4 synonymous_variant LOW transcript unique_Triplet 164893446 164897232 3787 3 0.07921837866385 RFvsST 10057 695693088 695683032 no 122.434424697761 TraesCS2B01G189100 chr2B_164896382 chr2B 164896382 G G A A 4 synonymous_variant LOW transcript unique_Triplet 164893446 164897232 3787 3 0.07921837866385 RFvsST 10057 695693088 695683032 no 122.434424697761 TraesCS2B01G189300 chr2B_164938839 chr2B 164938839 C C T T 4 synonymous_variant LOW transcript unique_Triplet 164936804 164939999 3196 2 0.0625782227784731 RFvsST 10057 695693088 695683032 no 356.835719362526 TraesCS2B01G189300 chr2B_164938887 chr2B 164938887 A A T T 4 synonymous_variant LOW transcript unique_Triplet 164936804 164939999 3196 2 0.0625782227784731 RFvsST 10057 695693088 695683032 no 356.835719362526 TraesCS2B01G189500 chr2B_165111193 chr2B 165111193 C C T T 4 synonymous_variant LOW transcript unique_Triplet 165111094 165113123 2030 3 0.147783251231527 RFvsST 10057 695693088 695683032 no 73.6526269049049 TraesCS2B01G189500 chr2B_165111289 chr2B 165111289 C C G G 4 synonymous_variant LOW transcript unique_Triplet 165111094 165113123 2030 3 0.147783251231527 RFvsST 10057 695693088 695683032 no 73.6526269049049 TraesCS2B01G189500 chr2B_165112005 chr2B 165112005 G G A A 4 synonymous_variant LOW transcript unique_Triplet 165111094 165113123 2030 3 0.147783251231527 RFvsST 10057 695693088 695683032 no 73.6526269049049 TraesCS2B01G190000 chr2B_165276328 chr2B 165276328 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 165277697 165278302 606 2 0.33003300330033 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G190000 chr2B_165276289 chr2B 165276289 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 165277697 165278302 606 2 0.33003300330033 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G190200 chr2B_165522512 chr2B 165522512 G A G A 3 missense_variant MODERATE transcript unique_Triplet 165522452 165523693 1242 1 0.0805152979066023 RFvsST 10057 695693088 695683032 no 58.3505020175623 TraesCS2B01G191100 chr2B_166472440 chr2B 166472440 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 166468675 166471537 2863 1 0.0349283967865875 RFvsST 10057 695693088 695683032 no 3.50882131058639 TraesCS2B01G192000 chr2B_167476332 chr2B 167476332 G G T T 4 synonymous_variant LOW transcript unique_Triplet 167475838 167476948 1111 2 0.18001800180018 RFvsST 10057 695693088 695683032 no 75.2409667742805 TraesCS2B01G192000 chr2B_167476875 chr2B 167476875 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 167475838 167476948 1111 2 0.18001800180018 RFvsST 10057 695693088 695683032 no 75.2409667742805 TraesCS2B01G192300 chr2B_167798344 chr2B 167798344 C T C T 3 missense_variant MODERATE transcript unique_Triplet 167797799 167800434 2636 2 0.0758725341426404 RFvsST 10057 695693088 695683032 no 943.567138430398 TraesCS2B01G192300 chr2B_167799316 chr2B 167799316 C C T T 4 missense_variant MODERATE transcript unique_Triplet 167797799 167800434 2636 2 0.0758725341426404 RFvsST 10057 695693088 695683032 no 943.567138430398 TraesCS2B01G197100 chr2B_174924510 chr2B 174924510 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 174923251 174932535 9285 1 0.0107700592353258 RFvsST 10057 695693088 695683032 no 96.4933381905657 TraesCS2B01G197200 chr2B_175060193 chr2B 175060193 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 175060227 175060664 438 2 0.45662100456621 RFvsST 10057 695693088 695683032 no 656.889902339798 TraesCS2B01G197200 chr2B_175060695 chr2B 175060695 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 175060227 175060664 438 2 0.45662100456621 RFvsST 10057 695693088 695683032 no 656.889902339798 TraesCS2B01G197900 chr2B_175537701 chr2B 175537701 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 175537350 175540863 3514 1 0.0284575981787137 RFvsST 10057 695693088 695683032 no 28.5490470478982 TraesCS2B01G198100 chr2B_175627398 chr2B 175627398 C C A A 4 synonymous_variant LOW transcript non_Triplet 175627020 175627820 801 3 0.374531835205993 RFvsST 10057 695693088 695683032 no 221.788959562846 TraesCS2B01G198100 chr2B_175631373 chr2B 175631373 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 175627020 175627820 801 3 0.374531835205993 RFvsST 10057 695693088 695683032 no 221.788959562846 TraesCS2B01G198100 chr2B_175627301 chr2B 175627301 C C G G 4 missense_variant MODERATE transcript non_Triplet 175627020 175627820 801 3 0.374531835205993 RFvsST 10057 695693088 695683032 no 221.788959562846 TraesCS2B01G198400 chr2B_175897161 chr2B 175897161 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 175895190 175897148 1959 3 0.153139356814701 RFvsST 10057 695693088 695683032 no 66.396685920996 TraesCS2B01G198400 chr2B_175895437 chr2B 175895437 C C T T 4 synonymous_variant LOW transcript unique_Triplet 175895190 175897148 1959 3 0.153139356814701 RFvsST 10057 695693088 695683032 no 66.396685920996 TraesCS2B01G198400 chr2B_175895559 chr2B 175895559 G T G T 3 missense_variant MODERATE transcript unique_Triplet 175895190 175897148 1959 3 0.153139356814701 RFvsST 10057 695693088 695683032 no 66.396685920996 TraesCS2B01G198500 chr2B_176167950 chr2B 176167950 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176167954 chr2B 176167954 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176168174 chr2B 176168174 C T C T 3 synonymous_variant LOW transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176167994 chr2B 176167994 C T C T 3 synonymous_variant LOW transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176169520 chr2B 176169520 G A G A 3 synonymous_variant LOW transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176172650 chr2B 176172650 C G C G 3 synonymous_variant LOW transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198500 chr2B_176167951 chr2B 176167951 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 176167985 176172676 4692 7 0.149190110826939 RFvsST 10057 695693088 695683032 no 93.7551149801121 TraesCS2B01G198600 chr2B_176294798 chr2B 176294798 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 176294981 176299996 5016 4 0.0797448165869219 RFvsST 10057 695693088 695683032 no 144.479479077044 TraesCS2B01G198600 chr2B_176294679 chr2B 176294679 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 176294981 176299996 5016 4 0.0797448165869219 RFvsST 10057 695693088 695683032 no 144.479479077044 TraesCS2B01G198600 chr2B_176294732 chr2B 176294732 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 176294981 176299996 5016 4 0.0797448165869219 RFvsST 10057 695693088 695683032 no 144.479479077044 TraesCS2B01G198600 chr2B_176299877 chr2B 176299877 C A C A 3 synonymous_variant LOW transcript unique_Triplet 176294981 176299996 5016 4 0.0797448165869219 RFvsST 10057 695693088 695683032 no 144.479479077044 TraesCS2B01G198700 chr2B_176408915 chr2B 176408915 T C T C 3 missense_variant MODERATE transcript unique_Triplet 176406772 176409106 2335 2 0.0856531049250535 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G198700 chr2B_176408845 chr2B 176408845 G G C C 4 missense_variant MODERATE transcript unique_Triplet 176406772 176409106 2335 2 0.0856531049250535 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G198800 chr2B_176413429 chr2B 176413429 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 176407685 176412003 4319 1 0.0231535077564251 RFvsST 10057 695693088 695683032 no 512.394817453915 TraesCS2B01G199000 chr2B_176705865 chr2B 176705865 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176706035 chr2B 176706035 A G A G 3 synonymous_variant LOW transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176705948 chr2B 176705948 G A G A 3 synonymous_variant LOW transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176708167 chr2B 176708167 T T C C 4 missense_variant MODERATE transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176707866 chr2B 176707866 T C T C 3 synonymous_variant LOW transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176706011 chr2B 176706011 A G A G 3 synonymous_variant LOW transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199000 chr2B_176707788 chr2B 176707788 C T C T 3 synonymous_variant LOW transcript unique_Triplet 176705722 176708590 2869 7 0.243987452073893 RFvsST 10057 695693088 695683032 no 510.769195045254 TraesCS2B01G199500 chr2B_177650257 chr2B 177650257 T T C C 4 missense_variant MODERATE transcript unique_Triplet 177649553 177657471 7919 5 0.0631392852632908 RFvsST 10057 695693088 695683032 no 179.378903607802 TraesCS2B01G199500 chr2B_177649754 chr2B 177649754 C C T T 4 synonymous_variant LOW transcript unique_Triplet 177649553 177657471 7919 5 0.0631392852632908 RFvsST 10057 695693088 695683032 no 179.378903607802 TraesCS2B01G199500 chr2B_177650066 chr2B 177650066 G G A A 4 synonymous_variant LOW transcript unique_Triplet 177649553 177657471 7919 5 0.0631392852632908 RFvsST 10057 695693088 695683032 no 179.378903607802 TraesCS2B01G199500 chr2B_177649726 chr2B 177649726 C C T T 4 missense_variant MODERATE transcript unique_Triplet 177649553 177657471 7919 5 0.0631392852632908 RFvsST 10057 695693088 695683032 no 179.378903607802 TraesCS2B01G199500 chr2B_177649591 chr2B 177649591 C C T T 4 missense_variant MODERATE transcript unique_Triplet 177649553 177657471 7919 5 0.0631392852632908 RFvsST 10057 695693088 695683032 no 179.378903607802 TraesCS2B01G199800 chr2B_178338667 chr2B 178338667 G G A A 4 missense_variant MODERATE transcript unique_Triplet 178338316 178338993 678 1 0.147492625368732 RFvsST 10057 695693088 695683032 no 262.030323821239 TraesCS2B01G200300 chr2B_178774640 chr2B 178774640 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 178775152 178775718 567 4 0.705467372134039 RFvsST 10057 695693088 695683032 no 523.09158741842 TraesCS2B01G200300 chr2B_178774165 chr2B 178774165 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 178775152 178775718 567 4 0.705467372134039 RFvsST 10057 695693088 695683032 no 523.09158741842 TraesCS2B01G200300 chr2B_178771723 chr2B 178771723 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 178775152 178775718 567 4 0.705467372134039 RFvsST 10057 695693088 695683032 no 523.09158741842 TraesCS2B01G200300 chr2B_178771149 chr2B 178771149 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 178775152 178775718 567 4 0.705467372134039 RFvsST 10057 695693088 695683032 no 523.09158741842 TraesCS2B01G200400 chr2B_178857587 chr2B 178857587 C C G G 4 missense_variant MODERATE transcript non_Triplet 178857252 178857722 471 1 0.212314225053079 RFvsST 10057 695693088 695683032 no 51.2708566791226 TraesCS2B01G201300 chr2B_180543514 chr2B 180543514 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 180546232 180546897 666 2 0.3003003003003 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G201300 chr2B_180543442 chr2B 180543442 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 180546232 180546897 666 2 0.3003003003003 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G202600 chr2B_182356508 chr2B 182356508 C T C T 3 missense_variant MODERATE transcript unique_Triplet 182356504 182360936 4433 3 0.0676742612226483 RFvsST 10057 695693088 695683032 no 40.3538742963021 TraesCS2B01G202600 chr2B_182361143 chr2B 182361143 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 182356504 182360936 4433 3 0.0676742612226483 RFvsST 10057 695693088 695683032 no 40.3538742963021 TraesCS2B01G202600 chr2B_182358802 chr2B 182358802 C C A A 4 missense_variant MODERATE transcript unique_Triplet 182356504 182360936 4433 3 0.0676742612226483 RFvsST 10057 695693088 695683032 no 40.3538742963021 TraesCS2B01G202700 chr2B_182569396 chr2B 182569396 C C T T 4 synonymous_variant LOW transcript unique_Triplet 182569319 182570997 1679 4 0.238237045860631 RFvsST 10057 695693088 695683032 no 286.865752743893 TraesCS2B01G202700 chr2B_182570553 chr2B 182570553 T T C C 4 synonymous_variant LOW transcript unique_Triplet 182569319 182570997 1679 4 0.238237045860631 RFvsST 10057 695693088 695683032 no 286.865752743893 TraesCS2B01G202700 chr2B_182571115 chr2B 182571115 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 182569319 182570997 1679 4 0.238237045860631 RFvsST 10057 695693088 695683032 no 286.865752743893 TraesCS2B01G202700 chr2B_182569124 chr2B 182569124 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 182569319 182570997 1679 4 0.238237045860631 RFvsST 10057 695693088 695683032 no 286.865752743893 TraesCS2B01G203800 chr2B_183315450 chr2B 183315450 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 183313966 183314754 789 1 0.126742712294043 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G203900 chr2B_183318443 chr2B 183318443 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 183315462 183317939 2478 3 0.121065375302663 RFvsST 10057 695693088 695683032 no 257.972810320382 TraesCS2B01G203900 chr2B_183318452 chr2B 183318452 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 183315462 183317939 2478 3 0.121065375302663 RFvsST 10057 695693088 695683032 no 257.972810320382 TraesCS2B01G203900 chr2B_183315867 chr2B 183315867 T T A A 4 missense_variant MODERATE transcript unique_Triplet 183315462 183317939 2478 3 0.121065375302663 RFvsST 10057 695693088 695683032 no 257.972810320382 TraesCS2B01G204100 chr2B_183662821 chr2B 183662821 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183659620 chr2B 183659620 G G A A 4 synonymous_variant LOW transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183662834 chr2B 183662834 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183657504 chr2B 183657504 C C G G 4 missense_variant MODERATE transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183658784 chr2B 183658784 C C G G 4 synonymous_variant LOW transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183661226 chr2B 183661226 T T C C 4 synonymous_variant LOW transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204100 chr2B_183657394 chr2B 183657394 G G A A 4 synonymous_variant LOW transcript unique_Triplet 183654052 183662786 8735 7 0.0801373783629078 RFvsST 10057 695693088 695683032 no 198.400923226735 TraesCS2B01G204200 chr2B_184118451 chr2B 184118451 A A C C 4 synonymous_variant LOW transcript unique_Triplet 184114202 184119171 4970 3 0.0603621730382294 RFvsST 10057 695693088 695683032 no 149.051118462357 TraesCS2B01G204200 chr2B_184118553 chr2B 184118553 T T C C 4 synonymous_variant LOW transcript unique_Triplet 184114202 184119171 4970 3 0.0603621730382294 RFvsST 10057 695693088 695683032 no 149.051118462357 TraesCS2B01G204200 chr2B_184114611 chr2B 184114611 G G A A 4 missense_variant MODERATE transcript unique_Triplet 184114202 184119171 4970 3 0.0603621730382294 RFvsST 10057 695693088 695683032 no 149.051118462357 TraesCS2B01G204500 chr2B_184326380 chr2B 184326380 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 184326389 184331831 5443 1 0.0183722212015433 RFvsST 10057 695693088 695683032 no 700.118793259743 TraesCS2B01G204700 chr2B_184408359 chr2B 184408359 A A G G 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 184407899 184410259 2361 1 0.0423549343498518 RFvsST 10057 695693088 695683032 no 40.2259132983609 TraesCS2B01G207000 chr2B_185806967 chr2B 185806967 G G C C 4 missense_variant MODERATE transcript non_Triplet 185806065 185809469 3405 1 0.0293685756240822 RFvsST 10057 695693088 695683032 no 74.6968728434982 TraesCS2B01G207100 chr2B_185815379 chr2B 185815379 G G C C 4 missense_variant MODERATE transcript unique_Triplet 185812484 185815947 3464 1 0.0288683602771363 RFvsST 10057 695693088 695683032 no 71.5610259533629 TraesCS2B01G208300 chr2B_189612751 chr2B 189612751 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 189606779 189608966 2188 2 0.0914076782449726 RFvsST 10057 695693088 695683032 no 4.11542605018136 TraesCS2B01G208300 chr2B_189613570 chr2B 189613570 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 189606779 189608966 2188 2 0.0914076782449726 RFvsST 10057 695693088 695683032 no 4.11542605018136 TraesCS2B01G208500 chr2B_189745264 chr2B 189745264 A G A G 3 missense_variant MODERATE transcript unique_Triplet 189745074 189745820 747 3 0.401606425702811 RFvsST 10057 695693088 695683032 no 417.541662298573 TraesCS2B01G208500 chr2B_189745497 chr2B 189745497 C T C T 3 synonymous_variant LOW transcript unique_Triplet 189745074 189745820 747 3 0.401606425702811 RFvsST 10057 695693088 695683032 no 417.541662298573 TraesCS2B01G208500 chr2B_189745387 chr2B 189745387 G A G A 3 missense_variant MODERATE transcript unique_Triplet 189745074 189745820 747 3 0.401606425702811 RFvsST 10057 695693088 695683032 no 417.541662298573 TraesCS2B01G208700 chr2B_190015995 chr2B 190015995 G A G A 3 missense_variant MODERATE transcript unique_Triplet 190012280 190020183 7904 1 0.0126518218623482 RFvsST 10057 695693088 695683032 no 181.304047682197 TraesCS2B01G209200 chr2B_190968784 chr2B 190968784 G G A A 4 synonymous_variant LOW transcript unique_Triplet 190968689 190971867 3179 5 0.157282164202579 RFvsST 10057 695693088 695683032 no 118.086713864535 TraesCS2B01G209200 chr2B_190971930 chr2B 190971930 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 190968689 190971867 3179 5 0.157282164202579 RFvsST 10057 695693088 695683032 no 118.086713864535 TraesCS2B01G209200 chr2B_190970590 chr2B 190970590 T T C C 4 synonymous_variant LOW transcript unique_Triplet 190968689 190971867 3179 5 0.157282164202579 RFvsST 10057 695693088 695683032 no 118.086713864535 TraesCS2B01G209200 chr2B_190970428 chr2B 190970428 T T G G 4 missense_variant MODERATE transcript unique_Triplet 190968689 190971867 3179 5 0.157282164202579 RFvsST 10057 695693088 695683032 no 118.086713864535 TraesCS2B01G209200 chr2B_190971834 chr2B 190971834 T T C C 4 synonymous_variant LOW transcript unique_Triplet 190968689 190971867 3179 5 0.157282164202579 RFvsST 10057 695693088 695683032 no 118.086713864535 TraesCS2B01G209300 chr2B_191543553 chr2B 191543553 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191539459 chr2B 191539459 T T C C 4 synonymous_variant LOW transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191543459 chr2B 191543459 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191542324 chr2B 191542324 G G A A 4 synonymous_variant LOW transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191541719 chr2B 191541719 C C T T 4 missense_variant MODERATE transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191542135 chr2B 191542135 G G C C 4 missense_variant MODERATE transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209300 chr2B_191542480 chr2B 191542480 T T C C 4 missense_variant MODERATE transcript unique_Triplet 191537991 191543313 5323 7 0.131504790531655 RFvsST 10057 695693088 695683032 no 97.1791858631772 TraesCS2B01G209600 chr2B_191752438 chr2B 191752438 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191747275 191752326 5052 4 0.0791765637371338 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G209600 chr2B_191752421 chr2B 191752421 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191747275 191752326 5052 4 0.0791765637371338 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G209600 chr2B_191744131 chr2B 191744131 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191747275 191752326 5052 4 0.0791765637371338 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G209600 chr2B_191752685 chr2B 191752685 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191747275 191752326 5052 4 0.0791765637371338 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G209700 chr2B_191879555 chr2B 191879555 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191877848 191879409 1562 2 0.128040973111396 RFvsST 10057 695693088 695683032 no 477.891999486981 TraesCS2B01G209700 chr2B_191877786 chr2B 191877786 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191877848 191879409 1562 2 0.128040973111396 RFvsST 10057 695693088 695683032 no 477.891999486981 TraesCS2B01G210000 chr2B_192438526 chr2B 192438526 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 192437025 192438366 1342 2 0.14903129657228 RFvsST 10057 695693088 695683032 no 689.568197903989 TraesCS2B01G210000 chr2B_192437416 chr2B 192437416 T T A A 4 missense_variant MODERATE transcript unique_Triplet 192437025 192438366 1342 2 0.14903129657228 RFvsST 10057 695693088 695683032 no 689.568197903989 TraesCS2B01G210200 chr2B_193210544 chr2B 193210544 C C T T 4 missense_variant MODERATE transcript unique_Triplet 193210413 193210907 495 2 0.404040404040404 RFvsST 10057 695693088 695683032 no 119.692355831456 TraesCS2B01G210200 chr2B_193210485 chr2B 193210485 A A C C 4 missense_variant MODERATE transcript unique_Triplet 193210413 193210907 495 2 0.404040404040404 RFvsST 10057 695693088 695683032 no 119.692355831456 TraesCS2B01G210700 chr2B_194643326 chr2B 194643326 T T G G 4 missense_variant MODERATE transcript unique_Triplet 194635333 194645854 10522 1 0.00950389659760502 RFvsST 10057 695693088 695683032 no 167.647348992626 TraesCS2B01G212500 chr2B_197149813 chr2B 197149813 T T C C 4 missense_variant MODERATE transcript unique_Triplet 197147365 197152633 5269 1 0.0189789333839438 RFvsST 10057 695693088 695683032 no 20.4448087726026 TraesCS2B01G213200 chr2B_197704970 chr2B 197704970 C C T T 4 synonymous_variant LOW transcript non_Triplet 197704322 197709492 5171 1 0.0193386192225875 RFvsST 10057 695693088 695683032 no 89.0818820119479 TraesCS2B01G213400 chr2B_197724829 chr2B 197724829 C C T T 4 synonymous_variant LOW transcript unique_Triplet 197721988 197726261 4274 3 0.0701918577445016 RFvsST 10057 695693088 695683032 no 126.909953545743 TraesCS2B01G213400 chr2B_197724238 chr2B 197724238 C C T T 4 missense_variant MODERATE transcript unique_Triplet 197721988 197726261 4274 3 0.0701918577445016 RFvsST 10057 695693088 695683032 no 126.909953545743 TraesCS2B01G213400 chr2B_197724991 chr2B 197724991 A A C C 4 missense_variant MODERATE transcript unique_Triplet 197721988 197726261 4274 3 0.0701918577445016 RFvsST 10057 695693088 695683032 no 126.909953545743 TraesCS2B01G213600 chr2B_198073045 chr2B 198073045 T T A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 198069529 198073187 3659 2 0.0546597430992074 RFvsST 10057 695693088 695683032 no 800.629061734694 TraesCS2B01G213600 chr2B_198072895 chr2B 198072895 G G T T 4 synonymous_variant LOW transcript non_Triplet 198069529 198073187 3659 2 0.0546597430992074 RFvsST 10057 695693088 695683032 no 800.629061734694 TraesCS2B01G214100 chr2B_199019028 chr2B 199019028 G G A A 4 missense_variant MODERATE transcript unique_Triplet 199011247 199019318 8072 2 0.0247770069375619 RFvsST 10057 695693088 695683032 no 157.997875968288 TraesCS2B01G214100 chr2B_199015726 chr2B 199015726 A A G G 4 missense_variant MODERATE transcript unique_Triplet 199011247 199019318 8072 2 0.0247770069375619 RFvsST 10057 695693088 695683032 no 157.997875968288 TraesCS2B01G214200 chr2B_199022312 chr2B 199022312 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 199020510 199021040 531 4 0.753295668549906 RFvsST 10057 695693088 695683032 no 10.6450718169339 TraesCS2B01G214200 chr2B_199022655 chr2B 199022655 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 199020510 199021040 531 4 0.753295668549906 RFvsST 10057 695693088 695683032 no 10.6450718169339 TraesCS2B01G214200 chr2B_199022428 chr2B 199022428 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 199020510 199021040 531 4 0.753295668549906 RFvsST 10057 695693088 695683032 no 10.6450718169339 TraesCS2B01G214200 chr2B_199022306 chr2B 199022306 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 199020510 199021040 531 4 0.753295668549906 RFvsST 10057 695693088 695683032 no 10.6450718169339 TraesCS2B01G214300 chr2B_199122189 chr2B 199122189 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 199122460 199123426 967 1 0.103412616339193 RFvsST 10057 695693088 695683032 no 61.9785469543653 TraesCS2B01G214700 chr2B_199763074 chr2B 199763074 G A G A 3 missense_variant MODERATE transcript unique_Triplet 199761815 199765748 3934 3 0.0762582613116421 RFvsST 10057 695693088 695683032 no 105.322301986099 TraesCS2B01G214700 chr2B_199763154 chr2B 199763154 C T C T 3 synonymous_variant LOW transcript unique_Triplet 199761815 199765748 3934 3 0.0762582613116421 RFvsST 10057 695693088 695683032 no 105.322301986099 TraesCS2B01G214700 chr2B_199762230 chr2B 199762230 T T C C 4 synonymous_variant LOW transcript unique_Triplet 199761815 199765748 3934 3 0.0762582613116421 RFvsST 10057 695693088 695683032 no 105.322301986099 TraesCS2B01G214800 chr2B_200014359 chr2B 200014359 C A C A 3 missense_variant MODERATE transcript unique_Triplet 200014136 200019736 5601 1 0.0178539546509552 RFvsST 10057 695693088 695683032 no 84.797033216805 TraesCS2B01G215700 chr2B_200902664 chr2B 200902664 C C G G 4 missense_variant MODERATE transcript non_Triplet 200902022 200906193 4172 2 0.0479386385426654 RFvsST 10057 695693088 695683032 no 297.809097469198 TraesCS2B01G215700 chr2B_200902652 chr2B 200902652 C A C A 3 missense_variant MODERATE transcript non_Triplet 200902022 200906193 4172 2 0.0479386385426654 RFvsST 10057 695693088 695683032 no 297.809097469198 TraesCS2B01G215900 chr2B_201373771 chr2B 201373771 G T G T 3 missense_variant MODERATE transcript unique_Triplet 201369165 201376213 7049 2 0.0283728188395517 RFvsST 10057 695693088 695683032 no 91.4713383272006 TraesCS2B01G215900 chr2B_201373029 chr2B 201373029 G A G A 3 stop_gained HIGH transcript unique_Triplet 201369165 201376213 7049 2 0.0283728188395517 RFvsST 10057 695693088 695683032 no 91.4713383272006 TraesCS2B01G216100 chr2B_201473119 chr2B 201473119 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 201463248 201472863 9616 4 0.0415973377703827 RFvsST 10057 695693088 695683032 no 41.2649086448367 TraesCS2B01G216100 chr2B_201463130 chr2B 201463130 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 201463248 201472863 9616 4 0.0415973377703827 RFvsST 10057 695693088 695683032 no 41.2649086448367 TraesCS2B01G216100 chr2B_201463052 chr2B 201463052 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 201463248 201472863 9616 4 0.0415973377703827 RFvsST 10057 695693088 695683032 no 41.2649086448367 TraesCS2B01G216100 chr2B_201472999 chr2B 201472999 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 201463248 201472863 9616 4 0.0415973377703827 RFvsST 10057 695693088 695683032 no 41.2649086448367 TraesCS2B01G216200 chr2B_201771010 chr2B 201771010 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 201769193 201770506 1314 5 0.380517503805175 RFvsST 10057 695693088 695683032 no 283.410439975226 TraesCS2B01G216200 chr2B_201769241 chr2B 201769241 C C T T 4 synonymous_variant LOW transcript unique_Triplet 201769193 201770506 1314 5 0.380517503805175 RFvsST 10057 695693088 695683032 no 283.410439975226 TraesCS2B01G216200 chr2B_201769668 chr2B 201769668 A G A G 3 missense_variant MODERATE transcript unique_Triplet 201769193 201770506 1314 5 0.380517503805175 RFvsST 10057 695693088 695683032 no 283.410439975226 TraesCS2B01G216200 chr2B_201769802 chr2B 201769802 A G A G 3 synonymous_variant LOW transcript unique_Triplet 201769193 201770506 1314 5 0.380517503805175 RFvsST 10057 695693088 695683032 no 283.410439975226 TraesCS2B01G216200 chr2B_201769665 chr2B 201769665 G A G A 3 missense_variant MODERATE transcript unique_Triplet 201769193 201770506 1314 5 0.380517503805175 RFvsST 10057 695693088 695683032 no 283.410439975226 TraesCS2B01G216300 chr2B_202156123 chr2B 202156123 C T C T 3 missense_variant MODERATE transcript unique_Triplet 202154988 202157126 2139 5 0.233754090696587 RFvsST 10057 695693088 695683032 no 272.553158845979 TraesCS2B01G216300 chr2B_202155891 chr2B 202155891 T C T C 3 synonymous_variant LOW transcript unique_Triplet 202154988 202157126 2139 5 0.233754090696587 RFvsST 10057 695693088 695683032 no 272.553158845979 TraesCS2B01G216300 chr2B_202156529 chr2B 202156529 C T C T 3 missense_variant MODERATE transcript unique_Triplet 202154988 202157126 2139 5 0.233754090696587 RFvsST 10057 695693088 695683032 no 272.553158845979 TraesCS2B01G216300 chr2B_202154799 chr2B 202154799 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 202154988 202157126 2139 5 0.233754090696587 RFvsST 10057 695693088 695683032 no 272.553158845979 TraesCS2B01G216300 chr2B_202156693 chr2B 202156693 A G A G 3 missense_variant MODERATE transcript unique_Triplet 202154988 202157126 2139 5 0.233754090696587 RFvsST 10057 695693088 695683032 no 272.553158845979 TraesCS2B01G216400 chr2B_202482617 chr2B 202482617 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 202482266 202485595 3330 2 0.0600600600600601 RFvsST 10057 695693088 695683032 no 2478.09975818416 TraesCS2B01G216400 chr2B_202485733 chr2B 202485733 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 202482266 202485595 3330 2 0.0600600600600601 RFvsST 10057 695693088 695683032 no 2478.09975818416 TraesCS2B01G216600 chr2B_202739508 chr2B 202739508 G C G C 3 synonymous_variant LOW transcript unique_Triplet 202739368 202742839 3472 1 0.0288018433179724 RFvsST 10057 695693088 695683032 no 253.269768162555 TraesCS2B01G216800 chr2B_202917623 chr2B 202917623 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 202919595 202921502 1908 4 0.209643605870021 RFvsST 10057 695693088 695683032 no 11.2198369726848 TraesCS2B01G216800 chr2B_202917388 chr2B 202917388 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 202919595 202921502 1908 4 0.209643605870021 RFvsST 10057 695693088 695683032 no 11.2198369726848 TraesCS2B01G216800 chr2B_202915505 chr2B 202915505 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 202919595 202921502 1908 4 0.209643605870021 RFvsST 10057 695693088 695683032 no 11.2198369726848 TraesCS2B01G216800 chr2B_202917822 chr2B 202917822 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 202919595 202921502 1908 4 0.209643605870021 RFvsST 10057 695693088 695683032 no 11.2198369726848 TraesCS2B01G218100 chr2B_206751930 chr2B 206751930 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 206752275 206755388 3114 1 0.0321130378933847 RFvsST 10057 695693088 695683032 no 81.7831065843901 TraesCS2B01G219700 chr2B_210262587 chr2B 210262587 T C T C 3 synonymous_variant LOW transcript unique_Triplet 210259565 210264633 5069 4 0.0789110278161373 RFvsST 10057 695693088 695683032 no 112.71944563606 TraesCS2B01G219700 chr2B_210259511 chr2B 210259511 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 210259565 210264633 5069 4 0.0789110278161373 RFvsST 10057 695693088 695683032 no 112.71944563606 TraesCS2B01G219700 chr2B_210259866 chr2B 210259866 T C T C 3 synonymous_variant LOW transcript unique_Triplet 210259565 210264633 5069 4 0.0789110278161373 RFvsST 10057 695693088 695683032 no 112.71944563606 TraesCS2B01G219700 chr2B_210259697 chr2B 210259697 A A G G 4 synonymous_variant LOW transcript unique_Triplet 210259565 210264633 5069 4 0.0789110278161373 RFvsST 10057 695693088 695683032 no 112.71944563606 TraesCS2B01G219800 chr2B_210453993 chr2B 210453993 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 210454067 210456341 2275 1 0.043956043956044 RFvsST 10057 695693088 695683032 no 26.3926312807059 TraesCS2B01G220000 chr2B_210467648 chr2B 210467648 A G A G 3 missense_variant MODERATE transcript unique_Triplet 210462884 210467780 4897 1 0.0204206657137023 RFvsST 10057 695693088 695683032 no 376.168258849052 TraesCS2B01G220100 chr2B_210653177 chr2B 210653177 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 210652278 210653431 1154 1 0.0866551126516464 RFvsST 10057 695693088 695683032 no 18467.1824405695 TraesCS2B01G220200 chr2B_210665815 chr2B 210665815 A A G G 4 missense_variant MODERATE transcript unique_Triplet 210663204 210665837 2634 1 0.0379650721336371 RFvsST 10057 695693088 695683032 no 79.9815079024056 TraesCS2B01G220300 chr2B_210664808 chr2B 210664808 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 210667449 210669437 1989 1 0.0502765208647562 RFvsST 10057 695693088 695683032 no 20.5737006448234 TraesCS2B01G220700 chr2B_210931810 chr2B 210931810 A A T T 4 synonymous_variant LOW transcript non_Triplet 210930709 210932721 2013 3 0.14903129657228 RFvsST 10057 695693088 695683032 no 178.05596923128 TraesCS2B01G220700 chr2B_210932112 chr2B 210932112 T T C C 4 missense_variant MODERATE transcript non_Triplet 210930709 210932721 2013 3 0.14903129657228 RFvsST 10057 695693088 695683032 no 178.05596923128 TraesCS2B01G220700 chr2B_210930832 chr2B 210930832 C C G G 4 synonymous_variant LOW transcript non_Triplet 210930709 210932721 2013 3 0.14903129657228 RFvsST 10057 695693088 695683032 no 178.05596923128 TraesCS2B01G221600 chr2B_211528920 chr2B 211528920 G T G T 3 missense_variant MODERATE transcript unique_Triplet 211525783 211535313 9531 4 0.0419683139229881 RFvsST 10057 695693088 695683032 no 365.512139483421 TraesCS2B01G221600 chr2B_211529650 chr2B 211529650 C C T T 4 synonymous_variant LOW transcript unique_Triplet 211525783 211535313 9531 4 0.0419683139229881 RFvsST 10057 695693088 695683032 no 365.512139483421 TraesCS2B01G221600 chr2B_211533463 chr2B 211533463 C C T T 4 synonymous_variant LOW transcript unique_Triplet 211525783 211535313 9531 4 0.0419683139229881 RFvsST 10057 695693088 695683032 no 365.512139483421 TraesCS2B01G221600 chr2B_211535314 chr2B 211535314 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 211525783 211535313 9531 4 0.0419683139229881 RFvsST 10057 695693088 695683032 no 365.512139483421 TraesCS2B01G221800 chr2B_211624694 chr2B 211624694 C C G G 4 synonymous_variant LOW transcript unique_Triplet 211624029 211627170 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 280.418633606437 TraesCS2B01G221800 chr2B_211624871 chr2B 211624871 A A G G 4 synonymous_variant LOW transcript unique_Triplet 211624029 211627170 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 280.418633606437 TraesCS2B01G221800 chr2B_211624849 chr2B 211624849 A A G G 4 synonymous_variant LOW transcript unique_Triplet 211624029 211627170 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 280.418633606437 TraesCS2B01G222500 chr2B_212182538 chr2B 212182538 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 212183279 212183743 465 1 0.21505376344086 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G222600 chr2B_212300495 chr2B 212300495 G G C C 4 synonymous_variant LOW transcript unique_Triplet 212296784 212300537 3754 1 0.026638252530634 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G223000 chr2B_212780814 chr2B 212780814 A A C C 4 synonymous_variant LOW transcript unique_Triplet 212774059 212781335 7277 1 0.0137419266181119 RFvsST 10057 695693088 695683032 no 81.967364863502 TraesCS2B01G223400 chr2B_212943743 chr2B 212943743 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 212943696 212944420 725 1 0.137931034482759 RFvsST 10057 695693088 695683032 no 61.3419421451166 TraesCS2B01G223600 chr2B_213254277 chr2B 213254277 C C T T 4 synonymous_variant LOW transcript unique_Triplet 213253068 213255908 2841 2 0.0703977472720873 RFvsST 10057 695693088 695683032 no 412.382719566012 TraesCS2B01G223600 chr2B_213253880 chr2B 213253880 A A G G 4 synonymous_variant LOW transcript unique_Triplet 213253068 213255908 2841 2 0.0703977472720873 RFvsST 10057 695693088 695683032 no 412.382719566012 TraesCS2B01G224600 chr2B_214531354 chr2B 214531354 G G A A 4 missense_variant MODERATE transcript unique_Triplet 214530721 214533956 3236 1 0.030902348578492 RFvsST 10057 695693088 695683032 no 384.448347177792 TraesCS2B01G224800 chr2B_214562845 chr2B 214562845 G G A A 4 missense_variant MODERATE transcript unique_Triplet 214561198 214565107 3910 2 0.051150895140665 RFvsST 10057 695693088 695683032 no 98.0812971048923 TraesCS2B01G224800 chr2B_214562596 chr2B 214562596 C C T T 4 missense_variant MODERATE transcript unique_Triplet 214561198 214565107 3910 2 0.051150895140665 RFvsST 10057 695693088 695683032 no 98.0812971048923 TraesCS2B01G224900 chr2B_214587400 chr2B 214587400 A A G G 4 missense_variant MODERATE transcript non_Triplet 214585722 214588863 3142 1 0.0318268618714195 RFvsST 10057 695693088 695683032 no 81.7146252852205 TraesCS2B01G225000 chr2B_214596657 chr2B 214596657 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 214591989 214594751 2763 4 0.144770177343467 RFvsST 10057 695693088 695683032 no 299.651750298128 TraesCS2B01G225000 chr2B_214594431 chr2B 214594431 T T A A 4 missense_variant MODERATE transcript non_Triplet 214591989 214594751 2763 4 0.144770177343467 RFvsST 10057 695693088 695683032 no 299.651750298128 TraesCS2B01G225000 chr2B_214594478 chr2B 214594478 G G A A 4 synonymous_variant LOW transcript non_Triplet 214591989 214594751 2763 4 0.144770177343467 RFvsST 10057 695693088 695683032 no 299.651750298128 TraesCS2B01G225000 chr2B_214592172 chr2B 214592172 G G A A 4 missense_variant MODERATE transcript non_Triplet 214591989 214594751 2763 4 0.144770177343467 RFvsST 10057 695693088 695683032 no 299.651750298128 TraesCS2B01G225200 chr2B_215203783 chr2B 215203783 C C T T 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215202252 chr2B 215202252 C C T T 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215204262 chr2B 215204262 T T C C 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215205975 chr2B 215205975 A A G G 4 splice_region_variant LOW transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215204347 chr2B 215204347 G G A A 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215202639 chr2B 215202639 G G C C 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215200011 chr2B 215200011 C C T T 4 synonymous_variant LOW transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215201409 chr2B 215201409 A A C C 4 synonymous_variant LOW transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215200682 chr2B 215200682 G G A A 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215199516 chr2B 215199516 G G A A 4 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225200 chr2B_215200671 chr2B 215200671 T A T A 3 missense_variant MODERATE transcript unique_Triplet 215198840 215206097 7258 11 0.151556902728024 RFvsST 10057 695693088 695683032 no 2199.56507646544 TraesCS2B01G225800 chr2B_216449294 chr2B 216449294 C C A A 4 missense_variant MODERATE transcript unique_Triplet 216449121 216467856 18736 3 0.0160119555935098 RFvsST 10057 695693088 695683032 no 215.575515512702 TraesCS2B01G225800 chr2B_216456541 chr2B 216456541 A A G G 4 missense_variant MODERATE transcript unique_Triplet 216449121 216467856 18736 3 0.0160119555935098 RFvsST 10057 695693088 695683032 no 215.575515512702 TraesCS2B01G225800 chr2B_216467902 chr2B 216467902 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 216449121 216467856 18736 3 0.0160119555935098 RFvsST 10057 695693088 695683032 no 215.575515512702 TraesCS2B01G225900 chr2B_216710393 chr2B 216710393 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 216708391 216711242 2852 1 0.0350631136044881 RFvsST 10057 695693088 695683032 no 1972.77036823751 TraesCS2B01G226000 chr2B_216853963 chr2B 216853963 G G A A 4 missense_variant MODERATE transcript unique_Triplet 216853542 216856292 2751 4 0.145401672119229 RFvsST 10057 695693088 695683032 no 64.1656111406916 TraesCS2B01G226000 chr2B_216854152 chr2B 216854152 A A G G 4 missense_variant MODERATE transcript unique_Triplet 216853542 216856292 2751 4 0.145401672119229 RFvsST 10057 695693088 695683032 no 64.1656111406916 TraesCS2B01G226000 chr2B_216853655 chr2B 216853655 T A T A 3 missense_variant MODERATE transcript unique_Triplet 216853542 216856292 2751 4 0.145401672119229 RFvsST 10057 695693088 695683032 no 64.1656111406916 TraesCS2B01G226000 chr2B_216853656 chr2B 216853656 C A C A 3 synonymous_variant LOW transcript unique_Triplet 216853542 216856292 2751 4 0.145401672119229 RFvsST 10057 695693088 695683032 no 64.1656111406916 TraesCS2B01G226100 chr2B_216940469 chr2B 216940469 G G T T 4 synonymous_variant LOW transcript unique_Triplet 216939112 216941094 1983 1 0.0504286434694907 RFvsST 10057 695693088 695683032 no 61.6375747498544 TraesCS2B01G226600 chr2B_217397925 chr2B 217397925 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 217396708 217398274 1567 2 0.127632418634333 RFvsST 10057 695693088 695683032 no 153.832828955393 TraesCS2B01G226600 chr2B_217397071 chr2B 217397071 A A G G 4 missense_variant MODERATE transcript unique_Triplet 217396708 217398274 1567 2 0.127632418634333 RFvsST 10057 695693088 695683032 no 153.832828955393 TraesCS2B01G226700 chr2B_217405532 chr2B 217405532 G G A A 4 synonymous_variant LOW transcript unique_Triplet 217404507 217409732 5226 2 0.0382701875239189 RFvsST 10057 695693088 695683032 no 264.496520820813 TraesCS2B01G226700 chr2B_217407534 chr2B 217407534 G G C C 4 missense_variant MODERATE transcript unique_Triplet 217404507 217409732 5226 2 0.0382701875239189 RFvsST 10057 695693088 695683032 no 264.496520820813 TraesCS2B01G227000 chr2B_217790053 chr2B 217790053 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 217790096 217793500 3405 1 0.0293685756240822 RFvsST 10057 695693088 695683032 no 267.932177480608 TraesCS2B01G227100 chr2B_217908634 chr2B 217908634 A A G G 4 missense_variant MODERATE transcript unique_Triplet 217907924 217911579 3656 2 0.0547045951859956 RFvsST 10057 695693088 695683032 no 139.23840753997 TraesCS2B01G227100 chr2B_217910805 chr2B 217910805 T T C C 4 synonymous_variant LOW transcript unique_Triplet 217907924 217911579 3656 2 0.0547045951859956 RFvsST 10057 695693088 695683032 no 139.23840753997 TraesCS2B01G227200 chr2B_218293919 chr2B 218293919 G G A A 4 stop_gained HIGH transcript non_Triplet 218291237 218294063 2827 3 0.10611956137248 RFvsST 10057 695693088 695683032 no 65.0409139074615 TraesCS2B01G227200 chr2B_218294220 chr2B 218294220 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 218291237 218294063 2827 3 0.10611956137248 RFvsST 10057 695693088 695683032 no 65.0409139074615 TraesCS2B01G227200 chr2B_218293363 chr2B 218293363 G G A A 4 missense_variant MODERATE transcript non_Triplet 218291237 218294063 2827 3 0.10611956137248 RFvsST 10057 695693088 695683032 no 65.0409139074615 TraesCS2B01G227400 chr2B_219296160 chr2B 219296160 A A G G 4 synonymous_variant LOW transcript non_Triplet 219295283 219297446 2164 1 0.0462107208872458 RFvsST 10057 695693088 695683032 no 62.6423103830192 TraesCS2B01G227500 chr2B_221088148 chr2B 221088148 C C T T 4 synonymous_variant LOW transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221086824 chr2B 221086824 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221088386 chr2B 221088386 G G A A 4 missense_variant MODERATE transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221089218 chr2B 221089218 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221087670 chr2B 221087670 G G A A 4 missense_variant MODERATE transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221086826 chr2B 221086826 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221088896 chr2B 221088896 T T A A 4 missense_variant MODERATE transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221087209 chr2B 221087209 A A T T 4 synonymous_variant LOW transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221088897 chr2B 221088897 C C A A 4 stop_gained HIGH transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227500 chr2B_221089185 chr2B 221089185 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 221087174 221089183 2010 10 0.497512437810945 RFvsST 10057 695693088 695683032 no 552.999439668132 TraesCS2B01G227600 chr2B_221097461 chr2B 221097461 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 221090805 221097449 6645 1 0.0150489089541008 RFvsST 10057 695693088 695683032 no 65.5261866229864 TraesCS2B01G228300 chr2B_222124132 chr2B 222124132 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 222122931 222124253 1323 2 0.151171579743008 RFvsST 10057 695693088 695683032 no 166.923091636361 TraesCS2B01G228300 chr2B_222123068 chr2B 222123068 C C T T 4 missense_variant MODERATE transcript unique_Triplet 222122931 222124253 1323 2 0.151171579743008 RFvsST 10057 695693088 695683032 no 166.923091636361 TraesCS2B01G228500 chr2B_222230879 chr2B 222230879 A A G G 4 missense_variant MODERATE transcript unique_Triplet 222218834 222231691 12858 1 0.00777725929382486 RFvsST 10057 695693088 695683032 no 63.3507373310761 TraesCS2B01G228700 chr2B_222593831 chr2B 222593831 G G A A 4 synonymous_variant LOW transcript unique_Triplet 222589020 222594034 5015 3 0.0598205383848455 RFvsST 10057 695693088 695683032 no 124.787684262107 TraesCS2B01G228700 chr2B_222593214 chr2B 222593214 A A G G 4 missense_variant MODERATE transcript unique_Triplet 222589020 222594034 5015 3 0.0598205383848455 RFvsST 10057 695693088 695683032 no 124.787684262107 TraesCS2B01G228700 chr2B_222593780 chr2B 222593780 G G T T 4 synonymous_variant LOW transcript unique_Triplet 222589020 222594034 5015 3 0.0598205383848455 RFvsST 10057 695693088 695683032 no 124.787684262107 TraesCS2B01G229000 chr2B_223730299 chr2B 223730299 A A G G 4 missense_variant MODERATE transcript unique_Triplet 223729683 223733631 3949 1 0.0253228665484933 RFvsST 10057 695693088 695683032 no 76.3547809528461 TraesCS2B01G229300 chr2B_224649653 chr2B 224649653 G G A A 4 missense_variant MODERATE transcript non_Triplet 224649253 224650248 996 1 0.100401606425703 RFvsST 10057 695693088 695683032 no 65.0113092568883 TraesCS2B01G229600 chr2B_225259568 chr2B 225259568 C C T T 4 missense_variant MODERATE transcript unique_Triplet 225257340 225262510 5171 2 0.038677238445175 RFvsST 10057 695693088 695683032 no 81.6677326880692 TraesCS2B01G229600 chr2B_225261213 chr2B 225261213 C C T T 4 missense_variant MODERATE transcript unique_Triplet 225257340 225262510 5171 2 0.038677238445175 RFvsST 10057 695693088 695683032 no 81.6677326880692 TraesCS2B01G229800 chr2B_225361951 chr2B 225361951 G G A A 4 missense_variant MODERATE transcript unique_Triplet 225358225 225362457 4233 1 0.023623907394283 RFvsST 10057 695693088 695683032 no 76.2496822701054 TraesCS2B01G230000 chr2B_225585675 chr2B 225585675 T T G G 4 missense_variant MODERATE transcript unique_Triplet 225569246 225588002 18757 4 0.0213253718611718 RFvsST 10057 695693088 695683032 no 264.124385595603 TraesCS2B01G230000 chr2B_225588327 chr2B 225588327 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 225569246 225588002 18757 4 0.0213253718611718 RFvsST 10057 695693088 695683032 no 264.124385595603 TraesCS2B01G230000 chr2B_225573157 chr2B 225573157 T T C C 4 synonymous_variant LOW transcript unique_Triplet 225569246 225588002 18757 4 0.0213253718611718 RFvsST 10057 695693088 695683032 no 264.124385595603 TraesCS2B01G230000 chr2B_225575530 chr2B 225575530 G G A A 4 synonymous_variant LOW transcript unique_Triplet 225569246 225588002 18757 4 0.0213253718611718 RFvsST 10057 695693088 695683032 no 264.124385595603 TraesCS2B01G230200 chr2B_225818691 chr2B 225818691 A A G G 4 synonymous_variant LOW transcript unique_Triplet 225816418 225820110 3693 1 0.0270782561603033 RFvsST 10057 695693088 695683032 no 6.08324647324176 TraesCS2B01G230600 chr2B_226693772 chr2B 226693772 C C A A 4 missense_variant MODERATE transcript unique_Triplet 226688033 226702270 14238 1 0.00702345835089198 RFvsST 10057 695693088 695683032 no 36.5947154242938 TraesCS2B01G230900 chr2B_227078904 chr2B 227078904 A A G G 4 missense_variant MODERATE transcript unique_Triplet 227076518 227081368 4851 2 0.0412286126571841 RFvsST 10057 695693088 695683032 no 540.530086453116 TraesCS2B01G230900 chr2B_227079731 chr2B 227079731 C C A A 4 missense_variant MODERATE transcript unique_Triplet 227076518 227081368 4851 2 0.0412286126571841 RFvsST 10057 695693088 695683032 no 540.530086453116 TraesCS2B01G231100 chr2B_227111232 chr2B 227111232 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 227111678 227114532 2855 1 0.0350262697022767 RFvsST 10057 695693088 695683032 no 91.7051722225537 TraesCS2B01G231600 chr2B_227839944 chr2B 227839944 C C T T 4 missense_variant MODERATE transcript unique_Triplet 227838183 227868479 30297 1 0.00330065683070931 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G231800 chr2B_228980409 chr2B 228980409 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 228980535 228990370 9836 2 0.0203334688897926 RFvsST 10057 695693088 695683032 no 353.071307366727 TraesCS2B01G231800 chr2B_228981060 chr2B 228981060 A A G G 4 synonymous_variant LOW transcript unique_Triplet 228980535 228990370 9836 2 0.0203334688897926 RFvsST 10057 695693088 695683032 no 353.071307366727 TraesCS2B01G231900 chr2B_229443572 chr2B 229443572 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G231900 chr2B_229444492 chr2B 229444492 A A G G 4 missense_variant MODERATE transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G231900 chr2B_229445375 chr2B 229445375 T T C C 4 synonymous_variant LOW transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G231900 chr2B_229443704 chr2B 229443704 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G231900 chr2B_229447667 chr2B 229447667 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G231900 chr2B_229447521 chr2B 229447521 C C T T 4 synonymous_variant LOW transcript unique_Triplet 229443739 229447640 3902 6 0.153767298821117 RFvsST 10057 695693088 695683032 no 208.699554137653 TraesCS2B01G232000 chr2B_229620529 chr2B 229620529 G G T T 4 synonymous_variant LOW transcript unique_Triplet 229619821 229622393 2573 1 0.0388651379712398 RFvsST 10057 695693088 695683032 no 49.5673218830957 TraesCS2B01G232100 chr2B_229789777 chr2B 229789777 G G A A 4 synonymous_variant LOW transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232100 chr2B_229789762 chr2B 229789762 T T G G 4 missense_variant MODERATE transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232100 chr2B_229789615 chr2B 229789615 C C A A 4 missense_variant MODERATE transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232100 chr2B_229789776 chr2B 229789776 T T C C 4 missense_variant MODERATE transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232100 chr2B_229789753 chr2B 229789753 C C G G 4 missense_variant MODERATE transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232100 chr2B_229787441 chr2B 229787441 T T C C 4 synonymous_variant LOW transcript unique_Triplet 229787369 229789821 2453 6 0.244598450876478 RFvsST 10057 695693088 695683032 no 20.9588716403186 TraesCS2B01G232900 chr2B_231234198 chr2B 231234198 G G A A 4 missense_variant MODERATE transcript non_Triplet 231232747 231234995 2249 1 0.0444642063139173 RFvsST 10057 695693088 695683032 no 100.841851068669 TraesCS2B01G233400 chr2B_231971018 chr2B 231971018 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231972789 231973735 947 5 0.527983104540655 RFvsST 10057 695693088 695683032 no 77393.2130323466 TraesCS2B01G233400 chr2B_231970841 chr2B 231970841 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231972789 231973735 947 5 0.527983104540655 RFvsST 10057 695693088 695683032 no 77393.2130323466 TraesCS2B01G233400 chr2B_231969996 chr2B 231969996 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231972789 231973735 947 5 0.527983104540655 RFvsST 10057 695693088 695683032 no 77393.2130323466 TraesCS2B01G233400 chr2B_231970552 chr2B 231970552 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231972789 231973735 947 5 0.527983104540655 RFvsST 10057 695693088 695683032 no 77393.2130323466 TraesCS2B01G233400 chr2B_231971278 chr2B 231971278 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231972789 231973735 947 5 0.527983104540655 RFvsST 10057 695693088 695683032 no 77393.2130323466 TraesCS2B01G233600 chr2B_232272390 chr2B 232272390 T T G G 4 synonymous_variant LOW transcript non_Triplet 232266550 232273234 6685 1 0.0149588631264024 RFvsST 10057 695693088 695683032 no 152.602592524316 TraesCS2B01G233800 chr2B_232348210 chr2B 232348210 G A G A 3 synonymous_variant LOW transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G233800 chr2B_232352076 chr2B 232352076 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G233800 chr2B_232349411 chr2B 232349411 T A T A 3 missense_variant MODERATE transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G233800 chr2B_232348684 chr2B 232348684 C T C T 3 synonymous_variant LOW transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G233800 chr2B_232349041 chr2B 232349041 C T C T 3 synonymous_variant LOW transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G233800 chr2B_232349401 chr2B 232349401 G T G T 3 synonymous_variant LOW transcript unique_Triplet 232347194 232351404 4211 6 0.142483970553313 RFvsST 10057 695693088 695683032 no 158.088029991356 TraesCS2B01G234000 chr2B_232788072 chr2B 232788072 T C T C 3 synonymous_variant LOW transcript unique_Triplet 232779121 232788409 9289 3 0.0322962643987512 RFvsST 10057 695693088 695683032 no 348.770032969776 TraesCS2B01G234000 chr2B_232788096 chr2B 232788096 A C A C 3 synonymous_variant LOW transcript unique_Triplet 232779121 232788409 9289 3 0.0322962643987512 RFvsST 10057 695693088 695683032 no 348.770032969776 TraesCS2B01G234000 chr2B_232788003 chr2B 232788003 G A G A 3 synonymous_variant LOW transcript unique_Triplet 232779121 232788409 9289 3 0.0322962643987512 RFvsST 10057 695693088 695683032 no 348.770032969776 TraesCS2B01G234100 chr2B_232792802 chr2B 232792802 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232798397 chr2B 232798397 G A G A 3 synonymous_variant LOW transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232798145 chr2B 232798145 G C G C 3 missense_variant MODERATE transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232792874 chr2B 232792874 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232797719 chr2B 232797719 A G A G 3 synonymous_variant LOW transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232798468 chr2B 232798468 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232797485 chr2B 232797485 T C T C 3 synonymous_variant LOW transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234100 chr2B_232792859 chr2B 232792859 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 232792577 232798545 5969 8 0.134025799966494 RFvsST 10057 695693088 695683032 no 234.039573691825 TraesCS2B01G234600 chr2B_233275096 chr2B 233275096 G A G A 3 synonymous_variant LOW transcript unique_Triplet 233270054 233275158 5105 1 0.019588638589618 RFvsST 10057 695693088 695683032 no 35.9473246181909 TraesCS2B01G234900 chr2B_234369144 chr2B 234369144 C C A A 4 missense_variant MODERATE transcript unique_Triplet 234368188 234369453 1266 1 0.0789889415481833 RFvsST 10057 695693088 695683032 no 79.8287338610592 TraesCS2B01G235100 chr2B_234636215 chr2B 234636215 C T C T 3 missense_variant MODERATE transcript unique_Triplet 234633012 234640217 7206 3 0.0416319733555371 RFvsST 10057 695693088 695683032 no 1588.60454455466 TraesCS2B01G235100 chr2B_234632434 chr2B 234632434 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 234633012 234640217 7206 3 0.0416319733555371 RFvsST 10057 695693088 695683032 no 1588.60454455466 TraesCS2B01G235100 chr2B_234637651 chr2B 234637651 G G A A 4 missense_variant MODERATE transcript unique_Triplet 234633012 234640217 7206 3 0.0416319733555371 RFvsST 10057 695693088 695683032 no 1588.60454455466 TraesCS2B01G235700 chr2B_236046267 chr2B 236046267 C C T T 4 missense_variant MODERATE transcript unique_Triplet 236045094 236048910 3817 4 0.10479434110558 RFvsST 10057 695693088 695683032 no 151.595842306868 TraesCS2B01G235700 chr2B_236048312 chr2B 236048312 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 236045094 236048910 3817 4 0.10479434110558 RFvsST 10057 695693088 695683032 no 151.595842306868 TraesCS2B01G235700 chr2B_236048328 chr2B 236048328 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 236045094 236048910 3817 4 0.10479434110558 RFvsST 10057 695693088 695683032 no 151.595842306868 TraesCS2B01G235700 chr2B_236048337 chr2B 236048337 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 236045094 236048910 3817 4 0.10479434110558 RFvsST 10057 695693088 695683032 no 151.595842306868 TraesCS2B01G236000 chr2B_236170632 chr2B 236170632 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 236166751 236169350 2600 1 0.0384615384615385 RFvsST 10057 695693088 695683032 no 2.93748494620477 TraesCS2B01G236600 chr2B_236883633 chr2B 236883633 G G A A 4 synonymous_variant LOW transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236883013 chr2B 236883013 A C A C 3 missense_variant MODERATE transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236883342 chr2B 236883342 T C T C 3 synonymous_variant LOW transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236885623 chr2B 236885623 A A G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236883259 chr2B 236883259 T G T G 3 missense_variant MODERATE transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236883424 chr2B 236883424 C T C T 3 missense_variant MODERATE transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236882587 chr2B 236882587 C C T T 4 missense_variant MODERATE transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236882446 chr2B 236882446 G G A A 4 missense_variant MODERATE transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236883426 chr2B 236883426 C T C T 3 synonymous_variant LOW transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236600 chr2B_236882709 chr2B 236882709 G A G A 3 synonymous_variant LOW transcript non_Triplet 236881224 236885666 4443 10 0.225073148773351 RFvsST 10057 695693088 695683032 no 640.977273842883 TraesCS2B01G236800 chr2B_237586645 chr2B 237586645 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 237579401 237586856 7456 1 0.013412017167382 RFvsST 10057 695693088 695683032 no 159.45097750196 TraesCS2B01G237100 chr2B_237752282 chr2B 237752282 T T C C 4 missense_variant MODERATE transcript unique_Triplet 237751437 237759527 8091 1 0.0123594116920035 RFvsST 10057 695693088 695683032 no 13.5376847818709 TraesCS2B01G238400 chr2B_239646558 chr2B 239646558 C A C A 3 missense_variant MODERATE transcript non_Triplet 239646537 239647405 869 1 0.115074798619102 RFvsST 10057 695693088 695683032 no 71.0216962092224 TraesCS2B01G238500 chr2B_239847591 chr2B 239847591 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 239850968 239854383 3416 1 0.0292740046838408 RFvsST 10057 695693088 695683032 no 46.0664427365461 TraesCS2B01G239500 chr2B_243782141 chr2B 243782141 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 243783779 243788949 5171 3 0.0580158576677625 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G239500 chr2B_243782333 chr2B 243782333 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 243783779 243788949 5171 3 0.0580158576677625 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G239500 chr2B_243782065 chr2B 243782065 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 243783779 243788949 5171 3 0.0580158576677625 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G239700 chr2B_243830089 chr2B 243830089 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 243830052 243830871 820 1 0.121951219512195 RFvsST 10057 695693088 695683032 no 14.9781515574923 TraesCS2B01G239900 chr2B_244535839 chr2B 244535839 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 244530027 244534090 4064 3 0.0738188976377953 RFvsST 10057 695693088 695683032 no 46.2761911342637 TraesCS2B01G239900 chr2B_244530124 chr2B 244530124 G G T T 4 missense_variant MODERATE transcript unique_Triplet 244530027 244534090 4064 3 0.0738188976377953 RFvsST 10057 695693088 695683032 no 46.2761911342637 TraesCS2B01G239900 chr2B_244535452 chr2B 244535452 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 244530027 244534090 4064 3 0.0738188976377953 RFvsST 10057 695693088 695683032 no 46.2761911342637 TraesCS2B01G240200 chr2B_244588052 chr2B 244588052 G T G T 3 synonymous_variant LOW transcript non_Triplet 244587409 244590066 2658 3 0.112866817155756 RFvsST 10057 695693088 695683032 no 573.535835914287 TraesCS2B01G240200 chr2B_244587559 chr2B 244587559 C C A A 4 synonymous_variant LOW transcript non_Triplet 244587409 244590066 2658 3 0.112866817155756 RFvsST 10057 695693088 695683032 no 573.535835914287 TraesCS2B01G240200 chr2B_244589434 chr2B 244589434 C T C T 3 missense_variant MODERATE transcript non_Triplet 244587409 244590066 2658 3 0.112866817155756 RFvsST 10057 695693088 695683032 no 573.535835914287 TraesCS2B01G241000 chr2B_245008311 chr2B 245008311 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 245006013 245007023 1011 1 0.0989119683481701 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G241400 chr2B_245317889 chr2B 245317889 C C T T 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 245317181 245320448 3268 1 0.0305997552019584 RFvsST 10057 695693088 695683032 no 105.216227899574 TraesCS2B01G242100 chr2B_246001875 chr2B 246001875 A A C C 4 synonymous_variant LOW transcript non_Triplet 246000758 246004175 3418 5 0.146284376828555 RFvsST 10057 695693088 695683032 no 689.630173003043 TraesCS2B01G242100 chr2B_246004338 chr2B 246004338 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 246000758 246004175 3418 5 0.146284376828555 RFvsST 10057 695693088 695683032 no 689.630173003043 TraesCS2B01G242100 chr2B_246003565 chr2B 246003565 A A C C 4 missense_variant MODERATE transcript non_Triplet 246000758 246004175 3418 5 0.146284376828555 RFvsST 10057 695693088 695683032 no 689.630173003043 TraesCS2B01G242100 chr2B_246002415 chr2B 246002415 G G A A 4 synonymous_variant LOW transcript non_Triplet 246000758 246004175 3418 5 0.146284376828555 RFvsST 10057 695693088 695683032 no 689.630173003043 TraesCS2B01G242100 chr2B_246004223 chr2B 246004223 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 246000758 246004175 3418 5 0.146284376828555 RFvsST 10057 695693088 695683032 no 689.630173003043 TraesCS2B01G243700 chr2B_247935196 chr2B 247935196 G G T T 4 splice_region_variant LOW transcript unique_Triplet 247925546 247935198 9653 1 0.0103594737387341 RFvsST 10057 695693088 695683032 no 94.9345328265991 TraesCS2B01G243900 chr2B_248096117 chr2B 248096117 G G A A 4 missense_variant MODERATE transcript unique_Triplet 248095768 248098909 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 287.073930206419 TraesCS2B01G243900 chr2B_248099081 chr2B 248099081 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 248095768 248098909 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 287.073930206419 TraesCS2B01G243900 chr2B_248096431 chr2B 248096431 T T C C 4 synonymous_variant LOW transcript unique_Triplet 248095768 248098909 3142 3 0.0954805856142584 RFvsST 10057 695693088 695683032 no 287.073930206419 TraesCS2B01G244000 chr2B_248103031 chr2B 248103031 T T C C 4 missense_variant MODERATE transcript unique_Triplet 248099147 248103263 4117 3 0.0728685936361428 RFvsST 10057 695693088 695683032 no 687.179789287591 TraesCS2B01G244000 chr2B_248102916 chr2B 248102916 G G A A 4 synonymous_variant LOW transcript unique_Triplet 248099147 248103263 4117 3 0.0728685936361428 RFvsST 10057 695693088 695683032 no 687.179789287591 TraesCS2B01G244000 chr2B_248102985 chr2B 248102985 C C A A 4 synonymous_variant LOW transcript unique_Triplet 248099147 248103263 4117 3 0.0728685936361428 RFvsST 10057 695693088 695683032 no 687.179789287591 TraesCS2B01G245200 chr2B_249369869 chr2B 249369869 C C G G 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249370434 chr2B 249370434 G G A A 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369474 chr2B 249369474 G G A A 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369557 chr2B 249369557 G G T T 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369930 chr2B 249369930 T T C C 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369737 chr2B 249369737 C C A A 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249374509 chr2B 249374509 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369928 chr2B 249369928 G G C C 4 synonymous_variant LOW transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369808 chr2B 249369808 T T A A 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249370254 chr2B 249370254 G G C C 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369047 chr2B 249369047 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249374614 chr2B 249374614 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369477 chr2B 249369477 C C T T 4 missense_variant MODERATE transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249374695 chr2B 249374695 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249369169 chr2B 249369169 A A G G 4 synonymous_variant LOW transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249370504 chr2B 249370504 G G A A 4 synonymous_variant LOW transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245200 chr2B_249368913 chr2B 249368913 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 249369113 249370653 1541 17 1.10317975340688 RFvsST 10057 695693088 695683032 no 147.767314711842 TraesCS2B01G245700 chr2B_249532873 chr2B 249532873 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 249529183 249530175 993 1 0.100704934541793 RFvsST 10057 695693088 695683032 no 15.2082347250464 TraesCS2B01G245900 chr2B_250066019 chr2B 250066019 A A C C 4 synonymous_variant LOW transcript unique_Triplet 250065630 250067568 1939 1 0.0515729757607014 RFvsST 10057 695693088 695683032 no 147.66878494061 TraesCS2B01G246100 chr2B_250520187 chr2B 250520187 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 250521802 250524411 2610 3 0.114942528735632 RFvsST 10057 695693088 695683032 no 37.6663487744535 TraesCS2B01G246100 chr2B_250517172 chr2B 250517172 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 250521802 250524411 2610 3 0.114942528735632 RFvsST 10057 695693088 695683032 no 37.6663487744535 TraesCS2B01G246100 chr2B_250524626 chr2B 250524626 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 250521802 250524411 2610 3 0.114942528735632 RFvsST 10057 695693088 695683032 no 37.6663487744535 TraesCS2B01G246500 chr2B_250742391 chr2B 250742391 A A G G 4 synonymous_variant LOW transcript unique_Triplet 250735326 250742907 7582 1 0.0131891321551042 RFvsST 10057 695693088 695683032 no 146.259070791428 TraesCS2B01G246900 chr2B_251375616 chr2B 251375616 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 251368622 251375528 6907 2 0.0289561314608368 RFvsST 10057 695693088 695683032 no 147.514850373224 TraesCS2B01G246900 chr2B_251375465 chr2B 251375465 T T G G 4 synonymous_variant LOW transcript unique_Triplet 251368622 251375528 6907 2 0.0289561314608368 RFvsST 10057 695693088 695683032 no 147.514850373224 TraesCS2B01G247300 chr2B_253715542 chr2B 253715542 C C G G 4 missense_variant MODERATE transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G247300 chr2B_253713867 chr2B 253713867 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G247300 chr2B_253715631 chr2B 253715631 G G A A 4 synonymous_variant LOW transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G247300 chr2B_253714613 chr2B 253714613 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G247300 chr2B_253714383 chr2B 253714383 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G247300 chr2B_253714284 chr2B 253714284 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 253715409 253715993 585 6 1.02564102564103 RFvsST 10057 695693088 695683032 no 145.74169813001 TraesCS2B01G248600 chr2B_254876016 chr2B 254876016 G G C C 4 missense_variant MODERATE transcript unique_Triplet 254875241 254878958 3718 1 0.0268961807423346 RFvsST 10057 695693088 695683032 no 504.611030214929 TraesCS2B01G248700 chr2B_255054872 chr2B 255054872 G G T T 4 missense_variant MODERATE transcript unique_Triplet 255051558 255054896 3339 1 0.0299490865528601 RFvsST 10057 695693088 695683032 no 266.181986001422 TraesCS2B01G248900 chr2B_256326575 chr2B 256326575 G G C C 4 missense_variant MODERATE transcript unique_Triplet 256326451 256327311 861 1 0.116144018583043 RFvsST 10057 695693088 695683032 no 603.713664956049 TraesCS2B01G249100 chr2B_256966143 chr2B 256966143 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 256949869 256966124 16256 1 0.00615157480314961 RFvsST 10057 695693088 695683032 no 249.461368417979 TraesCS2B01G249500 chr2B_258046490 chr2B 258046490 A A C C 4 missense_variant MODERATE transcript unique_Triplet 258028677 258046919 18243 1 0.00548155456887573 RFvsST 10057 695693088 695683032 no 24.5070709778824 TraesCS2B01G249700 chr2B_258636262 chr2B 258636262 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 258636279 258643490 7212 4 0.0554631170271769 RFvsST 10057 695693088 695683032 no 221.968961337834 TraesCS2B01G249700 chr2B_258642845 chr2B 258642845 G G A A 4 synonymous_variant LOW transcript unique_Triplet 258636279 258643490 7212 4 0.0554631170271769 RFvsST 10057 695693088 695683032 no 221.968961337834 TraesCS2B01G249700 chr2B_258638242 chr2B 258638242 G G A A 4 missense_variant MODERATE transcript unique_Triplet 258636279 258643490 7212 4 0.0554631170271769 RFvsST 10057 695693088 695683032 no 221.968961337834 TraesCS2B01G249700 chr2B_258636363 chr2B 258636363 C C T T 4 missense_variant MODERATE transcript unique_Triplet 258636279 258643490 7212 4 0.0554631170271769 RFvsST 10057 695693088 695683032 no 221.968961337834 TraesCS2B01G249800 chr2B_258661203 chr2B 258661203 G G A A 4 missense_variant MODERATE transcript unique_Triplet 258652823 258662478 9656 1 0.0103562551781276 RFvsST 10057 695693088 695683032 no 290.088515724392 TraesCS2B01G250100 chr2B_259368269 chr2B 259368269 C C A A 4 synonymous_variant LOW transcript unique_Triplet 259364917 259368296 3380 2 0.0591715976331361 RFvsST 10057 695693088 695683032 no 87.3470087057359 TraesCS2B01G250100 chr2B_259364773 chr2B 259364773 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 259364917 259368296 3380 2 0.0591715976331361 RFvsST 10057 695693088 695683032 no 87.3470087057359 TraesCS2B01G250500 chr2B_260606909 chr2B 260606909 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 260605687 260606897 1211 2 0.165152766308836 RFvsST 10057 695693088 695683032 no 33.9571081417442 TraesCS2B01G250500 chr2B_260605798 chr2B 260605798 T T A A 4 missense_variant MODERATE transcript non_Triplet 260605687 260606897 1211 2 0.165152766308836 RFvsST 10057 695693088 695683032 no 33.9571081417442 TraesCS2B01G250800 chr2B_260755498 chr2B 260755498 G A G A 3 missense_variant MODERATE transcript non_Triplet 260753347 260758976 5630 2 0.0355239786856128 RFvsST 10057 695693088 695683032 no 252.490082893024 TraesCS2B01G250800 chr2B_260757184 chr2B 260757184 A A G G 4 missense_variant MODERATE transcript non_Triplet 260753347 260758976 5630 2 0.0355239786856128 RFvsST 10057 695693088 695683032 no 252.490082893024 TraesCS2B01G251300 chr2B_262900846 chr2B 262900846 G G A A 4 missense_variant MODERATE transcript unique_Triplet 262899711 262906270 6560 1 0.0152439024390244 RFvsST 10057 695693088 695683032 no 154.102896457715 TraesCS2B01G251900 chr2B_265423350 chr2B 265423350 C C T T 4 synonymous_variant LOW transcript non_Triplet 265421488 265435356 13869 2 0.0144206503713317 RFvsST 10057 695693088 695683032 no 1092.87787887535 TraesCS2B01G251900 chr2B_265423500 chr2B 265423500 C C T T 4 synonymous_variant LOW transcript non_Triplet 265421488 265435356 13869 2 0.0144206503713317 RFvsST 10057 695693088 695683032 no 1092.87787887535 TraesCS2B01G252200 chr2B_269361125 chr2B 269361125 T T G G 4 missense_variant MODERATE transcript unique_Triplet 269360484 269375922 15439 2 0.0129542068786839 RFvsST 10057 695693088 695683032 no 261.462417121828 TraesCS2B01G252200 chr2B_269375994 chr2B 269375994 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 269360484 269375922 15439 2 0.0129542068786839 RFvsST 10057 695693088 695683032 no 261.462417121828 TraesCS2B01G252900 chr2B_272756644 chr2B 272756644 G G A A 4 synonymous_variant LOW transcript non_Triplet 272756522 272769946 13425 1 0.0074487895716946 RFvsST 10057 695693088 695683032 no 50.4785104458179 TraesCS2B01G253000 chr2B_272996347 chr2B 272996347 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 272993522 272994442 921 4 0.434310532030402 RFvsST 10057 695693088 695683032 no 54.2184620988025 TraesCS2B01G253000 chr2B_272991649 chr2B 272991649 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 272993522 272994442 921 4 0.434310532030402 RFvsST 10057 695693088 695683032 no 54.2184620988025 TraesCS2B01G253000 chr2B_272993419 chr2B 272993419 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 272993522 272994442 921 4 0.434310532030402 RFvsST 10057 695693088 695683032 no 54.2184620988025 TraesCS2B01G253000 chr2B_272996046 chr2B 272996046 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 272993522 272994442 921 4 0.434310532030402 RFvsST 10057 695693088 695683032 no 54.2184620988025 TraesCS2B01G253200 chr2B_273738098 chr2B 273738098 C C T T 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 273735752 273738371 2620 1 0.0381679389312977 RFvsST 10057 695693088 695683032 no 400.332161159323 TraesCS2B01G253500 chr2B_277305617 chr2B 277305617 C C T T 4 synonymous_variant LOW transcript non_Triplet 277302264 277319145 16882 2 0.011846937566639 RFvsST 10057 695693088 695683032 no 68.8364534834262 TraesCS2B01G253500 chr2B_277318740 chr2B 277318740 C C G G 4 missense_variant MODERATE transcript non_Triplet 277302264 277319145 16882 2 0.011846937566639 RFvsST 10057 695693088 695683032 no 68.8364534834262 TraesCS2B01G253900 chr2B_280496335 chr2B 280496335 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 280483083 280496140 13058 1 0.00765814060346148 RFvsST 10057 695693088 695683032 no 130.368183460214 TraesCS2B01G254000 chr2B_281876157 chr2B 281876157 A A G G 4 missense_variant MODERATE transcript unique_Triplet 281872387 281878760 6374 1 0.0156887354879197 RFvsST 10057 695693088 695683032 no 744.379088176303 TraesCS2B01G254800 chr2B_286508205 chr2B 286508205 C G C G 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 286507949 286509008 1060 4 0.377358490566038 RFvsST 10057 695693088 695683032 no 90.8392102581751 TraesCS2B01G254800 chr2B_286508410 chr2B 286508410 T C T C 3 synonymous_variant LOW transcript non_Triplet 286507949 286509008 1060 4 0.377358490566038 RFvsST 10057 695693088 695683032 no 90.8392102581751 TraesCS2B01G254800 chr2B_286508550 chr2B 286508550 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 286507949 286509008 1060 4 0.377358490566038 RFvsST 10057 695693088 695683032 no 90.8392102581751 TraesCS2B01G254800 chr2B_286508395 chr2B 286508395 T C T C 3 synonymous_variant LOW transcript non_Triplet 286507949 286509008 1060 4 0.377358490566038 RFvsST 10057 695693088 695683032 no 90.8392102581751 TraesCS2B01G255300 chr2B_291619627 chr2B 291619627 G G C C 4 missense_variant MODERATE transcript non_Triplet 291584148 291619655 35508 1 0.0028162667567872 RFvsST 10057 695693088 695683032 no 72.9973238202764 TraesCS2B01G256000 chr2B_296066943 chr2B 296066943 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 296067086 296069404 2319 1 0.043122035360069 RFvsST 10057 695693088 695683032 no 11.1660005212066 TraesCS2B01G256300 chr2B_298164951 chr2B 298164951 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298163066 chr2B 298163066 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298163283 chr2B 298163283 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298153238 chr2B 298153238 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298156428 chr2B 298156428 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298154074 chr2B 298154074 A A T T 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298166604 chr2B 298166604 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298158132 chr2B 298158132 A A C C 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298154876 chr2B 298154876 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298153062 chr2B 298153062 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298152846 chr2B 298152846 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298166934 chr2B 298166934 T T C C 4 synonymous_variant LOW transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298154588 chr2B 298154588 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298161218 chr2B 298161218 G G T T 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298163859 chr2B 298163859 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298154186 chr2B 298154186 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256300 chr2B_298152520 chr2B 298152520 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 298151363 298167699 16337 17 0.104058272632674 RFvsST 10057 695693088 695683032 no 1511.67040913703 TraesCS2B01G256500 chr2B_298279168 chr2B 298279168 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 298276994 298277443 450 1 0.222222222222222 RFvsST 10057 695693088 695683032 no 14.6877555668147 TraesCS2B01G256600 chr2B_298326054 chr2B 298326054 A A G G 4 missense_variant MODERATE transcript non_Triplet 298325228 298327219 1992 1 0.0502008032128514 RFvsST 10057 695693088 695683032 no 123.612079861526 TraesCS2B01G256700 chr2B_298572147 chr2B 298572147 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 298572314 298582958 10645 2 0.0187881634570221 RFvsST 10057 695693088 695683032 no 125.749472848999 TraesCS2B01G256700 chr2B_298572123 chr2B 298572123 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 298572314 298582958 10645 2 0.0187881634570221 RFvsST 10057 695693088 695683032 no 125.749472848999 TraesCS2B01G256800 chr2B_300260579 chr2B 300260579 T T C C 4 missense_variant MODERATE transcript non_Triplet 300253952 300261762 7811 1 0.0128024580719498 RFvsST 10057 695693088 695683032 no 39.5909187545886 TraesCS2B01G257000 chr2B_302080570 chr2B 302080570 G G C C 4 missense_variant MODERATE transcript non_Triplet 302039756 302084547 44792 1 0.00223254152527237 RFvsST 10057 695693088 695683032 no 25.1011226658926 TraesCS2B01G257100 chr2B_303096535 chr2B 303096535 T T C C 4 missense_variant MODERATE transcript non_Triplet 303094335 303100178 5844 1 0.0171115674195756 RFvsST 10057 695693088 695683032 no 144.059154049738 TraesCS2B01G257200 chr2B_305328420 chr2B 305328420 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 305313158 305328942 15785 2 0.0126702565726956 RFvsST 10057 695693088 695683032 no 499.513186492936 TraesCS2B01G257200 chr2B_305326797 chr2B 305326797 T T A A 4 missense_variant MODERATE transcript non_Triplet 305313158 305328942 15785 2 0.0126702565726956 RFvsST 10057 695693088 695683032 no 499.513186492936 TraesCS2B01G257600 chr2B_309487442 chr2B 309487442 G G A A 4 synonymous_variant LOW transcript non_Triplet 309484986 309500080 15095 4 0.0264988406757204 RFvsST 10057 695693088 695683032 no 832.803657094688 TraesCS2B01G257600 chr2B_309485853 chr2B 309485853 C C G G 4 missense_variant MODERATE transcript non_Triplet 309484986 309500080 15095 4 0.0264988406757204 RFvsST 10057 695693088 695683032 no 832.803657094688 TraesCS2B01G257600 chr2B_309487857 chr2B 309487857 G G A A 4 missense_variant MODERATE transcript non_Triplet 309484986 309500080 15095 4 0.0264988406757204 RFvsST 10057 695693088 695683032 no 832.803657094688 TraesCS2B01G257600 chr2B_309486918 chr2B 309486918 G G A A 4 missense_variant MODERATE transcript non_Triplet 309484986 309500080 15095 4 0.0264988406757204 RFvsST 10057 695693088 695683032 no 832.803657094688 TraesCS2B01G257700 chr2B_310498032 chr2B 310498032 A A G G 4 intron_variant MODIFIER transcript non_Triplet 310496029 310501367 5339 2 0.0374601985390523 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G257700 chr2B_310497563 chr2B 310497563 A A C C 4 intron_variant MODIFIER transcript non_Triplet 310496029 310501367 5339 2 0.0374601985390523 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G257800 chr2B_310929007 chr2B 310929007 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 310929095 310944344 15250 4 0.0262295081967213 RFvsST 10057 695693088 695683032 no 484.381798285431 TraesCS2B01G257800 chr2B_310927706 chr2B 310927706 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 310929095 310944344 15250 4 0.0262295081967213 RFvsST 10057 695693088 695683032 no 484.381798285431 TraesCS2B01G257800 chr2B_310930069 chr2B 310930069 A A G G 4 missense_variant MODERATE transcript non_Triplet 310929095 310944344 15250 4 0.0262295081967213 RFvsST 10057 695693088 695683032 no 484.381798285431 TraesCS2B01G257800 chr2B_310929339 chr2B 310929339 T T C C 4 intron_variant MODIFIER transcript non_Triplet 310929095 310944344 15250 4 0.0262295081967213 RFvsST 10057 695693088 695683032 no 484.381798285431 TraesCS2B01G258000 chr2B_311669989 chr2B 311669989 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 311674302 311675284 983 1 0.101729399796541 RFvsST 10057 695693088 695683032 no 91.3505496848057 TraesCS2B01G258400 chr2B_314788195 chr2B 314788195 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 314770790 314787929 17140 4 0.0233372228704784 RFvsST 10057 695693088 695683032 no 455.234093604898 TraesCS2B01G258400 chr2B_314785062 chr2B 314785062 G G T T 4 synonymous_variant LOW transcript non_Triplet 314770790 314787929 17140 4 0.0233372228704784 RFvsST 10057 695693088 695683032 no 455.234093604898 TraesCS2B01G258400 chr2B_314788175 chr2B 314788175 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 314770790 314787929 17140 4 0.0233372228704784 RFvsST 10057 695693088 695683032 no 455.234093604898 TraesCS2B01G258400 chr2B_314788196 chr2B 314788196 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 314770790 314787929 17140 4 0.0233372228704784 RFvsST 10057 695693088 695683032 no 455.234093604898 TraesCS2B01G259100 chr2B_320739102 chr2B 320739102 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 320739126 320746024 6899 1 0.014494854326714 RFvsST 10057 695693088 695683032 no 2389.08672793871 TraesCS2B01G259300 chr2B_321702551 chr2B 321702551 T T C C 4 missense_variant MODERATE transcript non_Triplet 321690170 321712662 22493 2 0.00889165518161206 RFvsST 10057 695693088 695683032 no 38.5982273046717 TraesCS2B01G259300 chr2B_321690406 chr2B 321690406 T T C C 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 321690170 321712662 22493 2 0.00889165518161206 RFvsST 10057 695693088 695683032 no 38.5982273046717 TraesCS2B01G259500 chr2B_323100327 chr2B 323100327 C C T T 4 missense_variant MODERATE transcript unique_Triplet 323060844 323101830 40987 1 0.00243979798472686 RFvsST 10057 695693088 695683032 no 98.7965237285671 TraesCS2B01G259800 chr2B_325628585 chr2B 325628585 T T C C 4 synonymous_variant LOW transcript non_Triplet 325628331 325628843 513 3 0.584795321637427 RFvsST 10057 695693088 695683032 no 93.9364259607596 TraesCS2B01G259800 chr2B_325628300 chr2B 325628300 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 325628331 325628843 513 3 0.584795321637427 RFvsST 10057 695693088 695683032 no 93.9364259607596 TraesCS2B01G259800 chr2B_325628607 chr2B 325628607 G G A A 4 missense_variant MODERATE transcript non_Triplet 325628331 325628843 513 3 0.584795321637427 RFvsST 10057 695693088 695683032 no 93.9364259607596 TraesCS2B01G260100 chr2B_325846860 chr2B 325846860 T T C C 4 missense_variant MODERATE transcript non_Triplet 325844459 325849806 5348 1 0.018698578908003 RFvsST 10057 695693088 695683032 no 156.700650370097 TraesCS2B01G260300 chr2B_326676021 chr2B 326676021 A A G G 4 missense_variant MODERATE transcript unique_Triplet 326675543 326681124 5582 1 0.0179147259046937 RFvsST 10057 695693088 695683032 no 202.729731070601 TraesCS2B01G260500 chr2B_329138232 chr2B 329138232 C C G G 4 synonymous_variant LOW transcript non_Triplet 329138157 329138524 368 1 0.271739130434783 RFvsST 10057 695693088 695683032 no 91.9330638859038 TraesCS2B01G260600 chr2B_329474728 chr2B 329474728 C C T T 4 missense_variant MODERATE transcript non_Triplet 329472595 329486827 14233 2 0.0140518513314129 RFvsST 10057 695693088 695683032 no 94.8209889251561 TraesCS2B01G260600 chr2B_329474926 chr2B 329474926 A A G G 4 synonymous_variant LOW transcript non_Triplet 329472595 329486827 14233 2 0.0140518513314129 RFvsST 10057 695693088 695683032 no 94.8209889251561 TraesCS2B01G261000 chr2B_331228953 chr2B 331228953 A A G G 4 synonymous_variant LOW transcript non_Triplet 331228711 331231839 3129 1 0.0319590923617769 RFvsST 10057 695693088 695683032 no 2789.84616526714 TraesCS2B01G261200 chr2B_332333211 chr2B 332333211 C C T T 4 intron_variant MODIFIER transcript non_Triplet 332331633 332335685 4053 1 0.0246730816679003 RFvsST 10057 695693088 695683032 no 782.091916841039 TraesCS2B01G261300 chr2B_333029242 chr2B 333029242 A A C C 4 missense_variant MODERATE transcript non_Triplet 333029229 333059293 30065 2 0.00665225345085648 RFvsST 10057 695693088 695683032 no 48.5674911267744 TraesCS2B01G261300 chr2B_333029477 chr2B 333029477 G G A A 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 333029229 333059293 30065 2 0.00665225345085648 RFvsST 10057 695693088 695683032 no 48.5674911267744 TraesCS2B01G261400 chr2B_333863142 chr2B 333863142 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 333862494 333868582 6089 5 0.0821152898669732 RFvsST 10057 695693088 695683032 no 772.462555266683 TraesCS2B01G261400 chr2B_333862643 chr2B 333862643 A A C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 333862494 333868582 6089 5 0.0821152898669732 RFvsST 10057 695693088 695683032 no 772.462555266683 TraesCS2B01G261400 chr2B_333868322 chr2B 333868322 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 333862494 333868582 6089 5 0.0821152898669732 RFvsST 10057 695693088 695683032 no 772.462555266683 TraesCS2B01G261400 chr2B_333868207 chr2B 333868207 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 333862494 333868582 6089 5 0.0821152898669732 RFvsST 10057 695693088 695683032 no 772.462555266683 TraesCS2B01G261400 chr2B_333867158 chr2B 333867158 G G C C 4 synonymous_variant LOW transcript non_Triplet 333862494 333868582 6089 5 0.0821152898669732 RFvsST 10057 695693088 695683032 no 772.462555266683 TraesCS2B01G261500 chr2B_335526781 chr2B 335526781 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 335493700 335526467 32768 1 0.0030517578125 RFvsST 10057 695693088 695683032 no 148.87859286585 TraesCS2B01G261700 chr2B_337072855 chr2B 337072855 A A G G 4 missense_variant MODERATE transcript non_Triplet 337072146 337086131 13986 2 0.0143000143000143 RFvsST 10057 695693088 695683032 no 300.814545338878 TraesCS2B01G261700 chr2B_337071931 chr2B 337071931 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 337072146 337086131 13986 2 0.0143000143000143 RFvsST 10057 695693088 695683032 no 300.814545338878 TraesCS2B01G261800 chr2B_338730295 chr2B 338730295 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 338728021 338728474 454 1 0.220264317180617 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G262100 chr2B_339108693 chr2B 339108693 G G A A 4 missense_variant MODERATE transcript non_Triplet 339108656 339116757 8102 2 0.0246852628980499 RFvsST 10057 695693088 695683032 no 29.9156474542075 TraesCS2B01G262100 chr2B_339116975 chr2B 339116975 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 339108656 339116757 8102 2 0.0246852628980499 RFvsST 10057 695693088 695683032 no 29.9156474542075 TraesCS2B01G262200 chr2B_340590629 chr2B 340590629 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 340590524 340594515 3992 2 0.0501002004008016 RFvsST 10057 695693088 695683032 no 309.923410868498 TraesCS2B01G262200 chr2B_340593546 chr2B 340593546 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 340590524 340594515 3992 2 0.0501002004008016 RFvsST 10057 695693088 695683032 no 309.923410868498 TraesCS2B01G263000 chr2B_350307982 chr2B 350307982 G G C C 4 synonymous_variant LOW transcript non_Triplet 350299039 350310331 11293 1 0.00885504294695829 RFvsST 10057 695693088 695683032 no 185.021142306356 TraesCS2B01G263100 chr2B_352281971 chr2B 352281971 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 352280539 352281711 1173 1 0.0852514919011083 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G263300 chr2B_353584522 chr2B 353584522 T T C C 4 synonymous_variant LOW transcript unique_Triplet 353564559 353586560 22002 2 0.00909008271975275 RFvsST 10057 695693088 695683032 no 5.39953655776855 TraesCS2B01G263300 chr2B_353586608 chr2B 353586608 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 353564559 353586560 22002 2 0.00909008271975275 RFvsST 10057 695693088 695683032 no 5.39953655776855 TraesCS2B01G263500 chr2B_354081870 chr2B 354081870 A A G G 4 synonymous_variant LOW transcript unique_Triplet 354073127 354084546 11420 2 0.0175131348511384 RFvsST 10057 695693088 695683032 no 49.4660626722237 TraesCS2B01G263500 chr2B_354076898 chr2B 354076898 C C T T 4 synonymous_variant LOW transcript unique_Triplet 354073127 354084546 11420 2 0.0175131348511384 RFvsST 10057 695693088 695683032 no 49.4660626722237 TraesCS2B01G263800 chr2B_355886036 chr2B 355886036 T T C C 4 synonymous_variant LOW transcript non_Triplet 355885470 355886282 813 1 0.1230012300123 RFvsST 10057 695693088 695683032 no 20.617385258585 TraesCS2B01G266400 chr2B_358774069 chr2B 358774069 T T C C 4 synonymous_variant LOW transcript non_Triplet 358759807 358774078 14272 1 0.0070067264573991 RFvsST 10057 695693088 695683032 no 33.7018589150914 TraesCS2B01G266500 chr2B_358774617 chr2B 358774617 T T G G 4 missense_variant MODERATE transcript non_Triplet 358774526 358774762 237 1 0.421940928270042 RFvsST 10057 695693088 695683032 no 21.1950675886544 TraesCS2B01G266600 chr2B_359130878 chr2B 359130878 C C T T 4 synonymous_variant LOW transcript non_Triplet 359130518 359134569 4052 3 0.0740375123395854 RFvsST 10057 695693088 695683032 no 109.12057924054 TraesCS2B01G266600 chr2B_359133227 chr2B 359133227 C C A A 4 missense_variant MODERATE transcript non_Triplet 359130518 359134569 4052 3 0.0740375123395854 RFvsST 10057 695693088 695683032 no 109.12057924054 TraesCS2B01G266600 chr2B_359132388 chr2B 359132388 G G A A 4 missense_variant MODERATE transcript non_Triplet 359130518 359134569 4052 3 0.0740375123395854 RFvsST 10057 695693088 695683032 no 109.12057924054 TraesCS2B01G267000 chr2B_359613028 chr2B 359613028 C C G G 4 synonymous_variant LOW transcript unique_Triplet 359612789 359616877 4089 1 0.0244558571777941 RFvsST 10057 695693088 695683032 no 239.625338221836 TraesCS2B01G267200 chr2B_359860518 chr2B 359860518 T T G G 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267200 chr2B_359857977 chr2B 359857977 T T C C 4 missense_variant MODERATE transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267200 chr2B_359863042 chr2B 359863042 A A G G 4 missense_variant MODERATE transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267200 chr2B_359868598 chr2B 359868598 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267200 chr2B_359863177 chr2B 359863177 A A T T 4 missense_variant MODERATE transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267200 chr2B_359871281 chr2B 359871281 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 359857941 359867168 9228 6 0.0650195058517555 RFvsST 10057 695693088 695683032 no 698.284191153237 TraesCS2B01G267700 chr2B_360971960 chr2B 360971960 C C T T 4 missense_variant MODERATE transcript unique_Triplet 360971784 360979940 8157 3 0.0367782272894447 RFvsST 10057 695693088 695683032 no 158.241886527655 TraesCS2B01G267700 chr2B_360971508 chr2B 360971508 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 360971784 360979940 8157 3 0.0367782272894447 RFvsST 10057 695693088 695683032 no 158.241886527655 TraesCS2B01G267700 chr2B_360972615 chr2B 360972615 C C A A 4 intron_variant MODIFIER transcript unique_Triplet 360971784 360979940 8157 3 0.0367782272894447 RFvsST 10057 695693088 695683032 no 158.241886527655 TraesCS2B01G267800 chr2B_360980944 chr2B 360980944 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 360981446 360982643 1198 2 0.1669449081803 RFvsST 10057 695693088 695683032 no 158.960023786986 TraesCS2B01G267800 chr2B_360981608 chr2B 360981608 A A G G 4 missense_variant MODERATE transcript unique_Triplet 360981446 360982643 1198 2 0.1669449081803 RFvsST 10057 695693088 695683032 no 158.960023786986 TraesCS2B01G269200 chr2B_364731549 chr2B 364731549 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 364729890 364734213 4324 1 0.0231267345050879 RFvsST 10057 695693088 695683032 no 111.957384105518 TraesCS2B01G269300 chr2B_364947919 chr2B 364947919 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 364948087 364949733 1647 1 0.0607164541590771 RFvsST 10057 695693088 695683032 no 1300.21240611046 TraesCS2B01G269400 chr2B_366021399 chr2B 366021399 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 366014508 366021331 6824 1 0.0146541617819461 RFvsST 10057 695693088 695683032 no 32.8428343056723 TraesCS2B01G269700 chr2B_367708630 chr2B 367708630 T A T A 3 missense_variant MODERATE transcript non_Triplet 367657356 367709290 51935 1 0.00192548377779917 RFvsST 10057 695693088 695683032 no 611.967881206513 TraesCS2B01G270100 chr2B_368336469 chr2B 368336469 C C T T 4 missense_variant MODERATE transcript non_Triplet 368336465 368339504 3040 1 0.0328947368421053 RFvsST 10057 695693088 695683032 no 226.034538520437 TraesCS2B01G270500 chr2B_368973752 chr2B 368973752 T T C C 4 missense_variant MODERATE transcript unique_Triplet 368972683 368980868 8186 2 0.0244319569997557 RFvsST 10057 695693088 695683032 no 102.751274915041 TraesCS2B01G270500 chr2B_368973741 chr2B 368973741 C C T T 4 synonymous_variant LOW transcript unique_Triplet 368972683 368980868 8186 2 0.0244319569997557 RFvsST 10057 695693088 695683032 no 102.751274915041 TraesCS2B01G270600 chr2B_369477112 chr2B 369477112 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 369476107 369498937 22831 2 0.0087600192720424 RFvsST 10057 695693088 695683032 no 275.80160466615 TraesCS2B01G270600 chr2B_369477818 chr2B 369477818 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 369476107 369498937 22831 2 0.0087600192720424 RFvsST 10057 695693088 695683032 no 275.80160466615 TraesCS2B01G270700 chr2B_369501359 chr2B 369501359 G G T T 4 missense_variant MODERATE transcript unique_Triplet 369500380 369501621 1242 1 0.0805152979066023 RFvsST 10057 695693088 695683032 no 369.891293245526 TraesCS2B01G271200 chr2B_371161907 chr2B 371161907 A A G G 4 synonymous_variant LOW transcript unique_Triplet 371161561 371164977 3417 4 0.117061750073164 RFvsST 10057 695693088 695683032 no 2.87200610407634 TraesCS2B01G271200 chr2B_371157832 chr2B 371157832 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 371161561 371164977 3417 4 0.117061750073164 RFvsST 10057 695693088 695683032 no 2.87200610407634 TraesCS2B01G271200 chr2B_371157134 chr2B 371157134 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 371161561 371164977 3417 4 0.117061750073164 RFvsST 10057 695693088 695683032 no 2.87200610407634 TraesCS2B01G271200 chr2B_371163277 chr2B 371163277 C C T T 4 missense_variant MODERATE transcript unique_Triplet 371161561 371164977 3417 4 0.117061750073164 RFvsST 10057 695693088 695683032 no 2.87200610407634 TraesCS2B01G271300 chr2B_371166604 chr2B 371166604 G G A A 4 missense_variant MODERATE transcript unique_Triplet 371165291 371167492 2202 1 0.0454132606721163 RFvsST 10057 695693088 695683032 no 159.110784114758 TraesCS2B01G271500 chr2B_371561543 chr2B 371561543 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 371562098 371563195 1098 3 0.273224043715847 RFvsST 10057 695693088 695683032 no 972.477170066668 TraesCS2B01G271500 chr2B_371561799 chr2B 371561799 T T A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 371562098 371563195 1098 3 0.273224043715847 RFvsST 10057 695693088 695683032 no 972.477170066668 TraesCS2B01G271500 chr2B_371560539 chr2B 371560539 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 371562098 371563195 1098 3 0.273224043715847 RFvsST 10057 695693088 695683032 no 972.477170066668 TraesCS2B01G271800 chr2B_373311585 chr2B 373311585 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 373308436 373314465 6030 1 0.0165837479270315 RFvsST 10057 695693088 695683032 no 387.353329058134 TraesCS2B01G273000 chr2B_374237781 chr2B 374237781 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 374239120 374239935 816 4 0.490196078431373 RFvsST 10057 695693088 695683032 no 18.1334324388072 TraesCS2B01G273000 chr2B_374241657 chr2B 374241657 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 374239120 374239935 816 4 0.490196078431373 RFvsST 10057 695693088 695683032 no 18.1334324388072 TraesCS2B01G273000 chr2B_374236592 chr2B 374236592 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 374239120 374239935 816 4 0.490196078431373 RFvsST 10057 695693088 695683032 no 18.1334324388072 TraesCS2B01G273000 chr2B_374241623 chr2B 374241623 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 374239120 374239935 816 4 0.490196078431373 RFvsST 10057 695693088 695683032 no 18.1334324388072 TraesCS2B01G273300 chr2B_374682419 chr2B 374682419 C C T T 4 synonymous_variant LOW transcript unique_Triplet 374677681 374682446 4766 1 0.0209819555182543 RFvsST 10057 695693088 695683032 no 95.1836066067314 TraesCS2B01G273500 chr2B_374803060 chr2B 374803060 C C T T 4 missense_variant MODERATE transcript unique_Triplet 374801457 374803088 1632 2 0.122549019607843 RFvsST 10057 695693088 695683032 no 223.156714611799 TraesCS2B01G273500 chr2B_374799268 chr2B 374799268 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 374801457 374803088 1632 2 0.122549019607843 RFvsST 10057 695693088 695683032 no 223.156714611799 TraesCS2B01G274100 chr2B_376110917 chr2B 376110917 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 376115879 376120149 4271 3 0.0702411613205338 RFvsST 10057 695693088 695683032 no 20.7142529326749 TraesCS2B01G274100 chr2B_376114648 chr2B 376114648 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 376115879 376120149 4271 3 0.0702411613205338 RFvsST 10057 695693088 695683032 no 20.7142529326749 TraesCS2B01G274100 chr2B_376111811 chr2B 376111811 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 376115879 376120149 4271 3 0.0702411613205338 RFvsST 10057 695693088 695683032 no 20.7142529326749 TraesCS2B01G274400 chr2B_377527190 chr2B 377527190 T T C C 4 synonymous_variant LOW transcript unique_Triplet 377526929 377532644 5716 3 0.0524842547235829 RFvsST 10057 695693088 695683032 no 523.436177860166 TraesCS2B01G274400 chr2B_377528009 chr2B 377528009 A A G G 4 synonymous_variant LOW transcript unique_Triplet 377526929 377532644 5716 3 0.0524842547235829 RFvsST 10057 695693088 695683032 no 523.436177860166 TraesCS2B01G274400 chr2B_377528170 chr2B 377528170 T T A A 4 missense_variant MODERATE transcript unique_Triplet 377526929 377532644 5716 3 0.0524842547235829 RFvsST 10057 695693088 695683032 no 523.436177860166 TraesCS2B01G275000 chr2B_379095211 chr2B 379095211 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 379095305 379104481 9177 1 0.01089680723548 RFvsST 10057 695693088 695683032 no 108.727386678183 TraesCS2B01G275500 chr2B_380259020 chr2B 380259020 A A G G 4 synonymous_variant LOW transcript unique_Triplet 380259003 380259428 426 2 0.469483568075117 RFvsST 10057 695693088 695683032 no 110.130069298903 TraesCS2B01G275500 chr2B_380259087 chr2B 380259087 A A G G 4 missense_variant MODERATE transcript unique_Triplet 380259003 380259428 426 2 0.469483568075117 RFvsST 10057 695693088 695683032 no 110.130069298903 TraesCS2B01G275700 chr2B_380497129 chr2B 380497129 A A G G 4 synonymous_variant LOW transcript unique_Triplet 380495917 380507191 11275 4 0.0354767184035477 RFvsST 10057 695693088 695683032 no 145.097462661676 TraesCS2B01G275700 chr2B_380506442 chr2B 380506442 T T C C 4 synonymous_variant LOW transcript unique_Triplet 380495917 380507191 11275 4 0.0354767184035477 RFvsST 10057 695693088 695683032 no 145.097462661676 TraesCS2B01G275700 chr2B_380507146 chr2B 380507146 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 380495917 380507191 11275 4 0.0354767184035477 RFvsST 10057 695693088 695683032 no 145.097462661676 TraesCS2B01G275700 chr2B_380505865 chr2B 380505865 C C T T 4 missense_variant MODERATE transcript unique_Triplet 380495917 380507191 11275 4 0.0354767184035477 RFvsST 10057 695693088 695683032 no 145.097462661676 TraesCS2B01G276300 chr2B_381916565 chr2B 381916565 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 381916392 381919126 2735 1 0.036563071297989 RFvsST 10057 695693088 695683032 no 20.7868439887712 TraesCS2B01G277300 chr2B_383057510 chr2B 383057510 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 383056722 383058413 1692 2 0.118203309692671 RFvsST 10057 695693088 695683032 no 319.832294836425 TraesCS2B01G277300 chr2B_383057632 chr2B 383057632 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 383056722 383058413 1692 2 0.118203309692671 RFvsST 10057 695693088 695683032 no 319.832294836425 TraesCS2B01G277600 chr2B_383364346 chr2B 383364346 G G A A 4 missense_variant MODERATE transcript unique_Triplet 383363724 383371052 7329 2 0.0272888525037522 RFvsST 10057 695693088 695683032 no 134.757696267112 TraesCS2B01G277600 chr2B_383364530 chr2B 383364530 T T C C 4 missense_variant MODERATE transcript unique_Triplet 383363724 383371052 7329 2 0.0272888525037522 RFvsST 10057 695693088 695683032 no 134.757696267112 TraesCS2B01G278000 chr2B_383926258 chr2B 383926258 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 383926391 383928474 2084 4 0.191938579654511 RFvsST 10057 695693088 695683032 no 3.14981728501274 TraesCS2B01G278000 chr2B_383928635 chr2B 383928635 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 383926391 383928474 2084 4 0.191938579654511 RFvsST 10057 695693088 695683032 no 3.14981728501274 TraesCS2B01G278000 chr2B_383928605 chr2B 383928605 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 383926391 383928474 2084 4 0.191938579654511 RFvsST 10057 695693088 695683032 no 3.14981728501274 TraesCS2B01G278000 chr2B_383926311 chr2B 383926311 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 383926391 383928474 2084 4 0.191938579654511 RFvsST 10057 695693088 695683032 no 3.14981728501274 TraesCS2B01G278600 chr2B_384399471 chr2B 384399471 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 384400323 384400747 425 2 0.470588235294118 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G278600 chr2B_384398389 chr2B 384398389 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 384400323 384400747 425 2 0.470588235294118 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G278800 chr2B_384749502 chr2B 384749502 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 384748173 384749791 1619 2 0.123533045089561 RFvsST 10057 695693088 695683032 no 1449.62129505607 TraesCS2B01G278800 chr2B_384749512 chr2B 384749512 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 384748173 384749791 1619 2 0.123533045089561 RFvsST 10057 695693088 695683032 no 1449.62129505607 TraesCS2B01G279000 chr2B_385201729 chr2B 385201729 T T C C 4 synonymous_variant LOW transcript unique_Triplet 385191180 385201852 10673 4 0.03747774758737 RFvsST 10057 695693088 695683032 no 451.964702436117 TraesCS2B01G279000 chr2B_385191267 chr2B 385191267 C T C T 3 missense_variant MODERATE transcript unique_Triplet 385191180 385201852 10673 4 0.03747774758737 RFvsST 10057 695693088 695683032 no 451.964702436117 TraesCS2B01G279000 chr2B_385199735 chr2B 385199735 T T C C 4 missense_variant MODERATE transcript unique_Triplet 385191180 385201852 10673 4 0.03747774758737 RFvsST 10057 695693088 695683032 no 451.964702436117 TraesCS2B01G279000 chr2B_385199223 chr2B 385199223 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 385191180 385201852 10673 4 0.03747774758737 RFvsST 10057 695693088 695683032 no 451.964702436117 TraesCS2B01G279400 chr2B_385563875 chr2B 385563875 A A G G 4 synonymous_variant LOW transcript unique_Triplet 385563690 385568255 4566 2 0.0438020148926851 RFvsST 10057 695693088 695683032 no 227.407863946522 TraesCS2B01G279400 chr2B_385564889 chr2B 385564889 T T C C 4 synonymous_variant LOW transcript unique_Triplet 385563690 385568255 4566 2 0.0438020148926851 RFvsST 10057 695693088 695683032 no 227.407863946522 TraesCS2B01G280200 chr2B_386313796 chr2B 386313796 A A G G 4 missense_variant MODERATE transcript unique_Triplet 386313348 386316472 3125 2 0.064 RFvsST 10057 695693088 695683032 no 347.027865127012 TraesCS2B01G280200 chr2B_386315930 chr2B 386315930 A A G G 4 synonymous_variant LOW transcript unique_Triplet 386313348 386316472 3125 2 0.064 RFvsST 10057 695693088 695683032 no 347.027865127012 TraesCS2B01G280600 chr2B_387105464 chr2B 387105464 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 387103597 387108560 4964 1 0.0201450443190975 RFvsST 10057 695693088 695683032 no 11015.9622544693 TraesCS2B01G281600 chr2B_389472492 chr2B 389472492 T T C C 4 missense_variant MODERATE transcript unique_Triplet 389457580 389472664 15085 3 0.0198873052701359 RFvsST 10057 695693088 695683032 no 208.765451586969 TraesCS2B01G281600 chr2B_389472441 chr2B 389472441 C C T T 4 missense_variant MODERATE transcript unique_Triplet 389457580 389472664 15085 3 0.0198873052701359 RFvsST 10057 695693088 695683032 no 208.765451586969 TraesCS2B01G281600 chr2B_389471745 chr2B 389471745 A A G G 4 missense_variant MODERATE transcript unique_Triplet 389457580 389472664 15085 3 0.0198873052701359 RFvsST 10057 695693088 695683032 no 208.765451586969 TraesCS2B01G281800 chr2B_390116879 chr2B 390116879 T T G G 4 missense_variant MODERATE transcript unique_Triplet 390116092 390118121 2030 1 0.0492610837438424 RFvsST 10057 695693088 695683032 no 236.522473194664 TraesCS2B01G282300 chr2B_390808049 chr2B 390808049 G G A A 4 missense_variant MODERATE transcript unique_Triplet 390806363 390812339 5977 1 0.0167308014053873 RFvsST 10057 695693088 695683032 no 71.5953923481657 TraesCS2B01G282400 chr2B_390926300 chr2B 390926300 G G T T 4 synonymous_variant LOW transcript unique_Triplet 390923316 390926627 3312 1 0.0301932367149758 RFvsST 10057 695693088 695683032 no 467.261858656971 TraesCS2B01G282500 chr2B_390944064 chr2B 390944064 G G A A 4 synonymous_variant LOW transcript unique_Triplet 390941535 390946551 5017 1 0.0199322304165836 RFvsST 10057 695693088 695683032 no 1592.15329103228 TraesCS2B01G282600 chr2B_390971531 chr2B 390971531 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 390975100 390975306 207 5 2.41545893719807 RFvsST 10057 695693088 695683032 no 12.2829418561287 TraesCS2B01G282600 chr2B_390974803 chr2B 390974803 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 390975100 390975306 207 5 2.41545893719807 RFvsST 10057 695693088 695683032 no 12.2829418561287 TraesCS2B01G282600 chr2B_390977582 chr2B 390977582 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 390975100 390975306 207 5 2.41545893719807 RFvsST 10057 695693088 695683032 no 12.2829418561287 TraesCS2B01G282600 chr2B_390977834 chr2B 390977834 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 390975100 390975306 207 5 2.41545893719807 RFvsST 10057 695693088 695683032 no 12.2829418561287 TraesCS2B01G282600 chr2B_390973241 chr2B 390973241 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 390975100 390975306 207 5 2.41545893719807 RFvsST 10057 695693088 695683032 no 12.2829418561287 TraesCS2B01G284200 chr2B_391481779 chr2B 391481779 T T G G 4 missense_variant MODERATE transcript non_Triplet 391481380 391482341 962 5 0.51975051975052 RFvsST 10057 695693088 695683032 no 91.6047377376837 TraesCS2B01G284200 chr2B_391481628 chr2B 391481628 G G C C 4 missense_variant MODERATE transcript non_Triplet 391481380 391482341 962 5 0.51975051975052 RFvsST 10057 695693088 695683032 no 91.6047377376837 TraesCS2B01G284200 chr2B_391481286 chr2B 391481286 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 391481380 391482341 962 5 0.51975051975052 RFvsST 10057 695693088 695683032 no 91.6047377376837 TraesCS2B01G284200 chr2B_391481387 chr2B 391481387 G G A A 4 missense_variant MODERATE transcript non_Triplet 391481380 391482341 962 5 0.51975051975052 RFvsST 10057 695693088 695683032 no 91.6047377376837 TraesCS2B01G284200 chr2B_391481494 chr2B 391481494 G G A A 4 missense_variant MODERATE transcript non_Triplet 391481380 391482341 962 5 0.51975051975052 RFvsST 10057 695693088 695683032 no 91.6047377376837 TraesCS2B01G285200 chr2B_392893046 chr2B 392893046 G G A A 4 missense_variant MODERATE transcript unique_Triplet 392891921 392895820 3900 1 0.0256410256410256 RFvsST 10057 695693088 695683032 no 48.8421855029906 TraesCS2B01G285400 chr2B_393186205 chr2B 393186205 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 393185158 393188680 3523 2 0.0567697984672154 RFvsST 10057 695693088 695683032 no 285.378320456353 TraesCS2B01G285400 chr2B_393187165 chr2B 393187165 A A G G 4 synonymous_variant LOW transcript unique_Triplet 393185158 393188680 3523 2 0.0567697984672154 RFvsST 10057 695693088 695683032 no 285.378320456353 TraesCS2B01G285700 chr2B_393464517 chr2B 393464517 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 393465081 393467316 2236 1 0.0447227191413238 RFvsST 10057 695693088 695683032 no 6.00235675397157 TraesCS2B01G285800 chr2B_393468425 chr2B 393468425 T T G G 4 missense_variant MODERATE transcript unique_Triplet 393467745 393474571 6827 1 0.0146477222791856 RFvsST 10057 695693088 695683032 no 370.669742147263 TraesCS2B01G286400 chr2B_394361739 chr2B 394361739 A A G G 4 synonymous_variant LOW transcript unique_Triplet 394360002 394364417 4416 1 0.0226449275362319 RFvsST 10057 695693088 695683032 no 1151.93945452519 TraesCS2B01G287000 chr2B_396177918 chr2B 396177918 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 396175334 396177237 1904 3 0.157563025210084 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G287000 chr2B_396177917 chr2B 396177917 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 396175334 396177237 1904 3 0.157563025210084 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G287000 chr2B_396177996 chr2B 396177996 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 396175334 396177237 1904 3 0.157563025210084 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G287200 chr2B_396338353 chr2B 396338353 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 396338543 396341746 3204 2 0.0624219725343321 RFvsST 10057 695693088 695683032 no 241.768237874248 TraesCS2B01G287200 chr2B_396338513 chr2B 396338513 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 396338543 396341746 3204 2 0.0624219725343321 RFvsST 10057 695693088 695683032 no 241.768237874248 TraesCS2B01G287400 chr2B_396571078 chr2B 396571078 A A G G 4 synonymous_variant LOW transcript unique_Triplet 396566014 396571421 5408 2 0.0369822485207101 RFvsST 10057 695693088 695683032 no 265.532222648802 TraesCS2B01G287400 chr2B_396566502 chr2B 396566502 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 396566014 396571421 5408 2 0.0369822485207101 RFvsST 10057 695693088 695683032 no 265.532222648802 TraesCS2B01G287800 chr2B_397244839 chr2B 397244839 T T C C 4 missense_variant MODERATE transcript unique_Triplet 397244699 397251475 6777 1 0.0147557916482219 RFvsST 10057 695693088 695683032 no 84.7823454276177 TraesCS2B01G288300 chr2B_398394466 chr2B 398394466 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 398394748 398395077 330 1 0.303030303030303 RFvsST 10057 695693088 695683032 no 279.29744438634 TraesCS2B01G288600 chr2B_398706472 chr2B 398706472 G G A A 4 synonymous_variant LOW transcript unique_Triplet 398705615 398707036 1422 1 0.070323488045007 RFvsST 10057 695693088 695683032 no 109.837813439316 TraesCS2B01G289100 chr2B_399813062 chr2B 399813062 G G A A 4 synonymous_variant LOW transcript unique_Triplet 399812532 399834263 21732 2 0.00920301859009755 RFvsST 10057 695693088 695683032 no 88.840486696455 TraesCS2B01G289100 chr2B_399812966 chr2B 399812966 T T C C 4 synonymous_variant LOW transcript unique_Triplet 399812532 399834263 21732 2 0.00920301859009755 RFvsST 10057 695693088 695683032 no 88.840486696455 TraesCS2B01G290700 chr2B_403558001 chr2B 403558001 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 403562129 403562647 519 1 0.192678227360308 RFvsST 10057 695693088 695683032 no 418.478829935965 TraesCS2B01G290800 chr2B_403694073 chr2B 403694073 A A G G 4 missense_variant MODERATE transcript unique_Triplet 403693503 403703507 10005 1 0.00999500249875063 RFvsST 10057 695693088 695683032 no 200.31724216594 TraesCS2B01G291200 chr2B_404416411 chr2B 404416411 G G A A 4 synonymous_variant LOW transcript unique_Triplet 404410454 404427477 17024 4 0.0234962406015038 RFvsST 10057 695693088 695683032 no 117.011311498501 TraesCS2B01G291200 chr2B_404410549 chr2B 404410549 G G C C 4 missense_variant MODERATE transcript unique_Triplet 404410454 404427477 17024 4 0.0234962406015038 RFvsST 10057 695693088 695683032 no 117.011311498501 TraesCS2B01G291200 chr2B_404427499 chr2B 404427499 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 404410454 404427477 17024 4 0.0234962406015038 RFvsST 10057 695693088 695683032 no 117.011311498501 TraesCS2B01G291200 chr2B_404427423 chr2B 404427423 A A G G 4 missense_variant MODERATE transcript unique_Triplet 404410454 404427477 17024 4 0.0234962406015038 RFvsST 10057 695693088 695683032 no 117.011311498501 TraesCS2B01G291300 chr2B_404746589 chr2B 404746589 C C G G 4 missense_variant MODERATE transcript unique_Triplet 404744838 404747113 2276 3 0.131810193321617 RFvsST 10057 695693088 695683032 no 150.448403666384 TraesCS2B01G291300 chr2B_404746140 chr2B 404746140 G G A A 4 missense_variant MODERATE transcript unique_Triplet 404744838 404747113 2276 3 0.131810193321617 RFvsST 10057 695693088 695683032 no 150.448403666384 TraesCS2B01G291300 chr2B_404745048 chr2B 404745048 T T C C 4 missense_variant MODERATE transcript unique_Triplet 404744838 404747113 2276 3 0.131810193321617 RFvsST 10057 695693088 695683032 no 150.448403666384 TraesCS2B01G291600 chr2B_405270842 chr2B 405270842 G G A A 4 missense_variant MODERATE transcript unique_Triplet 405270086 405270877 792 1 0.126262626262626 RFvsST 10057 695693088 695683032 no 20.6745576507643 TraesCS2B01G291800 chr2B_405655215 chr2B 405655215 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 405646465 405655192 8728 2 0.0229147571035747 RFvsST 10057 695693088 695683032 no 1434.22656248193 TraesCS2B01G291800 chr2B_405655019 chr2B 405655019 G G A A 4 synonymous_variant LOW transcript unique_Triplet 405646465 405655192 8728 2 0.0229147571035747 RFvsST 10057 695693088 695683032 no 1434.22656248193 TraesCS2B01G292000 chr2B_406083662 chr2B 406083662 T T C C 4 synonymous_variant LOW transcript unique_Triplet 406076932 406090864 13933 1 0.00717720519629656 RFvsST 10057 695693088 695683032 no 40.8491928766848 TraesCS2B01G292500 chr2B_407226827 chr2B 407226827 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292500 chr2B_407226961 chr2B 407226961 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292500 chr2B_407226539 chr2B 407226539 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292500 chr2B_407226687 chr2B 407226687 C C T T 4 missense_variant MODERATE transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292500 chr2B_407237657 chr2B 407237657 A A C C 4 synonymous_variant LOW transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292500 chr2B_407226826 chr2B 407226826 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 407226551 407242781 16231 6 0.0369662990573594 RFvsST 10057 695693088 695683032 no 257.702781174312 TraesCS2B01G292600 chr2B_407232407 chr2B 407232407 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 407233015 407233467 453 1 0.22075055187638 RFvsST 10057 695693088 695683032 no 7.25285615366057 TraesCS2B01G292800 chr2B_407909977 chr2B 407909977 A A C C 4 missense_variant MODERATE transcript non_Triplet 407908402 407913083 4682 2 0.0427167876975651 RFvsST 10057 695693088 695683032 no 91.9878175900402 TraesCS2B01G292800 chr2B_407913065 chr2B 407913065 C C G G 4 missense_variant MODERATE transcript non_Triplet 407908402 407913083 4682 2 0.0427167876975651 RFvsST 10057 695693088 695683032 no 91.9878175900402 TraesCS2B01G293500 chr2B_409344507 chr2B 409344507 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 409330496 409344260 13765 1 0.00726480203414457 RFvsST 10057 695693088 695683032 no 176.609648712056 TraesCS2B01G293800 chr2B_410063604 chr2B 410063604 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 410061397 410063477 2081 1 0.0480538202787122 RFvsST 10057 695693088 695683032 no 699.192464703409 TraesCS2B01G294600 chr2B_411491471 chr2B 411491471 C C G G 4 synonymous_variant LOW transcript unique_Triplet 411490773 411493459 2687 1 0.0372162262746558 RFvsST 10057 695693088 695683032 no 164.312551798541 TraesCS2B01G295300 chr2B_412401996 chr2B 412401996 G G C C 4 missense_variant MODERATE transcript non_Triplet 412399666 412402059 2394 2 0.0835421888053467 RFvsST 10057 695693088 695683032 no 272.794796074767 TraesCS2B01G295300 chr2B_412401770 chr2B 412401770 T T C C 4 missense_variant MODERATE transcript non_Triplet 412399666 412402059 2394 2 0.0835421888053467 RFvsST 10057 695693088 695683032 no 272.794796074767 TraesCS2B01G295400 chr2B_412407431 chr2B 412407431 A A G G 4 synonymous_variant LOW transcript unique_Triplet 412402400 412408315 5916 2 0.0338066260987153 RFvsST 10057 695693088 695683032 no 102.429814557845 TraesCS2B01G295400 chr2B_412404545 chr2B 412404545 C C T T 4 synonymous_variant LOW transcript unique_Triplet 412402400 412408315 5916 2 0.0338066260987153 RFvsST 10057 695693088 695683032 no 102.429814557845 TraesCS2B01G296000 chr2B_412991605 chr2B 412991605 T T C C 4 synonymous_variant LOW transcript non_Triplet 412989130 412992640 3511 3 0.0854457419538593 RFvsST 10057 695693088 695683032 no 215.072933967925 TraesCS2B01G296000 chr2B_412990277 chr2B 412990277 A A G G 4 missense_variant MODERATE transcript non_Triplet 412989130 412992640 3511 3 0.0854457419538593 RFvsST 10057 695693088 695683032 no 215.072933967925 TraesCS2B01G296000 chr2B_412990390 chr2B 412990390 C C T T 4 synonymous_variant LOW transcript non_Triplet 412989130 412992640 3511 3 0.0854457419538593 RFvsST 10057 695693088 695683032 no 215.072933967925 TraesCS2B01G296100 chr2B_413063811 chr2B 413063811 T T G G 4 synonymous_variant LOW transcript unique_Triplet 413062237 413064575 2339 1 0.0427533133817871 RFvsST 10057 695693088 695683032 no 26.23236545831 TraesCS2B01G296300 chr2B_413446271 chr2B 413446271 G G A A 4 missense_variant MODERATE transcript unique_Triplet 413446058 413447324 1267 3 0.236779794790845 RFvsST 10057 695693088 695683032 no 27.7672749987904 TraesCS2B01G296300 chr2B_413449168 chr2B 413449168 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 413446058 413447324 1267 3 0.236779794790845 RFvsST 10057 695693088 695683032 no 27.7672749987904 TraesCS2B01G296300 chr2B_413446270 chr2B 413446270 A A G G 4 synonymous_variant LOW transcript unique_Triplet 413446058 413447324 1267 3 0.236779794790845 RFvsST 10057 695693088 695683032 no 27.7672749987904 TraesCS2B01G296500 chr2B_414072466 chr2B 414072466 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 414072429 414078390 5962 1 0.0167728950016773 RFvsST 10057 695693088 695683032 no 79.7778631099368 TraesCS2B01G296700 chr2B_415059534 chr2B 415059534 A A G G 4 missense_variant MODERATE transcript unique_Triplet 415054113 415059651 5539 2 0.0361076006499368 RFvsST 10057 695693088 695683032 no 8.34086182466048 TraesCS2B01G296700 chr2B_415055295 chr2B 415055295 T T C C 4 synonymous_variant LOW transcript unique_Triplet 415054113 415059651 5539 2 0.0361076006499368 RFvsST 10057 695693088 695683032 no 8.34086182466048 TraesCS2B01G296900 chr2B_415358845 chr2B 415358845 T T C C 4 synonymous_variant LOW transcript unique_Triplet 415354421 415358905 4485 1 0.0222965440356745 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G297000 chr2B_415442533 chr2B 415442533 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 415444051 415448282 4232 2 0.0472589792060491 RFvsST 10057 695693088 695683032 no 23.4058622460524 TraesCS2B01G297000 chr2B_415442691 chr2B 415442691 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 415444051 415448282 4232 2 0.0472589792060491 RFvsST 10057 695693088 695683032 no 23.4058622460524 TraesCS2B01G297600 chr2B_416831800 chr2B 416831800 C C T T 4 missense_variant MODERATE transcript unique_Triplet 416813972 416832041 18070 1 0.00553403431101273 RFvsST 10057 695693088 695683032 no 96.1016622735484 TraesCS2B01G297700 chr2B_416874848 chr2B 416874848 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 416871425 416873953 2529 1 0.0395413206801107 RFvsST 10057 695693088 695683032 no 149.745807437102 TraesCS2B01G298000 chr2B_417084616 chr2B 417084616 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 417080145 417084669 4525 3 0.0662983425414365 RFvsST 10057 695693088 695683032 no 123.930099548902 TraesCS2B01G298000 chr2B_417084752 chr2B 417084752 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 417080145 417084669 4525 3 0.0662983425414365 RFvsST 10057 695693088 695683032 no 123.930099548902 TraesCS2B01G298000 chr2B_417084599 chr2B 417084599 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 417080145 417084669 4525 3 0.0662983425414365 RFvsST 10057 695693088 695683032 no 123.930099548902 TraesCS2B01G298400 chr2B_417793523 chr2B 417793523 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 417793191 417804841 11651 2 0.0171659085057077 RFvsST 10057 695693088 695683032 no 69.889561958627 TraesCS2B01G298400 chr2B_417793215 chr2B 417793215 A A T T 4 synonymous_variant LOW transcript nonUnique_Triplet 417793191 417804841 11651 2 0.0171659085057077 RFvsST 10057 695693088 695683032 no 69.889561958627 TraesCS2B01G298800 chr2B_418776546 chr2B 418776546 C C T T 4 synonymous_variant LOW transcript unique_Triplet 418776187 418777873 1687 1 0.0592768227622999 RFvsST 10057 695693088 695683032 no 126.315074586668 TraesCS2B01G299000 chr2B_418964937 chr2B 418964937 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 418955778 418964826 9049 1 0.0110509448557852 RFvsST 10057 695693088 695683032 no 80.6600332031895 TraesCS2B01G299300 chr2B_419615748 chr2B 419615748 A A G G 4 missense_variant MODERATE transcript unique_Triplet 419612679 419617749 5071 1 0.0197199763360284 RFvsST 10057 695693088 695683032 no 188.025625166787 TraesCS2B01G302400 chr2B_425796377 chr2B 425796377 G G C C 4 missense_variant MODERATE transcript unique_Triplet 425794958 425796757 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 271.566518746593 TraesCS2B01G302400 chr2B_425796649 chr2B 425796649 C C G G 4 missense_variant MODERATE transcript unique_Triplet 425794958 425796757 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 271.566518746593 TraesCS2B01G302400 chr2B_425796648 chr2B 425796648 A A T T 4 missense_variant MODERATE transcript unique_Triplet 425794958 425796757 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 271.566518746593 TraesCS2B01G303100 chr2B_429258029 chr2B 429258029 A G A G 3 synonymous_variant LOW transcript non_Triplet 429253094 429261076 7983 1 0.0125266190655142 RFvsST 10057 695693088 695683032 no 268.552578416211 TraesCS2B01G303300 chr2B_429487396 chr2B 429487396 G G A A 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 429476741 429491420 14680 1 0.00681198910081744 RFvsST 10057 695693088 695683032 no 1543.72728582048 TraesCS2B01G306500 chr2B_437381529 chr2B 437381529 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 437381454 437383041 1588 4 0.251889168765743 RFvsST 10057 695693088 695683032 no 164.465632639762 TraesCS2B01G306500 chr2B_437382259 chr2B 437382259 C C G G 4 missense_variant MODERATE transcript non_Triplet 437381454 437383041 1588 4 0.251889168765743 RFvsST 10057 695693088 695683032 no 164.465632639762 TraesCS2B01G306500 chr2B_437382766 chr2B 437382766 G G A A 4 missense_variant MODERATE transcript non_Triplet 437381454 437383041 1588 4 0.251889168765743 RFvsST 10057 695693088 695683032 no 164.465632639762 TraesCS2B01G306500 chr2B_437382001 chr2B 437382001 C C T T 4 synonymous_variant LOW transcript non_Triplet 437381454 437383041 1588 4 0.251889168765743 RFvsST 10057 695693088 695683032 no 164.465632639762 TraesCS2B01G306600 chr2B_438458680 chr2B 438458680 A A C C 4 missense_variant MODERATE transcript unique_Triplet 438458662 438459753 1092 1 0.0915750915750916 RFvsST 10057 695693088 695683032 no 51.0282282246246 TraesCS2B01G306800 chr2B_439218413 chr2B 439218413 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 439217615 439223625 6011 1 0.016636167027117 RFvsST 10057 695693088 695683032 no 919.715300263965 TraesCS2B01G306900 chr2B_439218990 chr2B 439218990 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439220382 chr2B 439220382 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439220833 chr2B 439220833 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439219170 chr2B 439219170 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439220719 chr2B 439220719 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439225260 chr2B 439225260 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439220290 chr2B 439220290 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439218905 chr2B 439218905 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G306900 chr2B_439220344 chr2B 439220344 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439223901 439224799 899 9 1.00111234705228 RFvsST 10057 695693088 695683032 no 19.8062972261819 TraesCS2B01G307100 chr2B_439366905 chr2B 439366905 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 439366205 439367219 1015 3 0.295566502463054 RFvsST 10057 695693088 695683032 no 2225.81249897753 TraesCS2B01G307100 chr2B_439365971 chr2B 439365971 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439366205 439367219 1015 3 0.295566502463054 RFvsST 10057 695693088 695683032 no 2225.81249897753 TraesCS2B01G307100 chr2B_439366935 chr2B 439366935 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 439366205 439367219 1015 3 0.295566502463054 RFvsST 10057 695693088 695683032 no 2225.81249897753 TraesCS2B01G307300 chr2B_439767397 chr2B 439767397 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 439767661 439773279 5619 1 0.0177967609894999 RFvsST 10057 695693088 695683032 no 273.878391634656 TraesCS2B01G307400 chr2B_439886312 chr2B 439886312 C G C G 3 missense_variant MODERATE transcript unique_Triplet 439880186 439887064 6879 3 0.0436109899694723 RFvsST 10057 695693088 695683032 no 89.5549896355528 TraesCS2B01G307400 chr2B_439885775 chr2B 439885775 C G C G 3 missense_variant MODERATE transcript unique_Triplet 439880186 439887064 6879 3 0.0436109899694723 RFvsST 10057 695693088 695683032 no 89.5549896355528 TraesCS2B01G307400 chr2B_439885511 chr2B 439885511 C C T T 4 synonymous_variant LOW transcript unique_Triplet 439880186 439887064 6879 3 0.0436109899694723 RFvsST 10057 695693088 695683032 no 89.5549896355528 TraesCS2B01G307500 chr2B_440214909 chr2B 440214909 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 440210046 440214763 4718 4 0.0847816871555744 RFvsST 10057 695693088 695683032 no 505.255624101373 TraesCS2B01G307500 chr2B_440210348 chr2B 440210348 C C G G 4 missense_variant MODERATE transcript unique_Triplet 440210046 440214763 4718 4 0.0847816871555744 RFvsST 10057 695693088 695683032 no 505.255624101373 TraesCS2B01G307500 chr2B_440209736 chr2B 440209736 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 440210046 440214763 4718 4 0.0847816871555744 RFvsST 10057 695693088 695683032 no 505.255624101373 TraesCS2B01G307500 chr2B_440214913 chr2B 440214913 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 440210046 440214763 4718 4 0.0847816871555744 RFvsST 10057 695693088 695683032 no 505.255624101373 TraesCS2B01G307600 chr2B_440225277 chr2B 440225277 G G C C 4 synonymous_variant LOW transcript unique_Triplet 440222588 440225357 2770 1 0.036101083032491 RFvsST 10057 695693088 695683032 no 110.268904552273 TraesCS2B01G308200 chr2B_441078926 chr2B 441078926 C C T T 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 441075843 441078981 3139 2 0.0637145587766805 RFvsST 10057 695693088 695683032 no 54.0239483104838 TraesCS2B01G308200 chr2B_441077126 chr2B 441077126 T T C C 4 synonymous_variant LOW transcript unique_Triplet 441075843 441078981 3139 2 0.0637145587766805 RFvsST 10057 695693088 695683032 no 54.0239483104838 TraesCS2B01G308300 chr2B_441081248 chr2B 441081248 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 441079769 441081061 1293 2 0.154679040989946 RFvsST 10057 695693088 695683032 no 1092.85828126576 TraesCS2B01G308300 chr2B_441079831 chr2B 441079831 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 441079769 441081061 1293 2 0.154679040989946 RFvsST 10057 695693088 695683032 no 1092.85828126576 TraesCS2B01G308500 chr2B_441793409 chr2B 441793409 A A G G 4 synonymous_variant LOW transcript non_Triplet 441792651 441793895 1245 3 0.240963855421687 RFvsST 10057 695693088 695683032 no 260.652682125774 TraesCS2B01G308500 chr2B_441793979 chr2B 441793979 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 441792651 441793895 1245 3 0.240963855421687 RFvsST 10057 695693088 695683032 no 260.652682125774 TraesCS2B01G308500 chr2B_441794008 chr2B 441794008 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 441792651 441793895 1245 3 0.240963855421687 RFvsST 10057 695693088 695683032 no 260.652682125774 TraesCS2B01G308600 chr2B_441861735 chr2B 441861735 C C T T 4 synonymous_variant LOW transcript unique_Triplet 441860055 441867032 6978 2 0.0286615075952995 RFvsST 10057 695693088 695683032 no 180.570043664658 TraesCS2B01G308600 chr2B_441866453 chr2B 441866453 C C A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 441860055 441867032 6978 2 0.0286615075952995 RFvsST 10057 695693088 695683032 no 180.570043664658 TraesCS2B01G309400 chr2B_442338543 chr2B 442338543 C C T T 4 synonymous_variant LOW transcript unique_Triplet 442333891 442338906 5016 2 0.0398724082934609 RFvsST 10057 695693088 695683032 no 116.428956817864 TraesCS2B01G309400 chr2B_442335149 chr2B 442335149 G G A A 4 synonymous_variant LOW transcript unique_Triplet 442333891 442338906 5016 2 0.0398724082934609 RFvsST 10057 695693088 695683032 no 116.428956817864 TraesCS2B01G309500 chr2B_442514851 chr2B 442514851 A A G G 4 missense_variant MODERATE transcript unique_Triplet 442514802 442525037 10236 5 0.0488472059398202 RFvsST 10057 695693088 695683032 no 58.6901390568579 TraesCS2B01G309500 chr2B_442514724 chr2B 442514724 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 442514802 442525037 10236 5 0.0488472059398202 RFvsST 10057 695693088 695683032 no 58.6901390568579 TraesCS2B01G309500 chr2B_442522126 chr2B 442522126 A A G G 4 missense_variant MODERATE transcript unique_Triplet 442514802 442525037 10236 5 0.0488472059398202 RFvsST 10057 695693088 695683032 no 58.6901390568579 TraesCS2B01G309500 chr2B_442514720 chr2B 442514720 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 442514802 442525037 10236 5 0.0488472059398202 RFvsST 10057 695693088 695683032 no 58.6901390568579 TraesCS2B01G309500 chr2B_442524027 chr2B 442524027 T T G G 4 missense_variant MODERATE transcript unique_Triplet 442514802 442525037 10236 5 0.0488472059398202 RFvsST 10057 695693088 695683032 no 58.6901390568579 TraesCS2B01G309600 chr2B_442569637 chr2B 442569637 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 442569688 442579381 9694 2 0.020631318341242 RFvsST 10057 695693088 695683032 no 690.932833328979 TraesCS2B01G309600 chr2B_442569592 chr2B 442569592 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 442569688 442579381 9694 2 0.020631318341242 RFvsST 10057 695693088 695683032 no 690.932833328979 TraesCS2B01G309900 chr2B_442796872 chr2B 442796872 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 442795590 442798055 2466 1 0.040551500405515 RFvsST 10057 695693088 695683032 no 333.604989746971 TraesCS2B01G310000 chr2B_442920854 chr2B 442920854 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 442915003 442916869 1867 1 0.0535618639528656 RFvsST 10057 695693088 695683032 no 484.360065898756 TraesCS2B01G310200 chr2B_443157933 chr2B 443157933 C C T T 4 synonymous_variant LOW transcript unique_Triplet 443154845 443158913 4069 2 0.0491521258294421 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G310200 chr2B_443161285 chr2B 443161285 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 443154845 443158913 4069 2 0.0491521258294421 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G311100 chr2B_445175023 chr2B 445175023 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 445172492 445172944 453 2 0.441501103752759 RFvsST 10057 695693088 695683032 no 127.557109509495 TraesCS2B01G311100 chr2B_445172861 chr2B 445172861 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 445172492 445172944 453 2 0.441501103752759 RFvsST 10057 695693088 695683032 no 127.557109509495 TraesCS2B01G311200 chr2B_445174778 chr2B 445174778 T T C C 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 445174536 445179367 4832 2 0.0413907284768212 RFvsST 10057 695693088 695683032 no 741.126025022933 TraesCS2B01G311200 chr2B_445177303 chr2B 445177303 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 445174536 445179367 4832 2 0.0413907284768212 RFvsST 10057 695693088 695683032 no 741.126025022933 TraesCS2B01G311300 chr2B_445251869 chr2B 445251869 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 445250985 445252240 1256 1 0.0796178343949045 RFvsST 10057 695693088 695683032 no 235.019433823049 TraesCS2B01G311700 chr2B_445687349 chr2B 445687349 G G A A 4 synonymous_variant LOW transcript unique_Triplet 445687250 445691276 4027 1 0.0248323814253787 RFvsST 10057 695693088 695683032 no 33.5665647460879 TraesCS2B01G312100 chr2B_447362620 chr2B 447362620 G G A A 4 synonymous_variant LOW transcript non_Triplet 447362131 447368801 6671 1 0.0149902563333833 RFvsST 10057 695693088 695683032 no 72.8551876614178 TraesCS2B01G312300 chr2B_447740915 chr2B 447740915 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 447741075 447746304 5230 1 0.0191204588910134 RFvsST 10057 695693088 695683032 no 302.375073850117 TraesCS2B01G314000 chr2B_449168870 chr2B 449168870 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 449164708 449168903 4196 1 0.0238322211630124 RFvsST 10057 695693088 695683032 no 353.695651761116 TraesCS2B01G314700 chr2B_449842049 chr2B 449842049 A A C C 4 missense_variant MODERATE transcript unique_Triplet 449839395 449842348 2954 2 0.0677048070412999 RFvsST 10057 695693088 695683032 no 124.102841445481 TraesCS2B01G314700 chr2B_449839469 chr2B 449839469 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 449839395 449842348 2954 2 0.0677048070412999 RFvsST 10057 695693088 695683032 no 124.102841445481 TraesCS2B01G315100 chr2B_450370718 chr2B 450370718 G G A A 4 synonymous_variant LOW transcript unique_Triplet 450369485 450371041 1557 4 0.256904303147078 RFvsST 10057 695693088 695683032 no 385.498712307866 TraesCS2B01G315100 chr2B_450370034 chr2B 450370034 G G C C 4 synonymous_variant LOW transcript unique_Triplet 450369485 450371041 1557 4 0.256904303147078 RFvsST 10057 695693088 695683032 no 385.498712307866 TraesCS2B01G315100 chr2B_450370887 chr2B 450370887 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 450369485 450371041 1557 4 0.256904303147078 RFvsST 10057 695693088 695683032 no 385.498712307866 TraesCS2B01G315100 chr2B_450370724 chr2B 450370724 A A G G 4 synonymous_variant LOW transcript unique_Triplet 450369485 450371041 1557 4 0.256904303147078 RFvsST 10057 695693088 695683032 no 385.498712307866 TraesCS2B01G315300 chr2B_450759644 chr2B 450759644 C T C T 3 synonymous_variant LOW transcript unique_Triplet 450757856 450759941 2086 2 0.0958772770853308 RFvsST 10057 695693088 695683032 no 1226.49053729278 TraesCS2B01G315300 chr2B_450757912 chr2B 450757912 A G A G 3 synonymous_variant LOW transcript unique_Triplet 450757856 450759941 2086 2 0.0958772770853308 RFvsST 10057 695693088 695683032 no 1226.49053729278 TraesCS2B01G315400 chr2B_450760126 chr2B 450760126 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 450764928 450765557 630 1 0.158730158730159 RFvsST 10057 695693088 695683032 no 10.9690377955426 TraesCS2B01G316300 chr2B_451517708 chr2B 451517708 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316300 chr2B_451517851 chr2B 451517851 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316300 chr2B_451517709 chr2B 451517709 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316300 chr2B_451521303 chr2B 451521303 A A C C 4 synonymous_variant LOW transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316300 chr2B_451517993 chr2B 451517993 A A T T 4 synonymous_variant LOW transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316300 chr2B_451522192 chr2B 451522192 G A G A 3 missense_variant MODERATE transcript unique_Triplet 451517900 451527394 9495 6 0.0631911532385466 RFvsST 10057 695693088 695683032 no 255.770168750806 TraesCS2B01G316400 chr2B_451824297 chr2B 451824297 T T C C 4 missense_variant MODERATE transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316400 chr2B_451835656 chr2B 451835656 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316400 chr2B_451835795 chr2B 451835795 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316400 chr2B_451824918 chr2B 451824918 T C T C 3 missense_variant MODERATE transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316400 chr2B_451825412 chr2B 451825412 T T C C 4 synonymous_variant LOW transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316400 chr2B_451835797 chr2B 451835797 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 451817257 451832548 15292 6 0.0392362019356526 RFvsST 10057 695693088 695683032 no 161.564800837684 TraesCS2B01G316500 chr2B_451833516 chr2B 451833516 C C T T 4 synonymous_variant LOW transcript unique_Triplet 451833484 451835753 2270 1 0.0440528634361234 RFvsST 10057 695693088 695683032 no 60.0801480295567 TraesCS2B01G317100 chr2B_452772987 chr2B 452772987 A C A C 3 missense_variant MODERATE transcript unique_Triplet 452772889 452773817 929 1 0.107642626480086 RFvsST 10057 695693088 695683032 no 27.4577061311285 TraesCS2B01G317300 chr2B_453017021 chr2B 453017021 C T C T 3 missense_variant MODERATE transcript unique_Triplet 453016778 453019714 2937 1 0.0340483486550902 RFvsST 10057 695693088 695683032 no 151.895216702748 TraesCS2B01G317600 chr2B_453079384 chr2B 453079384 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 453077970 453078937 968 4 0.413223140495868 RFvsST 10057 695693088 695683032 no 687.580958647948 TraesCS2B01G317600 chr2B_453077935 chr2B 453077935 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 453077970 453078937 968 4 0.413223140495868 RFvsST 10057 695693088 695683032 no 687.580958647948 TraesCS2B01G317600 chr2B_453077999 chr2B 453077999 C T C T 3 synonymous_variant LOW transcript non_Triplet 453077970 453078937 968 4 0.413223140495868 RFvsST 10057 695693088 695683032 no 687.580958647948 TraesCS2B01G317600 chr2B_453079399 chr2B 453079399 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 453077970 453078937 968 4 0.413223140495868 RFvsST 10057 695693088 695683032 no 687.580958647948 TraesCS2B01G317800 chr2B_453272780 chr2B 453272780 G A G A 3 synonymous_variant LOW transcript unique_Triplet 453272110 453274579 2470 1 0.0404858299595142 RFvsST 10057 695693088 695683032 no 40.2438936525357 TraesCS2B01G318100 chr2B_453817355 chr2B 453817355 G G A A 4 synonymous_variant LOW transcript unique_Triplet 453815067 453818361 3295 1 0.0303490136570561 RFvsST 10057 695693088 695683032 no 981.018122827247 TraesCS2B01G318300 chr2B_454017701 chr2B 454017701 G G A A 4 missense_variant MODERATE transcript unique_Triplet 454010225 454018956 8732 2 0.0229042601923958 RFvsST 10057 695693088 695683032 no 32.3292456495993 TraesCS2B01G318300 chr2B_454019132 chr2B 454019132 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 454010225 454018956 8732 2 0.0229042601923958 RFvsST 10057 695693088 695683032 no 32.3292456495993 TraesCS2B01G318500 chr2B_454338584 chr2B 454338584 G G A A 4 missense_variant MODERATE transcript unique_Triplet 454337625 454339814 2190 3 0.136986301369863 RFvsST 10057 695693088 695683032 no 113.504465023033 TraesCS2B01G318500 chr2B_454342636 chr2B 454342636 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 454337625 454339814 2190 3 0.136986301369863 RFvsST 10057 695693088 695683032 no 113.504465023033 TraesCS2B01G318500 chr2B_454338400 chr2B 454338400 A A G G 4 missense_variant MODERATE transcript unique_Triplet 454337625 454339814 2190 3 0.136986301369863 RFvsST 10057 695693088 695683032 no 113.504465023033 TraesCS2B01G318600 chr2B_454344618 chr2B 454344618 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 454342642 454344854 2213 3 0.135562584726615 RFvsST 10057 695693088 695683032 no 182.814674382877 TraesCS2B01G318600 chr2B_454342665 chr2B 454342665 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 454342642 454344854 2213 3 0.135562584726615 RFvsST 10057 695693088 695683032 no 182.814674382877 TraesCS2B01G318600 chr2B_454344646 chr2B 454344646 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 454342642 454344854 2213 3 0.135562584726615 RFvsST 10057 695693088 695683032 no 182.814674382877 TraesCS2B01G319600 chr2B_455588527 chr2B 455588527 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 455586951 455588968 2018 1 0.0495540138751239 RFvsST 10057 695693088 695683032 no 70.9647201093876 TraesCS2B01G319800 chr2B_456024324 chr2B 456024324 G G C C 4 synonymous_variant LOW transcript unique_Triplet 456023602 456028119 4518 5 0.110668437361664 RFvsST 10057 695693088 695683032 no 405.310542990056 TraesCS2B01G319800 chr2B_456023838 chr2B 456023838 G G A A 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 456023602 456028119 4518 5 0.110668437361664 RFvsST 10057 695693088 695683032 no 405.310542990056 TraesCS2B01G319800 chr2B_456025682 chr2B 456025682 G G A A 4 missense_variant MODERATE transcript unique_Triplet 456023602 456028119 4518 5 0.110668437361664 RFvsST 10057 695693088 695683032 no 405.310542990056 TraesCS2B01G319800 chr2B_456023792 chr2B 456023792 C C A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 456023602 456028119 4518 5 0.110668437361664 RFvsST 10057 695693088 695683032 no 405.310542990056 TraesCS2B01G319800 chr2B_456024552 chr2B 456024552 G G A A 4 synonymous_variant LOW transcript unique_Triplet 456023602 456028119 4518 5 0.110668437361664 RFvsST 10057 695693088 695683032 no 405.310542990056 TraesCS2B01G320000 chr2B_456051465 chr2B 456051465 A A G G 4 missense_variant MODERATE transcript non_Triplet 456051275 456053402 2128 2 0.093984962406015 RFvsST 10057 695693088 695683032 no 190.795921404046 TraesCS2B01G320000 chr2B_456053338 chr2B 456053338 T T C C 4 missense_variant MODERATE transcript non_Triplet 456051275 456053402 2128 2 0.093984962406015 RFvsST 10057 695693088 695683032 no 190.795921404046 TraesCS2B01G320100 chr2B_456177343 chr2B 456177343 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 456172737 456176885 4149 2 0.0482043865991805 RFvsST 10057 695693088 695683032 no 173.18989419206 TraesCS2B01G320100 chr2B_456177073 chr2B 456177073 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 456172737 456176885 4149 2 0.0482043865991805 RFvsST 10057 695693088 695683032 no 173.18989419206 TraesCS2B01G320200 chr2B_456178781 chr2B 456178781 C C T T 4 missense_variant MODERATE transcript non_Triplet 456177881 456178856 976 1 0.102459016393443 RFvsST 10057 695693088 695683032 no 15.2155498093177 TraesCS2B01G320300 chr2B_456338747 chr2B 456338747 G G A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 456336277 456339835 3559 1 0.0280977802753582 RFvsST 10057 695693088 695683032 no 121.359361528363 TraesCS2B01G320400 chr2B_456343021 chr2B 456343021 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 456340595 456344866 4272 1 0.0234082397003745 RFvsST 10057 695693088 695683032 no 113.839447594456 TraesCS2B01G320500 chr2B_457112950 chr2B 457112950 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 457109102 457113371 4270 1 0.0234192037470726 RFvsST 10057 695693088 695683032 no 161.367566633506 TraesCS2B01G320800 chr2B_457343204 chr2B 457343204 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320800 chr2B_457364767 chr2B 457364767 T T C C 4 synonymous_variant LOW transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320800 chr2B_457364724 chr2B 457364724 A A G G 4 missense_variant MODERATE transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320800 chr2B_457355119 chr2B 457355119 C C T T 4 missense_variant MODERATE transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320800 chr2B_457364704 chr2B 457364704 A A G G 4 synonymous_variant LOW transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320800 chr2B_457366744 chr2B 457366744 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457343084 457367066 23983 6 0.0250177208856273 RFvsST 10057 695693088 695683032 no 81.1305801686778 TraesCS2B01G320900 chr2B_457384288 chr2B 457384288 C C G G 4 synonymous_variant LOW transcript unique_Triplet 457383727 457386063 2337 5 0.213949507916132 RFvsST 10057 695693088 695683032 no 144.167172383889 TraesCS2B01G320900 chr2B_457383661 chr2B 457383661 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457383727 457386063 2337 5 0.213949507916132 RFvsST 10057 695693088 695683032 no 144.167172383889 TraesCS2B01G320900 chr2B_457383981 chr2B 457383981 T T G G 4 synonymous_variant LOW transcript unique_Triplet 457383727 457386063 2337 5 0.213949507916132 RFvsST 10057 695693088 695683032 no 144.167172383889 TraesCS2B01G320900 chr2B_457385946 chr2B 457385946 A A G G 4 synonymous_variant LOW transcript unique_Triplet 457383727 457386063 2337 5 0.213949507916132 RFvsST 10057 695693088 695683032 no 144.167172383889 TraesCS2B01G320900 chr2B_457385007 chr2B 457385007 C C T T 4 synonymous_variant LOW transcript unique_Triplet 457383727 457386063 2337 5 0.213949507916132 RFvsST 10057 695693088 695683032 no 144.167172383889 TraesCS2B01G321000 chr2B_457681677 chr2B 457681677 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457680919 457683479 2561 3 0.117141741507224 RFvsST 10057 695693088 695683032 no 223.530597269972 TraesCS2B01G321000 chr2B_457680925 chr2B 457680925 G G A A 4 synonymous_variant LOW transcript unique_Triplet 457680919 457683479 2561 3 0.117141741507224 RFvsST 10057 695693088 695683032 no 223.530597269972 TraesCS2B01G321000 chr2B_457680802 chr2B 457680802 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457680919 457683479 2561 3 0.117141741507224 RFvsST 10057 695693088 695683032 no 223.530597269972 TraesCS2B01G321200 chr2B_458081860 chr2B 458081860 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 458071504 458081791 10288 2 0.0194401244167963 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G321200 chr2B_458081935 chr2B 458081935 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 458071504 458081791 10288 2 0.0194401244167963 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G321300 chr2B_458249004 chr2B 458249004 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 458241449 458248905 7457 1 0.013410218586563 RFvsST 10057 695693088 695683032 no 16.8014847805205 TraesCS2B01G322300 chr2B_460823465 chr2B 460823465 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 460802322 460818840 16519 3 0.0181609056238271 RFvsST 10057 695693088 695683032 no 5.52773368896961 TraesCS2B01G322300 chr2B_460823467 chr2B 460823467 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 460802322 460818840 16519 3 0.0181609056238271 RFvsST 10057 695693088 695683032 no 5.52773368896961 TraesCS2B01G322300 chr2B_460823288 chr2B 460823288 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 460802322 460818840 16519 3 0.0181609056238271 RFvsST 10057 695693088 695683032 no 5.52773368896961 TraesCS2B01G322500 chr2B_461091943 chr2B 461091943 T T C C 4 missense_variant MODERATE transcript unique_Triplet 461091666 461092884 1219 1 0.0820344544708778 RFvsST 10057 695693088 695683032 no 63.5801484894466 TraesCS2B01G323100 chr2B_461741226 chr2B 461741226 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 461735986 461741015 5030 2 0.0397614314115308 RFvsST 10057 695693088 695683032 no 474.379275385851 TraesCS2B01G323100 chr2B_461741183 chr2B 461741183 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 461735986 461741015 5030 2 0.0397614314115308 RFvsST 10057 695693088 695683032 no 474.379275385851 TraesCS2B01G323600 chr2B_462887258 chr2B 462887258 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 462882838 462884444 1607 3 0.186683260734287 RFvsST 10057 695693088 695683032 no 3.56444360950855 TraesCS2B01G323600 chr2B_462888780 chr2B 462888780 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 462882838 462884444 1607 3 0.186683260734287 RFvsST 10057 695693088 695683032 no 3.56444360950855 TraesCS2B01G323600 chr2B_462888687 chr2B 462888687 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 462882838 462884444 1607 3 0.186683260734287 RFvsST 10057 695693088 695683032 no 3.56444360950855 TraesCS2B01G323800 chr2B_462948123 chr2B 462948123 A A C C 4 missense_variant MODERATE transcript unique_Triplet 462947007 462949606 2600 3 0.115384615384615 RFvsST 10057 695693088 695683032 no 57.5671322616846 TraesCS2B01G323800 chr2B_462947184 chr2B 462947184 T T C C 4 synonymous_variant LOW transcript unique_Triplet 462947007 462949606 2600 3 0.115384615384615 RFvsST 10057 695693088 695683032 no 57.5671322616846 TraesCS2B01G323800 chr2B_462949369 chr2B 462949369 C C A A 4 missense_variant MODERATE transcript unique_Triplet 462947007 462949606 2600 3 0.115384615384615 RFvsST 10057 695693088 695683032 no 57.5671322616846 TraesCS2B01G324100 chr2B_463210079 chr2B 463210079 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 463210083 463211866 1784 1 0.0560538116591928 RFvsST 10057 695693088 695683032 no 103.870836741081 TraesCS2B01G324200 chr2B_463281182 chr2B 463281182 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 463278235 463281001 2767 4 0.144560896277557 RFvsST 10057 695693088 695683032 no 63.2105005293258 TraesCS2B01G324200 chr2B_463280913 chr2B 463280913 G A G A 3 missense_variant MODERATE transcript unique_Triplet 463278235 463281001 2767 4 0.144560896277557 RFvsST 10057 695693088 695683032 no 63.2105005293258 TraesCS2B01G324200 chr2B_463280914 chr2B 463280914 C A C A 3 missense_variant MODERATE transcript unique_Triplet 463278235 463281001 2767 4 0.144560896277557 RFvsST 10057 695693088 695683032 no 63.2105005293258 TraesCS2B01G324200 chr2B_463278995 chr2B 463278995 A A G G 4 missense_variant MODERATE transcript unique_Triplet 463278235 463281001 2767 4 0.144560896277557 RFvsST 10057 695693088 695683032 no 63.2105005293258 TraesCS2B01G324300 chr2B_463286095 chr2B 463286095 G G C C 4 synonymous_variant LOW transcript unique_Triplet 463281899 463286336 4438 3 0.067598017124831 RFvsST 10057 695693088 695683032 no 70.9178141176751 TraesCS2B01G324300 chr2B_463282157 chr2B 463282157 G G A A 4 synonymous_variant LOW transcript unique_Triplet 463281899 463286336 4438 3 0.067598017124831 RFvsST 10057 695693088 695683032 no 70.9178141176751 TraesCS2B01G324300 chr2B_463284649 chr2B 463284649 G G A A 4 synonymous_variant LOW transcript unique_Triplet 463281899 463286336 4438 3 0.067598017124831 RFvsST 10057 695693088 695683032 no 70.9178141176751 TraesCS2B01G324400 chr2B_463771117 chr2B 463771117 A A C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 463765756 463771150 5395 3 0.0556070435588508 RFvsST 10057 695693088 695683032 no 2056.30763959632 TraesCS2B01G324400 chr2B_463767478 chr2B 463767478 T T C C 4 synonymous_variant LOW transcript non_Triplet 463765756 463771150 5395 3 0.0556070435588508 RFvsST 10057 695693088 695683032 no 2056.30763959632 TraesCS2B01G324400 chr2B_463770849 chr2B 463770849 T T C C 4 synonymous_variant LOW transcript non_Triplet 463765756 463771150 5395 3 0.0556070435588508 RFvsST 10057 695693088 695683032 no 2056.30763959632 TraesCS2B01G324800 chr2B_464434749 chr2B 464434749 G G A A 4 missense_variant MODERATE transcript unique_Triplet 464432425 464442143 9719 3 0.0308673731865418 RFvsST 10057 695693088 695683032 no 118.707691396856 TraesCS2B01G324800 chr2B_464442116 chr2B 464442116 C C T T 4 synonymous_variant LOW transcript unique_Triplet 464432425 464442143 9719 3 0.0308673731865418 RFvsST 10057 695693088 695683032 no 118.707691396856 TraesCS2B01G324800 chr2B_464442409 chr2B 464442409 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 464432425 464442143 9719 3 0.0308673731865418 RFvsST 10057 695693088 695683032 no 118.707691396856 TraesCS2B01G325100 chr2B_464680234 chr2B 464680234 G G A A 4 missense_variant MODERATE transcript unique_Triplet 464673850 464680415 6566 3 0.045689917758148 RFvsST 10057 695693088 695683032 no 298.46587100973 TraesCS2B01G325100 chr2B_464681297 chr2B 464681297 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 464673850 464680415 6566 3 0.045689917758148 RFvsST 10057 695693088 695683032 no 298.46587100973 TraesCS2B01G325100 chr2B_464680252 chr2B 464680252 C C T T 4 missense_variant MODERATE transcript unique_Triplet 464673850 464680415 6566 3 0.045689917758148 RFvsST 10057 695693088 695683032 no 298.46587100973 TraesCS2B01G325200 chr2B_464681412 chr2B 464681412 C C T T 4 missense_variant MODERATE transcript unique_Triplet 464681324 464684424 3101 1 0.0322476620445018 RFvsST 10057 695693088 695683032 no 181.09720673001 TraesCS2B01G325600 chr2B_465131089 chr2B 465131089 T T A A 4 synonymous_variant LOW transcript unique_Triplet 465125330 465137674 12345 4 0.0324017820980154 RFvsST 10057 695693088 695683032 no 262.710975674307 TraesCS2B01G325600 chr2B_465137252 chr2B 465137252 C C A A 4 synonymous_variant LOW transcript unique_Triplet 465125330 465137674 12345 4 0.0324017820980154 RFvsST 10057 695693088 695683032 no 262.710975674307 TraesCS2B01G325600 chr2B_465125836 chr2B 465125836 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 465125330 465137674 12345 4 0.0324017820980154 RFvsST 10057 695693088 695683032 no 262.710975674307 TraesCS2B01G325600 chr2B_465137450 chr2B 465137450 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 465125330 465137674 12345 4 0.0324017820980154 RFvsST 10057 695693088 695683032 no 262.710975674307 TraesCS2B01G326300 chr2B_466165959 chr2B 466165959 G G A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 466161567 466168090 6524 1 0.0153280196198651 RFvsST 10057 695693088 695683032 no 437.313043485241 TraesCS2B01G326500 chr2B_467476720 chr2B 467476720 C C T T 4 synonymous_variant LOW transcript non_Triplet 467475902 467480596 4695 1 0.0212992545260916 RFvsST 10057 695693088 695683032 no 164.561609789427 TraesCS2B01G328500 chr2B_470913679 chr2B 470913679 A A T T 4 missense_variant MODERATE transcript unique_Triplet 470913043 470916944 3902 1 0.0256278831368529 RFvsST 10057 695693088 695683032 no 89.6193454602116 TraesCS2B01G329100 chr2B_472899096 chr2B 472899096 G T G T 3 synonymous_variant LOW transcript non_Triplet 472898494 472899774 1281 1 0.078064012490242 RFvsST 10057 695693088 695683032 no 328.874023564632 TraesCS2B01G330100 chr2B_474616101 chr2B 474616101 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 474615504 474615996 493 2 0.405679513184584 RFvsST 10057 695693088 695683032 no 2275.5020739516 TraesCS2B01G330100 chr2B_474615334 chr2B 474615334 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 474615504 474615996 493 2 0.405679513184584 RFvsST 10057 695693088 695683032 no 2275.5020739516 TraesCS2B01G330300 chr2B_474856433 chr2B 474856433 T T G G 4 missense_variant MODERATE transcript unique_Triplet 474856351 474858150 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 20.9984127887141 TraesCS2B01G330300 chr2B_474856305 chr2B 474856305 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 474856351 474858150 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 20.9984127887141 TraesCS2B01G330300 chr2B_474857021 chr2B 474857021 G G A A 4 missense_variant MODERATE transcript unique_Triplet 474856351 474858150 1800 3 0.166666666666667 RFvsST 10057 695693088 695683032 no 20.9984127887141 TraesCS2B01G332300 chr2B_475302244 chr2B 475302244 C C G G 4 synonymous_variant LOW transcript unique_Triplet 475302241 475305731 3491 1 0.0286450873675165 RFvsST 10057 695693088 695683032 no 27.6074589214182 TraesCS2B01G333300 chr2B_476560605 chr2B 476560605 C G C G 3 synonymous_variant LOW transcript unique_Triplet 476557425 476560944 3520 1 0.0284090909090909 RFvsST 10057 695693088 695683032 no 28.7729619524819 TraesCS2B01G334400 chr2B_478108271 chr2B 478108271 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 478102029 478108192 6164 2 0.0324464633354964 RFvsST 10057 695693088 695683032 no 340.433718413671 TraesCS2B01G334400 chr2B_478107531 chr2B 478107531 A A G G 4 missense_variant MODERATE transcript unique_Triplet 478102029 478108192 6164 2 0.0324464633354964 RFvsST 10057 695693088 695683032 no 340.433718413671 TraesCS2B01G334500 chr2B_478115883 chr2B 478115883 C C G G 4 missense_variant MODERATE transcript non_Triplet 478113684 478119398 5715 4 0.0699912510936133 RFvsST 10057 695693088 695683032 no 299.510972412145 TraesCS2B01G334500 chr2B_478119525 chr2B 478119525 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 478113684 478119398 5715 4 0.0699912510936133 RFvsST 10057 695693088 695683032 no 299.510972412145 TraesCS2B01G334500 chr2B_478118353 chr2B 478118353 C C T T 4 synonymous_variant LOW transcript non_Triplet 478113684 478119398 5715 4 0.0699912510936133 RFvsST 10057 695693088 695683032 no 299.510972412145 TraesCS2B01G334500 chr2B_478113183 chr2B 478113183 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 478113684 478119398 5715 4 0.0699912510936133 RFvsST 10057 695693088 695683032 no 299.510972412145 TraesCS2B01G334800 chr2B_478188405 chr2B 478188405 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 478188183 478190750 2568 2 0.0778816199376947 RFvsST 10057 695693088 695683032 no 92.5170116456585 TraesCS2B01G334800 chr2B_478188361 chr2B 478188361 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 478188183 478190750 2568 2 0.0778816199376947 RFvsST 10057 695693088 695683032 no 92.5170116456585 TraesCS2B01G335500 chr2B_478914892 chr2B 478914892 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 478909150 478913384 4235 1 0.0236127508854782 RFvsST 10057 695693088 695683032 no 11.4151772452381 TraesCS2B01G336700 chr2B_480932970 chr2B 480932970 A A G G 4 synonymous_variant LOW transcript unique_Triplet 480926128 480933686 7559 1 0.0132292631300437 RFvsST 10057 695693088 695683032 no 25.4147520355971 TraesCS2B01G336800 chr2B_481053720 chr2B 481053720 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 481048720 481053590 4871 2 0.0410593307329091 RFvsST 10057 695693088 695683032 no 206.715236226724 TraesCS2B01G336800 chr2B_481048661 chr2B 481048661 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 481048720 481053590 4871 2 0.0410593307329091 RFvsST 10057 695693088 695683032 no 206.715236226724 TraesCS2B01G337200 chr2B_481626768 chr2B 481626768 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 481628558 481629354 797 1 0.125470514429109 RFvsST 10057 695693088 695683032 no 427.58355520226 TraesCS2B01G337900 chr2B_482730853 chr2B 482730853 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482731056 482734969 3914 2 0.0510986203372509 RFvsST 10057 695693088 695683032 no 3739.44712392027 TraesCS2B01G337900 chr2B_482730709 chr2B 482730709 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482731056 482734969 3914 2 0.0510986203372509 RFvsST 10057 695693088 695683032 no 3739.44712392027 TraesCS2B01G338900 chr2B_484008106 chr2B 484008106 C C T T 4 missense_variant MODERATE transcript non_Triplet 483996077 484008140 12064 3 0.024867374005305 RFvsST 10057 695693088 695683032 no 23.0896056374118 TraesCS2B01G338900 chr2B_484008152 chr2B 484008152 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 483996077 484008140 12064 3 0.024867374005305 RFvsST 10057 695693088 695683032 no 23.0896056374118 TraesCS2B01G338900 chr2B_484000267 chr2B 484000267 G G A A 4 synonymous_variant LOW transcript non_Triplet 483996077 484008140 12064 3 0.024867374005305 RFvsST 10057 695693088 695683032 no 23.0896056374118 TraesCS2B01G339300 chr2B_484605542 chr2B 484605542 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 484608524 484608832 309 2 0.647249190938511 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G339300 chr2B_484605389 chr2B 484605389 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 484608524 484608832 309 2 0.647249190938511 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G339600 chr2B_484929722 chr2B 484929722 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 484929848 484934459 4612 2 0.0433651344319167 RFvsST 10057 695693088 695683032 no 594.269132904318 TraesCS2B01G339600 chr2B_484930708 chr2B 484930708 C C T T 4 synonymous_variant LOW transcript unique_Triplet 484929848 484934459 4612 2 0.0433651344319167 RFvsST 10057 695693088 695683032 no 594.269132904318 TraesCS2B01G339700 chr2B_485040252 chr2B 485040252 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 485040280 485046043 5764 2 0.0346981263011797 RFvsST 10057 695693088 695683032 no 22.3154361551725 TraesCS2B01G339700 chr2B_485046081 chr2B 485046081 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 485040280 485046043 5764 2 0.0346981263011797 RFvsST 10057 695693088 695683032 no 22.3154361551725 TraesCS2B01G339800 chr2B_485162309 chr2B 485162309 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 485161235 485162090 856 1 0.116822429906542 RFvsST 10057 695693088 695683032 no 525.88352036958 TraesCS2B01G340200 chr2B_485756248 chr2B 485756248 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 485750011 485751411 1401 1 0.0713775874375446 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G340400 chr2B_485896027 chr2B 485896027 A A G G 4 missense_variant MODERATE transcript unique_Triplet 485893580 485896244 2665 1 0.0375234521575985 RFvsST 10057 695693088 695683032 no 90.4561407128683 TraesCS2B01G340500 chr2B_485923689 chr2B 485923689 C C A A 4 missense_variant MODERATE transcript unique_Triplet 485923544 485927983 4440 2 0.045045045045045 RFvsST 10057 695693088 695683032 no 564.623138309041 TraesCS2B01G340500 chr2B_485928021 chr2B 485928021 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 485923544 485927983 4440 2 0.045045045045045 RFvsST 10057 695693088 695683032 no 564.623138309041 TraesCS2B01G340900 chr2B_486584019 chr2B 486584019 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 486584930 486589443 4514 1 0.0221533008418254 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G341200 chr2B_486844372 chr2B 486844372 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 486841138 486844298 3161 3 0.0949066751028156 RFvsST 10057 695693088 695683032 no 136.430763920558 TraesCS2B01G341200 chr2B_486842532 chr2B 486842532 A A G G 4 synonymous_variant LOW transcript non_Triplet 486841138 486844298 3161 3 0.0949066751028156 RFvsST 10057 695693088 695683032 no 136.430763920558 TraesCS2B01G341200 chr2B_486844293 chr2B 486844293 T T A A 4 missense_variant MODERATE transcript non_Triplet 486841138 486844298 3161 3 0.0949066751028156 RFvsST 10057 695693088 695683032 no 136.430763920558 TraesCS2B01G344400 chr2B_491023822 chr2B 491023822 G G A A 4 missense_variant MODERATE transcript unique_Triplet 491023725 491025140 1416 1 0.0706214689265537 RFvsST 10057 695693088 695683032 no 130.587319182319 TraesCS2B01G344800 chr2B_491354337 chr2B 491354337 A A G G 4 missense_variant MODERATE transcript unique_Triplet 491354251 491355108 858 2 0.233100233100233 RFvsST 10057 695693088 695683032 no 73.9482195862072 TraesCS2B01G344800 chr2B_491354797 chr2B 491354797 A A G G 4 synonymous_variant LOW transcript unique_Triplet 491354251 491355108 858 2 0.233100233100233 RFvsST 10057 695693088 695683032 no 73.9482195862072 TraesCS2B01G345100 chr2B_492088174 chr2B 492088174 T T C C 4 synonymous_variant LOW transcript non_Triplet 492088025 492088900 876 1 0.114155251141553 RFvsST 10057 695693088 695683032 no 138.034354509215 TraesCS2B01G345500 chr2B_492285768 chr2B 492285768 G G A A 4 synonymous_variant LOW transcript unique_Triplet 492283721 492287616 3896 1 0.0256673511293635 RFvsST 10057 695693088 695683032 no 90.565975825844 TraesCS2B01G345700 chr2B_492617270 chr2B 492617270 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 492615161 492615913 753 1 0.132802124833997 RFvsST 10057 695693088 695683032 no 74.5484573635329 TraesCS2B01G346200 chr2B_492954130 chr2B 492954130 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 492954199 492958211 4013 5 0.124595066035385 RFvsST 10057 695693088 695683032 no 369.043255984327 TraesCS2B01G346200 chr2B_492957903 chr2B 492957903 C C G G 4 missense_variant MODERATE transcript unique_Triplet 492954199 492958211 4013 5 0.124595066035385 RFvsST 10057 695693088 695683032 no 369.043255984327 TraesCS2B01G346200 chr2B_492958269 chr2B 492958269 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 492954199 492958211 4013 5 0.124595066035385 RFvsST 10057 695693088 695683032 no 369.043255984327 TraesCS2B01G346200 chr2B_492958268 chr2B 492958268 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 492954199 492958211 4013 5 0.124595066035385 RFvsST 10057 695693088 695683032 no 369.043255984327 TraesCS2B01G346200 chr2B_492954166 chr2B 492954166 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 492954199 492958211 4013 5 0.124595066035385 RFvsST 10057 695693088 695683032 no 369.043255984327 TraesCS2B01G346500 chr2B_493252139 chr2B 493252139 C C G G 4 missense_variant MODERATE transcript unique_Triplet 493251541 493259946 8406 1 0.0118962645729241 RFvsST 10057 695693088 695683032 no 42.6305745417407 TraesCS2B01G346700 chr2B_493562461 chr2B 493562461 C C A A 4 synonymous_variant LOW transcript unique_Triplet 493560361 493564730 4370 3 0.068649885583524 RFvsST 10057 695693088 695683032 no 124.37868818302 TraesCS2B01G346700 chr2B_493561518 chr2B 493561518 G G T T 4 missense_variant MODERATE transcript unique_Triplet 493560361 493564730 4370 3 0.068649885583524 RFvsST 10057 695693088 695683032 no 124.37868818302 TraesCS2B01G346700 chr2B_493564809 chr2B 493564809 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 493560361 493564730 4370 3 0.068649885583524 RFvsST 10057 695693088 695683032 no 124.37868818302 TraesCS2B01G346800 chr2B_493566324 chr2B 493566324 T T C C 4 synonymous_variant LOW transcript unique_Triplet 493566282 493567289 1008 1 0.0992063492063492 RFvsST 10057 695693088 695683032 no 107.653738468567 TraesCS2B01G347700 chr2B_494288834 chr2B 494288834 T T C C 4 missense_variant MODERATE transcript unique_Triplet 494285639 494289332 3694 1 0.0270709258256632 RFvsST 10057 695693088 695683032 no 254.845472089113 TraesCS2B01G351500 chr2B_500455207 chr2B 500455207 C T C T 3 missense_variant MODERATE transcript unique_Triplet 500454683 500455219 537 1 0.186219739292365 RFvsST 10057 695693088 695683032 no 152.713047852528 TraesCS2B01G352400 chr2B_503452499 chr2B 503452499 G G C C 4 missense_variant MODERATE transcript unique_Triplet 503452476 503454047 1572 1 0.0636132315521628 RFvsST 10057 695693088 695683032 no 310.94729035823 TraesCS2B01G357600 chr2B_510592189 chr2B 510592189 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 510588486 510592033 3548 1 0.028184892897407 RFvsST 10057 695693088 695683032 no 273.171713509449 TraesCS2B01G358700 chr2B_511283320 chr2B 511283320 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 511279040 511279696 657 1 0.15220700152207 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G359400 chr2B_512909311 chr2B 512909311 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 512909195 512910997 1803 1 0.0554631170271769 RFvsST 10057 695693088 695683032 no 108.308160668671 TraesCS2B01G359600 chr2B_513252755 chr2B 513252755 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513252763 513254355 1593 2 0.125549278091651 RFvsST 10057 695693088 695683032 no 139.057779298372 TraesCS2B01G359600 chr2B_513253222 chr2B 513253222 C C G G 4 synonymous_variant LOW transcript unique_Triplet 513252763 513254355 1593 2 0.125549278091651 RFvsST 10057 695693088 695683032 no 139.057779298372 TraesCS2B01G360400 chr2B_513497475 chr2B 513497475 G G C C 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497409 chr2B 513497409 C C G G 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497319 chr2B 513497319 A A G G 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497130 chr2B 513497130 G G T T 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497028 chr2B 513497028 A A G G 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497108 chr2B 513497108 A A C C 4 missense_variant MODERATE transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497835 chr2B 513497835 C C T T 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513496884 chr2B 513496884 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513498399 chr2B 513498399 G G T T 4 missense_variant MODERATE transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497286 chr2B 513497286 T T C C 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513501116 chr2B 513501116 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513498290 chr2B 513498290 T T C C 4 missense_variant MODERATE transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497289 chr2B 513497289 T T C C 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G360400 chr2B_513497058 chr2B 513497058 A A G G 4 synonymous_variant LOW transcript unique_Triplet 513496935 513500917 3983 14 0.351493848857645 RFvsST 10057 695693088 695683032 no 828.268907606941 TraesCS2B01G363000 chr2B_517384452 chr2B 517384452 T T A A 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 517381583 517384916 3334 1 0.02999400119976 RFvsST 10057 695693088 695683032 no 614.376190515238 TraesCS2B01G363200 chr2B_517600506 chr2B 517600506 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 517596231 517600492 4262 3 0.0703894885030502 RFvsST 10057 695693088 695683032 no 55.7172144411063 TraesCS2B01G363200 chr2B_517596202 chr2B 517596202 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 517596231 517600492 4262 3 0.0703894885030502 RFvsST 10057 695693088 695683032 no 55.7172144411063 TraesCS2B01G363200 chr2B_517596275 chr2B 517596275 C C T T 4 synonymous_variant LOW transcript unique_Triplet 517596231 517600492 4262 3 0.0703894885030502 RFvsST 10057 695693088 695683032 no 55.7172144411063 TraesCS2B01G363800 chr2B_518047945 chr2B 518047945 G G C C 4 missense_variant MODERATE transcript unique_Triplet 518045710 518050535 4826 1 0.0207210940737671 RFvsST 10057 695693088 695683032 no 26.5474497071244 TraesCS2B01G364400 chr2B_518740992 chr2B 518740992 G G A A 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741683 chr2B 518741683 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741424 chr2B 518741424 C C A A 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518740437 chr2B 518740437 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741136 chr2B 518741136 G G A A 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741070 chr2B 518741070 T T G G 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741771 chr2B 518741771 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741433 chr2B 518741433 T T C C 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741626 chr2B 518741626 G G T T 4 missense_variant MODERATE transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741583 chr2B 518741583 G G T T 4 synonymous_variant LOW transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518739915 chr2B 518739915 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741731 chr2B 518741731 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518741897 chr2B 518741897 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364400 chr2B_518739930 chr2B 518739930 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 518740858 518741637 780 14 1.79487179487179 RFvsST 10057 695693088 695683032 no 143.971710234911 TraesCS2B01G364500 chr2B_518745062 chr2B 518745062 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 518744900 518749246 4347 1 0.0230043708304578 RFvsST 10057 695693088 695683032 no 37.2080221603378 TraesCS2B01G364800 chr2B_519015208 chr2B 519015208 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 519014782 519017631 2850 1 0.0350877192982456 RFvsST 10057 695693088 695683032 no 203.49078460902 TraesCS2B01G364900 chr2B_519029632 chr2B 519029632 A A G G 4 missense_variant MODERATE transcript unique_Triplet 519024886 519031189 6304 1 0.0158629441624365 RFvsST 10057 695693088 695683032 no 54.700135494834 TraesCS2B01G365100 chr2B_519180180 chr2B 519180180 G A G A 3 synonymous_variant LOW transcript unique_Triplet 519177636 519180534 2899 1 0.034494653328734 RFvsST 10057 695693088 695683032 no 119.488664617827 TraesCS2B01G365500 chr2B_520925333 chr2B 520925333 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 520918352 520920591 2240 3 0.133928571428571 RFvsST 10057 695693088 695683032 no 137.061575698194 TraesCS2B01G365500 chr2B_520919288 chr2B 520919288 C C T T 4 missense_variant MODERATE transcript non_Triplet 520918352 520920591 2240 3 0.133928571428571 RFvsST 10057 695693088 695683032 no 137.061575698194 TraesCS2B01G365500 chr2B_520920623 chr2B 520920623 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 520918352 520920591 2240 3 0.133928571428571 RFvsST 10057 695693088 695683032 no 137.061575698194 TraesCS2B01G365700 chr2B_521333031 chr2B 521333031 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521333062 chr2B 521333062 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521332780 chr2B 521332780 C C T T 4 synonymous_variant LOW transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521331393 chr2B 521331393 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521332687 chr2B 521332687 C C T T 4 synonymous_variant LOW transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521332376 chr2B 521332376 A A G G 4 start_lost HIGH transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365700 chr2B_521331410 chr2B 521331410 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 521332376 521332852 477 7 1.46750524109015 RFvsST 10057 695693088 695683032 no 99.721293350541 TraesCS2B01G365800 chr2B_521516615 chr2B 521516615 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 521512786 521513178 393 1 0.254452926208651 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G365900 chr2B_521516765 chr2B 521516765 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 521516644 521518137 1494 2 0.133868808567604 RFvsST 10057 695693088 695683032 no 186.1091446428 TraesCS2B01G365900 chr2B_521516991 chr2B 521516991 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 521516644 521518137 1494 2 0.133868808567604 RFvsST 10057 695693088 695683032 no 186.1091446428 TraesCS2B01G366800 chr2B_523086167 chr2B 523086167 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 523082327 523084629 2303 1 0.0434216239687364 RFvsST 10057 695693088 695683032 no 101.255667615216 TraesCS2B01G366900 chr2B_523085411 chr2B 523085411 T T C C 4 synonymous_variant LOW transcript unique_Triplet 523085187 523087661 2475 1 0.0404040404040404 RFvsST 10057 695693088 695683032 no 1890.26344243599 TraesCS2B01G367100 chr2B_523263236 chr2B 523263236 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 523264198 523265869 1672 2 0.119617224880383 RFvsST 10057 695693088 695683032 no 55.1658129171707 TraesCS2B01G367100 chr2B_523265715 chr2B 523265715 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 523264198 523265869 1672 2 0.119617224880383 RFvsST 10057 695693088 695683032 no 55.1658129171707 TraesCS2B01G367300 chr2B_523761630 chr2B 523761630 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 523760570 523761431 862 1 0.116009280742459 RFvsST 10057 695693088 695683032 no 1287.85509284181 TraesCS2B01G367500 chr2B_524008245 chr2B 524008245 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 524002630 524003274 645 1 0.155038759689922 RFvsST 10057 695693088 695683032 no 191.054946047503 TraesCS2B01G367600 chr2B_524009689 chr2B 524009689 A T A T 3 synonymous_variant LOW transcript unique_Triplet 524008750 524025128 16379 2 0.0122107576775139 RFvsST 10057 695693088 695683032 no 70.6350926397179 TraesCS2B01G367600 chr2B_524014450 chr2B 524014450 T T G G 4 synonymous_variant LOW transcript unique_Triplet 524008750 524025128 16379 2 0.0122107576775139 RFvsST 10057 695693088 695683032 no 70.6350926397179 TraesCS2B01G367900 chr2B_524178811 chr2B 524178811 G G C C 4 missense_variant MODERATE transcript unique_Triplet 524176220 524183318 7099 1 0.0140864910550782 RFvsST 10057 695693088 695683032 no 348.458106033747 TraesCS2B01G368000 chr2B_525074559 chr2B 525074559 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 525074720 525083975 9256 1 0.0108038029386344 RFvsST 10057 695693088 695683032 no 132.561475846474 TraesCS2B01G368200 chr2B_525518325 chr2B 525518325 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 525518717 525522591 3875 1 0.0258064516129032 RFvsST 10057 695693088 695683032 no 222.746607519527 TraesCS2B01G370500 chr2B_528471745 chr2B 528471745 C C T T 4 missense_variant MODERATE transcript non_Triplet 528470517 528472116 1600 1 0.0625 RFvsST 10057 695693088 695683032 no 12.6178633694025 TraesCS2B01G371200 chr2B_529263289 chr2B 529263289 G A G A 3 synonymous_variant LOW transcript unique_Triplet 529262820 529268801 5982 2 0.0334336342360415 RFvsST 10057 695693088 695683032 no 6.48028161809799 TraesCS2B01G371200 chr2B_529262820 chr2B 529262820 C T C T 3 splice_region_variant&stop_retained_variant LOW transcript unique_Triplet 529262820 529268801 5982 2 0.0334336342360415 RFvsST 10057 695693088 695683032 no 6.48028161809799 TraesCS2B01G371400 chr2B_529694057 chr2B 529694057 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 529693675 529697713 4039 1 0.0247586036147561 RFvsST 10057 695693088 695683032 no 56.5151638460237 TraesCS2B01G373400 chr2B_532082137 chr2B 532082137 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 532078818 532081221 2404 1 0.0415973377703827 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G373500 chr2B_532082221 chr2B 532082221 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 532082161 532089486 7326 1 0.0136500136500137 RFvsST 10057 695693088 695683032 no 1.99821109268859 TraesCS2B01G373600 chr2B_532092788 chr2B 532092788 A G A G 3 synonymous_variant LOW transcript unique_Triplet 532091050 532096596 5547 2 0.0360555255092843 RFvsST 10057 695693088 695683032 no 687.504354814044 TraesCS2B01G373600 chr2B_532091712 chr2B 532091712 A C A C 3 missense_variant MODERATE transcript unique_Triplet 532091050 532096596 5547 2 0.0360555255092843 RFvsST 10057 695693088 695683032 no 687.504354814044 TraesCS2B01G374100 chr2B_534233479 chr2B 534233479 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 534233843 534234308 466 1 0.214592274678112 RFvsST 10057 695693088 695683032 no 38.7552227733109 TraesCS2B01G374600 chr2B_534712541 chr2B 534712541 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 534707497 534712798 5302 3 0.0565824217276499 RFvsST 10057 695693088 695683032 no 429.232080008273 TraesCS2B01G374600 chr2B_534711855 chr2B 534711855 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 534707497 534712798 5302 3 0.0565824217276499 RFvsST 10057 695693088 695683032 no 429.232080008273 TraesCS2B01G374600 chr2B_534712039 chr2B 534712039 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 534707497 534712798 5302 3 0.0565824217276499 RFvsST 10057 695693088 695683032 no 429.232080008273 TraesCS2B01G375100 chr2B_536639227 chr2B 536639227 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536639273 536640267 995 3 0.301507537688442 RFvsST 10057 695693088 695683032 no 376.538699060957 TraesCS2B01G375100 chr2B_536639185 chr2B 536639185 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536639273 536640267 995 3 0.301507537688442 RFvsST 10057 695693088 695683032 no 376.538699060957 TraesCS2B01G375100 chr2B_536639159 chr2B 536639159 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536639273 536640267 995 3 0.301507537688442 RFvsST 10057 695693088 695683032 no 376.538699060957 TraesCS2B01G375200 chr2B_536808141 chr2B 536808141 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536803656 536807358 3703 2 0.0540102619497705 RFvsST 10057 695693088 695683032 no 114.534866964754 TraesCS2B01G375200 chr2B_536807287 chr2B 536807287 T G T G 3 missense_variant MODERATE transcript unique_Triplet 536803656 536807358 3703 2 0.0540102619497705 RFvsST 10057 695693088 695683032 no 114.534866964754 TraesCS2B01G375500 chr2B_538012183 chr2B 538012183 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 538010819 538012174 1356 1 0.0737463126843658 RFvsST 10057 695693088 695683032 no 53.6387096478151 TraesCS2B01G375600 chr2B_538233792 chr2B 538233792 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375600 chr2B_538237568 chr2B 538237568 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375600 chr2B_538236340 chr2B 538236340 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375600 chr2B_538239364 chr2B 538239364 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375600 chr2B_538237481 chr2B 538237481 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375600 chr2B_538236323 chr2B 538236323 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 538233523 538240111 6589 6 0.0910608590074366 RFvsST 10057 695693088 695683032 no 679.076347352213 TraesCS2B01G375700 chr2B_538950898 chr2B 538950898 T G T G 3 missense_variant MODERATE transcript unique_Triplet 538945574 538951125 5552 3 0.0540345821325648 RFvsST 10057 695693088 695683032 no 18.0171218871945 TraesCS2B01G375700 chr2B_538950820 chr2B 538950820 A G A G 3 synonymous_variant LOW transcript unique_Triplet 538945574 538951125 5552 3 0.0540345821325648 RFvsST 10057 695693088 695683032 no 18.0171218871945 TraesCS2B01G375700 chr2B_538948341 chr2B 538948341 C T C T 3 synonymous_variant LOW transcript unique_Triplet 538945574 538951125 5552 3 0.0540345821325648 RFvsST 10057 695693088 695683032 no 18.0171218871945 TraesCS2B01G375800 chr2B_538951218 chr2B 538951218 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 538952455 538954494 2040 2 0.0980392156862745 RFvsST 10057 695693088 695683032 no 7.03032557348835 TraesCS2B01G375800 chr2B_538951425 chr2B 538951425 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 538952455 538954494 2040 2 0.0980392156862745 RFvsST 10057 695693088 695683032 no 7.03032557348835 TraesCS2B01G376100 chr2B_539282825 chr2B 539282825 T C T C 3 missense_variant MODERATE transcript unique_Triplet 539277086 539284200 7115 1 0.0140548137737175 RFvsST 10057 695693088 695683032 no 190.732614384621 TraesCS2B01G376700 chr2B_539647382 chr2B 539647382 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 539648821 539651051 2231 1 0.0448229493500672 RFvsST 10057 695693088 695683032 no 29.5720264611781 TraesCS2B01G376800 chr2B_539704152 chr2B 539704152 T C T C 3 synonymous_variant LOW transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G376800 chr2B_539706065 chr2B 539706065 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G376800 chr2B_539706071 chr2B 539706071 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G376800 chr2B_539705993 chr2B 539705993 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G376800 chr2B_539705984 chr2B 539705984 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G376800 chr2B_539706072 chr2B 539706072 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539703825 539706253 2429 6 0.247015232606011 RFvsST 10057 695693088 695683032 no 141.515702433374 TraesCS2B01G377000 chr2B_539808508 chr2B 539808508 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377000 chr2B_539809476 chr2B 539809476 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377000 chr2B_539804866 chr2B 539804866 A T A T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377000 chr2B_539808538 chr2B 539808538 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377000 chr2B_539804957 chr2B 539804957 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377000 chr2B_539808841 chr2B 539808841 A G A G 3 intron_variant MODIFIER transcript nonUnique_Triplet 539805048 539811397 6350 6 0.094488188976378 RFvsST 10057 695693088 695683032 no 269.124558810141 TraesCS2B01G377200 chr2B_540439184 chr2B 540439184 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 540429706 540434434 4729 3 0.0634383590611123 RFvsST 10057 695693088 695683032 no 37.5425740838842 TraesCS2B01G377200 chr2B_540439170 chr2B 540439170 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 540429706 540434434 4729 3 0.0634383590611123 RFvsST 10057 695693088 695683032 no 37.5425740838842 TraesCS2B01G377200 chr2B_540434890 chr2B 540434890 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 540429706 540434434 4729 3 0.0634383590611123 RFvsST 10057 695693088 695683032 no 37.5425740838842 TraesCS2B01G378200 chr2B_541088883 chr2B 541088883 G G A A 4 synonymous_variant LOW transcript unique_Triplet 541088313 541093178 4866 1 0.020550760378134 RFvsST 10057 695693088 695683032 no 60.1187677511021 TraesCS2B01G378300 chr2B_541095076 chr2B 541095076 A A G G 4 synonymous_variant LOW transcript non_Triplet 541092879 541096721 3843 1 0.0260213374967473 RFvsST 10057 695693088 695683032 no 84.0870972924628 TraesCS2B01G378400 chr2B_541107710 chr2B 541107710 T T C C 4 missense_variant MODERATE transcript unique_Triplet 541104880 541109525 4646 4 0.086095566078347 RFvsST 10057 695693088 695683032 no 337.252603861165 TraesCS2B01G378400 chr2B_541109554 chr2B 541109554 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 541104880 541109525 4646 4 0.086095566078347 RFvsST 10057 695693088 695683032 no 337.252603861165 TraesCS2B01G378400 chr2B_541109703 chr2B 541109703 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 541104880 541109525 4646 4 0.086095566078347 RFvsST 10057 695693088 695683032 no 337.252603861165 TraesCS2B01G378400 chr2B_541109624 chr2B 541109624 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 541104880 541109525 4646 4 0.086095566078347 RFvsST 10057 695693088 695683032 no 337.252603861165 TraesCS2B01G378500 chr2B_541200932 chr2B 541200932 C C G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 541200821 541204831 4011 1 0.024931438544004 RFvsST 10057 695693088 695683032 no 320.854704113531 TraesCS2B01G378700 chr2B_541687801 chr2B 541687801 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 541686988 541687737 750 1 0.133333333333333 RFvsST 10057 695693088 695683032 no 252.018200525158 TraesCS2B01G380000 chr2B_543704833 chr2B 543704833 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 543704912 543706213 1302 1 0.0768049155145929 RFvsST 10057 695693088 695683032 no 630.094233621046 TraesCS2B01G380100 chr2B_543707241 chr2B 543707241 G G A A 4 synonymous_variant LOW transcript unique_Triplet 543706956 543710225 3270 3 0.0917431192660551 RFvsST 10057 695693088 695683032 no 214.51872777311 TraesCS2B01G380100 chr2B_543707709 chr2B 543707709 A A G G 4 synonymous_variant LOW transcript unique_Triplet 543706956 543710225 3270 3 0.0917431192660551 RFvsST 10057 695693088 695683032 no 214.51872777311 TraesCS2B01G380100 chr2B_543709139 chr2B 543709139 G G T T 4 missense_variant MODERATE transcript unique_Triplet 543706956 543710225 3270 3 0.0917431192660551 RFvsST 10057 695693088 695683032 no 214.51872777311 TraesCS2B01G380500 chr2B_544765506 chr2B 544765506 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 544763490 544774801 11312 3 0.0265205091937765 RFvsST 10057 695693088 695683032 no 84.1719985680815 TraesCS2B01G380500 chr2B_544765206 chr2B 544765206 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 544763490 544774801 11312 3 0.0265205091937765 RFvsST 10057 695693088 695683032 no 84.1719985680815 TraesCS2B01G380500 chr2B_544763613 chr2B 544763613 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 544763490 544774801 11312 3 0.0265205091937765 RFvsST 10057 695693088 695683032 no 84.1719985680815 TraesCS2B01G381300 chr2B_545231334 chr2B 545231334 C C T T 4 missense_variant MODERATE transcript unique_Triplet 545230235 545231416 1182 3 0.253807106598985 RFvsST 10057 695693088 695683032 no 227.862813605627 TraesCS2B01G381300 chr2B_545231106 chr2B 545231106 T T C C 4 missense_variant MODERATE transcript unique_Triplet 545230235 545231416 1182 3 0.253807106598985 RFvsST 10057 695693088 695683032 no 227.862813605627 TraesCS2B01G381300 chr2B_545230796 chr2B 545230796 G G A A 4 synonymous_variant LOW transcript unique_Triplet 545230235 545231416 1182 3 0.253807106598985 RFvsST 10057 695693088 695683032 no 227.862813605627 TraesCS2B01G381500 chr2B_545258830 chr2B 545258830 G G A A 4 missense_variant MODERATE transcript unique_Triplet 545258650 545267238 8589 1 0.0116427989288625 RFvsST 10057 695693088 695683032 no 34.0142863236998 TraesCS2B01G381600 chr2B_545267408 chr2B 545267408 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 545268298 545270387 2090 1 0.0478468899521531 RFvsST 10057 695693088 695683032 no 170.251125581876 TraesCS2B01G382000 chr2B_545755634 chr2B 545755634 C C T T 4 synonymous_variant LOW transcript unique_Triplet 545755434 545757202 1769 2 0.113058224985868 RFvsST 10057 695693088 695683032 no 29.3677722646984 TraesCS2B01G382000 chr2B_545755718 chr2B 545755718 C C G G 4 synonymous_variant LOW transcript unique_Triplet 545755434 545757202 1769 2 0.113058224985868 RFvsST 10057 695693088 695683032 no 29.3677722646984 TraesCS2B01G382300 chr2B_546202725 chr2B 546202725 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 546201954 546206933 4980 2 0.0401606425702811 RFvsST 10057 695693088 695683032 no 74.1486447820428 TraesCS2B01G382300 chr2B_546202443 chr2B 546202443 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 546201954 546206933 4980 2 0.0401606425702811 RFvsST 10057 695693088 695683032 no 74.1486447820428 TraesCS2B01G384500 chr2B_548390271 chr2B 548390271 C T C T 3 missense_variant MODERATE transcript unique_Triplet 548389941 548397013 7073 1 0.0141382723031246 RFvsST 10057 695693088 695683032 no 78.3760995391814 TraesCS2B01G389400 chr2B_553168387 chr2B 553168387 C C T T 4 synonymous_variant LOW transcript unique_Triplet 553165300 553168618 3319 1 0.0301295570955107 RFvsST 10057 695693088 695683032 no 436.762529412627 TraesCS2B01G400000 chr2B_568468851 chr2B 568468851 T T C C 4 synonymous_variant LOW transcript unique_Triplet 568467104 568469090 1987 3 0.150981378963261 RFvsST 10057 695693088 695683032 no 158.659781678859 TraesCS2B01G400000 chr2B_568468319 chr2B 568468319 G G T T 4 missense_variant MODERATE transcript unique_Triplet 568467104 568469090 1987 3 0.150981378963261 RFvsST 10057 695693088 695683032 no 158.659781678859 TraesCS2B01G400000 chr2B_568467949 chr2B 568467949 T T C C 4 synonymous_variant LOW transcript unique_Triplet 568467104 568469090 1987 3 0.150981378963261 RFvsST 10057 695693088 695683032 no 158.659781678859 TraesCS2B01G401500 chr2B_569977425 chr2B 569977425 G A G A 3 missense_variant MODERATE transcript non_Triplet 569976240 569981341 5102 1 0.0196001568012544 RFvsST 10057 695693088 695683032 no 408.361955676223 TraesCS2B01G405500 chr2B_573674383 chr2B 573674383 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 573669084 573669931 848 1 0.117924528301887 RFvsST 10057 695693088 695683032 no No_match TraesCS2B01G406100 chr2B_575149258 chr2B 575149258 G G T T 4 synonymous_variant LOW transcript non_Triplet 575145631 575149372 3742 2 0.0534473543559594 RFvsST 10057 695693088 695683032 no 93.9585653356743 TraesCS2B01G406100 chr2B_575149145 chr2B 575149145 C T C T 3 missense_variant MODERATE transcript non_Triplet 575145631 575149372 3742 2 0.0534473543559594 RFvsST 10057 695693088 695683032 no 93.9585653356743 TraesCS2B01G406400 chr2B_575836718 chr2B 575836718 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406400 chr2B_575835254 chr2B 575835254 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406400 chr2B_575836010 chr2B 575836010 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406400 chr2B_575836027 chr2B 575836027 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406400 chr2B_575835640 chr2B 575835640 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406400 chr2B_575835564 chr2B 575835564 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 575835176 575836764 1589 6 0.377595972309629 RFvsST 10057 695693088 695683032 no 532.682069813066 TraesCS2B01G406500 chr2B_575872943 chr2B 575872943 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 575871805 575877504 5700 2 0.0350877192982456 RFvsST 10057 695693088 695683032 no 39.4529515802502 TraesCS2B01G406500 chr2B_575877546 chr2B 575877546 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 575871805 575877504 5700 2 0.0350877192982456 RFvsST 10057 695693088 695683032 no 39.4529515802502 TraesCS2B01G406600 chr2B_575904465 chr2B 575904465 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 575903798 575905111 1314 2 0.15220700152207 RFvsST 10057 695693088 695683032 no 53.374887173781 TraesCS2B01G406600 chr2B_575903969 chr2B 575903969 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 575903798 575905111 1314 2 0.15220700152207 RFvsST 10057 695693088 695683032 no 53.374887173781 TraesCS2B01G406800 chr2B_576092015 chr2B 576092015 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576083378 chr2B 576083378 C C T T 4 synonymous_variant LOW transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576080485 chr2B 576080485 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576086453 chr2B 576086453 T T C C 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576083286 chr2B 576083286 T C T C 3 synonymous_variant LOW transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576082801 chr2B 576082801 C A C A 3 missense_variant MODERATE transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576091668 chr2B 576091668 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G406800 chr2B_576092019 chr2B 576092019 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 576081966 576091559 9594 8 0.0833854492391078 RFvsST 10057 695693088 695683032 no 258.636197953229 TraesCS2B01G407500 chr2B_578598478 chr2B 578598478 G T G T 3 missense_variant MODERATE transcript unique_Triplet 578596549 578601327 4779 2 0.0418497593638837 RFvsST 10057 695693088 695683032 no 249.538321360581 TraesCS2B01G407500 chr2B_578596880 chr2B 578596880 A C A C 3 missense_variant MODERATE transcript unique_Triplet 578596549 578601327 4779 2 0.0418497593638837 RFvsST 10057 695693088 695683032 no 249.538321360581 TraesCS2B01G407600 chr2B_578601422 chr2B 578601422 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 578605119 578605996 878 1 0.113895216400911 RFvsST 10057 695693088 695683032 no 24.4396184375158 TraesCS2B01G407900 chr2B_579575273 chr2B 579575273 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 579571549 579575257 3709 3 0.0808843354003775 RFvsST 10057 695693088 695683032 no 406.96436698929 TraesCS2B01G407900 chr2B_579572044 chr2B 579572044 G C G C 3 missense_variant MODERATE transcript non_Triplet 579571549 579575257 3709 3 0.0808843354003775 RFvsST 10057 695693088 695683032 no 406.96436698929 TraesCS2B01G407900 chr2B_579574786 chr2B 579574786 A T A T 3 missense_variant MODERATE transcript non_Triplet 579571549 579575257 3709 3 0.0808843354003775 RFvsST 10057 695693088 695683032 no 406.96436698929 TraesCS2B01G408300 chr2B_580020456 chr2B 580020456 C C A A 4 synonymous_variant LOW transcript non_Triplet 580005764 580020827 15064 1 0.00663834306956983 RFvsST 10057 695693088 695683032 no 424.040648604281 TraesCS2B01G413500 chr2B_589213629 chr2B 589213629 C C T T 4 synonymous_variant LOW transcript unique_Triplet 589211752 589213647 1896 1 0.0527426160337553 RFvsST 10057 695693088 695683032 no 337.345815409839 TraesCS2B01G415100 chr2B_593640040 chr2B 593640040 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 593640053 593648618 8566 2 0.0233481204763017 RFvsST 10057 695693088 695683032 no 77.1586950633791 TraesCS2B01G415100 chr2B_593647984 chr2B 593647984 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 593640053 593648618 8566 2 0.0233481204763017 RFvsST 10057 695693088 695683032 no 77.1586950633791 TraesCS2B01G415300 chr2B_593658530 chr2B 593658530 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 593658289 593661547 3259 1 0.0306842589751458 RFvsST 10057 695693088 695683032 no 163.633886748555 TraesCS2B01G415400 chr2B_593677994 chr2B 593677994 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 593674569 593677064 2496 1 0.0400641025641026 RFvsST 10057 695693088 695683032 no 494.000990355631 TraesCS2B01G416100 chr2B_594847111 chr2B 594847111 A G A G 3 synonymous_variant LOW transcript unique_Triplet 594845272 594847182 1911 2 0.10465724751439 RFvsST 10057 695693088 695683032 no 362.897035859934 TraesCS2B01G416100 chr2B_594846713 chr2B 594846713 G G T T 4 missense_variant MODERATE transcript unique_Triplet 594845272 594847182 1911 2 0.10465724751439 RFvsST 10057 695693088 695683032 no 362.897035859934 TraesCS2B01G416200 chr2B_594849586 chr2B 594849586 T C T C 3 missense_variant MODERATE transcript unique_Triplet 594847799 594852217 4419 3 0.0678886625933469 RFvsST 10057 695693088 695683032 no 123.655749407957 TraesCS2B01G416200 chr2B_594848254 chr2B 594848254 G A G A 3 missense_variant MODERATE transcript unique_Triplet 594847799 594852217 4419 3 0.0678886625933469 RFvsST 10057 695693088 695683032 no 123.655749407957 TraesCS2B01G416200 chr2B_594850856 chr2B 594850856 T C T C 3 missense_variant MODERATE transcript unique_Triplet 594847799 594852217 4419 3 0.0678886625933469 RFvsST 10057 695693088 695683032 no 123.655749407957 TraesCS2B01G417000 chr2B_596415651 chr2B 596415651 C T C T 3 synonymous_variant LOW transcript unique_Triplet 596413052 596417727 4676 2 0.0427715996578272 RFvsST 10057 695693088 695683032 no 167.505394494454 TraesCS2B01G417000 chr2B_596417681 chr2B 596417681 G A G A 3 missense_variant MODERATE transcript unique_Triplet 596413052 596417727 4676 2 0.0427715996578272 RFvsST 10057 695693088 695683032 no 167.505394494454 TraesCS2B01G417200 chr2B_596653289 chr2B 596653289 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 596652837 596656254 3418 1 0.0292568753657109 RFvsST 10057 695693088 695683032 no 526.506868605031 TraesCS2B01G417700 chr2B_597550972 chr2B 597550972 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 597545641 597550951 5311 3 0.0564865373752589 RFvsST 10057 695693088 695683032 no 103.699544030262 TraesCS2B01G417700 chr2B_597545967 chr2B 597545967 A G A G 3 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 597545641 597550951 5311 3 0.0564865373752589 RFvsST 10057 695693088 695683032 no 103.699544030262 TraesCS2B01G417700 chr2B_597551050 chr2B 597551050 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 597545641 597550951 5311 3 0.0564865373752589 RFvsST 10057 695693088 695683032 no 103.699544030262 TraesCS2B01G418000 chr2B_598660570 chr2B 598660570 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 598658692 598659279 588 1 0.170068027210884 RFvsST 10057 695693088 695683032 no 21.2523902693845 TraesCS2B01G420400 chr2B_602764283 chr2B 602764283 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 602762399 602764394 1996 1 0.0501002004008016 RFvsST 10057 695693088 695683032 no 171.043978603478 TraesCS2B01G428300 chr2B_615577846 chr2B 615577846 C T C T 3 synonymous_variant LOW transcript non_Triplet 615577811 615579214 1404 3 0.213675213675214 RFvsST 10057 695693088 695683032 no 660.805120302193 TraesCS2B01G428300 chr2B_615577627 chr2B 615577627 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 615577811 615579214 1404 3 0.213675213675214 RFvsST 10057 695693088 695683032 no 660.805120302193 TraesCS2B01G428300 chr2B_615578374 chr2B 615578374 C T C T 3 synonymous_variant LOW transcript non_Triplet 615577811 615579214 1404 3 0.213675213675214 RFvsST 10057 695693088 695683032 no 660.805120302193 TraesCS2B01G428500 chr2B_615737332 chr2B 615737332 G G A A 4 synonymous_variant LOW transcript non_Triplet 615736022 615739998 3977 3 0.0754337440281619 RFvsST 10057 695693088 695683032 no 669.401730343919 TraesCS2B01G428500 chr2B_615736545 chr2B 615736545 T T C C 4 missense_variant MODERATE transcript non_Triplet 615736022 615739998 3977 3 0.0754337440281619 RFvsST 10057 695693088 695683032 no 669.401730343919 TraesCS2B01G428500 chr2B_615737434 chr2B 615737434 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 615736022 615739998 3977 3 0.0754337440281619 RFvsST 10057 695693088 695683032 no 669.401730343919 TraesCS2B01G428700 chr2B_615798086 chr2B 615798086 G C G C 3 missense_variant MODERATE transcript non_Triplet 615797429 615798832 1404 1 0.0712250712250712 RFvsST 10057 695693088 695683032 no 172.086840108926 TraesCS2B01G429100 chr2B_616475530 chr2B 616475530 T C T C 3 intron_variant MODIFIER transcript nonUnique_Triplet 616474097 616475628 1532 1 0.0652741514360313 RFvsST 10057 695693088 695683032 no 84.5837919684922 TraesCS2B01G429200 chr2B_616495816 chr2B 616495816 C C A A 4 synonymous_variant LOW transcript unique_Triplet 616494471 616499943 5473 2 0.0365430294171387 RFvsST 10057 695693088 695683032 no 269.903567180294 TraesCS2B01G429200 chr2B_616495945 chr2B 616495945 T C T C 3 synonymous_variant LOW transcript unique_Triplet 616494471 616499943 5473 2 0.0365430294171387 RFvsST 10057 695693088 695683032 no 269.903567180294 TraesCS2B01G435600 chr2B_625918740 chr2B 625918740 G G A A 4 missense_variant MODERATE transcript unique_Triplet 625917098 625919872 2775 1 0.036036036036036 RFvsST 10057 695693088 695683032 no 166.613355849174 TraesCS2B01G438400 chr2B_630730211 chr2B 630730211 G A G A 3 missense_variant MODERATE transcript unique_Triplet 630728709 630733203 4495 1 0.0222469410456062 RFvsST 10057 695693088 695683032 no 78.6360731587401 TraesCS2B01G441100 chr2B_632920884 chr2B 632920884 C G A G,A 6 downstream_gene_variant MODIFIER transcript unique_Triplet 632916578 632920753 4176 4 0.0957854406130268 RFvsST 10057 695693088 695683032 no 69.4045919818391 TraesCS2B01G441100 chr2B_632916447 chr2B 632916447 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 632916578 632920753 4176 4 0.0957854406130268 RFvsST 10057 695693088 695683032 no 69.4045919818391 TraesCS2B01G441100 chr2B_632918974 chr2B 632918974 C C G G 4 synonymous_variant LOW transcript unique_Triplet 632916578 632920753 4176 4 0.0957854406130268 RFvsST 10057 695693088 695683032 no 69.4045919818391 TraesCS2B01G441100 chr2B_632916324 chr2B 632916324 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 632916578 632920753 4176 4 0.0957854406130268 RFvsST 10057 695693088 695683032 no 69.4045919818391 TraesCS2B01G446200 chr2B_638974195 chr2B 638974195 G C G C 3 synonymous_variant LOW transcript unique_Triplet 638972750 638974373 1624 1 0.061576354679803 RFvsST 10057 695693088 695683032 no 61.5911093487014 TraesCS2B01G446300 chr2B_639187088 chr2B 639187088 T C T C 3 synonymous_variant LOW transcript unique_Triplet 639184216 639187381 3166 2 0.0631711939355654 RFvsST 10057 695693088 695683032 no 173.923895723873 TraesCS2B01G446300 chr2B_639184107 chr2B 639184107 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 639184216 639187381 3166 2 0.0631711939355654 RFvsST 10057 695693088 695683032 no 173.923895723873 TraesCS2B01G447400 chr2B_640341153 chr2B 640341153 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 640334691 640340916 6226 2 0.032123353678124 RFvsST 10057 695693088 695683032 no 245.127215798664 TraesCS2B01G447400 chr2B_640334639 chr2B 640334639 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 640334691 640340916 6226 2 0.032123353678124 RFvsST 10057 695693088 695683032 no 245.127215798664 TraesCS2B01G448000 chr2B_640691822 chr2B 640691822 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 640688141 640691762 3622 1 0.0276090557702927 RFvsST 10057 695693088 695683032 no 325.241589837384 TraesCS2B01G448100 chr2B_640764732 chr2B 640764732 C C T T 4 missense_variant MODERATE transcript unique_Triplet 640764718 640765377 660 1 0.151515151515152 RFvsST 10057 695693088 695683032 no 29.6408931795493 TraesCS2B01G448200 chr2B_640984014 chr2B 640984014 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 640983814 640990797 6984 1 0.0143184421534937 RFvsST 10057 695693088 695683032 no 372.348422906973 TraesCS2B01G449200 chr2B_641940658 chr2B 641940658 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641940326 641943114 2789 4 0.143420580853352 RFvsST 10057 695693088 695683032 no 524.97044290758 TraesCS2B01G449200 chr2B_641941610 chr2B 641941610 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641940326 641943114 2789 4 0.143420580853352 RFvsST 10057 695693088 695683032 no 524.97044290758 TraesCS2B01G449200 chr2B_641940210 chr2B 641940210 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641940326 641943114 2789 4 0.143420580853352 RFvsST 10057 695693088 695683032 no 524.97044290758 TraesCS2B01G449200 chr2B_641940511 chr2B 641940511 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641940326 641943114 2789 4 0.143420580853352 RFvsST 10057 695693088 695683032 no 524.97044290758 TraesCS2B01G450700 chr2B_643683526 chr2B 643683526 A A G G 4 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643683490 chr2B 643683490 T T C C 4 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643684175 chr2B 643684175 A A G G 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643684435 chr2B 643684435 A A G G 4 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643682925 chr2B 643682925 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643685687 chr2B 643685687 G G A A 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643683739 chr2B 643683739 G G A A 4 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643685822 chr2B 643685822 G T G T 3 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643684529 chr2B 643684529 G G A A 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643684667 chr2B 643684667 G G A A 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643683689 chr2B 643683689 A A C C 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643684244 chr2B 643684244 G G A A 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643682899 chr2B 643682899 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643685096 chr2B 643685096 T T C C 4 synonymous_variant LOW transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643685086 chr2B 643685086 C T C T 3 missense_variant MODERATE transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450700 chr2B_643683524 chr2B 643683524 G G T T 4 stop_gained HIGH transcript unique_Triplet 643683275 643685956 2682 16 0.596569724086503 RFvsST 10057 695693088 695683032 no 486.036744791143 TraesCS2B01G450800 chr2B_644144689 chr2B 644144689 C C G G 4 synonymous_variant LOW transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G450800 chr2B_644150027 chr2B 644150027 A A G G 4 synonymous_variant LOW transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G450800 chr2B_644149270 chr2B 644149270 G G A A 4 synonymous_variant LOW transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G450800 chr2B_644144610 chr2B 644144610 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G450800 chr2B_644150054 chr2B 644150054 T T G G 4 synonymous_variant LOW transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G450800 chr2B_644146058 chr2B 644146058 T T C C 4 synonymous_variant LOW transcript unique_Triplet 644144675 644150345 5671 6 0.105801445953095 RFvsST 10057 695693088 695683032 no 541.025697206684 TraesCS2B01G451600 chr2B_645305378 chr2B 645305378 A A G G 4 missense_variant MODERATE transcript non_Triplet 645302238 645305748 3511 1 0.0284819139846198 RFvsST 10057 695693088 695683032 no 31.9713297175446 TraesCS2B01G451700 chr2B_645309795 chr2B 645309795 G G A A 4 missense_variant MODERATE transcript non_Triplet 645307339 645309871 2533 3 0.118436636399526 RFvsST 10057 695693088 695683032 no 230.794541167892 TraesCS2B01G451700 chr2B_645305775 chr2B 645305775 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 645307339 645309871 2533 3 0.118436636399526 RFvsST 10057 695693088 695683032 no 230.794541167892 TraesCS2B01G451700 chr2B_645307326 chr2B 645307326 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 645307339 645309871 2533 3 0.118436636399526 RFvsST 10057 695693088 695683032 no 230.794541167892 TraesCS2B01G452200 chr2B_646210391 chr2B 646210391 T T C C 4 missense_variant MODERATE transcript unique_Triplet 646210162 646214150 3989 3 0.0752068187515668 RFvsST 10057 695693088 695683032 no 35.7199910595678 TraesCS2B01G452200 chr2B_646214826 chr2B 646214826 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 646210162 646214150 3989 3 0.0752068187515668 RFvsST 10057 695693088 695683032 no 35.7199910595678 TraesCS2B01G452200 chr2B_646214953 chr2B 646214953 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 646210162 646214150 3989 3 0.0752068187515668 RFvsST 10057 695693088 695683032 no 35.7199910595678 TraesCS2B01G452900 chr2B_646687625 chr2B 646687625 G G T T 4 missense_variant MODERATE transcript unique_Triplet 646687622 646690450 2829 1 0.0353481795687522 RFvsST 10057 695693088 695683032 no 311.204928439144 TraesCS2B01G453000 chr2B_646957190 chr2B 646957190 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 646957199 646959363 2165 1 0.046189376443418 RFvsST 10057 695693088 695683032 no 201.970540206438 TraesCS2B01G453300 chr2B_647109047 chr2B 647109047 C C G G 4 missense_variant MODERATE transcript unique_Triplet 647100766 647109353 8588 1 0.0116441546343735 RFvsST 10057 695693088 695683032 no 65.0498837973994 TraesCS2B01G453400 chr2B_647112074 chr2B 647112074 A A G G 4 missense_variant MODERATE transcript non_Triplet 647109397 647115807 6411 1 0.0155981906098893 RFvsST 10057 695693088 695683032 no 347.241567660997 TraesCS2B01G454000 chr2B_648083689 chr2B 648083689 C T C T 3 synonymous_variant LOW transcript unique_Triplet 648073775 648084381 10607 2 0.0188554728009805 RFvsST 10057 695693088 695683032 no 43.0006458339424 TraesCS2B01G454000 chr2B_648083704 chr2B 648083704 T C T C 3 synonymous_variant LOW transcript unique_Triplet 648073775 648084381 10607 2 0.0188554728009805 RFvsST 10057 695693088 695683032 no 43.0006458339424 TraesCS2B01G454100 chr2B_648479773 chr2B 648479773 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 648481121 648482881 1761 2 0.113571834185122 RFvsST 10057 695693088 695683032 no 66.0472839249621 TraesCS2B01G454100 chr2B_648483830 chr2B 648483830 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 648481121 648482881 1761 2 0.113571834185122 RFvsST 10057 695693088 695683032 no 66.0472839249621 TraesCS2B01G454200 chr2B_648484991 chr2B 648484991 T T C C 4 missense_variant MODERATE transcript unique_Triplet 648483855 648485054 1200 1 0.0833333333333333 RFvsST 10057 695693088 695683032 no 124.935582875242 TraesCS2B01G454300 chr2B_648652970 chr2B 648652970 C C A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 648652754 648653804 1051 2 0.190294957183635 RFvsST 10057 695693088 695683032 no 124.617307421748 TraesCS2B01G454300 chr2B_648653852 chr2B 648653852 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 648652754 648653804 1051 2 0.190294957183635 RFvsST 10057 695693088 695683032 no 124.617307421748 TraesCS2B01G587900 chr2B_774956679 chr2B 774956679 C T C T 3 missense_variant MODERATE transcript unique_Triplet 774953152 774959023 5872 3 0.0510899182561308 RFvsST 727679866 801216973 73537108 no 428.464061277557 TraesCS2B01G587900 chr2B_774958909 chr2B 774958909 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 774953152 774959023 5872 3 0.0510899182561308 RFvsST 727679866 801216973 73537108 no 428.464061277557 TraesCS2B01G587900 chr2B_774958884 chr2B 774958884 A C A C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 774953152 774959023 5872 3 0.0510899182561308 RFvsST 727679866 801216973 73537108 no 428.464061277557 TraesCS2B01G588400 chr2B_775169445 chr2B 775169445 T C T C 3 synonymous_variant LOW transcript unique_Triplet 775168731 775173557 4827 1 0.0207168013258753 RFvsST 727679866 801216973 73537108 no 82.560581236453 TraesCS2B01G588600 chr2B_775336741 chr2B 775336741 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775335080 775336521 1442 1 0.0693481276005548 RFvsST 727679866 801216973 73537108 no 780.331039759138 TraesCS2B01G588900 chr2B_775371195 chr2B 775371195 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775367144 775371133 3990 1 0.025062656641604 RFvsST 727679866 801216973 73537108 no 58.4268161631513 TraesCS2B01G589800 chr2B_776214292 chr2B 776214292 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 776219037 776222836 3800 4 0.105263157894737 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G589800 chr2B_776214224 chr2B 776214224 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 776219037 776222836 3800 4 0.105263157894737 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G589800 chr2B_776214200 chr2B 776214200 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 776219037 776222836 3800 4 0.105263157894737 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G589800 chr2B_776214087 chr2B 776214087 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 776219037 776222836 3800 4 0.105263157894737 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G590900 chr2B_776696664 chr2B 776696664 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 776700266 776701609 1344 3 0.223214285714286 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G590900 chr2B_776696603 chr2B 776696603 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 776700266 776701609 1344 3 0.223214285714286 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G590900 chr2B_776699289 chr2B 776699289 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 776700266 776701609 1344 3 0.223214285714286 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G591300 chr2B_776815851 chr2B 776815851 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 776811916 776815847 3932 1 0.0254323499491353 RFvsST 727679866 801216973 73537108 no 1439.14536277877 TraesCS2B01G591700 chr2B_777114099 chr2B 777114099 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 777114147 777118345 4199 1 0.0238151940938319 RFvsST 727679866 801216973 73537108 no 81.6625597332149 TraesCS2B01G592400 chr2B_777385140 chr2B 777385140 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777375641 chr2B 777375641 A A G G 4 synonymous_variant LOW transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777376132 chr2B 777376132 G G A A 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777375665 chr2B 777375665 C C T T 4 synonymous_variant LOW transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777375618 chr2B 777375618 G G A A 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777384897 chr2B 777384897 C C G G 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777385017 chr2B 777385017 C C T T 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777375580 chr2B 777375580 C C T T 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777385028 chr2B 777385028 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777376229 chr2B 777376229 T T G G 4 synonymous_variant LOW transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777376232 chr2B 777376232 T T C C 4 synonymous_variant LOW transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777375595 chr2B 777375595 C C T T 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777376140 chr2B 777376140 G G A A 4 missense_variant MODERATE transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592400 chr2B_777384171 chr2B 777384171 T T C C 4 intron_variant MODIFIER transcript non_Triplet 777375552 777385022 9471 14 0.147819660014782 RFvsST 727679866 801216973 73537108 no 1186.47466700661 TraesCS2B01G592500 chr2B_777519922 chr2B 777519922 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 777513264 777517454 4191 1 0.0238606537819136 RFvsST 727679866 801216973 73537108 no 642.122934472199 TraesCS2B01G594100 chr2B_778848928 chr2B 778848928 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 778846506 778848511 2006 4 0.199401794616152 RFvsST 727679866 801216973 73537108 no 32.3501188310629 TraesCS2B01G594100 chr2B_778848352 chr2B 778848352 C C A A 4 missense_variant MODERATE transcript non_Triplet 778846506 778848511 2006 4 0.199401794616152 RFvsST 727679866 801216973 73537108 no 32.3501188310629 TraesCS2B01G594100 chr2B_778848862 chr2B 778848862 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 778846506 778848511 2006 4 0.199401794616152 RFvsST 727679866 801216973 73537108 no 32.3501188310629 TraesCS2B01G594100 chr2B_778848388 chr2B 778848388 T T C C 4 synonymous_variant LOW transcript non_Triplet 778846506 778848511 2006 4 0.199401794616152 RFvsST 727679866 801216973 73537108 no 32.3501188310629 TraesCS2B01G594200 chr2B_778849173 chr2B 778849173 C C A A 4 synonymous_variant LOW transcript unique_Triplet 778848990 778851310 2321 5 0.2154243860405 RFvsST 727679866 801216973 73537108 no 257.810870465078 TraesCS2B01G594200 chr2B_778849035 chr2B 778849035 G G A A 4 synonymous_variant LOW transcript unique_Triplet 778848990 778851310 2321 5 0.2154243860405 RFvsST 727679866 801216973 73537108 no 257.810870465078 TraesCS2B01G594200 chr2B_778849386 chr2B 778849386 T T A A 4 synonymous_variant LOW transcript unique_Triplet 778848990 778851310 2321 5 0.2154243860405 RFvsST 727679866 801216973 73537108 no 257.810870465078 TraesCS2B01G594200 chr2B_778849392 chr2B 778849392 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 778848990 778851310 2321 5 0.2154243860405 RFvsST 727679866 801216973 73537108 no 257.810870465078 TraesCS2B01G594200 chr2B_778849110 chr2B 778849110 T T C C 4 synonymous_variant LOW transcript unique_Triplet 778848990 778851310 2321 5 0.2154243860405 RFvsST 727679866 801216973 73537108 no 257.810870465078 TraesCS2B01G595200 chr2B_779344552 chr2B 779344552 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 779339248 779344166 4919 2 0.0406586704614759 RFvsST 727679866 801216973 73537108 no 84.4337746865734 TraesCS2B01G595200 chr2B_779344494 chr2B 779344494 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 779339248 779344166 4919 2 0.0406586704614759 RFvsST 727679866 801216973 73537108 no 84.4337746865734 TraesCS2B01G595300 chr2B_779347709 chr2B 779347709 G G C C 4 synonymous_variant LOW transcript unique_Triplet 779344608 779347907 3300 4 0.121212121212121 RFvsST 727679866 801216973 73537108 no 178.336695247414 TraesCS2B01G595300 chr2B_779347851 chr2B 779347851 G G C C 4 synonymous_variant LOW transcript unique_Triplet 779344608 779347907 3300 4 0.121212121212121 RFvsST 727679866 801216973 73537108 no 178.336695247414 TraesCS2B01G595300 chr2B_779347893 chr2B 779347893 C C A A 4 synonymous_variant LOW transcript unique_Triplet 779344608 779347907 3300 4 0.121212121212121 RFvsST 727679866 801216973 73537108 no 178.336695247414 TraesCS2B01G595300 chr2B_779347721 chr2B 779347721 T T C C 4 synonymous_variant LOW transcript unique_Triplet 779344608 779347907 3300 4 0.121212121212121 RFvsST 727679866 801216973 73537108 no 178.336695247414 TraesCS2B01G595600 chr2B_779370243 chr2B 779370243 T T A A 4 missense_variant MODERATE transcript unique_Triplet 779367896 779371426 3531 1 0.0283205890682526 RFvsST 727679866 801216973 73537108 no 24.5854391778976 TraesCS2B01G596300 chr2B_779833366 chr2B 779833366 G G A A 4 synonymous_variant LOW transcript unique_Triplet 779832820 779837364 4545 3 0.066006600660066 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G596300 chr2B_779832703 chr2B 779832703 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 779832820 779837364 4545 3 0.066006600660066 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G596300 chr2B_779832579 chr2B 779832579 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 779832820 779837364 4545 3 0.066006600660066 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G596400 chr2B_779852507 chr2B 779852507 A A G G 4 synonymous_variant LOW transcript non_Triplet 779850698 779853534 2837 1 0.0352485019386676 RFvsST 727679866 801216973 73537108 no 34.8644100016904 TraesCS2B01G596500 chr2B_779857694 chr2B 779857694 C C G G 4 missense_variant MODERATE transcript unique_Triplet 779855190 779857699 2510 1 0.0398406374501992 RFvsST 727679866 801216973 73537108 no 98.4964816492036 TraesCS2B01G596600 chr2B_779862197 chr2B 779862197 T T C C 4 synonymous_variant LOW transcript unique_Triplet 779861761 779864217 2457 2 0.0814000814000814 RFvsST 727679866 801216973 73537108 no 42.1494396296883 TraesCS2B01G596600 chr2B_779862194 chr2B 779862194 T T C C 4 synonymous_variant LOW transcript unique_Triplet 779861761 779864217 2457 2 0.0814000814000814 RFvsST 727679866 801216973 73537108 no 42.1494396296883 TraesCS2B01G596900 chr2B_780589928 chr2B 780589928 G C A C,A 6 synonymous_variant LOW transcript unique_Triplet 780586546 780590446 3901 4 0.102537810817739 RFvsST 727679866 801216973 73537108 no 38.0241847089102 TraesCS2B01G596900 chr2B_780590436 chr2B 780590436 C C T T 4 missense_variant MODERATE transcript unique_Triplet 780586546 780590446 3901 4 0.102537810817739 RFvsST 727679866 801216973 73537108 no 38.0241847089102 TraesCS2B01G596900 chr2B_780589904 chr2B 780589904 T C T C 3 synonymous_variant LOW transcript unique_Triplet 780586546 780590446 3901 4 0.102537810817739 RFvsST 727679866 801216973 73537108 no 38.0241847089102 TraesCS2B01G596900 chr2B_780589328 chr2B 780589328 G G C C 4 synonymous_variant LOW transcript unique_Triplet 780586546 780590446 3901 4 0.102537810817739 RFvsST 727679866 801216973 73537108 no 38.0241847089102 TraesCS2B01G597000 chr2B_780590559 chr2B 780590559 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 780594577 780595020 444 2 0.45045045045045 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G597000 chr2B_780590568 chr2B 780590568 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 780594577 780595020 444 2 0.45045045045045 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G597300 chr2B_780779566 chr2B 780779566 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779176 chr2B 780779176 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779676 chr2B 780779676 C C T T 4 synonymous_variant LOW transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779668 chr2B 780779668 G G A A 4 missense_variant MODERATE transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779198 chr2B 780779198 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780782765 chr2B 780782765 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779139 chr2B 780779139 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780780916 chr2B 780780916 C C T T 4 synonymous_variant LOW transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G597300 chr2B_780779449 chr2B 780779449 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 780779457 780782769 3313 9 0.271657108361002 RFvsST 727679866 801216973 73537108 no 240.964904713515 TraesCS2B01G599200 chr2B_781832832 chr2B 781832832 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 781826770 781828446 1677 4 0.238521168753727 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G599200 chr2B_781830292 chr2B 781830292 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 781826770 781828446 1677 4 0.238521168753727 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G599200 chr2B_781830287 chr2B 781830287 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 781826770 781828446 1677 4 0.238521168753727 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G599200 chr2B_781830247 chr2B 781830247 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 781826770 781828446 1677 4 0.238521168753727 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G599300 chr2B_781831355 chr2B 781831355 C C T T 4 synonymous_variant LOW transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781831497 chr2B 781831497 G G A A 4 synonymous_variant LOW transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781832010 chr2B 781832010 T A T A 3 missense_variant MODERATE transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781831337 chr2B 781831337 G G A A 4 synonymous_variant LOW transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781831566 chr2B 781831566 T T C C 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781830432 chr2B 781830432 A A G G 4 missense_variant MODERATE transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599300 chr2B_781831479 chr2B 781831479 A A G G 4 synonymous_variant LOW transcript non_Triplet 781830398 781832653 2256 7 0.310283687943262 RFvsST 727679866 801216973 73537108 no 29.3788709941317 TraesCS2B01G599600 chr2B_782150648 chr2B 782150648 A G A G 3 missense_variant MODERATE transcript non_Triplet 782149899 782154168 4270 5 0.117096018735363 RFvsST 727679866 801216973 73537108 no 165.119617371532 TraesCS2B01G599600 chr2B_782154215 chr2B 782154215 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 782149899 782154168 4270 5 0.117096018735363 RFvsST 727679866 801216973 73537108 no 165.119617371532 TraesCS2B01G599600 chr2B_782152751 chr2B 782152751 C T C T 3 synonymous_variant LOW transcript non_Triplet 782149899 782154168 4270 5 0.117096018735363 RFvsST 727679866 801216973 73537108 no 165.119617371532 TraesCS2B01G599600 chr2B_782152253 chr2B 782152253 G C G C 3 synonymous_variant LOW transcript non_Triplet 782149899 782154168 4270 5 0.117096018735363 RFvsST 727679866 801216973 73537108 no 165.119617371532 TraesCS2B01G599600 chr2B_782151584 chr2B 782151584 C T C T 3 missense_variant MODERATE transcript non_Triplet 782149899 782154168 4270 5 0.117096018735363 RFvsST 727679866 801216973 73537108 no 165.119617371532 TraesCS2B01G599800 chr2B_782534298 chr2B 782534298 A G A G 3 synonymous_variant LOW transcript non_Triplet 782534153 782537929 3777 1 0.026476039184538 RFvsST 727679866 801216973 73537108 no 150.00557539254 TraesCS2B01G599900 chr2B_782684578 chr2B 782684578 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 782684614 782688388 3775 5 0.132450331125828 RFvsST 727679866 801216973 73537108 no 100.399641830637 TraesCS2B01G599900 chr2B_782684786 chr2B 782684786 A G A G 3 synonymous_variant LOW transcript non_Triplet 782684614 782688388 3775 5 0.132450331125828 RFvsST 727679866 801216973 73537108 no 100.399641830637 TraesCS2B01G599900 chr2B_782684566 chr2B 782684566 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 782684614 782688388 3775 5 0.132450331125828 RFvsST 727679866 801216973 73537108 no 100.399641830637 TraesCS2B01G599900 chr2B_782684707 chr2B 782684707 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 782684614 782688388 3775 5 0.132450331125828 RFvsST 727679866 801216973 73537108 no 100.399641830637 TraesCS2B01G599900 chr2B_782685160 chr2B 782685160 G A G A 3 synonymous_variant LOW transcript non_Triplet 782684614 782688388 3775 5 0.132450331125828 RFvsST 727679866 801216973 73537108 no 100.399641830637 TraesCS2B01G600300 chr2B_783445219 chr2B 783445219 C T C T 3 synonymous_variant LOW transcript non_Triplet 783441874 783449170 7297 3 0.0411127860764698 RFvsST 727679866 801216973 73537108 no 27.5154004011251 TraesCS2B01G600300 chr2B_783444813 chr2B 783444813 C T C T 3 synonymous_variant LOW transcript non_Triplet 783441874 783449170 7297 3 0.0411127860764698 RFvsST 727679866 801216973 73537108 no 27.5154004011251 TraesCS2B01G600300 chr2B_783444741 chr2B 783444741 A G A G 3 missense_variant MODERATE transcript non_Triplet 783441874 783449170 7297 3 0.0411127860764698 RFvsST 727679866 801216973 73537108 no 27.5154004011251 TraesCS2B01G602000 chr2B_784551326 chr2B 784551326 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784545900 chr2B 784545900 C T C T 3 missense_variant MODERATE transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784546123 chr2B 784546123 C T C T 3 synonymous_variant LOW transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784545229 chr2B 784545229 C G C G 3 synonymous_variant LOW transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784551315 chr2B 784551315 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784551327 chr2B 784551327 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602000 chr2B_784551329 chr2B 784551329 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 784544201 784547615 3415 7 0.20497803806735 RFvsST 727679866 801216973 73537108 no 185.876805287094 TraesCS2B01G602700 chr2B_785037418 chr2B 785037418 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 785036230 785037108 879 4 0.455062571103527 RFvsST 727679866 801216973 73537108 no 71.157362023836 TraesCS2B01G602700 chr2B_785037388 chr2B 785037388 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 785036230 785037108 879 4 0.455062571103527 RFvsST 727679866 801216973 73537108 no 71.157362023836 TraesCS2B01G602700 chr2B_785037390 chr2B 785037390 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 785036230 785037108 879 4 0.455062571103527 RFvsST 727679866 801216973 73537108 no 71.157362023836 TraesCS2B01G602700 chr2B_785037244 chr2B 785037244 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 785036230 785037108 879 4 0.455062571103527 RFvsST 727679866 801216973 73537108 no 71.157362023836 TraesCS2B01G602800 chr2B_785132612 chr2B 785132612 T C T C 3 synonymous_variant LOW transcript unique_Triplet 785131545 785138384 6840 5 0.0730994152046784 RFvsST 727679866 801216973 73537108 no 71.3665040777439 TraesCS2B01G602800 chr2B_785131727 chr2B 785131727 C C T T 4 synonymous_variant LOW transcript unique_Triplet 785131545 785138384 6840 5 0.0730994152046784 RFvsST 727679866 801216973 73537108 no 71.3665040777439 TraesCS2B01G602800 chr2B_785132795 chr2B 785132795 C C T T 4 synonymous_variant LOW transcript unique_Triplet 785131545 785138384 6840 5 0.0730994152046784 RFvsST 727679866 801216973 73537108 no 71.3665040777439 TraesCS2B01G602800 chr2B_785132774 chr2B 785132774 G A G A 3 synonymous_variant LOW transcript unique_Triplet 785131545 785138384 6840 5 0.0730994152046784 RFvsST 727679866 801216973 73537108 no 71.3665040777439 TraesCS2B01G602800 chr2B_785137393 chr2B 785137393 A T A T 3 synonymous_variant LOW transcript unique_Triplet 785131545 785138384 6840 5 0.0730994152046784 RFvsST 727679866 801216973 73537108 no 71.3665040777439 TraesCS2B01G602900 chr2B_785192885 chr2B 785192885 G G T T 4 synonymous_variant LOW transcript non_Triplet 785188598 785194061 5464 4 0.0732064421669107 RFvsST 727679866 801216973 73537108 no 67.5444963353868 TraesCS2B01G602900 chr2B_785192598 chr2B 785192598 G G T T 4 missense_variant MODERATE transcript non_Triplet 785188598 785194061 5464 4 0.0732064421669107 RFvsST 727679866 801216973 73537108 no 67.5444963353868 TraesCS2B01G602900 chr2B_785195906 chr2B 785195906 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 785188598 785194061 5464 4 0.0732064421669107 RFvsST 727679866 801216973 73537108 no 67.5444963353868 TraesCS2B01G602900 chr2B_785190631 chr2B 785190631 G G A A 4 synonymous_variant LOW transcript non_Triplet 785188598 785194061 5464 4 0.0732064421669107 RFvsST 727679866 801216973 73537108 no 67.5444963353868 TraesCS2B01G603100 chr2B_785229803 chr2B 785229803 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 785229557 785230189 633 2 0.315955766192733 RFvsST 727679866 801216973 73537108 no 79.9022223798234 TraesCS2B01G603100 chr2B_785229809 chr2B 785229809 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 785229557 785230189 633 2 0.315955766192733 RFvsST 727679866 801216973 73537108 no 79.9022223798234 TraesCS2B01G603800 chr2B_785889196 chr2B 785889196 G G A A 4 synonymous_variant LOW transcript unique_Triplet 785888837 785899606 10770 5 0.0464252553389044 RFvsST 727679866 801216973 73537108 no 111.066840968685 TraesCS2B01G603800 chr2B_785888496 chr2B 785888496 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 785888837 785899606 10770 5 0.0464252553389044 RFvsST 727679866 801216973 73537108 no 111.066840968685 TraesCS2B01G603800 chr2B_785888933 chr2B 785888933 T T C C 4 synonymous_variant LOW transcript unique_Triplet 785888837 785899606 10770 5 0.0464252553389044 RFvsST 727679866 801216973 73537108 no 111.066840968685 TraesCS2B01G603800 chr2B_785890263 chr2B 785890263 G G A A 4 missense_variant MODERATE transcript unique_Triplet 785888837 785899606 10770 5 0.0464252553389044 RFvsST 727679866 801216973 73537108 no 111.066840968685 TraesCS2B01G603800 chr2B_785886316 chr2B 785886316 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 785888837 785899606 10770 5 0.0464252553389044 RFvsST 727679866 801216973 73537108 no 111.066840968685 TraesCS2B01G603900 chr2B_785943868 chr2B 785943868 A A G G 4 missense_variant MODERATE transcript non_Triplet 785942985 785948237 5253 3 0.0571102227298686 RFvsST 727679866 801216973 73537108 no 133.086888708464 TraesCS2B01G603900 chr2B_785943891 chr2B 785943891 G G A A 4 missense_variant MODERATE transcript non_Triplet 785942985 785948237 5253 3 0.0571102227298686 RFvsST 727679866 801216973 73537108 no 133.086888708464 TraesCS2B01G603900 chr2B_785944777 chr2B 785944777 G G A A 4 intron_variant MODIFIER transcript non_Triplet 785942985 785948237 5253 3 0.0571102227298686 RFvsST 727679866 801216973 73537108 no 133.086888708464 TraesCS2B01G604900 chr2B_786226350 chr2B 786226350 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 786226635 786226994 360 1 0.277777777777778 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G605000 chr2B_786229783 chr2B 786229783 C G C G 3 missense_variant MODERATE transcript unique_Triplet 786229492 786232542 3051 1 0.0327761389708292 RFvsST 727679866 801216973 73537108 no 118.85302570883 TraesCS2B01G605800 chr2B_787057041 chr2B 787057041 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057781 chr2B 787057781 C C G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058489 chr2B 787058489 G G C C 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058699 chr2B 787058699 C C T T 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057043 chr2B 787057043 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058606 chr2B 787058606 A A G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058441 chr2B 787058441 C C G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057841 chr2B 787057841 A A G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057954 chr2B 787057954 G G C C 4 missense_variant MODERATE transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058408 chr2B 787058408 G G C C 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058291 chr2B 787058291 C C G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057679 chr2B 787057679 G G A A 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787057865 chr2B 787057865 C C G G 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058345 chr2B 787058345 G G T T 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058674 chr2B 787058674 T T C C 4 missense_variant MODERATE transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G605800 chr2B_787058603 chr2B 787058603 G G A A 4 synonymous_variant LOW transcript unique_Triplet 787057058 787058792 1735 16 0.922190201729107 RFvsST 727679866 801216973 73537108 no 310.235940173724 TraesCS2B01G607100 chr2B_787958897 chr2B 787958897 A A G G 4 synonymous_variant LOW transcript unique_Triplet 787956634 787959729 3096 1 0.0322997416020672 RFvsST 727679866 801216973 73537108 no 7.46924517557228 TraesCS2B01G608100 chr2B_788524885 chr2B 788524885 T T G G 4 intron_variant MODIFIER transcript nonUnique_Triplet 788519449 788533756 14308 5 0.0349454850433324 RFvsST 727679866 801216973 73537108 no 6.34748355886308 TraesCS2B01G608100 chr2B_788524254 chr2B 788524254 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 788519449 788533756 14308 5 0.0349454850433324 RFvsST 727679866 801216973 73537108 no 6.34748355886308 TraesCS2B01G608100 chr2B_788524106 chr2B 788524106 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 788519449 788533756 14308 5 0.0349454850433324 RFvsST 727679866 801216973 73537108 no 6.34748355886308 TraesCS2B01G608100 chr2B_788521586 chr2B 788521586 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 788519449 788533756 14308 5 0.0349454850433324 RFvsST 727679866 801216973 73537108 no 6.34748355886308 TraesCS2B01G608100 chr2B_788524853 chr2B 788524853 G G C C 4 intron_variant MODIFIER transcript nonUnique_Triplet 788519449 788533756 14308 5 0.0349454850433324 RFvsST 727679866 801216973 73537108 no 6.34748355886308 TraesCS2B01G608300 chr2B_788655757 chr2B 788655757 C C T T 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788664831 chr2B 788664831 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655625 chr2B 788655625 T T C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655817 chr2B 788655817 T T G G 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788654728 chr2B 788654728 A A C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788664812 chr2B 788664812 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788661252 chr2B 788661252 T T C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788656036 chr2B 788656036 A A C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788656045 chr2B 788656045 A A G G 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655586 chr2B 788655586 C C T T 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788656384 chr2B 788656384 T T C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655148 chr2B 788655148 G G C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655139 chr2B 788655139 T T C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655718 chr2B 788655718 C C T T 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655013 chr2B 788655013 C C G G 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788658664 chr2B 788658664 T T C C 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788654979 chr2B 788654979 C C G G 4 missense_variant MODERATE transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788655631 chr2B 788655631 C C T T 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608300 chr2B_788656919 chr2B 788656919 C C T T 4 synonymous_variant LOW transcript unique_Triplet 788654657 788664712 10056 19 0.188941925218775 RFvsST 727679866 801216973 73537108 no 609.613543543342 TraesCS2B01G608900 chr2B_789263834 chr2B 789263834 G G T T 4 intron_variant MODIFIER transcript unique_Triplet 789263742 789265853 2112 1 0.0473484848484848 RFvsST 727679866 801216973 73537108 no 2518.12601854051 TraesCS2B01G609800 chr2B_789681468 chr2B 789681468 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 789683244 789686519 3276 4 0.122100122100122 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G609800 chr2B_789681503 chr2B 789681503 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 789683244 789686519 3276 4 0.122100122100122 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G609800 chr2B_789681366 chr2B 789681366 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 789683244 789686519 3276 4 0.122100122100122 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G609800 chr2B_789681359 chr2B 789681359 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 789683244 789686519 3276 4 0.122100122100122 RFvsST 727679866 801216973 73537108 no No_match TraesCS2B01G610000 chr2B_789696193 chr2B 789696193 A A G G 4 synonymous_variant LOW transcript non_Triplet 789695619 789697387 1769 1 0.0565291124929339 RFvsST 727679866 801216973 73537108 no 3.59287895291456 TraesCS2B01G610200 chr2B_789874489 chr2B 789874489 G G T T 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789873451 chr2B 789873451 G G A A 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789869748 chr2B 789869748 C C T T 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789874788 chr2B 789874788 G G C C 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789874068 chr2B 789874068 T T C C 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789869718 chr2B 789869718 T T G G 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789870315 chr2B 789870315 G G C C 4 missense_variant MODERATE transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789873244 chr2B 789873244 C C G G 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789874579 chr2B 789874579 C C G G 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610200 chr2B_789874483 chr2B 789874483 T T C C 4 synonymous_variant LOW transcript unique_Triplet 789869248 789874925 5678 10 0.17611835153223 RFvsST 727679866 801216973 73537108 no 6.60516959346392 TraesCS2B01G610400 chr2B_789965326 chr2B 789965326 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789964683 chr2B 789964683 T T C C 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965339 chr2B 789965339 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789964965 chr2B 789964965 G G C C 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965269 chr2B 789965269 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965022 chr2B 789965022 T T G G 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965205 chr2B 789965205 C C G G 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965125 chr2B 789965125 C C A A 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965299 chr2B 789965299 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965533 chr2B 789965533 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965001 chr2B 789965001 G G C C 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789964962 chr2B 789964962 G G C C 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965478 chr2B 789965478 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789964845 chr2B 789964845 G G C C 4 synonymous_variant LOW transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610400 chr2B_789965546 chr2B 789965546 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 789964609 789965229 621 15 2.41545893719807 RFvsST 727679866 801216973 73537108 no 183.610494915697 TraesCS2B01G610800 chr2B_790442912 chr2B 790442912 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 790440050 790442852 2803 5 0.178380306814128 RFvsST 727679866 801216973 73537108 no 75.8611632598717 TraesCS2B01G610800 chr2B_790442955 chr2B 790442955 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 790440050 790442852 2803 5 0.178380306814128 RFvsST 727679866 801216973 73537108 no 75.8611632598717 TraesCS2B01G610800 chr2B_790442377 chr2B 790442377 G G C C 4 synonymous_variant LOW transcript unique_Triplet 790440050 790442852 2803 5 0.178380306814128 RFvsST 727679866 801216973 73537108 no 75.8611632598717 TraesCS2B01G610800 chr2B_790442780 chr2B 790442780 T T C C 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 790440050 790442852 2803 5 0.178380306814128 RFvsST 727679866 801216973 73537108 no 75.8611632598717 TraesCS2B01G610800 chr2B_790440085 chr2B 790440085 C C G G 4 synonymous_variant LOW transcript unique_Triplet 790440050 790442852 2803 5 0.178380306814128 RFvsST 727679866 801216973 73537108 no 75.8611632598717 TraesCS2B01G611800 chr2B_790752358 chr2B 790752358 T T G G 4 missense_variant MODERATE transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790751817 chr2B 790751817 C C T T 4 synonymous_variant LOW transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790752041 chr2B 790752041 G G C C 4 missense_variant MODERATE transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790752135 chr2B 790752135 G G A A 4 synonymous_variant LOW transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790752044 chr2B 790752044 C C G G 4 missense_variant MODERATE transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790752354 chr2B 790752354 A A G G 4 synonymous_variant LOW transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G611800 chr2B_790751871 chr2B 790751871 C C T T 4 synonymous_variant LOW transcript unique_Triplet 790751025 790752626 1602 7 0.436953807740325 RFvsST 727679866 801216973 73537108 no 68.328386156423 TraesCS2B01G612300 chr2B_791479527 chr2B 791479527 G G A A 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478753 chr2B 791478753 C C T T 4 missense_variant MODERATE transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478853 chr2B 791478853 G G A A 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478861 chr2B 791478861 C C T T 4 missense_variant MODERATE transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478619 chr2B 791478619 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791480428 chr2B 791480428 G G T T 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478670 chr2B 791478670 A A G G 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478775 chr2B 791478775 C C T T 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791479707 chr2B 791479707 G G C C 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791478643 chr2B 791478643 G G A A 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791479622 chr2B 791479622 C C T T 4 missense_variant MODERATE transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G612300 chr2B_791479476 chr2B 791479476 T T C C 4 synonymous_variant LOW transcript unique_Triplet 791478637 791481387 2751 12 0.436205016357688 RFvsST 727679866 801216973 73537108 no 107.096665184796 TraesCS2B01G613800 chr2B_792992093 chr2B 792992093 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 792989931 792991896 1966 2 0.101729399796541 RFvsST 727679866 801216973 73537108 no 987.47089321664 TraesCS2B01G613800 chr2B_792990207 chr2B 792990207 C C T T 4 synonymous_variant LOW transcript unique_Triplet 792989931 792991896 1966 2 0.101729399796541 RFvsST 727679866 801216973 73537108 no 987.47089321664 TraesCS2B01G615300 chr2B_793375842 chr2B 793375842 G A G A 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793375538 chr2B 793375538 G A G A 3 synonymous_variant LOW transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793376176 chr2B 793376176 C T C T 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793375393 chr2B 793375393 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793375555 chr2B 793375555 T C T C 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793379943 chr2B 793379943 T G T G 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793375908 chr2B 793375908 A T A T 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793376663 chr2B 793376663 C T C T 3 synonymous_variant LOW transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G615300 chr2B_793376523 chr2B 793376523 G A G A 3 missense_variant MODERATE transcript non_Triplet 793375409 793380384 4976 9 0.180868167202572 RFvsST 727679866 801216973 73537108 no 125.0488824898 TraesCS2B01G620000 chr2B_794893336 chr2B 794893336 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 794890015 794893466 3452 2 0.0579374275782155 RFvsST 727679866 801216973 73537108 no 39.7014884159716 TraesCS2B01G620000 chr2B_794893335 chr2B 794893335 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 794890015 794893466 3452 2 0.0579374275782155 RFvsST 727679866 801216973 73537108 no 39.7014884159716 TraesCS2B01G620600 chr2B_795047439 chr2B 795047439 G G A A 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047605 chr2B 795047605 A G A G 3 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047774 chr2B 795047774 C T C T 3 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795046557 chr2B 795046557 G G A A 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047614 chr2B 795047614 C T G T,G 6 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795046551 chr2B 795046551 T T C C 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047768 chr2B 795047768 A G A G 3 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047412 chr2B 795047412 T C T C 3 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047635 chr2B 795047635 A A G G 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047128 chr2B 795047128 G G A A 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047092 chr2B 795047092 A G A G 3 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G620600 chr2B_795047403 chr2B 795047403 C C T T 4 synonymous_variant LOW transcript unique_Triplet 795045675 795048475 2801 12 0.428418421992146 RFvsST 727679866 801216973 73537108 no 103.667626378632 TraesCS2B01G621000 chr2B_795066785 chr2B 795066785 A G A G 3 synonymous_variant LOW transcript unique_Triplet 795065566 795071322 5757 1 0.0173701580684384 RFvsST 727679866 801216973 73537108 no 289.543453736192 TraesCS2B01G622500 chr2B_796598248 chr2B 796598248 C G C G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796597674 chr2B 796597674 T G T G 3 missense_variant MODERATE transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796597816 chr2B 796597816 C G C G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796598380 chr2B 796598380 G C G C 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796597522 chr2B 796597522 T A T A 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796600246 chr2B 796600246 C G C G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796600333 chr2B 796600333 A C A C 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796597627 chr2B 796597627 C G C G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796598878 chr2B 796598878 A G A G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G622500 chr2B_796598716 chr2B 796598716 C G C G 3 synonymous_variant LOW transcript non_Triplet 796597519 796600632 3114 10 0.321130378933847 RFvsST 727679866 801216973 73537108 no 216.962450222643 TraesCS2B01G623400 chr2B_797126533 chr2B 797126533 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126942 chr2B 797126942 G C G C 3 synonymous_variant LOW transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126895 chr2B 797126895 G C G C 3 missense_variant MODERATE transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126579 chr2B 797126579 T G T G 3 missense_variant MODERATE transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126887 chr2B 797126887 T G T G 3 missense_variant MODERATE transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126594 chr2B 797126594 A G A G 3 synonymous_variant LOW transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G623400 chr2B_797126771 chr2B 797126771 G C G C 3 synonymous_variant LOW transcript unique_Triplet 797126543 797126983 441 7 1.58730158730159 RFvsST 727679866 801216973 73537108 no 189.67929818547 TraesCS2B01G624100 chr2B_797326400 chr2B 797326400 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797332704 chr2B 797332704 T G T G 3 missense_variant MODERATE transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797326332 chr2B 797326332 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797326328 chr2B 797326328 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797337138 chr2B 797337138 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797326482 chr2B 797326482 G A G A 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797332734 chr2B 797332734 A G A G 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797337000 chr2B 797337000 C G C G 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797328204 chr2B 797328204 A G A G 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797329570 chr2B 797329570 C T C T 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797327210 chr2B 797327210 G A G A 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797332522 chr2B 797332522 A G A G 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797337212 chr2B 797337212 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797329558 chr2B 797329558 T C T C 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797326427 chr2B 797326427 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797330794 chr2B 797330794 T A T A 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624100 chr2B_797326521 chr2B 797326521 A C A C 3 synonymous_variant LOW transcript unique_Triplet 797326473 797337134 10662 17 0.159444757081223 RFvsST 727679866 801216973 73537108 no 63.8789018064483 TraesCS2B01G624200 chr2B_797466096 chr2B 797466096 A G A G 3 synonymous_variant LOW transcript unique_Triplet 797464238 797466192 1955 2 0.10230179028133 RFvsST 727679866 801216973 73537108 no 96.202269638466 TraesCS2B01G624200 chr2B_797466118 chr2B 797466118 G C G C 3 missense_variant MODERATE transcript unique_Triplet 797464238 797466192 1955 2 0.10230179028133 RFvsST 727679866 801216973 73537108 no 96.202269638466 TraesCS2B01G624600 chr2B_797622991 chr2B 797622991 G T G T 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797625854 chr2B 797625854 C A C A 3 missense_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626169 chr2B 797626169 A T A T 3 missense_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626605 chr2B 797626605 C T C T 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797625931 chr2B 797625931 C G C G 3 missense_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797625922 chr2B 797625922 G A G A 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797625751 chr2B 797625751 T C T C 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626257 chr2B 797626257 G T G T 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626554 chr2B 797626554 C G C G 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626032 chr2B 797626032 A T A T 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626838 chr2B 797626838 T C T C 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797626963 chr2B 797626963 C T C T 3 synonymous_variant LOW transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797627020 chr2B 797627020 G A G A 3 missense_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624600 chr2B_797625995 chr2B 797625995 A G A G 3 missense_variant MODERATE transcript non_Triplet 797622761 797627374 4614 14 0.303424360641526 RFvsST 727679866 801216973 73537108 no 281.014770576193 TraesCS2B01G624800 chr2B_797932382 chr2B 797932382 C G C G 3 missense_variant MODERATE transcript non_Triplet 797932322 797933113 792 2 0.252525252525253 RFvsST 727679866 801216973 73537108 no 51.6977137935015 TraesCS2B01G624800 chr2B_797932153 chr2B 797932153 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 797932322 797933113 792 2 0.252525252525253 RFvsST 727679866 801216973 73537108 no 51.6977137935015 TraesCS2B01G625300 chr2B_798135511 chr2B 798135511 G A G A 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135601 chr2B 798135601 G A G A 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798138055 chr2B 798138055 G T G T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135345 chr2B 798135345 G T G T 3 missense_variant MODERATE transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798139295 chr2B 798139295 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135821 chr2B 798135821 G C G C 3 missense_variant MODERATE transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135648 chr2B 798135648 A G A G 3 missense_variant MODERATE transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798136662 chr2B 798136662 C T C T 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135688 chr2B 798135688 G A G A 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135267 chr2B 798135267 A G A G 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G625300 chr2B_798135865 chr2B 798135865 T C T C 3 synonymous_variant LOW transcript unique_Triplet 798134845 798139344 4500 11 0.244444444444444 RFvsST 727679866 801216973 73537108 no 284.935191260261 TraesCS2B01G626000 chr2B_798578825 chr2B 798578825 C G C G 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582599 chr2B 798582599 A G A G 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582902 chr2B 798582902 C T C T 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582125 chr2B 798582125 T C T C 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582191 chr2B 798582191 A T A T 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582404 chr2B 798582404 G A G A 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582485 chr2B 798582485 C T C T 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582842 chr2B 798582842 A G A G 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798578819 chr2B 798578819 G C G C 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582218 chr2B 798582218 T C T C 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798578421 chr2B 798578421 G C G C 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798581882 chr2B 798581882 C G C G 3 synonymous_variant LOW transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626000 chr2B_798582186 chr2B 798582186 A T A T 3 missense_variant MODERATE transcript unique_Triplet 798578293 798583133 4841 13 0.268539557942574 RFvsST 727679866 801216973 73537108 no 287.841417591 TraesCS2B01G626700 chr2B_798744018 chr2B 798744018 C T C T 3 synonymous_variant LOW transcript non_Triplet 798743094 798746067 2974 4 0.134498991257566 RFvsST 727679866 801216973 73537108 no 111.805580630825 TraesCS2B01G626700 chr2B_798743137 chr2B 798743137 C G C G 3 missense_variant MODERATE transcript non_Triplet 798743094 798746067 2974 4 0.134498991257566 RFvsST 727679866 801216973 73537108 no 111.805580630825 TraesCS2B01G626700 chr2B_798744052 chr2B 798744052 G C G C 3 missense_variant MODERATE transcript non_Triplet 798743094 798746067 2974 4 0.134498991257566 RFvsST 727679866 801216973 73537108 no 111.805580630825 TraesCS2B01G626700 chr2B_798743142 chr2B 798743142 G A G A 3 synonymous_variant LOW transcript non_Triplet 798743094 798746067 2974 4 0.134498991257566 RFvsST 727679866 801216973 73537108 no 111.805580630825 TraesCS2B01G627200 chr2B_799048810 chr2B 799048810 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 799046388 799047611 1224 4 0.326797385620915 RFvsST 727679866 801216973 73537108 no 80.167257495485 TraesCS2B01G627200 chr2B_799048849 chr2B 799048849 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 799046388 799047611 1224 4 0.326797385620915 RFvsST 727679866 801216973 73537108 no 80.167257495485 TraesCS2B01G627200 chr2B_799048862 chr2B 799048862 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 799046388 799047611 1224 4 0.326797385620915 RFvsST 727679866 801216973 73537108 no 80.167257495485 TraesCS2B01G627200 chr2B_799047626 chr2B 799047626 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 799046388 799047611 1224 4 0.326797385620915 RFvsST 727679866 801216973 73537108 no 80.167257495485 TraesCS2B01G628700 chr2B_800063379 chr2B 800063379 C T C T 3 synonymous_variant LOW transcript unique_Triplet 800057955 800064045 6091 5 0.0820883270398949 RFvsST 727679866 801216973 73537108 no 53.2932790558575 TraesCS2B01G628700 chr2B_800063399 chr2B 800063399 C T C T 3 missense_variant MODERATE transcript unique_Triplet 800057955 800064045 6091 5 0.0820883270398949 RFvsST 727679866 801216973 73537108 no 53.2932790558575 TraesCS2B01G628700 chr2B_800060047 chr2B 800060047 C T C T 3 missense_variant MODERATE transcript unique_Triplet 800057955 800064045 6091 5 0.0820883270398949 RFvsST 727679866 801216973 73537108 no 53.2932790558575 TraesCS2B01G628700 chr2B_800058012 chr2B 800058012 A C A C 3 missense_variant MODERATE transcript unique_Triplet 800057955 800064045 6091 5 0.0820883270398949 RFvsST 727679866 801216973 73537108 no 53.2932790558575 TraesCS2B01G628700 chr2B_800060875 chr2B 800060875 C T C T 3 synonymous_variant LOW transcript unique_Triplet 800057955 800064045 6091 5 0.0820883270398949 RFvsST 727679866 801216973 73537108 no 53.2932790558575 TraesCS2B01G630000 chr2B_801163827 chr2B 801163827 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 801162261 801163851 1591 3 0.188560653676933 RFvsST 727679866 801216973 73537108 no 1202.51574122261 TraesCS2B01G630000 chr2B_801163469 chr2B 801163469 A C A C 3 synonymous_variant LOW transcript unique_Triplet 801162261 801163851 1591 3 0.188560653676933 RFvsST 727679866 801216973 73537108 no 1202.51574122261 TraesCS2B01G630000 chr2B_801162212 chr2B 801162212 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 801162261 801163851 1591 3 0.188560653676933 RFvsST 727679866 801216973 73537108 no 1202.51574122261 TraesCS2D01G015500 chr2D_7528383 chr2D 7528383 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 7525807 7528467 2661 1 0.0375798571965427 RFvsST 39675 193393919 193354245 no 139.088157867545 TraesCS2D01G022800 chr2D_10323486 chr2D 10323486 G A G A 3 missense_variant MODERATE transcript unique_Triplet 10318749 10323628 4880 2 0.040983606557377 RFvsST 39675 193393919 193354245 no 23.0016705327474 TraesCS2D01G022800 chr2D_10323461 chr2D 10323461 A G A G 3 missense_variant MODERATE transcript unique_Triplet 10318749 10323628 4880 2 0.040983606557377 RFvsST 39675 193393919 193354245 no 23.0016705327474 TraesCS2D01G022900 chr2D_10334846 chr2D 10334846 T C T C 3 missense_variant MODERATE transcript unique_Triplet 10331791 10337197 5407 1 0.0184945441094877 RFvsST 39675 193393919 193354245 no 881.545580952209 TraesCS2D01G023900 chr2D_10723390 chr2D 10723390 T A T A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723872 chr2D 10723872 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10724178 chr2D 10724178 T A T A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10722919 chr2D 10722919 T G T G 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723839 chr2D 10723839 G C G C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723832 chr2D 10723832 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723449 chr2D 10723449 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723132 chr2D 10723132 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10724128 chr2D 10724128 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723055 chr2D 10723055 A T A T 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10724066 chr2D 10724066 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723205 chr2D 10723205 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10724129 chr2D 10724129 C A C A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723163 chr2D 10723163 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723514 chr2D 10723514 G C G C 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723876 chr2D 10723876 T A T A 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G023900 chr2D_10723335 chr2D 10723335 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 10722521 10725335 2815 17 0.603907637655417 RFvsST 39675 193393919 193354245 no 2471.49918372557 TraesCS2D01G024100 chr2D_10750120 chr2D 10750120 C G C G 3 missense_variant MODERATE transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10750544 chr2D 10750544 T C T C 3 synonymous_variant LOW transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10749910 chr2D 10749910 A G A G 3 missense_variant MODERATE transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10749144 chr2D 10749144 T A T A 3 synonymous_variant LOW transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10749237 chr2D 10749237 T C T C 3 synonymous_variant LOW transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10750239 chr2D 10750239 C G C G 3 missense_variant MODERATE transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10750478 chr2D 10750478 T C T C 3 synonymous_variant LOW transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10749994 chr2D 10749994 T C T C 3 missense_variant MODERATE transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024100 chr2D_10750022 chr2D 10750022 C A C A 3 synonymous_variant LOW transcript non_Triplet 10749039 10750753 1715 9 0.524781341107872 RFvsST 39675 193393919 193354245 no 252.795734855386 TraesCS2D01G024600 chr2D_10871265 chr2D 10871265 T C T C 3 missense_variant MODERATE transcript unique_Triplet 10867490 10872274 4785 1 0.0208986415882968 RFvsST 39675 193393919 193354245 no 366.315283431403 TraesCS2D01G026600 chr2D_11219214 chr2D 11219214 A A C C 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11219157 chr2D 11219157 T T C C 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11218978 chr2D 11218978 A C A C 3 missense_variant MODERATE transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11219019 chr2D 11219019 G G A A 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11218999 chr2D 11218999 T T A A 4 missense_variant MODERATE transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11218917 chr2D 11218917 C C G G 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11218947 chr2D 11218947 G G C C 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11219172 chr2D 11219172 T T C C 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11219226 chr2D 11219226 C C A A 4 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026600 chr2D_11218977 chr2D 11218977 G T G T 3 synonymous_variant LOW transcript non_Triplet 11218882 11220772 1891 10 0.528820729772607 RFvsST 39675 193393919 193354245 no 97.787978557602 TraesCS2D01G026700 chr2D_11244301 chr2D 11244301 C G A A,G 6 upstream_gene_variant MODIFIER transcript non_Triplet 11248890 11259222 10333 1 0.00967773153972709 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G038800 chr2D_14264164 chr2D 14264164 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 14258487 14261336 2850 1 0.0350877192982456 RFvsST 39675 193393919 193354245 no 72.8901775760084 TraesCS2D01G043400 chr2D_15609233 chr2D 15609233 T C T C 3 missense_variant MODERATE transcript unique_Triplet 15594940 15609297 14358 2 0.0139295166457724 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G043400 chr2D_15608359 chr2D 15608359 C T C T 3 synonymous_variant LOW transcript unique_Triplet 15594940 15609297 14358 2 0.0139295166457724 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G044600 chr2D_16124964 chr2D 16124964 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 16124647 16130510 5864 4 0.0682128240109141 RFvsST 39675 193393919 193354245 no 194.495619014634 TraesCS2D01G044600 chr2D_16129754 chr2D 16129754 A G A G 3 synonymous_variant LOW transcript non_Triplet 16124647 16130510 5864 4 0.0682128240109141 RFvsST 39675 193393919 193354245 no 194.495619014634 TraesCS2D01G044600 chr2D_16129503 chr2D 16129503 T C T C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 16124647 16130510 5864 4 0.0682128240109141 RFvsST 39675 193393919 193354245 no 194.495619014634 TraesCS2D01G044600 chr2D_16129694 chr2D 16129694 A C A C 3 missense_variant MODERATE transcript non_Triplet 16124647 16130510 5864 4 0.0682128240109141 RFvsST 39675 193393919 193354245 no 194.495619014634 TraesCS2D01G049500 chr2D_18231948 chr2D 18231948 T T G G 4 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G049500 chr2D_18232211 chr2D 18232211 C T C T 3 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G049500 chr2D_18232628 chr2D 18232628 A A G G 4 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G049500 chr2D_18232837 chr2D 18232837 C C T T 4 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G049500 chr2D_18231939 chr2D 18231939 T T C C 4 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G049500 chr2D_18232094 chr2D 18232094 T T C C 4 synonymous_variant LOW transcript non_Triplet 18230525 18234268 3744 6 0.16025641025641 RFvsST 39675 193393919 193354245 no 259.175704114925 TraesCS2D01G050300 chr2D_18646373 chr2D 18646373 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18645051 chr2D 18645051 C C T T 4 missense_variant MODERATE transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18642203 chr2D 18642203 A A G G 4 missense_variant MODERATE transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18645875 chr2D 18645875 C C T T 4 synonymous_variant LOW transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18645127 chr2D 18645127 G G A A 4 synonymous_variant LOW transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18646365 chr2D 18646365 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G050300 chr2D_18642261 chr2D 18642261 G G C C 4 missense_variant MODERATE transcript non_Triplet 18642131 18646326 4196 7 0.166825548141087 RFvsST 39675 193393919 193354245 no 318.266228757951 TraesCS2D01G069100 chr2D_28965350 chr2D 28965350 G G T T 4 missense_variant MODERATE transcript non_Triplet 28965022 28966482 1461 1 0.0684462696783025 RFvsST 39675 193393919 193354245 no 570.589944942068 TraesCS2D01G080300 chr2D_34279212 chr2D 34279212 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 34273351 34275601 2251 1 0.0444247001332741 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G100500 chr2D_52558698 chr2D 52558698 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 52557762 52559317 1556 1 0.06426735218509 RFvsST 39675 193393919 193354245 no 49.2026845653107 TraesCS2D01G102000 chr2D_55152187 chr2D 55152187 G G T T 4 synonymous_variant LOW transcript unique_Triplet 55151506 55152378 873 1 0.11454753722795 RFvsST 39675 193393919 193354245 no 805.713016227656 TraesCS2D01G109900 chr2D_60946925 chr2D 60946925 G G A A 4 missense_variant MODERATE transcript unique_Triplet 60946502 60954098 7597 2 0.0263261813873898 RFvsST 39675 193393919 193354245 no 271.842821231177 TraesCS2D01G109900 chr2D_60946873 chr2D 60946873 A A G G 4 synonymous_variant LOW transcript unique_Triplet 60946502 60954098 7597 2 0.0263261813873898 RFvsST 39675 193393919 193354245 no 271.842821231177 TraesCS2D01G110200 chr2D_61232911 chr2D 61232911 T T A A 4 missense_variant MODERATE transcript non_Triplet 61231977 61235547 3571 3 0.0840100812097452 RFvsST 39675 193393919 193354245 no 134.234673985601 TraesCS2D01G110200 chr2D_61234764 chr2D 61234764 G G A A 4 missense_variant MODERATE transcript non_Triplet 61231977 61235547 3571 3 0.0840100812097452 RFvsST 39675 193393919 193354245 no 134.234673985601 TraesCS2D01G110200 chr2D_61234226 chr2D 61234226 A A G G 4 missense_variant MODERATE transcript non_Triplet 61231977 61235547 3571 3 0.0840100812097452 RFvsST 39675 193393919 193354245 no 134.234673985601 TraesCS2D01G110700 chr2D_61319776 chr2D 61319776 T T C C 4 missense_variant MODERATE transcript non_Triplet 61315311 61319884 4574 1 0.0218627022299956 RFvsST 39675 193393919 193354245 no 168.363692588243 TraesCS2D01G111300 chr2D_61979582 chr2D 61979582 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 61976973 61979663 2691 1 0.0371609067261241 RFvsST 39675 193393919 193354245 no 121.10857162126 TraesCS2D01G111400 chr2D_61984238 chr2D 61984238 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 61980339 61984479 4141 2 0.0482975126780971 RFvsST 39675 193393919 193354245 no 91.8026138475373 TraesCS2D01G111400 chr2D_61980648 chr2D 61980648 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 61980339 61984479 4141 2 0.0482975126780971 RFvsST 39675 193393919 193354245 no 91.8026138475373 TraesCS2D01G111500 chr2D_62024928 chr2D 62024928 A A G G 4 synonymous_variant LOW transcript unique_Triplet 62022163 62027732 5570 4 0.0718132854578097 RFvsST 39675 193393919 193354245 no 365.743256506827 TraesCS2D01G111500 chr2D_62024603 chr2D 62024603 C C G G 4 missense_variant MODERATE transcript unique_Triplet 62022163 62027732 5570 4 0.0718132854578097 RFvsST 39675 193393919 193354245 no 365.743256506827 TraesCS2D01G111500 chr2D_62024860 chr2D 62024860 T T G G 4 synonymous_variant LOW transcript unique_Triplet 62022163 62027732 5570 4 0.0718132854578097 RFvsST 39675 193393919 193354245 no 365.743256506827 TraesCS2D01G111500 chr2D_62031727 chr2D 62031727 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 62022163 62027732 5570 4 0.0718132854578097 RFvsST 39675 193393919 193354245 no 365.743256506827 TraesCS2D01G111900 chr2D_62063442 chr2D 62063442 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 62063647 62065014 1368 1 0.0730994152046784 RFvsST 39675 193393919 193354245 no 80.9418430123887 TraesCS2D01G112200 chr2D_62288820 chr2D 62288820 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 62285235 62288737 3503 2 0.0570939194975735 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G112200 chr2D_62287028 chr2D 62287028 A A T T 4 synonymous_variant LOW transcript nonUnique_Triplet 62285235 62288737 3503 2 0.0570939194975735 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G112400 chr2D_62292338 chr2D 62292338 C C T T 4 missense_variant MODERATE transcript unique_Triplet 62291559 62292792 1234 1 0.0810372771474878 RFvsST 39675 193393919 193354245 no 41.527667635575 TraesCS2D01G112700 chr2D_62401677 chr2D 62401677 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 62401642 62405833 4192 1 0.0238549618320611 RFvsST 39675 193393919 193354245 no 757.475971364275 TraesCS2D01G113500 chr2D_62958740 chr2D 62958740 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 62950813 62955079 4267 1 0.0234356690883525 RFvsST 39675 193393919 193354245 no 21.0926941676584 TraesCS2D01G113600 chr2D_62957090 chr2D 62957090 T T C C 4 synonymous_variant LOW transcript unique_Triplet 62956693 62958726 2034 1 0.0491642084562439 RFvsST 39675 193393919 193354245 no 45.699821394277 TraesCS2D01G113700 chr2D_62959768 chr2D 62959768 G G C C 4 synonymous_variant LOW transcript unique_Triplet 62959711 62961874 2164 1 0.0462107208872458 RFvsST 39675 193393919 193354245 no 18.9364514054661 TraesCS2D01G118000 chr2D_67438064 chr2D 67438064 G T G T 3 missense_variant MODERATE transcript unique_Triplet 67437194 67441445 4252 1 0.0235183443085607 RFvsST 39675 193393919 193354245 no 173.702003549095 TraesCS2D01G119300 chr2D_68797075 chr2D 68797075 A C A C 3 missense_variant MODERATE transcript non_Triplet 68795901 68797629 1729 1 0.0578368999421631 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G126600 chr2D_73572961 chr2D 73572961 A G A G 3 synonymous_variant LOW transcript unique_Triplet 73570284 73578184 7901 5 0.0632831287178838 RFvsST 39675 193393919 193354245 no 290.137529395695 TraesCS2D01G126600 chr2D_73571684 chr2D 73571684 G A G A 3 synonymous_variant LOW transcript unique_Triplet 73570284 73578184 7901 5 0.0632831287178838 RFvsST 39675 193393919 193354245 no 290.137529395695 TraesCS2D01G126600 chr2D_73575761 chr2D 73575761 T C T C 3 synonymous_variant LOW transcript unique_Triplet 73570284 73578184 7901 5 0.0632831287178838 RFvsST 39675 193393919 193354245 no 290.137529395695 TraesCS2D01G126600 chr2D_73570060 chr2D 73570060 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 73570284 73578184 7901 5 0.0632831287178838 RFvsST 39675 193393919 193354245 no 290.137529395695 TraesCS2D01G126600 chr2D_73578849 chr2D 73578849 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 73570284 73578184 7901 5 0.0632831287178838 RFvsST 39675 193393919 193354245 no 290.137529395695 TraesCS2D01G126700 chr2D_73587142 chr2D 73587142 C T C T 3 synonymous_variant LOW transcript unique_Triplet 73583386 73588101 4716 3 0.0636132315521628 RFvsST 39675 193393919 193354245 no 64.6609803361129 TraesCS2D01G126700 chr2D_73588086 chr2D 73588086 C A C A 3 missense_variant MODERATE transcript unique_Triplet 73583386 73588101 4716 3 0.0636132315521628 RFvsST 39675 193393919 193354245 no 64.6609803361129 TraesCS2D01G126700 chr2D_73587990 chr2D 73587990 C A C A 3 synonymous_variant LOW transcript unique_Triplet 73583386 73588101 4716 3 0.0636132315521628 RFvsST 39675 193393919 193354245 no 64.6609803361129 TraesCS2D01G127100 chr2D_73853571 chr2D 73853571 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 73853946 73855250 1305 1 0.0766283524904215 RFvsST 39675 193393919 193354245 no 4.4998542469933 TraesCS2D01G127600 chr2D_74136645 chr2D 74136645 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 74136656 74138792 2137 2 0.0935891436593355 RFvsST 39675 193393919 193354245 no 11.6223755182059 TraesCS2D01G127600 chr2D_74136629 chr2D 74136629 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 74136656 74138792 2137 2 0.0935891436593355 RFvsST 39675 193393919 193354245 no 11.6223755182059 TraesCS2D01G127800 chr2D_74279469 chr2D 74279469 A C A C 3 missense_variant MODERATE transcript unique_Triplet 74279335 74281936 2602 1 0.0384319754035357 RFvsST 39675 193393919 193354245 no 42.4721438326468 TraesCS2D01G128200 chr2D_74928911 chr2D 74928911 C T C T 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74927405 chr2D 74927405 T C T C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74927898 chr2D 74927898 G A G A 3 missense_variant MODERATE transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74929561 chr2D 74929561 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928300 chr2D 74928300 G A G A 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928802 chr2D 74928802 C T C T 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928908 chr2D 74928908 G A G A 3 missense_variant MODERATE transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928835 chr2D 74928835 G A G A 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74927396 chr2D 74927396 G A G A 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928399 chr2D 74928399 C T C T 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74929560 chr2D 74929560 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74927291 chr2D 74927291 A C A C 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128200 chr2D_74928820 chr2D 74928820 G A G A 3 synonymous_variant LOW transcript unique_Triplet 74927139 74929558 2420 13 0.537190082644628 RFvsST 39675 193393919 193354245 no 281.251946924722 TraesCS2D01G128400 chr2D_74938353 chr2D 74938353 G A G A 3 missense_variant MODERATE transcript unique_Triplet 74936661 74938520 1860 4 0.21505376344086 RFvsST 39675 193393919 193354245 no 86.8224269763421 TraesCS2D01G128400 chr2D_74938312 chr2D 74938312 C G C G 3 missense_variant MODERATE transcript unique_Triplet 74936661 74938520 1860 4 0.21505376344086 RFvsST 39675 193393919 193354245 no 86.8224269763421 TraesCS2D01G128400 chr2D_74934658 chr2D 74934658 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 74936661 74938520 1860 4 0.21505376344086 RFvsST 39675 193393919 193354245 no 86.8224269763421 TraesCS2D01G128400 chr2D_74938048 chr2D 74938048 A T A T 3 missense_variant MODERATE transcript unique_Triplet 74936661 74938520 1860 4 0.21505376344086 RFvsST 39675 193393919 193354245 no 86.8224269763421 TraesCS2D01G128600 chr2D_74966278 chr2D 74966278 G A G A 3 missense_variant MODERATE transcript non_Triplet 74965898 74968992 3095 1 0.0323101777059774 RFvsST 39675 193393919 193354245 no 54.7310928551665 TraesCS2D01G128700 chr2D_74975502 chr2D 74975502 T C T C 3 synonymous_variant LOW transcript unique_Triplet 74974854 74977889 3036 1 0.0329380764163373 RFvsST 39675 193393919 193354245 no 51.144360027403 TraesCS2D01G128800 chr2D_74981581 chr2D 74981581 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 74979623 74981828 2206 2 0.0906618313689937 RFvsST 39675 193393919 193354245 no 77.9508016448056 TraesCS2D01G128800 chr2D_74981737 chr2D 74981737 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 74979623 74981828 2206 2 0.0906618313689937 RFvsST 39675 193393919 193354245 no 77.9508016448056 TraesCS2D01G128900 chr2D_74986261 chr2D 74986261 C G C G 3 synonymous_variant LOW transcript unique_Triplet 74986057 74986659 603 1 0.165837479270315 RFvsST 39675 193393919 193354245 no 19.0815185213801 TraesCS2D01G129200 chr2D_75001713 chr2D 75001713 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75004308 chr2D 75004308 C G C G 3 synonymous_variant LOW transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75001895 chr2D 75001895 C T C T 3 missense_variant MODERATE transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75005782 chr2D 75005782 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75003582 chr2D 75003582 C T C T 3 synonymous_variant LOW transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75004273 chr2D 75004273 C T C T 3 missense_variant MODERATE transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75001999 chr2D 75001999 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129200 chr2D_75002262 chr2D 75002262 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75001623 75006080 4458 8 0.179452669358457 RFvsST 39675 193393919 193354245 no 121.737508798714 TraesCS2D01G129300 chr2D_75095538 chr2D 75095538 T C T C 3 synonymous_variant LOW transcript unique_Triplet 75093183 75097025 3843 3 0.078064012490242 RFvsST 39675 193393919 193354245 no 104.35790131979 TraesCS2D01G129300 chr2D_75097166 chr2D 75097166 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75093183 75097025 3843 3 0.078064012490242 RFvsST 39675 193393919 193354245 no 104.35790131979 TraesCS2D01G129300 chr2D_75093919 chr2D 75093919 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75093183 75097025 3843 3 0.078064012490242 RFvsST 39675 193393919 193354245 no 104.35790131979 TraesCS2D01G129400 chr2D_75258038 chr2D 75258038 C G C G 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75259345 chr2D 75259345 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75251458 chr2D 75251458 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75258384 chr2D 75258384 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75253321 chr2D 75253321 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75257764 chr2D 75257764 C T C T 3 synonymous_variant LOW transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75258617 chr2D 75258617 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75259443 chr2D 75259443 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75250689 chr2D 75250689 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75257918 chr2D 75257918 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75252892 chr2D 75252892 C G C G 3 missense_variant MODERATE transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129400 chr2D_75250666 chr2D 75250666 C T C T 3 synonymous_variant LOW transcript unique_Triplet 75250145 75258295 8151 12 0.147221199852779 RFvsST 39675 193393919 193354245 no 317.293210843532 TraesCS2D01G129500 chr2D_75392169 chr2D 75392169 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75389686 75390244 559 1 0.178890876565295 RFvsST 39675 193393919 193354245 no 1149.19370424801 TraesCS2D01G129600 chr2D_75396131 chr2D 75396131 T C T C 3 missense_variant MODERATE transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129600 chr2D_75395316 chr2D 75395316 G A G A 3 synonymous_variant LOW transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129600 chr2D_75395958 chr2D 75395958 G A G A 3 synonymous_variant LOW transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129600 chr2D_75395203 chr2D 75395203 A C A C 3 missense_variant MODERATE transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129600 chr2D_75395230 chr2D 75395230 G A G A 3 missense_variant MODERATE transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129600 chr2D_75394906 chr2D 75394906 C T C T 3 missense_variant MODERATE transcript unique_Triplet 75392207 75396759 4553 6 0.131781243136394 RFvsST 39675 193393919 193354245 no 364.231458916228 TraesCS2D01G129700 chr2D_75506472 chr2D 75506472 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 75501910 75506854 4945 4 0.0808897876643074 RFvsST 39675 193393919 193354245 no 56.8910459561624 TraesCS2D01G129700 chr2D_75503360 chr2D 75503360 G A G A 3 synonymous_variant LOW transcript unique_Triplet 75501910 75506854 4945 4 0.0808897876643074 RFvsST 39675 193393919 193354245 no 56.8910459561624 TraesCS2D01G129700 chr2D_75506484 chr2D 75506484 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 75501910 75506854 4945 4 0.0808897876643074 RFvsST 39675 193393919 193354245 no 56.8910459561624 TraesCS2D01G129700 chr2D_75503387 chr2D 75503387 C G C G 3 synonymous_variant LOW transcript unique_Triplet 75501910 75506854 4945 4 0.0808897876643074 RFvsST 39675 193393919 193354245 no 56.8910459561624 TraesCS2D01G129800 chr2D_75551776 chr2D 75551776 G A G A 3 synonymous_variant LOW transcript non_Triplet 75551698 75554381 2684 1 0.03725782414307 RFvsST 39675 193393919 193354245 no 5.07624489167521 TraesCS2D01G129900 chr2D_75556313 chr2D 75556313 C T C T 3 synonymous_variant LOW transcript non_Triplet 75556205 75558790 2586 4 0.154679040989946 RFvsST 39675 193393919 193354245 no 14.2278750917479 TraesCS2D01G129900 chr2D_75557468 chr2D 75557468 G T G T 3 missense_variant MODERATE transcript non_Triplet 75556205 75558790 2586 4 0.154679040989946 RFvsST 39675 193393919 193354245 no 14.2278750917479 TraesCS2D01G129900 chr2D_75556699 chr2D 75556699 A T A T 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 75556205 75558790 2586 4 0.154679040989946 RFvsST 39675 193393919 193354245 no 14.2278750917479 TraesCS2D01G129900 chr2D_75556839 chr2D 75556839 G A G A 3 synonymous_variant LOW transcript non_Triplet 75556205 75558790 2586 4 0.154679040989946 RFvsST 39675 193393919 193354245 no 14.2278750917479 TraesCS2D01G130200 chr2D_75658398 chr2D 75658398 C T C T 3 synonymous_variant LOW transcript unique_Triplet 75656250 75659079 2830 4 0.141342756183746 RFvsST 39675 193393919 193354245 no 36.3233856668326 TraesCS2D01G130200 chr2D_75659084 chr2D 75659084 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75656250 75659079 2830 4 0.141342756183746 RFvsST 39675 193393919 193354245 no 36.3233856668326 TraesCS2D01G130200 chr2D_75657729 chr2D 75657729 A T A T 3 synonymous_variant LOW transcript unique_Triplet 75656250 75659079 2830 4 0.141342756183746 RFvsST 39675 193393919 193354245 no 36.3233856668326 TraesCS2D01G130200 chr2D_75658460 chr2D 75658460 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 75656250 75659079 2830 4 0.141342756183746 RFvsST 39675 193393919 193354245 no 36.3233856668326 TraesCS2D01G130900 chr2D_76529299 chr2D 76529299 G A G A 3 missense_variant MODERATE transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G130900 chr2D_76541694 chr2D 76541694 A T A T 3 synonymous_variant LOW transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G130900 chr2D_76529069 chr2D 76529069 G C G C 3 synonymous_variant LOW transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G130900 chr2D_76543259 chr2D 76543259 C T C T 3 synonymous_variant LOW transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G130900 chr2D_76528840 chr2D 76528840 A G A G 3 missense_variant MODERATE transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G130900 chr2D_76543649 chr2D 76543649 T C T C 3 synonymous_variant LOW transcript unique_Triplet 76528470 76543733 15264 6 0.0393081761006289 RFvsST 39675 193393919 193354245 no 288.857264376214 TraesCS2D01G131100 chr2D_76634217 chr2D 76634217 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131100 chr2D_76639144 chr2D 76639144 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131100 chr2D_76638944 chr2D 76638944 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131100 chr2D_76634931 chr2D 76634931 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131100 chr2D_76634375 chr2D 76634375 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131100 chr2D_76634868 chr2D 76634868 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 76634429 76634623 195 6 3.07692307692308 RFvsST 39675 193393919 193354245 no 580.342081602588 TraesCS2D01G131300 chr2D_76652945 chr2D 76652945 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 76652218 76652844 627 3 0.478468899521531 RFvsST 39675 193393919 193354245 no 84.0734959732514 TraesCS2D01G131300 chr2D_76653072 chr2D 76653072 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 76652218 76652844 627 3 0.478468899521531 RFvsST 39675 193393919 193354245 no 84.0734959732514 TraesCS2D01G131300 chr2D_76652935 chr2D 76652935 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 76652218 76652844 627 3 0.478468899521531 RFvsST 39675 193393919 193354245 no 84.0734959732514 TraesCS2D01G131800 chr2D_76802540 chr2D 76802540 G C G C 3 synonymous_variant LOW transcript unique_Triplet 76802063 76802689 627 1 0.159489633173844 RFvsST 39675 193393919 193354245 no 12.854242143969 TraesCS2D01G132200 chr2D_77132268 chr2D 77132268 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 77129536 77132522 2987 2 0.0669568128557081 RFvsST 39675 193393919 193354245 no 723.255034124804 TraesCS2D01G132200 chr2D_77132292 chr2D 77132292 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 77129536 77132522 2987 2 0.0669568128557081 RFvsST 39675 193393919 193354245 no 723.255034124804 TraesCS2D01G132600 chr2D_77381000 chr2D 77381000 T G T G 3 synonymous_variant LOW transcript unique_Triplet 77379273 77383571 4299 1 0.0232612235403582 RFvsST 39675 193393919 193354245 no 60.8969966229968 TraesCS2D01G139100 chr2D_82107461 chr2D 82107461 G T G T 3 synonymous_variant LOW transcript non_Triplet 82106728 82109601 2874 1 0.034794711203897 RFvsST 39675 193393919 193354245 no 285.196189083282 TraesCS2D01G139400 chr2D_82181474 chr2D 82181474 A A T T 4 missense_variant MODERATE transcript non_Triplet 82181139 82185194 4056 1 0.02465483234714 RFvsST 39675 193393919 193354245 no 82.3324716119267 TraesCS2D01G141200 chr2D_83136914 chr2D 83136914 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 83137510 83140567 3058 4 0.13080444735121 RFvsST 39675 193393919 193354245 no 47.7524111537216 TraesCS2D01G141200 chr2D_83136813 chr2D 83136813 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 83137510 83140567 3058 4 0.13080444735121 RFvsST 39675 193393919 193354245 no 47.7524111537216 TraesCS2D01G141200 chr2D_83136819 chr2D 83136819 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 83137510 83140567 3058 4 0.13080444735121 RFvsST 39675 193393919 193354245 no 47.7524111537216 TraesCS2D01G141200 chr2D_83138663 chr2D 83138663 G T G T 3 synonymous_variant LOW transcript unique_Triplet 83137510 83140567 3058 4 0.13080444735121 RFvsST 39675 193393919 193354245 no 47.7524111537216 TraesCS2D01G141300 chr2D_83141599 chr2D 83141599 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 83141523 83143139 1617 1 0.0618429189857761 RFvsST 39675 193393919 193354245 no 244.922810227649 TraesCS2D01G141500 chr2D_83161607 chr2D 83161607 T C T C 3 missense_variant MODERATE transcript unique_Triplet 83161551 83174773 13223 2 0.0151251607048325 RFvsST 39675 193393919 193354245 no 31.6410012326379 TraesCS2D01G141500 chr2D_83161779 chr2D 83161779 G A G A 3 synonymous_variant LOW transcript unique_Triplet 83161551 83174773 13223 2 0.0151251607048325 RFvsST 39675 193393919 193354245 no 31.6410012326379 TraesCS2D01G142000 chr2D_83822122 chr2D 83822122 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 83813576 83819390 5815 1 0.0171969045571797 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G142100 chr2D_83823061 chr2D 83823061 G T G T 3 synonymous_variant LOW transcript unique_Triplet 83822186 83824623 2438 5 0.205086136177194 RFvsST 39675 193393919 193354245 no 76.7695693006757 TraesCS2D01G142100 chr2D_83823253 chr2D 83823253 G C G C 3 missense_variant MODERATE transcript unique_Triplet 83822186 83824623 2438 5 0.205086136177194 RFvsST 39675 193393919 193354245 no 76.7695693006757 TraesCS2D01G142100 chr2D_83823058 chr2D 83823058 A C A C 3 missense_variant MODERATE transcript unique_Triplet 83822186 83824623 2438 5 0.205086136177194 RFvsST 39675 193393919 193354245 no 76.7695693006757 TraesCS2D01G142100 chr2D_83822268 chr2D 83822268 G A G A 3 missense_variant MODERATE transcript unique_Triplet 83822186 83824623 2438 5 0.205086136177194 RFvsST 39675 193393919 193354245 no 76.7695693006757 TraesCS2D01G142100 chr2D_83823796 chr2D 83823796 A G A G 3 synonymous_variant LOW transcript unique_Triplet 83822186 83824623 2438 5 0.205086136177194 RFvsST 39675 193393919 193354245 no 76.7695693006757 TraesCS2D01G142500 chr2D_83932133 chr2D 83932133 T G T G 3 missense_variant MODERATE transcript unique_Triplet 83927427 83932146 4720 3 0.0635593220338983 RFvsST 39675 193393919 193354245 no 2.14368142004638 TraesCS2D01G142500 chr2D_83928458 chr2D 83928458 T C T C 3 synonymous_variant LOW transcript unique_Triplet 83927427 83932146 4720 3 0.0635593220338983 RFvsST 39675 193393919 193354245 no 2.14368142004638 TraesCS2D01G142500 chr2D_83931639 chr2D 83931639 A T A T 3 synonymous_variant LOW transcript unique_Triplet 83927427 83932146 4720 3 0.0635593220338983 RFvsST 39675 193393919 193354245 no 2.14368142004638 TraesCS2D01G145800 chr2D_87738510 chr2D 87738510 G G A A 4 missense_variant MODERATE transcript unique_Triplet 87734457 87739079 4623 1 0.0216309755569976 RFvsST 39675 193393919 193354245 no 241.843635031125 TraesCS2D01G146800 chr2D_87835621 chr2D 87835621 C C T T 4 missense_variant MODERATE transcript unique_Triplet 87835291 87839656 4366 1 0.0229042601923958 RFvsST 39675 193393919 193354245 no 93.4528423200557 TraesCS2D01G147300 chr2D_88294200 chr2D 88294200 T T G G 4 missense_variant MODERATE transcript unique_Triplet 88287866 88294407 6542 1 0.0152858453072455 RFvsST 39675 193393919 193354245 no 85.0016803738034 TraesCS2D01G148300 chr2D_89426026 chr2D 89426026 C C T T 4 missense_variant MODERATE transcript unique_Triplet 89421143 89427444 6302 1 0.0158679784195493 RFvsST 39675 193393919 193354245 no 67.6516243332381 TraesCS2D01G148700 chr2D_90243264 chr2D 90243264 G A G A 3 synonymous_variant LOW transcript unique_Triplet 90241152 90244166 3015 1 0.033167495854063 RFvsST 39675 193393919 193354245 no 511.716707782864 TraesCS2D01G150800 chr2D_93086961 chr2D 93086961 C C T T 4 synonymous_variant LOW transcript unique_Triplet 93082634 93087238 4605 1 0.0217155266015201 RFvsST 39675 193393919 193354245 no 273.907151579827 TraesCS2D01G151400 chr2D_94338369 chr2D 94338369 T T G G 4 missense_variant MODERATE transcript unique_Triplet 94337779 94341980 4202 1 0.0237981913374584 RFvsST 39675 193393919 193354245 no 393.370613697679 TraesCS2D01G152000 chr2D_95415271 chr2D 95415271 T T C C 4 missense_variant MODERATE transcript unique_Triplet 95413602 95415612 2011 1 0.0497265042267529 RFvsST 39675 193393919 193354245 no 9.22519979171217 TraesCS2D01G152300 chr2D_95510595 chr2D 95510595 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 95507495 95510560 3066 1 0.0326157860404436 RFvsST 39675 193393919 193354245 no 661.809112330207 TraesCS2D01G152500 chr2D_95529003 chr2D 95529003 G G A A 4 missense_variant MODERATE transcript non_Triplet 95518150 95529244 11095 4 0.0360522757999099 RFvsST 39675 193393919 193354245 no 57.5950544007218 TraesCS2D01G152500 chr2D_95518780 chr2D 95518780 C C G G 4 missense_variant MODERATE transcript non_Triplet 95518150 95529244 11095 4 0.0360522757999099 RFvsST 39675 193393919 193354245 no 57.5950544007218 TraesCS2D01G152500 chr2D_95519819 chr2D 95519819 C C T T 4 missense_variant MODERATE transcript non_Triplet 95518150 95529244 11095 4 0.0360522757999099 RFvsST 39675 193393919 193354245 no 57.5950544007218 TraesCS2D01G152500 chr2D_95518176 chr2D 95518176 A A T T 4 missense_variant MODERATE transcript non_Triplet 95518150 95529244 11095 4 0.0360522757999099 RFvsST 39675 193393919 193354245 no 57.5950544007218 TraesCS2D01G154100 chr2D_97273107 chr2D 97273107 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 97273800 97276305 2506 1 0.0399042298483639 RFvsST 39675 193393919 193354245 no 46.90272447517 TraesCS2D01G154800 chr2D_98269184 chr2D 98269184 C T C T 3 missense_variant MODERATE transcript unique_Triplet 98267014 98270285 3272 4 0.122249388753056 RFvsST 39675 193393919 193354245 no 61.1156313588206 TraesCS2D01G154800 chr2D_98267314 chr2D 98267314 T T C C 4 synonymous_variant LOW transcript unique_Triplet 98267014 98270285 3272 4 0.122249388753056 RFvsST 39675 193393919 193354245 no 61.1156313588206 TraesCS2D01G154800 chr2D_98267262 chr2D 98267262 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 98267014 98270285 3272 4 0.122249388753056 RFvsST 39675 193393919 193354245 no 61.1156313588206 TraesCS2D01G154800 chr2D_98270134 chr2D 98270134 T T C C 4 synonymous_variant LOW transcript unique_Triplet 98267014 98270285 3272 4 0.122249388753056 RFvsST 39675 193393919 193354245 no 61.1156313588206 TraesCS2D01G155200 chr2D_98907814 chr2D 98907814 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98908464 chr2D 98908464 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98906882 chr2D 98906882 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98908420 chr2D 98908420 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98904364 chr2D 98904364 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98908355 chr2D 98908355 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98904537 chr2D 98904537 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98906440 chr2D 98906440 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98906680 chr2D 98906680 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155200 chr2D_98907560 chr2D 98907560 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 98903980 98907449 3470 10 0.288184438040346 RFvsST 39675 193393919 193354245 no 2134.15701246563 TraesCS2D01G155500 chr2D_99132311 chr2D 99132311 T T C C 4 synonymous_variant LOW transcript unique_Triplet 99130553 99132340 1788 3 0.167785234899329 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G155500 chr2D_99132370 chr2D 99132370 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 99130553 99132340 1788 3 0.167785234899329 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G155500 chr2D_99130720 chr2D 99130720 A A G G 4 synonymous_variant LOW transcript unique_Triplet 99130553 99132340 1788 3 0.167785234899329 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G155700 chr2D_99136529 chr2D 99136529 A A T T 4 synonymous_variant LOW transcript unique_Triplet 99135126 99139363 4238 1 0.0235960358659745 RFvsST 39675 193393919 193354245 no 11.4643438134764 TraesCS2D01G156300 chr2D_99684982 chr2D 99684982 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 99683359 99683970 612 1 0.163398692810458 RFvsST 39675 193393919 193354245 no No_match TraesCS2D01G158600 chr2D_102285317 chr2D 102285317 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 102279819 102281249 1431 1 0.0698812019566736 RFvsST 39675 193393919 193354245 no 61.1702949799944 TraesCS2D01G161300 chr2D_106261552 chr2D 106261552 T A T A 3 synonymous_variant LOW transcript unique_Triplet 106259181 106263814 4634 1 0.0215796288303841 RFvsST 39675 193393919 193354245 no 125.785791730372 TraesCS2D01G168500 chr2D_112541784 chr2D 112541784 C T C T 3 missense_variant MODERATE transcript unique_Triplet 112540841 112547468 6628 1 0.0150875075437538 RFvsST 39675 193393919 193354245 no 225.263813636835 TraesCS2D01G170600 chr2D_114547551 chr2D 114547551 T C T C 3 missense_variant MODERATE transcript unique_Triplet 114547405 114549426 2022 1 0.0494559841740851 RFvsST 39675 193393919 193354245 no 96.4689443290951 TraesCS2D01G172200 chr2D_115958331 chr2D 115958331 G G A A 4 synonymous_variant LOW transcript unique_Triplet 115958073 115959248 1176 1 0.0850340136054422 RFvsST 39675 193393919 193354245 no 54.5595463112429 TraesCS2D01G174300 chr2D_117835536 chr2D 117835536 T T G G 4 missense_variant MODERATE transcript unique_Triplet 117832797 117835599 2803 1 0.0356760613628255 RFvsST 39675 193393919 193354245 no 21.4858441436231 TraesCS2D01G178200 chr2D_121780744 chr2D 121780744 G G A A 4 missense_variant MODERATE transcript unique_Triplet 121774351 121783810 9460 1 0.0105708245243129 RFvsST 39675 193393919 193354245 no 114.769864689603 TraesCS2D01G179400 chr2D_123213900 chr2D 123213900 C C A A 4 missense_variant MODERATE transcript unique_Triplet 123213338 123218080 4743 1 0.0210837022981235 RFvsST 39675 193393919 193354245 no 244.873465397908 TraesCS2D01G180700 chr2D_125325024 chr2D 125325024 G T G T 3 missense_variant MODERATE transcript unique_Triplet 125324417 125325094 678 1 0.147492625368732 RFvsST 39675 193393919 193354245 no 226.739790675327 TraesCS2D01G190400 chr2D_134401577 chr2D 134401577 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 134398807 134401261 2455 1 0.0407331975560081 RFvsST 39675 193393919 193354245 no 898.440213774323 TraesCS2D01G194200 chr2D_139112869 chr2D 139112869 G G A A 4 synonymous_variant LOW transcript unique_Triplet 139108946 139113039 4094 1 0.0244259892525647 RFvsST 39675 193393919 193354245 no 61.9491328972215 TraesCS2D01G241300 chr2D_261733884 chr2D 261733884 T T C C 4 missense_variant MODERATE transcript non_Triplet 261733580 261747770 14191 1 0.00704671975195546 RFvsST 168234646 427946437 259711792 no 234.051646977714 TraesCS2D01G242000 chr2D_267706316 chr2D 267706316 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 267693819 267702584 8766 1 0.0114077116130504 RFvsST 168234646 427946437 259711792 no 174.371782862754 TraesCS2D01G252700 chr2D_304659459 chr2D 304659459 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 304655748 304661543 5796 1 0.0172532781228433 RFvsST 168234646 427946437 259711792 no 463.425882621117 TraesCS2D01G254300 chr2D_306493496 chr2D 306493496 T C T C 3 missense_variant MODERATE transcript unique_Triplet 306489858 306494293 4436 1 0.0225428313796213 RFvsST 168234646 427946437 259711792 no 366.749493734663 TraesCS2D01G265800 chr2D_324593736 chr2D 324593736 A G A G 3 missense_variant MODERATE transcript unique_Triplet 324593240 324594517 1278 1 0.0782472613458529 RFvsST 168234646 427946437 259711792 no 371.105406325729 TraesCS2D01G266600 chr2D_325361336 chr2D 325361336 G T G T 3 missense_variant MODERATE transcript unique_Triplet 325360159 325365083 4925 1 0.0203045685279188 RFvsST 168234646 427946437 259711792 no 719.054991848737 TraesCS2D01G269400 chr2D_331602915 chr2D 331602915 C C A A 4 synonymous_variant LOW transcript unique_Triplet 331602439 331615053 12615 1 0.00792707094728498 RFvsST 168234646 427946437 259711792 no 74.2091471344027 TraesCS2D01G281500 chr2D_354743695 chr2D 354743695 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 354740244 354743544 3301 1 0.0302938503483793 RFvsST 168234646 427946437 259711792 no 246.761054904603 TraesCS2D01G283100 chr2D_355987906 chr2D 355987906 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 355986206 355988407 2202 1 0.0454132606721163 RFvsST 168234646 427946437 259711792 no 429.014238613135 TraesCS2D01G293800 chr2D_376320591 chr2D 376320591 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 376318025 376324697 6673 1 0.0149857635246516 RFvsST 168234646 427946437 259711792 no 536.06935195191 TraesCS2D01G299200 chr2D_381202672 chr2D 381202672 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 381192630 381198300 5671 1 0.0176335743255158 RFvsST 168234646 427946437 259711792 no 53.5077804173879 TraesCS2D01G299800 chr2D_382170401 chr2D 382170401 A A G G 4 missense_variant MODERATE transcript unique_Triplet 382168202 382171139 2938 1 0.0340367597004765 RFvsST 168234646 427946437 259711792 no 103.16373759818 TraesCS2D01G410200 chr2D_524584304 chr2D 524584304 A A C C 4 missense_variant MODERATE transcript non_Triplet 524583500 524584755 1256 1 0.0796178343949045 RFvsST 479179070 603923340 124744271 no 122.980589737982 TraesCS2D01G423700 chr2D_536920737 chr2D 536920737 C C A A 4 missense_variant MODERATE transcript unique_Triplet 536919598 536922058 2461 1 0.0406338886631451 RFvsST 479179070 603923340 124744271 no 279.187781600717 TraesCS2D01G439900 chr2D_549509858 chr2D 549509858 G A G A 3 synonymous_variant LOW transcript non_Triplet 549508061 549510748 2688 1 0.037202380952381 RFvsST 479179070 603923340 124744271 no 29.067570361101 TraesCS2D01G442000 chr2D_552192901 chr2D 552192901 G G A A 4 missense_variant MODERATE transcript unique_Triplet 552192520 552195005 2486 1 0.0402252614641995 RFvsST 479179070 603923340 124744271 no 755.30360636031 TraesCS2D01G442100 chr2D_552203846 chr2D 552203846 G C G C 3 stop_gained HIGH transcript non_Triplet 552200097 552204364 4268 1 0.0234301780693533 RFvsST 479179070 603923340 124744271 no 558.244473805028 TraesCS2D01G451100 chr2D_560963060 chr2D 560963060 T C T C 3 synonymous_variant LOW transcript unique_Triplet 560958016 560965760 7745 1 0.012911555842479 RFvsST 479179070 603923340 124744271 no 983.695795755167 TraesCS2D01G456600 chr2D_564385169 chr2D 564385169 C T C T 3 missense_variant MODERATE transcript unique_Triplet 564383868 564386216 2349 1 0.042571306939123 RFvsST 479179070 603923340 124744271 no 61.9041859162391 TraesCS2D01G464300 chr2D_569956451 chr2D 569956451 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 569948289 569952914 4626 1 0.0216169476869866 RFvsST 479179070 603923340 124744271 no 448.177949368147 TraesCS2D01G515900 chr2D_607283642 chr2D 607283642 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 607283710 607284429 720 1 0.138888888888889 RFvsST 572254950 651693283 79438334 no 171.14569098208 TraesCS2D01G516000 chr2D_607422138 chr2D 607422138 C G C G 3 missense_variant MODERATE transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607423420 chr2D 607423420 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607422355 chr2D 607422355 G C G C 3 missense_variant MODERATE transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607422568 chr2D 607422568 G A G A 3 missense_variant MODERATE transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607421993 chr2D 607421993 T C T C 3 synonymous_variant LOW transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607421759 chr2D 607421759 T A T A 3 missense_variant MODERATE transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607421706 chr2D 607421706 T A T A 3 synonymous_variant LOW transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516000 chr2D_607421686 chr2D 607421686 C A C A 3 missense_variant MODERATE transcript unique_Triplet 607418500 607423378 4879 8 0.163968026234884 RFvsST 572254950 651693283 79438334 no 765.229213836295 TraesCS2D01G516500 chr2D_607933440 chr2D 607933440 T C T C 3 synonymous_variant LOW transcript unique_Triplet 607933282 607938058 4777 1 0.0209336403600586 RFvsST 572254950 651693283 79438334 no 63.1030550549546 TraesCS2D01G517200 chr2D_608199703 chr2D 608199703 A C A C 3 synonymous_variant LOW transcript unique_Triplet 608196858 608200619 3762 5 0.13290802764487 RFvsST 572254950 651693283 79438334 no 559.783853462253 TraesCS2D01G517200 chr2D_608198957 chr2D 608198957 A C A C 3 missense_variant MODERATE transcript unique_Triplet 608196858 608200619 3762 5 0.13290802764487 RFvsST 572254950 651693283 79438334 no 559.783853462253 TraesCS2D01G517200 chr2D_608196798 chr2D 608196798 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 608196858 608200619 3762 5 0.13290802764487 RFvsST 572254950 651693283 79438334 no 559.783853462253 TraesCS2D01G517200 chr2D_608199256 chr2D 608199256 C T C T 3 synonymous_variant LOW transcript unique_Triplet 608196858 608200619 3762 5 0.13290802764487 RFvsST 572254950 651693283 79438334 no 559.783853462253 TraesCS2D01G517200 chr2D_608200490 chr2D 608200490 T C T C 3 synonymous_variant LOW transcript unique_Triplet 608196858 608200619 3762 5 0.13290802764487 RFvsST 572254950 651693283 79438334 no 559.783853462253 TraesCS2D01G517700 chr2D_608483874 chr2D 608483874 C A C A 3 missense_variant MODERATE transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G517700 chr2D_608484156 chr2D 608484156 C G C G 3 synonymous_variant LOW transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G517700 chr2D_608483652 chr2D 608483652 T C T C 3 synonymous_variant LOW transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G517700 chr2D_608483629 chr2D 608483629 G A G A 3 missense_variant MODERATE transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G517700 chr2D_608483966 chr2D 608483966 C G C G 3 missense_variant MODERATE transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G517700 chr2D_608483871 chr2D 608483871 C T C T 3 synonymous_variant LOW transcript unique_Triplet 608481967 608484213 2247 6 0.267022696929239 RFvsST 572254950 651693283 79438334 no 87.4262261290517 TraesCS2D01G519000 chr2D_608918841 chr2D 608918841 T C T C 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 608915861 608923459 7599 1 0.013159626266614 RFvsST 572254950 651693283 79438334 no 292.647527220319 TraesCS2D01G542300 chr2D_620884712 chr2D 620884712 G G A A 4 missense_variant MODERATE transcript non_Triplet 620883364 620884851 1488 1 0.0672043010752688 RFvsST 572254950 651693283 79438334 no 307.355169268965 TraesCS2D01G547900 chr2D_624093824 chr2D 624093824 T C T C 3 missense_variant MODERATE transcript unique_Triplet 624093763 624095411 1649 1 0.0606428138265616 RFvsST 572254950 651693283 79438334 no 212.202716711303 TraesCS2D01G553800 chr2D_628290343 chr2D 628290343 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 628287950 628288201 252 1 0.396825396825397 RFvsST 572254950 651693283 79438334 no No_match TraesCS2D01G566400 chr2D_635597195 chr2D 635597195 C G C G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 635593638 635597381 3744 1 0.0267094017094017 RFvsST 572254950 651693283 79438334 no 52.3803815045491 TraesCS2D01G566500 chr2D_635600312 chr2D 635600312 G T G T 3 synonymous_variant LOW transcript non_Triplet 635597912 635601654 3743 4 0.106866150146941 RFvsST 572254950 651693283 79438334 no 177.996191901694 TraesCS2D01G566500 chr2D_635598019 chr2D 635598019 A G A G 3 synonymous_variant LOW transcript non_Triplet 635597912 635601654 3743 4 0.106866150146941 RFvsST 572254950 651693283 79438334 no 177.996191901694 TraesCS2D01G566500 chr2D_635598032 chr2D 635598032 G A G A 3 synonymous_variant LOW transcript non_Triplet 635597912 635601654 3743 4 0.106866150146941 RFvsST 572254950 651693283 79438334 no 177.996191901694 TraesCS2D01G566500 chr2D_635600330 chr2D 635600330 C G C G 3 synonymous_variant LOW transcript non_Triplet 635597912 635601654 3743 4 0.106866150146941 RFvsST 572254950 651693283 79438334 no 177.996191901694 TraesCS2D01G567100 chr2D_635790441 chr2D 635790441 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 635787922 635790282 2361 3 0.127064803049555 RFvsST 572254950 651693283 79438334 no 43.5455744698545 TraesCS2D01G567100 chr2D_635788236 chr2D 635788236 C G C G 3 synonymous_variant LOW transcript non_Triplet 635787922 635790282 2361 3 0.127064803049555 RFvsST 572254950 651693283 79438334 no 43.5455744698545 TraesCS2D01G567100 chr2D_635790207 chr2D 635790207 A G A G 3 synonymous_variant LOW transcript non_Triplet 635787922 635790282 2361 3 0.127064803049555 RFvsST 572254950 651693283 79438334 no 43.5455744698545 TraesCS2D01G567600 chr2D_635952317 chr2D 635952317 G A G A 3 synonymous_variant LOW transcript non_Triplet 635950365 635953054 2690 3 0.111524163568773 RFvsST 572254950 651693283 79438334 no 19.638149269576 TraesCS2D01G567600 chr2D_635950428 chr2D 635950428 T C T C 3 synonymous_variant LOW transcript non_Triplet 635950365 635953054 2690 3 0.111524163568773 RFvsST 572254950 651693283 79438334 no 19.638149269576 TraesCS2D01G567600 chr2D_635951594 chr2D 635951594 T G T G 3 synonymous_variant LOW transcript non_Triplet 635950365 635953054 2690 3 0.111524163568773 RFvsST 572254950 651693283 79438334 no 19.638149269576 TraesCS2D01G570300 chr2D_637516430 chr2D 637516430 A G A G 3 synonymous_variant LOW transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516693 chr2D 637516693 A C A C 3 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637518330 chr2D 637518330 C T C T 3 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637518196 chr2D 637518196 C A C A 3 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516678 chr2D 637516678 G G C C 4 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516670 chr2D 637516670 T C T C 3 synonymous_variant LOW transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637517977 chr2D 637517977 A G A G 3 synonymous_variant LOW transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516396 chr2D 637516396 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516393 chr2D 637516393 G C G C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637516808 chr2D 637516808 C C T T 4 synonymous_variant LOW transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637518120 chr2D 637518120 C C A A 4 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637518322 chr2D 637518322 A G A G 3 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570300 chr2D_637518177 chr2D 637518177 T G T G 3 missense_variant MODERATE transcript non_Triplet 637515454 637518621 3168 13 0.410353535353535 RFvsST 572254950 651693283 79438334 no 143.099624489206 TraesCS2D01G570400 chr2D_637520501 chr2D 637520501 A G A G 3 synonymous_variant LOW transcript unique_Triplet 637520079 637522283 2205 3 0.136054421768707 RFvsST 572254950 651693283 79438334 no 19.9264216277226 TraesCS2D01G570400 chr2D_637520495 chr2D 637520495 C C G G 4 synonymous_variant LOW transcript unique_Triplet 637520079 637522283 2205 3 0.136054421768707 RFvsST 572254950 651693283 79438334 no 19.9264216277226 TraesCS2D01G570400 chr2D_637520476 chr2D 637520476 C C T T 4 missense_variant MODERATE transcript unique_Triplet 637520079 637522283 2205 3 0.136054421768707 RFvsST 572254950 651693283 79438334 no 19.9264216277226 TraesCS2D01G570900 chr2D_637632856 chr2D 637632856 G G A A 4 synonymous_variant LOW transcript unique_Triplet 637631749 637634199 2451 3 0.122399020807834 RFvsST 572254950 651693283 79438334 no No_match TraesCS2D01G570900 chr2D_637633705 chr2D 637633705 G G C C 4 synonymous_variant LOW transcript unique_Triplet 637631749 637634199 2451 3 0.122399020807834 RFvsST 572254950 651693283 79438334 no No_match TraesCS2D01G570900 chr2D_637633098 chr2D 637633098 T G T G 3 synonymous_variant LOW transcript unique_Triplet 637631749 637634199 2451 3 0.122399020807834 RFvsST 572254950 651693283 79438334 no No_match TraesCS2D01G571200 chr2D_637651181 chr2D 637651181 A C A C 3 synonymous_variant LOW transcript unique_Triplet 637649965 637651991 2027 3 0.148001973359645 RFvsST 572254950 651693283 79438334 no 87.2839928459233 TraesCS2D01G571200 chr2D_637651466 chr2D 637651466 G G T T 4 synonymous_variant LOW transcript unique_Triplet 637649965 637651991 2027 3 0.148001973359645 RFvsST 572254950 651693283 79438334 no 87.2839928459233 TraesCS2D01G571200 chr2D_637651529 chr2D 637651529 C C T T 4 synonymous_variant LOW transcript unique_Triplet 637649965 637651991 2027 3 0.148001973359645 RFvsST 572254950 651693283 79438334 no 87.2839928459233 TraesCS2D01G571300 chr2D_637656371 chr2D 637656371 G T G T 3 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637652763 chr2D 637652763 T T A A 4 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637656362 chr2D 637656362 A T A T 3 missense_variant MODERATE transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637655137 chr2D 637655137 A G A G 3 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637653704 chr2D 637653704 A G A G 3 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637653869 chr2D 637653869 A A T T 4 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637656192 chr2D 637656192 C T C T 3 missense_variant MODERATE transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637658053 chr2D 637658053 G A G A 3 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637653676 chr2D 637653676 G T G T 3 missense_variant MODERATE transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571300 chr2D_637652802 chr2D 637652802 T C T C 3 synonymous_variant LOW transcript unique_Triplet 637652667 637658388 5722 10 0.174764068507515 RFvsST 572254950 651693283 79438334 no 448.282890203136 TraesCS2D01G571700 chr2D_637901479 chr2D 637901479 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 637901481 637904645 3165 4 0.126382306477093 RFvsST 572254950 651693283 79438334 no 227.612404881041 TraesCS2D01G571700 chr2D_637901813 chr2D 637901813 C C T T 4 synonymous_variant LOW transcript non_Triplet 637901481 637904645 3165 4 0.126382306477093 RFvsST 572254950 651693283 79438334 no 227.612404881041 TraesCS2D01G571700 chr2D_637902082 chr2D 637902082 C C G G 4 missense_variant MODERATE transcript non_Triplet 637901481 637904645 3165 4 0.126382306477093 RFvsST 572254950 651693283 79438334 no 227.612404881041 TraesCS2D01G571700 chr2D_637904069 chr2D 637904069 C G C G 3 synonymous_variant LOW transcript non_Triplet 637901481 637904645 3165 4 0.126382306477093 RFvsST 572254950 651693283 79438334 no 227.612404881041 TraesCS2D01G572300 chr2D_638309547 chr2D 638309547 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638309703 638310137 435 3 0.689655172413793 RFvsST 572254950 651693283 79438334 no 399.606289352974 TraesCS2D01G572300 chr2D_638309559 chr2D 638309559 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638309703 638310137 435 3 0.689655172413793 RFvsST 572254950 651693283 79438334 no 399.606289352974 TraesCS2D01G572300 chr2D_638309631 chr2D 638309631 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638309703 638310137 435 3 0.689655172413793 RFvsST 572254950 651693283 79438334 no 399.606289352974 TraesCS2D01G572700 chr2D_638367655 chr2D 638367655 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638367796 chr2D 638367796 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638367727 chr2D 638367727 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638367648 chr2D 638367648 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638372986 chr2D 638372986 A G A G 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638370873 chr2D 638370873 C T C T 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638367606 chr2D 638367606 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638367707 chr2D 638367707 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638372415 chr2D 638372415 A G A G 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638373656 chr2D 638373656 G C G C 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638371979 chr2D 638371979 A G A G 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638374910 chr2D 638374910 C T C T 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638372956 chr2D 638372956 A C A C 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G572700 chr2D_638370861 chr2D 638370861 T C T C 3 synonymous_variant LOW transcript unique_Triplet 638368029 638378283 10255 14 0.136518771331058 RFvsST 572254950 651693283 79438334 no 25.5974007514798 TraesCS2D01G573300 chr2D_638438788 chr2D 638438788 A G A G 3 synonymous_variant LOW transcript non_Triplet 638438074 638440017 1944 3 0.154320987654321 RFvsST 572254950 651693283 79438334 no 152.981240750473 TraesCS2D01G573300 chr2D_638438555 chr2D 638438555 C T C T 3 synonymous_variant LOW transcript non_Triplet 638438074 638440017 1944 3 0.154320987654321 RFvsST 572254950 651693283 79438334 no 152.981240750473 TraesCS2D01G573300 chr2D_638439149 chr2D 638439149 C G C G 3 missense_variant MODERATE transcript non_Triplet 638438074 638440017 1944 3 0.154320987654321 RFvsST 572254950 651693283 79438334 no 152.981240750473 TraesCS2D01G587800 chr2D_645612796 chr2D 645612796 G A G A 3 synonymous_variant LOW transcript unique_Triplet 645611598 645614422 2825 1 0.0353982300884956 RFvsST 572254950 651693283 79438334 no 289.25972693063 TraesCS2D01G587900 chr2D_645651400 chr2D 645651400 A A C C 4 missense_variant MODERATE transcript non_Triplet 645651316 645652331 1016 1 0.0984251968503937 RFvsST 572254950 651693283 79438334 no 73.388117547534 TraesCS2D01G592000 chr2D_647233906 chr2D 647233906 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 647232980 647233837 858 2 0.233100233100233 RFvsST 572254950 651693283 79438334 no 69.1565510168442 TraesCS2D01G592000 chr2D_647233690 chr2D 647233690 G T G T 3 missense_variant MODERATE transcript non_Triplet 647232980 647233837 858 2 0.233100233100233 RFvsST 572254950 651693283 79438334 no 69.1565510168442 TraesCS2D01G592100 chr2D_647286180 chr2D 647286180 G G A A 4 synonymous_variant LOW transcript unique_Triplet 647278261 647287112 8852 1 0.0112968820605513 RFvsST 572254950 651693283 79438334 no 979.634582850206 TraesCS2D01G599800 chr2D_650883071 chr2D 650883071 C G C G 3 missense_variant MODERATE transcript non_Triplet 650880126 650883516 3391 1 0.0294898260100265 RFvsST 572254950 651693283 79438334 no 101.842771233395 TraesCS3A01G001500 chr3A_1030533 chr3A 1030533 T T A A 4 missense_variant MODERATE transcript unique_Triplet 1028539 1031377 2839 4 0.140894681225784 RFvsST 177437 107975162 107797726 no 93.895834463638 TraesCS3A01G001500 chr3A_1030298 chr3A 1030298 G G A A 4 synonymous_variant LOW transcript unique_Triplet 1028539 1031377 2839 4 0.140894681225784 RFvsST 177437 107975162 107797726 no 93.895834463638 TraesCS3A01G001500 chr3A_1028506 chr3A 1028506 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 1028539 1031377 2839 4 0.140894681225784 RFvsST 177437 107975162 107797726 no 93.895834463638 TraesCS3A01G001500 chr3A_1031400 chr3A 1031400 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 1028539 1031377 2839 4 0.140894681225784 RFvsST 177437 107975162 107797726 no 93.895834463638 TraesCS3A01G001600 chr3A_1055370 chr3A 1055370 C T C T 3 missense_variant MODERATE transcript unique_Triplet 1055242 1059496 4255 3 0.0705052878965922 RFvsST 177437 107975162 107797726 no 98.3701361695207 TraesCS3A01G001600 chr3A_1058171 chr3A 1058171 C G C G 3 missense_variant MODERATE transcript unique_Triplet 1055242 1059496 4255 3 0.0705052878965922 RFvsST 177437 107975162 107797726 no 98.3701361695207 TraesCS3A01G001600 chr3A_1055388 chr3A 1055388 A C A C 3 missense_variant MODERATE transcript unique_Triplet 1055242 1059496 4255 3 0.0705052878965922 RFvsST 177437 107975162 107797726 no 98.3701361695207 TraesCS3A01G001700 chr3A_1309199 chr3A 1309199 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 1304513 1309003 4491 2 0.0445335114673792 RFvsST 177437 107975162 107797726 no 1433.24342441447 TraesCS3A01G001700 chr3A_1304482 chr3A 1304482 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 1304513 1309003 4491 2 0.0445335114673792 RFvsST 177437 107975162 107797726 no 1433.24342441447 TraesCS3A01G001800 chr3A_1315661 chr3A 1315661 C C G G 4 synonymous_variant LOW transcript non_Triplet 1313413 1315789 2377 5 0.210349179638199 RFvsST 177437 107975162 107797726 no 7.23376550986287 TraesCS3A01G001800 chr3A_1315730 chr3A 1315730 C G C G 3 synonymous_variant LOW transcript non_Triplet 1313413 1315789 2377 5 0.210349179638199 RFvsST 177437 107975162 107797726 no 7.23376550986287 TraesCS3A01G001800 chr3A_1315731 chr3A 1315731 G C G C 3 missense_variant MODERATE transcript non_Triplet 1313413 1315789 2377 5 0.210349179638199 RFvsST 177437 107975162 107797726 no 7.23376550986287 TraesCS3A01G001800 chr3A_1315703 chr3A 1315703 C G C G 3 synonymous_variant LOW transcript non_Triplet 1313413 1315789 2377 5 0.210349179638199 RFvsST 177437 107975162 107797726 no 7.23376550986287 TraesCS3A01G001800 chr3A_1315718 chr3A 1315718 G C G C 3 synonymous_variant LOW transcript non_Triplet 1313413 1315789 2377 5 0.210349179638199 RFvsST 177437 107975162 107797726 no 7.23376550986287 TraesCS3A01G002100 chr3A_1382702 chr3A 1382702 T C T C 3 synonymous_variant LOW transcript non_Triplet 1380918 1383491 2574 4 0.155400155400155 RFvsST 177437 107975162 107797726 no 146.209815348957 TraesCS3A01G002100 chr3A_1382175 chr3A 1382175 G G A A 4 missense_variant MODERATE transcript non_Triplet 1380918 1383491 2574 4 0.155400155400155 RFvsST 177437 107975162 107797726 no 146.209815348957 TraesCS3A01G002100 chr3A_1382940 chr3A 1382940 G G C C 4 missense_variant MODERATE transcript non_Triplet 1380918 1383491 2574 4 0.155400155400155 RFvsST 177437 107975162 107797726 no 146.209815348957 TraesCS3A01G002100 chr3A_1381620 chr3A 1381620 G G T T 4 missense_variant MODERATE transcript non_Triplet 1380918 1383491 2574 4 0.155400155400155 RFvsST 177437 107975162 107797726 no 146.209815348957 TraesCS3A01G002300 chr3A_1393243 chr3A 1393243 A A G G 4 synonymous_variant LOW transcript non_Triplet 1392894 1394145 1252 2 0.159744408945687 RFvsST 177437 107975162 107797726 no 47.8650746828043 TraesCS3A01G002300 chr3A_1393903 chr3A 1393903 G G T T 4 synonymous_variant LOW transcript non_Triplet 1392894 1394145 1252 2 0.159744408945687 RFvsST 177437 107975162 107797726 no 47.8650746828043 TraesCS3A01G003800 chr3A_1922373 chr3A 1922373 T T C C 4 synonymous_variant LOW transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1923443 chr3A 1923443 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1919534 chr3A 1919534 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1922992 chr3A 1922992 C C T T 4 synonymous_variant LOW transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1920123 chr3A 1920123 T T C C 4 missense_variant MODERATE transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1922729 chr3A 1922729 A A T T 4 synonymous_variant LOW transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1920208 chr3A 1920208 A A G G 4 synonymous_variant LOW transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1923438 chr3A 1923438 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1922747 chr3A 1922747 C C T T 4 synonymous_variant LOW transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G003800 chr3A_1922704 chr3A 1922704 G G T T 4 missense_variant MODERATE transcript unique_Triplet 1919555 1923009 3455 10 0.289435600578871 RFvsST 177437 107975162 107797726 no 34.5477287588411 TraesCS3A01G005900 chr3A_7201521 chr3A 7201521 G G T T 4 missense_variant MODERATE transcript unique_Triplet 7200714 7201717 1004 4 0.398406374501992 RFvsST 177437 107975162 107797726 no 264.226314656681 TraesCS3A01G005900 chr3A_7200716 chr3A 7200716 A A G G 4 stop_lost&splice_region_variant HIGH transcript unique_Triplet 7200714 7201717 1004 4 0.398406374501992 RFvsST 177437 107975162 107797726 no 264.226314656681 TraesCS3A01G005900 chr3A_7200619 chr3A 7200619 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 7200714 7201717 1004 4 0.398406374501992 RFvsST 177437 107975162 107797726 no 264.226314656681 TraesCS3A01G005900 chr3A_7200705 chr3A 7200705 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 7200714 7201717 1004 4 0.398406374501992 RFvsST 177437 107975162 107797726 no 264.226314656681 TraesCS3A01G006100 chr3A_7259035 chr3A 7259035 C C T T 4 synonymous_variant LOW transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7255346 chr3A 7255346 C C T T 4 synonymous_variant LOW transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7256501 chr3A 7256501 G C G C 3 missense_variant MODERATE transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7257962 chr3A 7257962 A C A C 3 synonymous_variant LOW transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7256681 chr3A 7256681 G G A A 4 missense_variant MODERATE transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7259878 chr3A 7259878 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7259759 chr3A 7259759 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7256930 chr3A 7256930 G A G A 3 missense_variant MODERATE transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G006100 chr3A_7259063 chr3A 7259063 G G A A 4 missense_variant MODERATE transcript non_Triplet 7254336 7259923 5588 9 0.161059413027917 RFvsST 177437 107975162 107797726 no 397.079361319866 TraesCS3A01G007000 chr3A_7432447 chr3A 7432447 G G C C 4 missense_variant MODERATE transcript non_Triplet 7432258 7432761 504 3 0.595238095238095 RFvsST 177437 107975162 107797726 no 197.856800343388 TraesCS3A01G007000 chr3A_7432348 chr3A 7432348 C T C T 3 synonymous_variant LOW transcript non_Triplet 7432258 7432761 504 3 0.595238095238095 RFvsST 177437 107975162 107797726 no 197.856800343388 TraesCS3A01G007000 chr3A_7432689 chr3A 7432689 T C T C 3 missense_variant MODERATE transcript non_Triplet 7432258 7432761 504 3 0.595238095238095 RFvsST 177437 107975162 107797726 no 197.856800343388 TraesCS3A01G009600 chr3A_8686501 chr3A 8686501 C C T T 4 synonymous_variant LOW transcript unique_Triplet 8682422 8686801 4380 4 0.091324200913242 RFvsST 177437 107975162 107797726 no 197.161685403236 TraesCS3A01G009600 chr3A_8686393 chr3A 8686393 T A G G,A 6 synonymous_variant LOW transcript unique_Triplet 8682422 8686801 4380 4 0.091324200913242 RFvsST 177437 107975162 107797726 no 197.161685403236 TraesCS3A01G009600 chr3A_8686071 chr3A 8686071 A A G G 4 missense_variant MODERATE transcript unique_Triplet 8682422 8686801 4380 4 0.091324200913242 RFvsST 177437 107975162 107797726 no 197.161685403236 TraesCS3A01G009600 chr3A_8686999 chr3A 8686999 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 8682422 8686801 4380 4 0.091324200913242 RFvsST 177437 107975162 107797726 no 197.161685403236 TraesCS3A01G010000 chr3A_8865387 chr3A 8865387 C C T T 4 synonymous_variant LOW transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8864098 chr3A 8864098 A A T T 4 synonymous_variant LOW transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8865312 chr3A 8865312 A G A G 3 synonymous_variant LOW transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8864192 chr3A 8864192 T T C C 4 synonymous_variant LOW transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8863566 chr3A 8863566 C C A A 4 missense_variant MODERATE transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8863921 chr3A 8863921 T T G G 4 missense_variant MODERATE transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010000 chr3A_8863569 chr3A 8863569 A A G G 4 missense_variant MODERATE transcript unique_Triplet 8863515 8865396 1882 7 0.371944739638682 RFvsST 177437 107975162 107797726 no 49.7856139792368 TraesCS3A01G010100 chr3A_8867544 chr3A 8867544 C T C T 3 synonymous_variant LOW transcript unique_Triplet 8866469 8869406 2938 2 0.068073519400953 RFvsST 177437 107975162 107797726 no 96.5110375960215 TraesCS3A01G010100 chr3A_8867492 chr3A 8867492 C T C T 3 missense_variant MODERATE transcript unique_Triplet 8866469 8869406 2938 2 0.068073519400953 RFvsST 177437 107975162 107797726 no 96.5110375960215 TraesCS3A01G010300 chr3A_8909590 chr3A 8909590 G T G T 3 missense_variant MODERATE transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G010300 chr3A_8910046 chr3A 8910046 A G A G 3 synonymous_variant LOW transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G010300 chr3A_8908864 chr3A 8908864 A A C C 4 missense_variant MODERATE transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G010300 chr3A_8908882 chr3A 8908882 C C T T 4 synonymous_variant LOW transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G010300 chr3A_8909791 chr3A 8909791 G G C C 4 synonymous_variant LOW transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G010300 chr3A_8910021 chr3A 8910021 G G A A,C 4 missense_variant MODERATE transcript unique_Triplet 8907860 8910450 2591 6 0.231570822076418 RFvsST 177437 107975162 107797726 no 153.577088226662 TraesCS3A01G012300 chr3A_9549032 chr3A 9549032 A A T T 4 missense_variant MODERATE transcript unique_Triplet 9546620 9550260 3641 2 0.0549299642955232 RFvsST 177437 107975162 107797726 no 222.14236721439 TraesCS3A01G012300 chr3A_9549097 chr3A 9549097 G A G A 3 synonymous_variant LOW transcript unique_Triplet 9546620 9550260 3641 2 0.0549299642955232 RFvsST 177437 107975162 107797726 no 222.14236721439 TraesCS3A01G013700 chr3A_9844365 chr3A 9844365 A T A T 3 missense_variant MODERATE transcript non_Triplet 9843686 9846483 2798 2 0.0714796283059328 RFvsST 177437 107975162 107797726 no 50.9078994491983 TraesCS3A01G013700 chr3A_9844299 chr3A 9844299 G G A A 4 synonymous_variant LOW transcript non_Triplet 9843686 9846483 2798 2 0.0714796283059328 RFvsST 177437 107975162 107797726 no 50.9078994491983 TraesCS3A01G015000 chr3A_10240252 chr3A 10240252 G C G C 3 missense_variant MODERATE transcript non_Triplet 10239375 10240401 1027 1 0.0973709834469328 RFvsST 177437 107975162 107797726 no 16.1988382865516 TraesCS3A01G015100 chr3A_10246027 chr3A 10246027 A A G G 4 missense_variant MODERATE transcript non_Triplet 10244883 10246304 1422 1 0.070323488045007 RFvsST 177437 107975162 107797726 no 93.738237838935 TraesCS3A01G015500 chr3A_10306900 chr3A 10306900 A T A T 3 synonymous_variant LOW transcript non_Triplet 10300920 10308959 8040 1 0.0124378109452736 RFvsST 177437 107975162 107797726 no 109.613741442825 TraesCS3A01G016200 chr3A_10500437 chr3A 10500437 G A G A 3 missense_variant MODERATE transcript non_Triplet 10499344 10501395 2052 1 0.0487329434697856 RFvsST 177437 107975162 107797726 no 112.756262306224 TraesCS3A01G017100 chr3A_10952522 chr3A 10952522 G G A A 4 synonymous_variant LOW transcript non_Triplet 10951562 10954096 2535 2 0.0788954635108481 RFvsST 177437 107975162 107797726 no 411.349107794467 TraesCS3A01G017100 chr3A_10952262 chr3A 10952262 G A G A 3 missense_variant MODERATE transcript non_Triplet 10951562 10954096 2535 2 0.0788954635108481 RFvsST 177437 107975162 107797726 no 411.349107794467 TraesCS3A01G017200 chr3A_10956805 chr3A 10956805 C C T T 4 synonymous_variant LOW transcript non_Triplet 10954643 10957531 2889 2 0.0692281066112842 RFvsST 177437 107975162 107797726 no 166.74601502261 TraesCS3A01G017200 chr3A_10956793 chr3A 10956793 T T C C 4 synonymous_variant LOW transcript non_Triplet 10954643 10957531 2889 2 0.0692281066112842 RFvsST 177437 107975162 107797726 no 166.74601502261 TraesCS3A01G017800 chr3A_11350750 chr3A 11350750 G G C C 4 missense_variant MODERATE transcript non_Triplet 11349647 11351979 2333 5 0.214316330904415 RFvsST 177437 107975162 107797726 no 25.1757353645081 TraesCS3A01G017800 chr3A_11351873 chr3A 11351873 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 11349647 11351979 2333 5 0.214316330904415 RFvsST 177437 107975162 107797726 no 25.1757353645081 TraesCS3A01G017800 chr3A_11350227 chr3A 11350227 T T C C 4 missense_variant MODERATE transcript non_Triplet 11349647 11351979 2333 5 0.214316330904415 RFvsST 177437 107975162 107797726 no 25.1757353645081 TraesCS3A01G017800 chr3A_11350767 chr3A 11350767 G T G T 3 synonymous_variant LOW transcript non_Triplet 11349647 11351979 2333 5 0.214316330904415 RFvsST 177437 107975162 107797726 no 25.1757353645081 TraesCS3A01G017800 chr3A_11350770 chr3A 11350770 C T C T 3 synonymous_variant LOW transcript non_Triplet 11349647 11351979 2333 5 0.214316330904415 RFvsST 177437 107975162 107797726 no 25.1757353645081 TraesCS3A01G017900 chr3A_11379119 chr3A 11379119 T T C C 4 synonymous_variant LOW transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G017900 chr3A_11382782 chr3A 11382782 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G017900 chr3A_11382781 chr3A 11382781 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G017900 chr3A_11379020 chr3A 11379020 C C A A 4 synonymous_variant LOW transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G017900 chr3A_11382765 chr3A 11382765 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G017900 chr3A_11379026 chr3A 11379026 G G A A 4 synonymous_variant LOW transcript non_Triplet 11378495 11380964 2470 6 0.242914979757085 RFvsST 177437 107975162 107797726 no 262.26467252477 TraesCS3A01G018500 chr3A_11472408 chr3A 11472408 T T C C 4 synonymous_variant LOW transcript non_Triplet 11471664 11472966 1303 1 0.0767459708365311 RFvsST 177437 107975162 107797726 no 217.5972979399 TraesCS3A01G019600 chr3A_11838085 chr3A 11838085 C A C A 3 missense_variant MODERATE transcript unique_Triplet 11838050 11839362 1313 1 0.0761614623000762 RFvsST 177437 107975162 107797726 no 128.17567295186 TraesCS3A01G020300 chr3A_11938713 chr3A 11938713 C G C G 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11941868 chr3A 11941868 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11941212 chr3A 11941212 C T C T 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11939914 chr3A 11939914 T G T G 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11941200 chr3A 11941200 T C T C 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11941182 chr3A 11941182 T C T C 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G020300 chr3A_11941179 chr3A 11941179 T C T C 3 synonymous_variant LOW transcript non_Triplet 11938474 11941817 3344 7 0.20933014354067 RFvsST 177437 107975162 107797726 no 243.841851035987 TraesCS3A01G021200 chr3A_12232451 chr3A 12232451 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12228439 12229158 720 2 0.277777777777778 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G021200 chr3A_12232442 chr3A 12232442 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 12228439 12229158 720 2 0.277777777777778 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G021300 chr3A_12241481 chr3A 12241481 A G A G 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12232660 chr3A 12232660 C A C A 3 missense_variant MODERATE transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12233995 chr3A 12233995 G T G T 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241337 chr3A 12241337 T C T C 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12240300 chr3A 12240300 A A G G 4 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241601 chr3A 12241601 G A G A 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241454 chr3A 12241454 C A C A 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12232997 chr3A 12232997 G T G T 3 missense_variant MODERATE transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241884 chr3A 12241884 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12239590 chr3A 12239590 T C T C 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241338 chr3A 12241338 C A C A 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241397 chr3A 12241397 C G C G 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12240612 chr3A 12240612 C C G G 4 missense_variant MODERATE transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12235362 chr3A 12235362 G A G A 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241394 chr3A 12241394 T G T G 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12239785 chr3A 12239785 G C G C 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12239351 chr3A 12239351 C T C T 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12241253 chr3A 12241253 T T C C 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12239712 chr3A 12239712 T C T C 3 missense_variant MODERATE transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G021300 chr3A_12238918 chr3A 12238918 G T G T 3 synonymous_variant LOW transcript unique_Triplet 12232572 12241760 9189 20 0.217651539884645 RFvsST 177437 107975162 107797726 no 268.843130291019 TraesCS3A01G023800 chr3A_13041516 chr3A 13041516 C T C T 3 missense_variant MODERATE transcript unique_Triplet 13036061 13044194 8134 4 0.049176297024834 RFvsST 177437 107975162 107797726 no 237.854235502368 TraesCS3A01G023800 chr3A_13043372 chr3A 13043372 A A G G 4 synonymous_variant LOW transcript unique_Triplet 13036061 13044194 8134 4 0.049176297024834 RFvsST 177437 107975162 107797726 no 237.854235502368 TraesCS3A01G023800 chr3A_13038070 chr3A 13038070 G G A A 4 synonymous_variant LOW transcript unique_Triplet 13036061 13044194 8134 4 0.049176297024834 RFvsST 177437 107975162 107797726 no 237.854235502368 TraesCS3A01G023800 chr3A_13043403 chr3A 13043403 A A T T 4 synonymous_variant LOW transcript unique_Triplet 13036061 13044194 8134 4 0.049176297024834 RFvsST 177437 107975162 107797726 no 237.854235502368 TraesCS3A01G024200 chr3A_13090428 chr3A 13090428 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 13086294 13087425 1132 1 0.088339222614841 RFvsST 177437 107975162 107797726 no 1024.65163168668 TraesCS3A01G024300 chr3A_13091455 chr3A 13091455 T T G G 4 synonymous_variant LOW transcript non_Triplet 13090506 13091607 1102 1 0.0907441016333938 RFvsST 177437 107975162 107797726 no 1060.85516998544 TraesCS3A01G026600 chr3A_13909243 chr3A 13909243 G T G T 3 missense_variant MODERATE transcript unique_Triplet 13906426 13909607 3182 1 0.0314267756128221 RFvsST 177437 107975162 107797726 no 32.0629068245078 TraesCS3A01G026700 chr3A_14041681 chr3A 14041681 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 14038368 14041796 3429 2 0.0583260425780111 RFvsST 177437 107975162 107797726 no 526.161912731911 TraesCS3A01G026700 chr3A_14041677 chr3A 14041677 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 14038368 14041796 3429 2 0.0583260425780111 RFvsST 177437 107975162 107797726 no 526.161912731911 TraesCS3A01G034400 chr3A_19382317 chr3A 19382317 A A C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 19381540 19382409 870 3 0.344827586206897 RFvsST 177437 107975162 107797726 no 65.828039008262 TraesCS3A01G034400 chr3A_19382015 chr3A 19382015 A A G G 4 missense_variant MODERATE transcript unique_Triplet 19381540 19382409 870 3 0.344827586206897 RFvsST 177437 107975162 107797726 no 65.828039008262 TraesCS3A01G034400 chr3A_19382328 chr3A 19382328 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 19381540 19382409 870 3 0.344827586206897 RFvsST 177437 107975162 107797726 no 65.828039008262 TraesCS3A01G034600 chr3A_19471438 chr3A 19471438 C C G G 4 missense_variant MODERATE transcript non_Triplet 19471388 19491633 20246 4 0.0197569890348711 RFvsST 177437 107975162 107797726 no 396.204977852081 TraesCS3A01G034600 chr3A_19471718 chr3A 19471718 C C T T 4 synonymous_variant LOW transcript non_Triplet 19471388 19491633 20246 4 0.0197569890348711 RFvsST 177437 107975162 107797726 no 396.204977852081 TraesCS3A01G034600 chr3A_19472097 chr3A 19472097 C C T T 4 missense_variant MODERATE transcript non_Triplet 19471388 19491633 20246 4 0.0197569890348711 RFvsST 177437 107975162 107797726 no 396.204977852081 TraesCS3A01G034600 chr3A_19472647 chr3A 19472647 C C G G 4 missense_variant MODERATE transcript non_Triplet 19471388 19491633 20246 4 0.0197569890348711 RFvsST 177437 107975162 107797726 no 396.204977852081 TraesCS3A01G034700 chr3A_19474319 chr3A 19474319 G G T T 4 synonymous_variant LOW transcript non_Triplet 19474073 19474807 735 1 0.136054421768707 RFvsST 177437 107975162 107797726 no 26.1687583534148 TraesCS3A01G035100 chr3A_19485580 chr3A 19485580 G G A A 4 missense_variant MODERATE transcript non_Triplet 19485396 19486274 879 4 0.455062571103527 RFvsST 177437 107975162 107797726 no 99.2716216483967 TraesCS3A01G035100 chr3A_19485806 chr3A 19485806 A A G G 4 synonymous_variant LOW transcript non_Triplet 19485396 19486274 879 4 0.455062571103527 RFvsST 177437 107975162 107797726 no 99.2716216483967 TraesCS3A01G035100 chr3A_19485652 chr3A 19485652 G G A A 4 missense_variant MODERATE transcript non_Triplet 19485396 19486274 879 4 0.455062571103527 RFvsST 177437 107975162 107797726 no 99.2716216483967 TraesCS3A01G035100 chr3A_19485906 chr3A 19485906 T T C C 4 synonymous_variant LOW transcript non_Triplet 19485396 19486274 879 4 0.455062571103527 RFvsST 177437 107975162 107797726 no 99.2716216483967 TraesCS3A01G037600 chr3A_20328760 chr3A 20328760 C T C T 3 synonymous_variant LOW transcript unique_Triplet 20325650 20329466 3817 1 0.0261985852763951 RFvsST 177437 107975162 107797726 no 101.056914508798 TraesCS3A01G038500 chr3A_20718630 chr3A 20718630 A A G G 4 synonymous_variant LOW transcript non_Triplet 20718318 20728567 10250 1 0.00975609756097561 RFvsST 177437 107975162 107797726 no 125.708899643339 TraesCS3A01G038600 chr3A_20722647 chr3A 20722647 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 20725183 20727305 2123 5 0.23551577955723 RFvsST 177437 107975162 107797726 no 120.924626628661 TraesCS3A01G038600 chr3A_20723558 chr3A 20723558 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 20725183 20727305 2123 5 0.23551577955723 RFvsST 177437 107975162 107797726 no 120.924626628661 TraesCS3A01G038600 chr3A_20723565 chr3A 20723565 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 20725183 20727305 2123 5 0.23551577955723 RFvsST 177437 107975162 107797726 no 120.924626628661 TraesCS3A01G038600 chr3A_20723777 chr3A 20723777 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 20725183 20727305 2123 5 0.23551577955723 RFvsST 177437 107975162 107797726 no 120.924626628661 TraesCS3A01G038600 chr3A_20727158 chr3A 20727158 C C G G 4 missense_variant MODERATE transcript non_Triplet 20725183 20727305 2123 5 0.23551577955723 RFvsST 177437 107975162 107797726 no 120.924626628661 TraesCS3A01G041300 chr3A_22205851 chr3A 22205851 A A G G 4 synonymous_variant LOW transcript non_Triplet 22200091 22206072 5982 1 0.0167168171180207 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G042900 chr3A_23275790 chr3A 23275790 C C T T 4 synonymous_variant LOW transcript unique_Triplet 23274369 23275913 1545 1 0.0647249190938511 RFvsST 177437 107975162 107797726 no 146.614562874361 TraesCS3A01G043500 chr3A_23651282 chr3A 23651282 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 23646053 23649280 3228 2 0.0619578686493185 RFvsST 177437 107975162 107797726 no 9.40467076498582 TraesCS3A01G043500 chr3A_23651190 chr3A 23651190 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 23646053 23649280 3228 2 0.0619578686493185 RFvsST 177437 107975162 107797726 no 9.40467076498582 TraesCS3A01G043600 chr3A_23652956 chr3A 23652956 A A G G 4 synonymous_variant LOW transcript unique_Triplet 23651315 23656843 5529 3 0.0542593597395551 RFvsST 177437 107975162 107797726 no 184.978047276552 TraesCS3A01G043600 chr3A_23651474 chr3A 23651474 T T C C 4 synonymous_variant LOW transcript unique_Triplet 23651315 23656843 5529 3 0.0542593597395551 RFvsST 177437 107975162 107797726 no 184.978047276552 TraesCS3A01G043600 chr3A_23654584 chr3A 23654584 A A T T 4 missense_variant MODERATE transcript unique_Triplet 23651315 23656843 5529 3 0.0542593597395551 RFvsST 177437 107975162 107797726 no 184.978047276552 TraesCS3A01G043700 chr3A_23829160 chr3A 23829160 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 23823011 23829185 6175 4 0.0647773279352227 RFvsST 177437 107975162 107797726 no 166.125645332584 TraesCS3A01G043700 chr3A_23829119 chr3A 23829119 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 23823011 23829185 6175 4 0.0647773279352227 RFvsST 177437 107975162 107797726 no 166.125645332584 TraesCS3A01G043700 chr3A_23828837 chr3A 23828837 G G C C 4 synonymous_variant LOW transcript unique_Triplet 23823011 23829185 6175 4 0.0647773279352227 RFvsST 177437 107975162 107797726 no 166.125645332584 TraesCS3A01G043700 chr3A_23828941 chr3A 23828941 C C T T 4 missense_variant MODERATE transcript unique_Triplet 23823011 23829185 6175 4 0.0647773279352227 RFvsST 177437 107975162 107797726 no 166.125645332584 TraesCS3A01G043800 chr3A_23829202 chr3A 23829202 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 23830179 23831482 1304 1 0.0766871165644172 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G043900 chr3A_23832758 chr3A 23832758 G G C C 4 synonymous_variant LOW transcript non_Triplet 23831688 23835290 3603 2 0.0555092978073827 RFvsST 177437 107975162 107797726 no 51.564402407395 TraesCS3A01G043900 chr3A_23832782 chr3A 23832782 C C G G 4 synonymous_variant LOW transcript non_Triplet 23831688 23835290 3603 2 0.0555092978073827 RFvsST 177437 107975162 107797726 no 51.564402407395 TraesCS3A01G044000 chr3A_23843048 chr3A 23843048 A A G G 4 synonymous_variant LOW transcript unique_Triplet 23839603 23846543 6941 4 0.0576285837775537 RFvsST 177437 107975162 107797726 no 132.944881538089 TraesCS3A01G044000 chr3A_23842910 chr3A 23842910 G G C C 4 synonymous_variant LOW transcript unique_Triplet 23839603 23846543 6941 4 0.0576285837775537 RFvsST 177437 107975162 107797726 no 132.944881538089 TraesCS3A01G044000 chr3A_23842934 chr3A 23842934 C C G G 4 synonymous_variant LOW transcript unique_Triplet 23839603 23846543 6941 4 0.0576285837775537 RFvsST 177437 107975162 107797726 no 132.944881538089 TraesCS3A01G044000 chr3A_23843051 chr3A 23843051 A A G G 4 synonymous_variant LOW transcript unique_Triplet 23839603 23846543 6941 4 0.0576285837775537 RFvsST 177437 107975162 107797726 no 132.944881538089 TraesCS3A01G046400 chr3A_24752372 chr3A 24752372 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24753048 chr3A 24753048 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752884 chr3A 24752884 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752927 chr3A 24752927 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24751357 chr3A 24751357 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752936 chr3A 24752936 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752397 chr3A 24752397 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24751575 chr3A 24751575 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24753015 chr3A 24753015 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24753115 chr3A 24753115 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752027 chr3A 24752027 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G046400 chr3A_24752003 chr3A 24752003 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 24753476 24754272 797 12 1.50564617314931 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G047500 chr3A_25115886 chr3A 25115886 C T C T 3 missense_variant MODERATE transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25115426 chr3A 25115426 T C T C 3 synonymous_variant LOW transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25115708 chr3A 25115708 C G C G 3 synonymous_variant LOW transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25115704 chr3A 25115704 G A G A 3 synonymous_variant LOW transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25116138 chr3A 25116138 C T C T 3 missense_variant MODERATE transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25116251 chr3A 25116251 C T C T 3 synonymous_variant LOW transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047500 chr3A_25116428 chr3A 25116428 C A C A 3 synonymous_variant LOW transcript unique_Triplet 25115110 25118394 3285 7 0.213089802130898 RFvsST 177437 107975162 107797726 no 176.806821873696 TraesCS3A01G047700 chr3A_25356185 chr3A 25356185 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 25356301 25360841 4541 3 0.0660647434485796 RFvsST 177437 107975162 107797726 no 969.015624057652 TraesCS3A01G047700 chr3A_25360812 chr3A 25360812 A G A G 3 synonymous_variant LOW transcript unique_Triplet 25356301 25360841 4541 3 0.0660647434485796 RFvsST 177437 107975162 107797726 no 969.015624057652 TraesCS3A01G047700 chr3A_25356528 chr3A 25356528 C G C G 3 missense_variant MODERATE transcript unique_Triplet 25356301 25360841 4541 3 0.0660647434485796 RFvsST 177437 107975162 107797726 no 969.015624057652 TraesCS3A01G047800 chr3A_25368597 chr3A 25368597 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 25368770 25373783 5014 1 0.0199441563621859 RFvsST 177437 107975162 107797726 no 358.385875792954 TraesCS3A01G048500 chr3A_25908823 chr3A 25908823 C T C T 3 synonymous_variant LOW transcript non_Triplet 25906151 25908895 2745 1 0.0364298724954463 RFvsST 177437 107975162 107797726 no 269.880108860849 TraesCS3A01G048700 chr3A_25932676 chr3A 25932676 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25933434 chr3A 25933434 T C T C 3 missense_variant MODERATE transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25934025 chr3A 25934025 C T C T 3 missense_variant MODERATE transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25933776 chr3A 25933776 T C T C 3 missense_variant MODERATE transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25932735 chr3A 25932735 A G A G 3 stop_lost&splice_region_variant HIGH transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25933665 chr3A 25933665 A C A C 3 missense_variant MODERATE transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048700 chr3A_25933276 chr3A 25933276 T C T C 3 synonymous_variant LOW transcript non_Triplet 25932733 25936226 3494 7 0.20034344590727 RFvsST 177437 107975162 107797726 no 112.921608162778 TraesCS3A01G048900 chr3A_25959116 chr3A 25959116 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 25953297 25954348 1052 2 0.190114068441065 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G048900 chr3A_25959090 chr3A 25959090 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 25953297 25954348 1052 2 0.190114068441065 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G049600 chr3A_26233533 chr3A 26233533 C G C G 3 missense_variant MODERATE transcript non_Triplet 26229735 26234770 5036 1 0.0198570293884035 RFvsST 177437 107975162 107797726 no 196.70665536595 TraesCS3A01G054200 chr3A_31736033 chr3A 31736033 A A G G 4 missense_variant MODERATE transcript non_Triplet 31735459 31741468 6010 3 0.0499168053244592 RFvsST 177437 107975162 107797726 no 82.4781178247299 TraesCS3A01G054200 chr3A_31741070 chr3A 31741070 T T C C 4 synonymous_variant LOW transcript non_Triplet 31735459 31741468 6010 3 0.0499168053244592 RFvsST 177437 107975162 107797726 no 82.4781178247299 TraesCS3A01G054200 chr3A_31739601 chr3A 31739601 A A G G 4 missense_variant MODERATE transcript non_Triplet 31735459 31741468 6010 3 0.0499168053244592 RFvsST 177437 107975162 107797726 no 82.4781178247299 TraesCS3A01G061100 chr3A_36490708 chr3A 36490708 C C T T 4 synonymous_variant LOW transcript unique_Triplet 36488224 36491213 2990 3 0.100334448160535 RFvsST 177437 107975162 107797726 no 65.1458896031343 TraesCS3A01G061100 chr3A_36490765 chr3A 36490765 T T C C 4 synonymous_variant LOW transcript unique_Triplet 36488224 36491213 2990 3 0.100334448160535 RFvsST 177437 107975162 107797726 no 65.1458896031343 TraesCS3A01G061100 chr3A_36489078 chr3A 36489078 T T C C 4 synonymous_variant LOW transcript unique_Triplet 36488224 36491213 2990 3 0.100334448160535 RFvsST 177437 107975162 107797726 no 65.1458896031343 TraesCS3A01G068600 chr3A_41067458 chr3A 41067458 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 41064235 41065650 1416 1 0.0706214689265537 RFvsST 177437 107975162 107797726 no 192.6287390086 TraesCS3A01G073400 chr3A_45593873 chr3A 45593873 T T C C 4 synonymous_variant LOW transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45593945 chr3A 45593945 T T C C 4 synonymous_variant LOW transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45603568 chr3A 45603568 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45593590 chr3A 45593590 T T C C 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45595543 chr3A 45595543 G G T T 4 synonymous_variant LOW transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45598441 chr3A 45598441 A A G G 4 synonymous_variant LOW transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45592788 chr3A 45592788 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45599885 chr3A 45599885 G G A A 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45599858 chr3A 45599858 G G A A 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45598968 chr3A 45598968 C C A A 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45597645 chr3A 45597645 C C T T 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G073400 chr3A_45598422 chr3A 45598422 T T C C 4 missense_variant MODERATE transcript unique_Triplet 45592959 45602896 9938 12 0.120748641577782 RFvsST 177437 107975162 107797726 no 1534.08505548945 TraesCS3A01G074000 chr3A_46165651 chr3A 46165651 G G A A 4 missense_variant MODERATE transcript unique_Triplet 46165228 46175029 9802 2 0.02040399918384 RFvsST 177437 107975162 107797726 no 18.4663591106993 TraesCS3A01G074000 chr3A_46175296 chr3A 46175296 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 46165228 46175029 9802 2 0.02040399918384 RFvsST 177437 107975162 107797726 no 18.4663591106993 TraesCS3A01G079600 chr3A_51473668 chr3A 51473668 C A C A 3 synonymous_variant LOW transcript unique_Triplet 51470065 51473712 3648 2 0.0548245614035088 RFvsST 177437 107975162 107797726 no 160.137617285802 TraesCS3A01G079600 chr3A_51473669 chr3A 51473669 C A C A 3 missense_variant MODERATE transcript unique_Triplet 51470065 51473712 3648 2 0.0548245614035088 RFvsST 177437 107975162 107797726 no 160.137617285802 TraesCS3A01G090000 chr3A_57285911 chr3A 57285911 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 57278906 57285691 6786 1 0.0147362216327734 RFvsST 177437 107975162 107797726 no 13.0684636982786 TraesCS3A01G091100 chr3A_57805089 chr3A 57805089 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 57804427 57809278 4852 3 0.0618301731244847 RFvsST 177437 107975162 107797726 no 148.575341024024 TraesCS3A01G091100 chr3A_57806890 chr3A 57806890 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 57804427 57809278 4852 3 0.0618301731244847 RFvsST 177437 107975162 107797726 no 148.575341024024 TraesCS3A01G091100 chr3A_57807073 chr3A 57807073 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 57804427 57809278 4852 3 0.0618301731244847 RFvsST 177437 107975162 107797726 no 148.575341024024 TraesCS3A01G091200 chr3A_57809390 chr3A 57809390 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 57812878 57813177 300 3 1 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G091200 chr3A_57809448 chr3A 57809448 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 57812878 57813177 300 3 1 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G091200 chr3A_57809455 chr3A 57809455 G G C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 57812878 57813177 300 3 1 RFvsST 177437 107975162 107797726 no No_match TraesCS3A01G091400 chr3A_57858347 chr3A 57858347 G G A A 4 missense_variant MODERATE transcript unique_Triplet 57855927 57858791 2865 3 0.104712041884817 RFvsST 177437 107975162 107797726 no 290.136781253685 TraesCS3A01G091400 chr3A_57856017 chr3A 57856017 A A G G 4 synonymous_variant LOW transcript unique_Triplet 57855927 57858791 2865 3 0.104712041884817 RFvsST 177437 107975162 107797726 no 290.136781253685 TraesCS3A01G091400 chr3A_57857768 chr3A 57857768 T T C C 4 synonymous_variant LOW transcript unique_Triplet 57855927 57858791 2865 3 0.104712041884817 RFvsST 177437 107975162 107797726 no 290.136781253685 TraesCS3A01G091800 chr3A_57890738 chr3A 57890738 C C A A 4 synonymous_variant LOW transcript non_Triplet 57885702 57892521 6820 3 0.0439882697947214 RFvsST 177437 107975162 107797726 no 168.409978165893 TraesCS3A01G091800 chr3A_57890977 chr3A 57890977 A A C C 4 missense_variant MODERATE transcript non_Triplet 57885702 57892521 6820 3 0.0439882697947214 RFvsST 177437 107975162 107797726 no 168.409978165893 TraesCS3A01G091800 chr3A_57891313 chr3A 57891313 A A G G 4 missense_variant MODERATE transcript non_Triplet 57885702 57892521 6820 3 0.0439882697947214 RFvsST 177437 107975162 107797726 no 168.409978165893 TraesCS3A01G092800 chr3A_58838967 chr3A 58838967 G G T T 4 missense_variant MODERATE transcript unique_Triplet 58836258 58839097 2840 2 0.0704225352112676 RFvsST 177437 107975162 107797726 no 151.416232458066 TraesCS3A01G092800 chr3A_58838533 chr3A 58838533 T T C C 4 missense_variant MODERATE transcript unique_Triplet 58836258 58839097 2840 2 0.0704225352112676 RFvsST 177437 107975162 107797726 no 151.416232458066 TraesCS3A01G092900 chr3A_58931009 chr3A 58931009 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 58927249 58930973 3725 1 0.0268456375838926 RFvsST 177437 107975162 107797726 no 344.256621311646 TraesCS3A01G093000 chr3A_59424552 chr3A 59424552 G G T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript nonUnique_Triplet 59424287 59435902 11616 1 0.00860881542699725 RFvsST 177437 107975162 107797726 no 162.18994786394 TraesCS3A01G093100 chr3A_59521656 chr3A 59521656 G G A A 4 missense_variant MODERATE transcript unique_Triplet 59508325 59521961 13637 4 0.0293319645083229 RFvsST 177437 107975162 107797726 no 242.043737131905 TraesCS3A01G093100 chr3A_59519533 chr3A 59519533 T T C C 4 missense_variant MODERATE transcript unique_Triplet 59508325 59521961 13637 4 0.0293319645083229 RFvsST 177437 107975162 107797726 no 242.043737131905 TraesCS3A01G093100 chr3A_59521797 chr3A 59521797 A A C C 4 missense_variant MODERATE transcript unique_Triplet 59508325 59521961 13637 4 0.0293319645083229 RFvsST 177437 107975162 107797726 no 242.043737131905 TraesCS3A01G093100 chr3A_59518887 chr3A 59518887 T T C C 4 synonymous_variant LOW transcript unique_Triplet 59508325 59521961 13637 4 0.0293319645083229 RFvsST 177437 107975162 107797726 no 242.043737131905 TraesCS3A01G093300 chr3A_59808712 chr3A 59808712 A A G G 4 missense_variant MODERATE transcript non_Triplet 59806641 59809019 2379 1 0.0420344682639765 RFvsST 177437 107975162 107797726 no 107.79127417072 TraesCS3A01G149300 chr3A_134245071 chr3A 134245071 G A G A 3 missense_variant MODERATE transcript unique_Triplet 134240913 134245082 4170 1 0.0239808153477218 RFvsST 75955241 750500451 674545211 no 13.6237349338708 TraesCS3A01G149400 chr3A_134246238 chr3A 134246238 C C G G 4 missense_variant MODERATE transcript unique_Triplet 134245877 134247561 1685 1 0.0593471810089021 RFvsST 75955241 750500451 674545211 no 11.9542180599308 TraesCS3A01G149900 chr3A_136428347 chr3A 136428347 A C A C 3 synonymous_variant LOW transcript unique_Triplet 136428105 136429906 1802 4 0.221975582685905 RFvsST 75955241 750500451 674545211 no 117.874420642751 TraesCS3A01G149900 chr3A_136429973 chr3A 136429973 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 136428105 136429906 1802 4 0.221975582685905 RFvsST 75955241 750500451 674545211 no 117.874420642751 TraesCS3A01G149900 chr3A_136428224 chr3A 136428224 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 136428105 136429906 1802 4 0.221975582685905 RFvsST 75955241 750500451 674545211 no 117.874420642751 TraesCS3A01G149900 chr3A_136428481 chr3A 136428481 T G T G 3 synonymous_variant LOW transcript unique_Triplet 136428105 136429906 1802 4 0.221975582685905 RFvsST 75955241 750500451 674545211 no 117.874420642751 TraesCS3A01G150100 chr3A_136531368 chr3A 136531368 A G A G 3 missense_variant MODERATE transcript unique_Triplet 136528360 136532274 3915 1 0.0255427841634738 RFvsST 75955241 750500451 674545211 no 23.6695606107643 TraesCS3A01G150200 chr3A_136567803 chr3A 136567803 G A G A 3 stop_gained HIGH transcript unique_Triplet 136567750 136575891 8142 5 0.0614099729796119 RFvsST 75955241 750500451 674545211 no 24.1189070419252 TraesCS3A01G150200 chr3A_136567774 chr3A 136567774 T G T G 3 synonymous_variant LOW transcript unique_Triplet 136567750 136575891 8142 5 0.0614099729796119 RFvsST 75955241 750500451 674545211 no 24.1189070419252 TraesCS3A01G150200 chr3A_136567802 chr3A 136567802 T C T C 3 missense_variant MODERATE transcript unique_Triplet 136567750 136575891 8142 5 0.0614099729796119 RFvsST 75955241 750500451 674545211 no 24.1189070419252 TraesCS3A01G150200 chr3A_136567773 chr3A 136567773 G A G A 3 missense_variant MODERATE transcript unique_Triplet 136567750 136575891 8142 5 0.0614099729796119 RFvsST 75955241 750500451 674545211 no 24.1189070419252 TraesCS3A01G150200 chr3A_136568291 chr3A 136568291 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 136567750 136575891 8142 5 0.0614099729796119 RFvsST 75955241 750500451 674545211 no 24.1189070419252 TraesCS3A01G150300 chr3A_137580183 chr3A 137580183 G A G A 3 missense_variant MODERATE transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150300 chr3A_137582956 chr3A 137582956 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150300 chr3A_137582141 chr3A 137582141 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150300 chr3A_137582286 chr3A 137582286 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150300 chr3A_137581664 chr3A 137581664 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150300 chr3A_137585793 chr3A 137585793 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 137574206 137582137 7932 6 0.075642965204236 RFvsST 75955241 750500451 674545211 no 147.943794416926 TraesCS3A01G150400 chr3A_137588470 chr3A 137588470 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 137591607 137599545 7939 1 0.0125960448419196 RFvsST 75955241 750500451 674545211 no 5.15932327845425 TraesCS3A01G150800 chr3A_137787082 chr3A 137787082 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 137786941 137787624 684 1 0.146198830409357 RFvsST 75955241 750500451 674545211 no 35.4711013264046 TraesCS3A01G151100 chr3A_140008097 chr3A 140008097 T G T G 3 missense_variant MODERATE transcript unique_Triplet 140003790 140013611 9822 1 0.0101812258195887 RFvsST 75955241 750500451 674545211 no 53.4646061170841 TraesCS3A01G151200 chr3A_140042635 chr3A 140042635 A C A C 3 synonymous_variant LOW transcript unique_Triplet 140041001 140043329 2329 3 0.12881064834693 RFvsST 75955241 750500451 674545211 no 33.7977258304613 TraesCS3A01G151200 chr3A_140043285 chr3A 140043285 T C T C 3 synonymous_variant LOW transcript unique_Triplet 140041001 140043329 2329 3 0.12881064834693 RFvsST 75955241 750500451 674545211 no 33.7977258304613 TraesCS3A01G151200 chr3A_140043543 chr3A 140043543 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 140041001 140043329 2329 3 0.12881064834693 RFvsST 75955241 750500451 674545211 no 33.7977258304613 TraesCS3A01G151600 chr3A_141010676 chr3A 141010676 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 141008490 141011005 2516 1 0.0397456279809221 RFvsST 75955241 750500451 674545211 no 39.0131265546347 TraesCS3A01G152000 chr3A_142580693 chr3A 142580693 C T C T 3 synonymous_variant LOW transcript unique_Triplet 142579178 142581081 1904 1 0.0525210084033613 RFvsST 75955241 750500451 674545211 no 114.342178399682 TraesCS3A01G153900 chr3A_144546647 chr3A 144546647 A A G G 4 synonymous_variant LOW transcript unique_Triplet 144543673 144546844 3172 2 0.0630517023959647 RFvsST 75955241 750500451 674545211 no 238.315994477451 TraesCS3A01G153900 chr3A_144545424 chr3A 144545424 G G A A 4 synonymous_variant LOW transcript unique_Triplet 144543673 144546844 3172 2 0.0630517023959647 RFvsST 75955241 750500451 674545211 no 238.315994477451 TraesCS3A01G154000 chr3A_145260730 chr3A 145260730 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 145250507 145260927 10421 2 0.0191920161212935 RFvsST 75955241 750500451 674545211 no 609.977890517394 TraesCS3A01G154000 chr3A_145260581 chr3A 145260581 T T C C 4 missense_variant MODERATE transcript unique_Triplet 145250507 145260927 10421 2 0.0191920161212935 RFvsST 75955241 750500451 674545211 no 609.977890517394 TraesCS3A01G154500 chr3A_146392465 chr3A 146392465 T T C C 4 missense_variant MODERATE transcript unique_Triplet 146386578 146393093 6516 1 0.0153468385512584 RFvsST 75955241 750500451 674545211 no 148.201737840242 TraesCS3A01G155100 chr3A_147284064 chr3A 147284064 G G A A 4 stop_gained HIGH transcript unique_Triplet 147284059 147293990 9932 5 0.0503423278292388 RFvsST 75955241 750500451 674545211 no 138.055245583382 TraesCS3A01G155100 chr3A_147283994 chr3A 147283994 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 147284059 147293990 9932 5 0.0503423278292388 RFvsST 75955241 750500451 674545211 no 138.055245583382 TraesCS3A01G155100 chr3A_147294130 chr3A 147294130 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 147284059 147293990 9932 5 0.0503423278292388 RFvsST 75955241 750500451 674545211 no 138.055245583382 TraesCS3A01G155100 chr3A_147293160 chr3A 147293160 T T C C 4 synonymous_variant LOW transcript unique_Triplet 147284059 147293990 9932 5 0.0503423278292388 RFvsST 75955241 750500451 674545211 no 138.055245583382 TraesCS3A01G155100 chr3A_147284049 chr3A 147284049 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 147284059 147293990 9932 5 0.0503423278292388 RFvsST 75955241 750500451 674545211 no 138.055245583382 TraesCS3A01G155200 chr3A_147789467 chr3A 147789467 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 147789490 147793018 3529 1 0.028336639274582 RFvsST 75955241 750500451 674545211 no 219.57994981609 TraesCS3A01G155400 chr3A_148603146 chr3A 148603146 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 148603253 148611225 7973 4 0.0501693214599273 RFvsST 75955241 750500451 674545211 no 17.176000495578 TraesCS3A01G155400 chr3A_148609797 chr3A 148609797 G G A A 4 missense_variant MODERATE transcript unique_Triplet 148603253 148611225 7973 4 0.0501693214599273 RFvsST 75955241 750500451 674545211 no 17.176000495578 TraesCS3A01G155400 chr3A_148604436 chr3A 148604436 A A G G 4 missense_variant MODERATE transcript unique_Triplet 148603253 148611225 7973 4 0.0501693214599273 RFvsST 75955241 750500451 674545211 no 17.176000495578 TraesCS3A01G155400 chr3A_148610589 chr3A 148610589 T T C C 4 missense_variant MODERATE transcript unique_Triplet 148603253 148611225 7973 4 0.0501693214599273 RFvsST 75955241 750500451 674545211 no 17.176000495578 TraesCS3A01G156100 chr3A_150716321 chr3A 150716321 A A G G 4 missense_variant MODERATE transcript unique_Triplet 150711395 150717858 6464 1 0.015470297029703 RFvsST 75955241 750500451 674545211 no 119.291488885519 TraesCS3A01G156200 chr3A_150722883 chr3A 150722883 C C A A 4 missense_variant MODERATE transcript unique_Triplet 150718644 150725029 6386 4 0.0626370184779205 RFvsST 75955241 750500451 674545211 no 284.18369866795 TraesCS3A01G156200 chr3A_150722817 chr3A 150722817 G G C C 4 missense_variant MODERATE transcript unique_Triplet 150718644 150725029 6386 4 0.0626370184779205 RFvsST 75955241 750500451 674545211 no 284.18369866795 TraesCS3A01G156200 chr3A_150724981 chr3A 150724981 G G A A 4 synonymous_variant LOW transcript unique_Triplet 150718644 150725029 6386 4 0.0626370184779205 RFvsST 75955241 750500451 674545211 no 284.18369866795 TraesCS3A01G156200 chr3A_150718565 chr3A 150718565 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 150718644 150725029 6386 4 0.0626370184779205 RFvsST 75955241 750500451 674545211 no 284.18369866795 TraesCS3A01G156300 chr3A_151318591 chr3A 151318591 C C T T 4 synonymous_variant LOW transcript non_Triplet 151314477 151318849 4373 2 0.0457351932311914 RFvsST 75955241 750500451 674545211 no 132.224647144164 TraesCS3A01G156300 chr3A_151318711 chr3A 151318711 T T C C 4 synonymous_variant LOW transcript non_Triplet 151314477 151318849 4373 2 0.0457351932311914 RFvsST 75955241 750500451 674545211 no 132.224647144164 TraesCS3A01G156800 chr3A_153077039 chr3A 153077039 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 153076526 153078264 1739 1 0.0575043128234618 RFvsST 75955241 750500451 674545211 no 2327.29171190695 TraesCS3A01G157100 chr3A_154033086 chr3A 154033086 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 154030687 154032615 1929 1 0.0518403317781234 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G157200 chr3A_154034372 chr3A 154034372 T T C C 4 synonymous_variant LOW transcript unique_Triplet 154033225 154037792 4568 1 0.0218914185639229 RFvsST 75955241 750500451 674545211 no 70.9169927439021 TraesCS3A01G157700 chr3A_155059202 chr3A 155059202 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 155057492 155058715 1224 1 0.0816993464052288 RFvsST 75955241 750500451 674545211 no 17.7824544664531 TraesCS3A01G157800 chr3A_155061416 chr3A 155061416 C C T T 4 missense_variant MODERATE transcript unique_Triplet 155059281 155062765 3485 3 0.0860832137733142 RFvsST 75955241 750500451 674545211 no 25.427683967296 TraesCS3A01G157800 chr3A_155061542 chr3A 155061542 A A G G 4 synonymous_variant LOW transcript unique_Triplet 155059281 155062765 3485 3 0.0860832137733142 RFvsST 75955241 750500451 674545211 no 25.427683967296 TraesCS3A01G157800 chr3A_155062771 chr3A 155062771 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 155059281 155062765 3485 3 0.0860832137733142 RFvsST 75955241 750500451 674545211 no 25.427683967296 TraesCS3A01G158100 chr3A_155825221 chr3A 155825221 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 155825269 155826347 1079 2 0.185356811862836 RFvsST 75955241 750500451 674545211 no 962.853935508658 TraesCS3A01G158100 chr3A_155826573 chr3A 155826573 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 155825269 155826347 1079 2 0.185356811862836 RFvsST 75955241 750500451 674545211 no 962.853935508658 TraesCS3A01G158200 chr3A_155830862 chr3A 155830862 T T C C 4 missense_variant MODERATE transcript unique_Triplet 155827547 155833121 5575 2 0.0358744394618834 RFvsST 75955241 750500451 674545211 no 58.3938893005033 TraesCS3A01G158200 chr3A_155829351 chr3A 155829351 A A G G 4 missense_variant MODERATE transcript unique_Triplet 155827547 155833121 5575 2 0.0358744394618834 RFvsST 75955241 750500451 674545211 no 58.3938893005033 TraesCS3A01G158300 chr3A_156130734 chr3A 156130734 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 156124636 156126821 2186 5 0.228728270814273 RFvsST 75955241 750500451 674545211 no 30.6016171908883 TraesCS3A01G158300 chr3A_156128812 chr3A 156128812 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 156124636 156126821 2186 5 0.228728270814273 RFvsST 75955241 750500451 674545211 no 30.6016171908883 TraesCS3A01G158300 chr3A_156128268 chr3A 156128268 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 156124636 156126821 2186 5 0.228728270814273 RFvsST 75955241 750500451 674545211 no 30.6016171908883 TraesCS3A01G158300 chr3A_156128908 chr3A 156128908 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 156124636 156126821 2186 5 0.228728270814273 RFvsST 75955241 750500451 674545211 no 30.6016171908883 TraesCS3A01G158300 chr3A_156128681 chr3A 156128681 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 156124636 156126821 2186 5 0.228728270814273 RFvsST 75955241 750500451 674545211 no 30.6016171908883 TraesCS3A01G158600 chr3A_156268363 chr3A 156268363 A A G G 4 synonymous_variant LOW transcript unique_Triplet 156267999 156270204 2206 1 0.0453309156844968 RFvsST 75955241 750500451 674545211 no 254.331864962591 TraesCS3A01G158700 chr3A_157023752 chr3A 157023752 T T A A 4 missense_variant MODERATE transcript unique_Triplet 157022407 157026124 3718 2 0.0537923614846692 RFvsST 75955241 750500451 674545211 no 116.331318954458 TraesCS3A01G158700 chr3A_157023514 chr3A 157023514 C C A A 4 missense_variant MODERATE transcript unique_Triplet 157022407 157026124 3718 2 0.0537923614846692 RFvsST 75955241 750500451 674545211 no 116.331318954458 TraesCS3A01G158800 chr3A_157031886 chr3A 157031886 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 157031960 157033177 1218 1 0.0821018062397373 RFvsST 75955241 750500451 674545211 no 2691.61192253476 TraesCS3A01G159400 chr3A_159345574 chr3A 159345574 G G A A 4 missense_variant MODERATE transcript non_Triplet 159345471 159345731 261 1 0.383141762452107 RFvsST 75955241 750500451 674545211 no 19.6145916658276 TraesCS3A01G159500 chr3A_159349349 chr3A 159349349 G G A A 4 missense_variant MODERATE transcript unique_Triplet 159347339 159349911 2573 1 0.0388651379712398 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G159700 chr3A_159427723 chr3A 159427723 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 159431235 159432651 1417 2 0.141143260409315 RFvsST 75955241 750500451 674545211 no 45.0870399277754 TraesCS3A01G159700 chr3A_159427136 chr3A 159427136 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 159431235 159432651 1417 2 0.141143260409315 RFvsST 75955241 750500451 674545211 no 45.0870399277754 TraesCS3A01G159800 chr3A_159832020 chr3A 159832020 A A G G 4 missense_variant MODERATE transcript unique_Triplet 159832011 159832976 966 1 0.10351966873706 RFvsST 75955241 750500451 674545211 no 160.006155996742 TraesCS3A01G159900 chr3A_159835480 chr3A 159835480 G G A A 4 missense_variant MODERATE transcript unique_Triplet 159835352 159845189 9838 2 0.020329335230738 RFvsST 75955241 750500451 674545211 no 182.154467282747 TraesCS3A01G159900 chr3A_159845092 chr3A 159845092 G G A A 4 missense_variant MODERATE transcript unique_Triplet 159835352 159845189 9838 2 0.020329335230738 RFvsST 75955241 750500451 674545211 no 182.154467282747 TraesCS3A01G160300 chr3A_160080382 chr3A 160080382 C C G G 4 missense_variant MODERATE transcript unique_Triplet 160076442 160081868 5427 2 0.0368527731711811 RFvsST 75955241 750500451 674545211 no 36.4139182616065 TraesCS3A01G160300 chr3A_160076691 chr3A 160076691 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 160076442 160081868 5427 2 0.0368527731711811 RFvsST 75955241 750500451 674545211 no 36.4139182616065 TraesCS3A01G160800 chr3A_161451393 chr3A 161451393 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 161449857 161451045 1189 1 0.0841042893187553 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G160900 chr3A_161460336 chr3A 161460336 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 161451451 161459545 8095 2 0.0247066090179123 RFvsST 75955241 750500451 674545211 no 11.2391551927949 TraesCS3A01G160900 chr3A_161452120 chr3A 161452120 C C T T 4 missense_variant MODERATE transcript unique_Triplet 161451451 161459545 8095 2 0.0247066090179123 RFvsST 75955241 750500451 674545211 no 11.2391551927949 TraesCS3A01G161000 chr3A_161461475 chr3A 161461475 C C G G 4 missense_variant MODERATE transcript unique_Triplet 161460419 161465964 5546 1 0.0180310133429499 RFvsST 75955241 750500451 674545211 no 1080.05946623067 TraesCS3A01G161200 chr3A_162761964 chr3A 162761964 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 162756053 162759732 3680 3 0.0815217391304348 RFvsST 75955241 750500451 674545211 no 229.542755929653 TraesCS3A01G161200 chr3A_162761880 chr3A 162761880 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 162756053 162759732 3680 3 0.0815217391304348 RFvsST 75955241 750500451 674545211 no 229.542755929653 TraesCS3A01G161200 chr3A_162759443 chr3A 162759443 T T G G 4 missense_variant MODERATE transcript unique_Triplet 162756053 162759732 3680 3 0.0815217391304348 RFvsST 75955241 750500451 674545211 no 229.542755929653 TraesCS3A01G161400 chr3A_163621554 chr3A 163621554 G G A A 4 missense_variant MODERATE transcript non_Triplet 163621431 163626078 4648 1 0.0215146299483649 RFvsST 75955241 750500451 674545211 no 270.914317417775 TraesCS3A01G161800 chr3A_163936116 chr3A 163936116 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 163929708 163933091 3384 1 0.0295508274231678 RFvsST 75955241 750500451 674545211 no 65.6413181018034 TraesCS3A01G161900 chr3A_164370331 chr3A 164370331 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 164369931 164370326 396 1 0.252525252525253 RFvsST 75955241 750500451 674545211 no 42.5378659106184 TraesCS3A01G162000 chr3A_164406576 chr3A 164406576 T T C C 4 missense_variant MODERATE transcript non_Triplet 164403801 164409601 5801 1 0.0172384071711774 RFvsST 75955241 750500451 674545211 no 21.6599682417311 TraesCS3A01G163100 chr3A_165333181 chr3A 165333181 C C T T 4 missense_variant MODERATE transcript unique_Triplet 165328622 165333284 4663 4 0.0857816856101222 RFvsST 75955241 750500451 674545211 no 62.4044731647758 TraesCS3A01G163100 chr3A_165330785 chr3A 165330785 T T C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 165328622 165333284 4663 4 0.0857816856101222 RFvsST 75955241 750500451 674545211 no 62.4044731647758 TraesCS3A01G163100 chr3A_165328850 chr3A 165328850 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 165328622 165333284 4663 4 0.0857816856101222 RFvsST 75955241 750500451 674545211 no 62.4044731647758 TraesCS3A01G163100 chr3A_165331929 chr3A 165331929 C C T T 4 missense_variant MODERATE transcript unique_Triplet 165328622 165333284 4663 4 0.0857816856101222 RFvsST 75955241 750500451 674545211 no 62.4044731647758 TraesCS3A01G163300 chr3A_165416052 chr3A 165416052 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 165416803 165420087 3285 2 0.060882800608828 RFvsST 75955241 750500451 674545211 no 140.90367171733 TraesCS3A01G163300 chr3A_165416816 chr3A 165416816 T T G G 4 missense_variant MODERATE transcript unique_Triplet 165416803 165420087 3285 2 0.060882800608828 RFvsST 75955241 750500451 674545211 no 140.90367171733 TraesCS3A01G163600 chr3A_166925464 chr3A 166925464 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 166923329 166924514 1186 1 0.0843170320404722 RFvsST 75955241 750500451 674545211 no 82.9763012806394 TraesCS3A01G164000 chr3A_168837325 chr3A 168837325 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 168832387 168836237 3851 1 0.0259672812256557 RFvsST 75955241 750500451 674545211 no 13.3729510037796 TraesCS3A01G164600 chr3A_169850373 chr3A 169850373 A A C C 4 missense_variant MODERATE transcript unique_Triplet 169845335 169850836 5502 3 0.054525627044711 RFvsST 75955241 750500451 674545211 no 190.213509793534 TraesCS3A01G164600 chr3A_169846449 chr3A 169846449 A A G G 4 missense_variant MODERATE transcript unique_Triplet 169845335 169850836 5502 3 0.054525627044711 RFvsST 75955241 750500451 674545211 no 190.213509793534 TraesCS3A01G164600 chr3A_169846049 chr3A 169846049 T T C C 4 synonymous_variant LOW transcript unique_Triplet 169845335 169850836 5502 3 0.054525627044711 RFvsST 75955241 750500451 674545211 no 190.213509793534 TraesCS3A01G164800 chr3A_170226696 chr3A 170226696 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 170226838 170227257 420 2 0.476190476190476 RFvsST 75955241 750500451 674545211 no 15.5376317342388 TraesCS3A01G164800 chr3A_170226678 chr3A 170226678 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 170226838 170227257 420 2 0.476190476190476 RFvsST 75955241 750500451 674545211 no 15.5376317342388 TraesCS3A01G165000 chr3A_170251969 chr3A 170251969 A A G G 4 synonymous_variant LOW transcript unique_Triplet 170245132 170252190 7059 4 0.0566652500354158 RFvsST 75955241 750500451 674545211 no 26.4084506457683 TraesCS3A01G165000 chr3A_170245114 chr3A 170245114 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 170245132 170252190 7059 4 0.0566652500354158 RFvsST 75955241 750500451 674545211 no 26.4084506457683 TraesCS3A01G165000 chr3A_170245085 chr3A 170245085 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 170245132 170252190 7059 4 0.0566652500354158 RFvsST 75955241 750500451 674545211 no 26.4084506457683 TraesCS3A01G165000 chr3A_170247481 chr3A 170247481 T T G G 4 synonymous_variant LOW transcript unique_Triplet 170245132 170252190 7059 4 0.0566652500354158 RFvsST 75955241 750500451 674545211 no 26.4084506457683 TraesCS3A01G165700 chr3A_170741846 chr3A 170741846 G G T T 4 missense_variant MODERATE transcript unique_Triplet 170741455 170742171 717 2 0.278940027894003 RFvsST 75955241 750500451 674545211 no 91.8355539290028 TraesCS3A01G165700 chr3A_170742124 chr3A 170742124 A A G G 4 synonymous_variant LOW transcript unique_Triplet 170741455 170742171 717 2 0.278940027894003 RFvsST 75955241 750500451 674545211 no 91.8355539290028 TraesCS3A01G166300 chr3A_171139061 chr3A 171139061 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 171137518 171138431 914 5 0.547045951859956 RFvsST 75955241 750500451 674545211 no 100.222807196613 TraesCS3A01G166300 chr3A_171137779 chr3A 171137779 T T C C 4 missense_variant MODERATE transcript non_Triplet 171137518 171138431 914 5 0.547045951859956 RFvsST 75955241 750500451 674545211 no 100.222807196613 TraesCS3A01G166300 chr3A_171138468 chr3A 171138468 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 171137518 171138431 914 5 0.547045951859956 RFvsST 75955241 750500451 674545211 no 100.222807196613 TraesCS3A01G166300 chr3A_171138854 chr3A 171138854 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 171137518 171138431 914 5 0.547045951859956 RFvsST 75955241 750500451 674545211 no 100.222807196613 TraesCS3A01G166300 chr3A_171139101 chr3A 171139101 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 171137518 171138431 914 5 0.547045951859956 RFvsST 75955241 750500451 674545211 no 100.222807196613 TraesCS3A01G166600 chr3A_171175534 chr3A 171175534 A A G G 4 synonymous_variant LOW transcript unique_Triplet 171174860 171179640 4781 5 0.104580631667015 RFvsST 75955241 750500451 674545211 no 10.9315340299103 TraesCS3A01G166600 chr3A_171176381 chr3A 171176381 A A G G 4 synonymous_variant LOW transcript unique_Triplet 171174860 171179640 4781 5 0.104580631667015 RFvsST 75955241 750500451 674545211 no 10.9315340299103 TraesCS3A01G166600 chr3A_171174878 chr3A 171174878 A A G G 4 synonymous_variant LOW transcript unique_Triplet 171174860 171179640 4781 5 0.104580631667015 RFvsST 75955241 750500451 674545211 no 10.9315340299103 TraesCS3A01G166600 chr3A_171179665 chr3A 171179665 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 171174860 171179640 4781 5 0.104580631667015 RFvsST 75955241 750500451 674545211 no 10.9315340299103 TraesCS3A01G166600 chr3A_171175105 chr3A 171175105 C C T T 4 synonymous_variant LOW transcript unique_Triplet 171174860 171179640 4781 5 0.104580631667015 RFvsST 75955241 750500451 674545211 no 10.9315340299103 TraesCS3A01G167200 chr3A_172964376 chr3A 172964376 G G A A 4 synonymous_variant LOW transcript unique_Triplet 172963538 172966149 2612 4 0.153139356814701 RFvsST 75955241 750500451 674545211 no 862.69149208823 TraesCS3A01G167200 chr3A_172964241 chr3A 172964241 T T C C 4 synonymous_variant LOW transcript unique_Triplet 172963538 172966149 2612 4 0.153139356814701 RFvsST 75955241 750500451 674545211 no 862.69149208823 TraesCS3A01G167200 chr3A_172964615 chr3A 172964615 G G C C 4 synonymous_variant LOW transcript unique_Triplet 172963538 172966149 2612 4 0.153139356814701 RFvsST 75955241 750500451 674545211 no 862.69149208823 TraesCS3A01G167200 chr3A_172963588 chr3A 172963588 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 172963538 172966149 2612 4 0.153139356814701 RFvsST 75955241 750500451 674545211 no 862.69149208823 TraesCS3A01G168400 chr3A_175850881 chr3A 175850881 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 175844695 175846642 1948 1 0.0513347022587269 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G168600 chr3A_175922567 chr3A 175922567 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 175920771 175921406 636 2 0.314465408805031 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G168600 chr3A_175922866 chr3A 175922866 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 175920771 175921406 636 2 0.314465408805031 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G169100 chr3A_177087911 chr3A 177087911 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 177087106 177087783 678 1 0.147492625368732 RFvsST 75955241 750500451 674545211 no 7.94982415597999 TraesCS3A01G169400 chr3A_177672268 chr3A 177672268 T T C C 4 missense_variant MODERATE transcript non_Triplet 177671775 177672479 705 2 0.283687943262411 RFvsST 75955241 750500451 674545211 no 107.841287410131 TraesCS3A01G169400 chr3A_177672384 chr3A 177672384 A A G G 4 missense_variant MODERATE transcript non_Triplet 177671775 177672479 705 2 0.283687943262411 RFvsST 75955241 750500451 674545211 no 107.841287410131 TraesCS3A01G169700 chr3A_177889076 chr3A 177889076 T T G G 4 stop_gained HIGH transcript nonUnique_Triplet 177888060 177889088 1029 5 0.485908649173955 RFvsST 75955241 750500451 674545211 no 506.914583622075 TraesCS3A01G169700 chr3A_177889103 chr3A 177889103 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 177888060 177889088 1029 5 0.485908649173955 RFvsST 75955241 750500451 674545211 no 506.914583622075 TraesCS3A01G169700 chr3A_177887999 chr3A 177887999 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 177888060 177889088 1029 5 0.485908649173955 RFvsST 75955241 750500451 674545211 no 506.914583622075 TraesCS3A01G169700 chr3A_177888168 chr3A 177888168 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 177888060 177889088 1029 5 0.485908649173955 RFvsST 75955241 750500451 674545211 no 506.914583622075 TraesCS3A01G169700 chr3A_177888826 chr3A 177888826 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 177888060 177889088 1029 5 0.485908649173955 RFvsST 75955241 750500451 674545211 no 506.914583622075 TraesCS3A01G170000 chr3A_178132404 chr3A 178132404 T T C C 4 missense_variant MODERATE transcript unique_Triplet 178132215 178132985 771 1 0.12970168612192 RFvsST 75955241 750500451 674545211 no 136.055249668094 TraesCS3A01G170300 chr3A_178249201 chr3A 178249201 G G A A 4 missense_variant MODERATE transcript unique_Triplet 178245081 178251420 6340 1 0.0157728706624606 RFvsST 75955241 750500451 674545211 no 586.314198535398 TraesCS3A01G170600 chr3A_178261267 chr3A 178261267 T T C C 4 missense_variant MODERATE transcript unique_Triplet 178256472 178261384 4913 2 0.0407083248524323 RFvsST 75955241 750500451 674545211 no 33.968844196342 TraesCS3A01G170600 chr3A_178261474 chr3A 178261474 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 178256472 178261384 4913 2 0.0407083248524323 RFvsST 75955241 750500451 674545211 no 33.968844196342 TraesCS3A01G170800 chr3A_179534945 chr3A 179534945 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 179535069 179537680 2612 1 0.0382848392036753 RFvsST 75955241 750500451 674545211 no 488.42707690439 TraesCS3A01G171300 chr3A_185175231 chr3A 185175231 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 185173866 185175063 1198 1 0.0834724540901502 RFvsST 75955241 750500451 674545211 no 170.945961314221 TraesCS3A01G171600 chr3A_186048220 chr3A 186048220 G G A A 4 synonymous_variant LOW transcript unique_Triplet 186043328 186050141 6814 2 0.0293513354857646 RFvsST 75955241 750500451 674545211 no 142.10233730217 TraesCS3A01G171600 chr3A_186048110 chr3A 186048110 C C T T 4 missense_variant MODERATE transcript unique_Triplet 186043328 186050141 6814 2 0.0293513354857646 RFvsST 75955241 750500451 674545211 no 142.10233730217 TraesCS3A01G172000 chr3A_186750075 chr3A 186750075 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 186745929 186749707 3779 1 0.0264620269912675 RFvsST 75955241 750500451 674545211 no 89.7541082234608 TraesCS3A01G172200 chr3A_186845441 chr3A 186845441 G G C C 4 missense_variant MODERATE transcript unique_Triplet 186845436 186852406 6971 1 0.0143451441686989 RFvsST 75955241 750500451 674545211 no 209.214829585488 TraesCS3A01G173000 chr3A_189316532 chr3A 189316532 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 189316632 189319811 3180 5 0.157232704402516 RFvsST 75955241 750500451 674545211 no 801.726436732108 TraesCS3A01G173000 chr3A_189316618 chr3A 189316618 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 189316632 189319811 3180 5 0.157232704402516 RFvsST 75955241 750500451 674545211 no 801.726436732108 TraesCS3A01G173000 chr3A_189316443 chr3A 189316443 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 189316632 189319811 3180 5 0.157232704402516 RFvsST 75955241 750500451 674545211 no 801.726436732108 TraesCS3A01G173000 chr3A_189316896 chr3A 189316896 C C G G 4 synonymous_variant LOW transcript unique_Triplet 189316632 189319811 3180 5 0.157232704402516 RFvsST 75955241 750500451 674545211 no 801.726436732108 TraesCS3A01G173000 chr3A_189319683 chr3A 189319683 C C G G 4 synonymous_variant LOW transcript unique_Triplet 189316632 189319811 3180 5 0.157232704402516 RFvsST 75955241 750500451 674545211 no 801.726436732108 TraesCS3A01G173300 chr3A_191527845 chr3A 191527845 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 191527978 191538980 11003 5 0.0454421521403254 RFvsST 75955241 750500451 674545211 no 139.73609453544 TraesCS3A01G173300 chr3A_191539060 chr3A 191539060 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191527978 191538980 11003 5 0.0454421521403254 RFvsST 75955241 750500451 674545211 no 139.73609453544 TraesCS3A01G173300 chr3A_191538981 chr3A 191538981 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191527978 191538980 11003 5 0.0454421521403254 RFvsST 75955241 750500451 674545211 no 139.73609453544 TraesCS3A01G173300 chr3A_191530707 chr3A 191530707 C A C A 3 missense_variant MODERATE transcript unique_Triplet 191527978 191538980 11003 5 0.0454421521403254 RFvsST 75955241 750500451 674545211 no 139.73609453544 TraesCS3A01G173300 chr3A_191539033 chr3A 191539033 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191527978 191538980 11003 5 0.0454421521403254 RFvsST 75955241 750500451 674545211 no 139.73609453544 TraesCS3A01G173500 chr3A_191842031 chr3A 191842031 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191837340 191837522 183 1 0.546448087431694 RFvsST 75955241 750500451 674545211 no 50.159126741411 TraesCS3A01G173600 chr3A_191842290 chr3A 191842290 T T G G 4 missense_variant MODERATE transcript non_Triplet 191842082 191842297 216 2 0.925925925925926 RFvsST 75955241 750500451 674545211 no 18.6978867155945 TraesCS3A01G173600 chr3A_191842291 chr3A 191842291 T T C C 4 missense_variant MODERATE transcript non_Triplet 191842082 191842297 216 2 0.925925925925926 RFvsST 75955241 750500451 674545211 no 18.6978867155945 TraesCS3A01G174200 chr3A_192849463 chr3A 192849463 G G T T 4 missense_variant MODERATE transcript non_Triplet 192849290 192849930 641 3 0.46801872074883 RFvsST 75955241 750500451 674545211 no 7.68711206411927 TraesCS3A01G174200 chr3A_192849253 chr3A 192849253 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 192849290 192849930 641 3 0.46801872074883 RFvsST 75955241 750500451 674545211 no 7.68711206411927 TraesCS3A01G174200 chr3A_192851253 chr3A 192851253 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 192849290 192849930 641 3 0.46801872074883 RFvsST 75955241 750500451 674545211 no 7.68711206411927 TraesCS3A01G174500 chr3A_193605509 chr3A 193605509 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 193597951 193603234 5284 1 0.0189250567751703 RFvsST 75955241 750500451 674545211 no 442.482787231717 TraesCS3A01G174600 chr3A_193874588 chr3A 193874588 A A T T 4 synonymous_variant LOW transcript non_Triplet 193873759 193879224 5466 5 0.0914745700695207 RFvsST 75955241 750500451 674545211 no 121.545301125614 TraesCS3A01G174600 chr3A_193876050 chr3A 193876050 C C G G 4 missense_variant MODERATE transcript non_Triplet 193873759 193879224 5466 5 0.0914745700695207 RFvsST 75955241 750500451 674545211 no 121.545301125614 TraesCS3A01G174600 chr3A_193878934 chr3A 193878934 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 193873759 193879224 5466 5 0.0914745700695207 RFvsST 75955241 750500451 674545211 no 121.545301125614 TraesCS3A01G174600 chr3A_193875359 chr3A 193875359 A A G G 4 missense_variant MODERATE transcript non_Triplet 193873759 193879224 5466 5 0.0914745700695207 RFvsST 75955241 750500451 674545211 no 121.545301125614 TraesCS3A01G174600 chr3A_193876232 chr3A 193876232 A A C C 4 synonymous_variant LOW transcript non_Triplet 193873759 193879224 5466 5 0.0914745700695207 RFvsST 75955241 750500451 674545211 no 121.545301125614 TraesCS3A01G175000 chr3A_194804778 chr3A 194804778 A A T T 4 splice_region_variant&intron_variant LOW transcript non_Triplet 194804321 194808358 4038 1 0.0247647350173353 RFvsST 75955241 750500451 674545211 no 471.233606266521 TraesCS3A01G175300 chr3A_195183334 chr3A 195183334 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 195184696 195187552 2857 2 0.0700035001750088 RFvsST 75955241 750500451 674545211 no 4.16750836218237 TraesCS3A01G175300 chr3A_195183310 chr3A 195183310 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 195184696 195187552 2857 2 0.0700035001750088 RFvsST 75955241 750500451 674545211 no 4.16750836218237 TraesCS3A01G176900 chr3A_198490063 chr3A 198490063 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 198489491 198494024 4534 1 0.0220555800617556 RFvsST 75955241 750500451 674545211 no 344.097646501834 TraesCS3A01G178200 chr3A_202638797 chr3A 202638797 C T C T 3 synonymous_variant LOW transcript non_Triplet 202638266 202639829 1564 1 0.0639386189258312 RFvsST 75955241 750500451 674545211 no 66.5100843910123 TraesCS3A01G181600 chr3A_210099158 chr3A 210099158 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 210092959 210094363 1405 1 0.0711743772241993 RFvsST 75955241 750500451 674545211 no 16.0903471667283 TraesCS3A01G187300 chr3A_223521296 chr3A 223521296 C C G G 4 synonymous_variant LOW transcript unique_Triplet 223521249 223533758 12510 1 0.00799360511590727 RFvsST 75955241 750500451 674545211 no 69.0773300238663 TraesCS3A01G191200 chr3A_241926505 chr3A 241926505 C T C T 3 missense_variant MODERATE transcript non_Triplet 241924419 241927309 2891 1 0.0345901072293324 RFvsST 75955241 750500451 674545211 no 123.811212163412 TraesCS3A01G193400 chr3A_262526174 chr3A 262526174 G A G A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 262522375 262526240 3866 1 0.0258665287118469 RFvsST 75955241 750500451 674545211 no 36.6243279679077 TraesCS3A01G193900 chr3A_266691282 chr3A 266691282 G A G A 3 missense_variant MODERATE transcript non_Triplet 266689314 266694296 4983 1 0.0200682319887618 RFvsST 75955241 750500451 674545211 no 152.356638626461 TraesCS3A01G194300 chr3A_269670959 chr3A 269670959 G A G A 3 synonymous_variant LOW transcript non_Triplet 269648325 269671110 22786 1 0.0043886597033266 RFvsST 75955241 750500451 674545211 no 103.469851228482 TraesCS3A01G196100 chr3A_293585839 chr3A 293585839 C T C T 3 synonymous_variant LOW transcript non_Triplet 293585783 293591265 5483 1 0.0182381907714755 RFvsST 75955241 750500451 674545211 no 335.531502098405 TraesCS3A01G196200 chr3A_295949308 chr3A 295949308 C A C A 3 intron_variant MODIFIER transcript non_Triplet 295947787 295950609 2823 1 0.0354233085370174 RFvsST 75955241 750500451 674545211 no 34.7782153743285 TraesCS3A01G196400 chr3A_298147679 chr3A 298147679 C C T T 4 missense_variant MODERATE transcript non_Triplet 298146541 298175467 28927 1 0.00345697790991116 RFvsST 75955241 750500451 674545211 no 425.899667566731 TraesCS3A01G196800 chr3A_302928179 chr3A 302928179 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 302928187 302928558 372 1 0.268817204301075 RFvsST 75955241 750500451 674545211 no 10.7113460405346 TraesCS3A01G197700 chr3A_309341212 chr3A 309341212 G A G A 3 missense_variant MODERATE transcript non_Triplet 309338625 309354492 15868 1 0.00630199142929166 RFvsST 75955241 750500451 674545211 no 204.924805235644 TraesCS3A01G197900 chr3A_311982583 chr3A 311982583 G C G C 3 missense_variant MODERATE transcript non_Triplet 311982417 312015005 32589 1 0.00306852005277855 RFvsST 75955241 750500451 674545211 no 228.491711425106 TraesCS3A01G199600 chr3A_326464823 chr3A 326464823 G T G T 3 missense_variant MODERATE transcript non_Triplet 326462205 326464996 2792 1 0.0358166189111748 RFvsST 75955241 750500451 674545211 no 425.628555473811 TraesCS3A01G201200 chr3A_335471713 chr3A 335471713 C T C T 3 missense_variant MODERATE transcript non_Triplet 335459458 335483527 24070 1 0.00415454923140839 RFvsST 75955241 750500451 674545211 no 370.619830492916 TraesCS3A01G202700 chr3A_345868385 chr3A 345868385 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 345866551 345876292 9742 2 0.0205296653664545 RFvsST 75955241 750500451 674545211 no 276.131549457366 TraesCS3A01G202700 chr3A_345866341 chr3A 345866341 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 345866551 345876292 9742 2 0.0205296653664545 RFvsST 75955241 750500451 674545211 no 276.131549457366 TraesCS3A01G203300 chr3A_351125842 chr3A 351125842 C T C T 3 missense_variant MODERATE transcript non_Triplet 351124988 351128960 3973 1 0.0251698968034231 RFvsST 75955241 750500451 674545211 no 255.537713653237 TraesCS3A01G209200 chr3A_371628644 chr3A 371628644 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 371625407 371629461 4055 1 0.0246609124537608 RFvsST 75955241 750500451 674545211 no 318.59247315782 TraesCS3A01G217100 chr3A_395991367 chr3A 395991367 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 395991804 395992202 399 1 0.25062656641604 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G219000 chr3A_401710412 chr3A 401710412 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 401710512 401713217 2706 1 0.0369549150036955 RFvsST 75955241 750500451 674545211 no 18.9585807416798 TraesCS3A01G220400 chr3A_406299632 chr3A 406299632 T C T C 3 synonymous_variant LOW transcript unique_Triplet 406298987 406300309 1323 2 0.151171579743008 RFvsST 75955241 750500451 674545211 no 126.813376558522 TraesCS3A01G220400 chr3A_406299413 chr3A 406299413 A A G G 4 synonymous_variant LOW transcript unique_Triplet 406298987 406300309 1323 2 0.151171579743008 RFvsST 75955241 750500451 674545211 no 126.813376558522 TraesCS3A01G220800 chr3A_408948678 chr3A 408948678 T G T G 3 synonymous_variant LOW transcript unique_Triplet 408947798 408949534 1737 1 0.0575705238917674 RFvsST 75955241 750500451 674545211 no 354.307859675805 TraesCS3A01G222900 chr3A_416449734 chr3A 416449734 T T G G 4 missense_variant MODERATE transcript unique_Triplet 416448844 416450897 2054 1 0.0486854917234664 RFvsST 75955241 750500451 674545211 no 143.635699751318 TraesCS3A01G223400 chr3A_417927970 chr3A 417927970 T T C C 4 missense_variant MODERATE transcript unique_Triplet 417920635 417931472 10838 2 0.0184535892231039 RFvsST 75955241 750500451 674545211 no 120.177739364996 TraesCS3A01G223400 chr3A_417928828 chr3A 417928828 C C T T 4 synonymous_variant LOW transcript unique_Triplet 417920635 417931472 10838 2 0.0184535892231039 RFvsST 75955241 750500451 674545211 no 120.177739364996 TraesCS3A01G226600 chr3A_423967793 chr3A 423967793 G G C C 4 synonymous_variant LOW transcript unique_Triplet 423967370 423968670 1301 1 0.0768639508070715 RFvsST 75955241 750500451 674545211 no 245.520354804693 TraesCS3A01G227700 chr3A_425606954 chr3A 425606954 G A G A 3 synonymous_variant LOW transcript unique_Triplet 425603098 425607121 4024 1 0.0248508946322068 RFvsST 75955241 750500451 674545211 no 475.460152589106 TraesCS3A01G229400 chr3A_429463819 chr3A 429463819 C T C T 3 synonymous_variant LOW transcript unique_Triplet 429462674 429464779 2106 1 0.0474833808167142 RFvsST 75955241 750500451 674545211 no 356.074485862376 TraesCS3A01G230400 chr3A_430658089 chr3A 430658089 T T C C 4 missense_variant MODERATE transcript unique_Triplet 430657467 430667485 10019 2 0.0199620720630801 RFvsST 75955241 750500451 674545211 no 39.8698486168475 TraesCS3A01G230400 chr3A_430667425 chr3A 430667425 T T C C 4 missense_variant MODERATE transcript unique_Triplet 430657467 430667485 10019 2 0.0199620720630801 RFvsST 75955241 750500451 674545211 no 39.8698486168475 TraesCS3A01G230500 chr3A_430779525 chr3A 430779525 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 430775652 430779362 3711 1 0.0269469145782808 RFvsST 75955241 750500451 674545211 no 68.5802195493539 TraesCS3A01G230600 chr3A_430790353 chr3A 430790353 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 430787057 430790113 3057 1 0.0327118089630357 RFvsST 75955241 750500451 674545211 no 54.8060739564866 TraesCS3A01G230700 chr3A_430793791 chr3A 430793791 C C T T 4 synonymous_variant LOW transcript unique_Triplet 430791393 430796798 5406 1 0.0184979652238254 RFvsST 75955241 750500451 674545211 no 52.6890589171093 TraesCS3A01G231000 chr3A_431121845 chr3A 431121845 T T C C 4 intron_variant MODIFIER transcript nonUnique_Triplet 431119443 431125379 5937 1 0.0168435236651507 RFvsST 75955241 750500451 674545211 no 46.0841581157711 TraesCS3A01G231900 chr3A_433410408 chr3A 433410408 C C T T 4 missense_variant MODERATE transcript unique_Triplet 433409078 433410427 1350 1 0.0740740740740741 RFvsST 75955241 750500451 674545211 no 113.391976281872 TraesCS3A01G232100 chr3A_433554116 chr3A 433554116 T T C C 4 missense_variant MODERATE transcript unique_Triplet 433551131 433556520 5390 1 0.0185528756957328 RFvsST 75955241 750500451 674545211 no 11.7881074535224 TraesCS3A01G232700 chr3A_434613968 chr3A 434613968 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 434614176 434620017 5842 1 0.0171174255391989 RFvsST 75955241 750500451 674545211 no 181.797624807585 TraesCS3A01G244300 chr3A_457487333 chr3A 457487333 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457487119 457489144 2026 2 0.0987166831194472 RFvsST 75955241 750500451 674545211 no 278.332867426474 TraesCS3A01G244300 chr3A_457487301 chr3A 457487301 C C T T 4 synonymous_variant LOW transcript unique_Triplet 457487119 457489144 2026 2 0.0987166831194472 RFvsST 75955241 750500451 674545211 no 278.332867426474 TraesCS3A01G244400 chr3A_457490822 chr3A 457490822 G G A A 4 synonymous_variant LOW transcript unique_Triplet 457490249 457491134 886 2 0.225733634311512 RFvsST 75955241 750500451 674545211 no 58.7465240571804 TraesCS3A01G244400 chr3A_457490503 chr3A 457490503 C C T T 4 missense_variant MODERATE transcript unique_Triplet 457490249 457491134 886 2 0.225733634311512 RFvsST 75955241 750500451 674545211 no 58.7465240571804 TraesCS3A01G244500 chr3A_457635285 chr3A 457635285 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 457629401 457635625 6225 3 0.0481927710843373 RFvsST 75955241 750500451 674545211 no 208.375441122356 TraesCS3A01G244500 chr3A_457633248 chr3A 457633248 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 457629401 457635625 6225 3 0.0481927710843373 RFvsST 75955241 750500451 674545211 no 208.375441122356 TraesCS3A01G244500 chr3A_457629797 chr3A 457629797 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 457629401 457635625 6225 3 0.0481927710843373 RFvsST 75955241 750500451 674545211 no 208.375441122356 TraesCS3A01G245700 chr3A_460811538 chr3A 460811538 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 460811425 460824851 13427 1 0.00744768004766515 RFvsST 75955241 750500451 674545211 no 596.130827854024 TraesCS3A01G246500 chr3A_463127925 chr3A 463127925 T A T A 3 missense_variant MODERATE transcript unique_Triplet 463125879 463134207 8329 2 0.0240124864929763 RFvsST 75955241 750500451 674545211 no 258.75600980582 TraesCS3A01G246500 chr3A_463127926 chr3A 463127926 G T G T 3 synonymous_variant LOW transcript unique_Triplet 463125879 463134207 8329 2 0.0240124864929763 RFvsST 75955241 750500451 674545211 no 258.75600980582 TraesCS3A01G248200 chr3A_466111373 chr3A 466111373 C T C T 3 missense_variant MODERATE transcript unique_Triplet 466111098 466112622 1525 1 0.0655737704918033 RFvsST 75955241 750500451 674545211 no 399.514839429851 TraesCS3A01G248800 chr3A_466807151 chr3A 466807151 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 466787188 466811155 23968 2 0.00834445927903872 RFvsST 75955241 750500451 674545211 no 30.4940007745569 TraesCS3A01G248800 chr3A_466808650 chr3A 466808650 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 466787188 466811155 23968 2 0.00834445927903872 RFvsST 75955241 750500451 674545211 no 30.4940007745569 TraesCS3A01G251000 chr3A_470097288 chr3A 470097288 C T C T 3 missense_variant MODERATE transcript unique_Triplet 470091911 470099483 7573 1 0.013204806549584 RFvsST 75955241 750500451 674545211 no 93.6834328937845 TraesCS3A01G253000 chr3A_474433541 chr3A 474433541 G T G T 3 missense_variant MODERATE transcript unique_Triplet 474433211 474444199 10989 1 0.0091000091000091 RFvsST 75955241 750500451 674545211 no 268.885941447391 TraesCS3A01G268700 chr3A_495019140 chr3A 495019140 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 494996223 495015135 18913 2 0.0105747369534183 RFvsST 75955241 750500451 674545211 no 28.6702051965599 TraesCS3A01G268700 chr3A_495009671 chr3A 495009671 G A G A 3 missense_variant MODERATE transcript unique_Triplet 494996223 495015135 18913 2 0.0105747369534183 RFvsST 75955241 750500451 674545211 no 28.6702051965599 TraesCS3A01G268800 chr3A_495072571 chr3A 495072571 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 495072080 495074818 2739 4 0.146038700255568 RFvsST 75955241 750500451 674545211 no 1211.54989874238 TraesCS3A01G268800 chr3A_495074165 chr3A 495074165 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 495072080 495074818 2739 4 0.146038700255568 RFvsST 75955241 750500451 674545211 no 1211.54989874238 TraesCS3A01G268800 chr3A_495072647 chr3A 495072647 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 495072080 495074818 2739 4 0.146038700255568 RFvsST 75955241 750500451 674545211 no 1211.54989874238 TraesCS3A01G268800 chr3A_495073247 chr3A 495073247 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 495072080 495074818 2739 4 0.146038700255568 RFvsST 75955241 750500451 674545211 no 1211.54989874238 TraesCS3A01G269200 chr3A_495254184 chr3A 495254184 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 495251786 495256751 4966 1 0.0201369311316955 RFvsST 75955241 750500451 674545211 no 63.0114378018553 TraesCS3A01G269800 chr3A_496636900 chr3A 496636900 A G A G 3 synonymous_variant LOW transcript unique_Triplet 496636609 496637310 702 1 0.142450142450142 RFvsST 75955241 750500451 674545211 no 444.223204858426 TraesCS3A01G270000 chr3A_496704722 chr3A 496704722 T A T A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 496704577 496707384 2808 2 0.0712250712250712 RFvsST 75955241 750500451 674545211 no 87.9974914991587 TraesCS3A01G270000 chr3A_496704860 chr3A 496704860 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 496704577 496707384 2808 2 0.0712250712250712 RFvsST 75955241 750500451 674545211 no 87.9974914991587 TraesCS3A01G270100 chr3A_496989703 chr3A 496989703 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 496987494 496990491 2998 2 0.066711140760507 RFvsST 75955241 750500451 674545211 no 166.447301586207 TraesCS3A01G270100 chr3A_496987868 chr3A 496987868 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 496987494 496990491 2998 2 0.066711140760507 RFvsST 75955241 750500451 674545211 no 166.447301586207 TraesCS3A01G270500 chr3A_497655032 chr3A 497655032 T C T C 3 missense_variant MODERATE transcript unique_Triplet 497654555 497660730 6176 1 0.0161917098445596 RFvsST 75955241 750500451 674545211 no 103.251804278202 TraesCS3A01G270600 chr3A_497715700 chr3A 497715700 C G C G 3 missense_variant MODERATE transcript unique_Triplet 497710261 497717059 6799 3 0.0441241359023386 RFvsST 75955241 750500451 674545211 no 543.23385459382 TraesCS3A01G270600 chr3A_497716911 chr3A 497716911 A G A G 3 missense_variant MODERATE transcript unique_Triplet 497710261 497717059 6799 3 0.0441241359023386 RFvsST 75955241 750500451 674545211 no 543.23385459382 TraesCS3A01G270600 chr3A_497710662 chr3A 497710662 G C G C 3 missense_variant MODERATE transcript unique_Triplet 497710261 497717059 6799 3 0.0441241359023386 RFvsST 75955241 750500451 674545211 no 543.23385459382 TraesCS3A01G270800 chr3A_498235953 chr3A 498235953 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 498229179 498235869 6691 2 0.0298908982214916 RFvsST 75955241 750500451 674545211 no 210.497731668402 TraesCS3A01G270800 chr3A_498229201 chr3A 498229201 C T C T 3 missense_variant MODERATE transcript unique_Triplet 498229179 498235869 6691 2 0.0298908982214916 RFvsST 75955241 750500451 674545211 no 210.497731668402 TraesCS3A01G271100 chr3A_498774691 chr3A 498774691 G A G A 3 missense_variant MODERATE transcript unique_Triplet 498773026 498787861 14836 1 0.00674036128336479 RFvsST 75955241 750500451 674545211 no 103.688568993556 TraesCS3A01G271500 chr3A_500972811 chr3A 500972811 T C T C 3 synonymous_variant LOW transcript unique_Triplet 500969265 500973680 4416 1 0.0226449275362319 RFvsST 75955241 750500451 674545211 no 190.36833244747 TraesCS3A01G271600 chr3A_500974258 chr3A 500974258 C G C G 3 missense_variant MODERATE transcript unique_Triplet 500974145 500977229 3085 1 0.0324149108589951 RFvsST 75955241 750500451 674545211 no 1177.16667460333 TraesCS3A01G271700 chr3A_500978855 chr3A 500978855 A C A C 3 synonymous_variant LOW transcript unique_Triplet 500977975 500979026 1052 2 0.190114068441065 RFvsST 75955241 750500451 674545211 no 39.1670387824651 TraesCS3A01G271700 chr3A_500978395 chr3A 500978395 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 500977975 500979026 1052 2 0.190114068441065 RFvsST 75955241 750500451 674545211 no 39.1670387824651 TraesCS3A01G271900 chr3A_500994413 chr3A 500994413 C T C T 3 missense_variant MODERATE transcript unique_Triplet 500989024 500994826 5803 3 0.0516973978976391 RFvsST 75955241 750500451 674545211 no 45.4910110516226 TraesCS3A01G271900 chr3A_500994712 chr3A 500994712 A G A G 3 synonymous_variant LOW transcript unique_Triplet 500989024 500994826 5803 3 0.0516973978976391 RFvsST 75955241 750500451 674545211 no 45.4910110516226 TraesCS3A01G271900 chr3A_500987929 chr3A 500987929 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 500989024 500994826 5803 3 0.0516973978976391 RFvsST 75955241 750500451 674545211 no 45.4910110516226 TraesCS3A01G272000 chr3A_501222523 chr3A 501222523 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 501221358 501223384 2027 1 0.0493339911198816 RFvsST 75955241 750500451 674545211 no 185.453096299208 TraesCS3A01G272100 chr3A_501225242 chr3A 501225242 T C T C 3 missense_variant MODERATE transcript unique_Triplet 501225034 501234070 9037 2 0.0221312382427797 RFvsST 75955241 750500451 674545211 no 57.4760459494199 TraesCS3A01G272100 chr3A_501225198 chr3A 501225198 T C T C 3 missense_variant MODERATE transcript unique_Triplet 501225034 501234070 9037 2 0.0221312382427797 RFvsST 75955241 750500451 674545211 no 57.4760459494199 TraesCS3A01G272900 chr3A_502098808 chr3A 502098808 G A G A 3 missense_variant MODERATE transcript unique_Triplet 502097382 502101101 3720 4 0.10752688172043 RFvsST 75955241 750500451 674545211 no 51.0772616470705 TraesCS3A01G272900 chr3A_502101077 chr3A 502101077 C A C A 3 missense_variant MODERATE transcript unique_Triplet 502097382 502101101 3720 4 0.10752688172043 RFvsST 75955241 750500451 674545211 no 51.0772616470705 TraesCS3A01G272900 chr3A_502098442 chr3A 502098442 C T C T 3 synonymous_variant LOW transcript unique_Triplet 502097382 502101101 3720 4 0.10752688172043 RFvsST 75955241 750500451 674545211 no 51.0772616470705 TraesCS3A01G272900 chr3A_502101080 chr3A 502101080 T C T C 3 synonymous_variant LOW transcript unique_Triplet 502097382 502101101 3720 4 0.10752688172043 RFvsST 75955241 750500451 674545211 no 51.0772616470705 TraesCS3A01G273300 chr3A_502386615 chr3A 502386615 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 502382792 502389142 6351 4 0.0629822075263738 RFvsST 75955241 750500451 674545211 no 259.488462380923 TraesCS3A01G273300 chr3A_502386827 chr3A 502386827 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 502382792 502389142 6351 4 0.0629822075263738 RFvsST 75955241 750500451 674545211 no 259.488462380923 TraesCS3A01G273300 chr3A_502384824 chr3A 502384824 G T G T 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 502382792 502389142 6351 4 0.0629822075263738 RFvsST 75955241 750500451 674545211 no 259.488462380923 TraesCS3A01G273300 chr3A_502388763 chr3A 502388763 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 502382792 502389142 6351 4 0.0629822075263738 RFvsST 75955241 750500451 674545211 no 259.488462380923 TraesCS3A01G273800 chr3A_502504994 chr3A 502504994 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 502509064 502510642 1579 1 0.0633312222925903 RFvsST 75955241 750500451 674545211 no 20.7076892110588 TraesCS3A01G275100 chr3A_504801907 chr3A 504801907 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 504798748 504803455 4708 2 0.0424808836023789 RFvsST 75955241 750500451 674545211 no 73.2379517245499 TraesCS3A01G275100 chr3A_504802153 chr3A 504802153 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 504798748 504803455 4708 2 0.0424808836023789 RFvsST 75955241 750500451 674545211 no 73.2379517245499 TraesCS3A01G279200 chr3A_508523106 chr3A 508523106 T C T C 3 synonymous_variant LOW transcript non_Triplet 508522695 508524034 1340 1 0.0746268656716418 RFvsST 75955241 750500451 674545211 no 24.0560373410245 TraesCS3A01G279700 chr3A_509021310 chr3A 509021310 C T C T 3 missense_variant MODERATE transcript non_Triplet 509020231 509021658 1428 2 0.140056022408964 RFvsST 75955241 750500451 674545211 no 248.311292942701 TraesCS3A01G279700 chr3A_509021486 chr3A 509021486 G A G A 3 missense_variant MODERATE transcript non_Triplet 509020231 509021658 1428 2 0.140056022408964 RFvsST 75955241 750500451 674545211 no 248.311292942701 TraesCS3A01G279800 chr3A_509251105 chr3A 509251105 A G A G 3 synonymous_variant LOW transcript non_Triplet 509250162 509251768 1607 1 0.0622277535780958 RFvsST 75955241 750500451 674545211 no 1032.14889592034 TraesCS3A01G280600 chr3A_509548201 chr3A 509548201 C T C T 3 missense_variant MODERATE transcript unique_Triplet 509548196 509550801 2606 2 0.0767459708365311 RFvsST 75955241 750500451 674545211 no 365.569963964725 TraesCS3A01G280600 chr3A_509548548 chr3A 509548548 C T C T 3 missense_variant MODERATE transcript unique_Triplet 509548196 509550801 2606 2 0.0767459708365311 RFvsST 75955241 750500451 674545211 no 365.569963964725 TraesCS3A01G280700 chr3A_509567172 chr3A 509567172 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 509564257 509566887 2631 2 0.0760167236792094 RFvsST 75955241 750500451 674545211 no 90.3664266608116 TraesCS3A01G280700 chr3A_509567036 chr3A 509567036 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 509564257 509566887 2631 2 0.0760167236792094 RFvsST 75955241 750500451 674545211 no 90.3664266608116 TraesCS3A01G281200 chr3A_510007314 chr3A 510007314 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 509998123 510005003 6881 1 0.0145327713995059 RFvsST 75955241 750500451 674545211 no 122.375726115728 TraesCS3A01G281600 chr3A_510300478 chr3A 510300478 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 510297832 510300462 2631 1 0.0380083618396047 RFvsST 75955241 750500451 674545211 no 7.24766875291121 TraesCS3A01G281800 chr3A_510597237 chr3A 510597237 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 510597078 510598980 1903 2 0.105097214923805 RFvsST 75955241 750500451 674545211 no 317.453384516913 TraesCS3A01G281800 chr3A_510598906 chr3A 510598906 G G A A 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 510597078 510598980 1903 2 0.105097214923805 RFvsST 75955241 750500451 674545211 no 317.453384516913 TraesCS3A01G282100 chr3A_510691505 chr3A 510691505 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 510689267 510691405 2139 1 0.0467508181393174 RFvsST 75955241 750500451 674545211 no 3256.93384293219 TraesCS3A01G282800 chr3A_511077161 chr3A 511077161 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 511074303 511078484 4182 1 0.0239120038259206 RFvsST 75955241 750500451 674545211 no 472.743831919591 TraesCS3A01G282900 chr3A_511601102 chr3A 511601102 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 511597445 511598800 1356 1 0.0737463126843658 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G283600 chr3A_512278314 chr3A 512278314 G C G C 3 missense_variant MODERATE transcript non_Triplet 512274783 512279834 5052 1 0.0197941409342835 RFvsST 75955241 750500451 674545211 no 288.922757974982 TraesCS3A01G284700 chr3A_513605149 chr3A 513605149 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 513605296 513610663 5368 2 0.03725782414307 RFvsST 75955241 750500451 674545211 no 215.689185690117 TraesCS3A01G284700 chr3A_513605110 chr3A 513605110 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 513605296 513610663 5368 2 0.03725782414307 RFvsST 75955241 750500451 674545211 no 215.689185690117 TraesCS3A01G284800 chr3A_513889303 chr3A 513889303 C T C T 3 missense_variant MODERATE transcript unique_Triplet 513889191 513891877 2687 3 0.111648678823967 RFvsST 75955241 750500451 674545211 no 437.11534018405 TraesCS3A01G284800 chr3A_513890065 chr3A 513890065 G C G C 3 missense_variant MODERATE transcript unique_Triplet 513889191 513891877 2687 3 0.111648678823967 RFvsST 75955241 750500451 674545211 no 437.11534018405 TraesCS3A01G284800 chr3A_513890308 chr3A 513890308 T T C C 4 missense_variant MODERATE transcript unique_Triplet 513889191 513891877 2687 3 0.111648678823967 RFvsST 75955241 750500451 674545211 no 437.11534018405 TraesCS3A01G285700 chr3A_514233236 chr3A 514233236 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 514233358 514236844 3487 1 0.0286779466590192 RFvsST 75955241 750500451 674545211 no 16.2518669390598 TraesCS3A01G288300 chr3A_516632224 chr3A 516632224 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 516632209 516634290 2082 1 0.048030739673391 RFvsST 75955241 750500451 674545211 no 94.2132759650682 TraesCS3A01G289900 chr3A_518899118 chr3A 518899118 T C T C 3 synonymous_variant LOW transcript unique_Triplet 518895363 518900994 5632 1 0.0177556818181818 RFvsST 75955241 750500451 674545211 no 169.160234944879 TraesCS3A01G294700 chr3A_528592688 chr3A 528592688 C T C T 3 synonymous_variant LOW transcript unique_Triplet 528591862 528596909 5048 1 0.0198098256735341 RFvsST 75955241 750500451 674545211 no 7.64299492727311 TraesCS3A01G295000 chr3A_529140470 chr3A 529140470 C T C T 3 missense_variant MODERATE transcript unique_Triplet 529140456 529143068 2613 1 0.0382701875239189 RFvsST 75955241 750500451 674545211 no 53.817432219057 TraesCS3A01G295500 chr3A_529772784 chr3A 529772784 T G T G 3 missense_variant MODERATE transcript unique_Triplet 529772154 529776503 4350 4 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 70.5734301854175 TraesCS3A01G295500 chr3A_529773292 chr3A 529773292 G T G T 3 synonymous_variant LOW transcript unique_Triplet 529772154 529776503 4350 4 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 70.5734301854175 TraesCS3A01G295500 chr3A_529775922 chr3A 529775922 G A G A 3 missense_variant MODERATE transcript unique_Triplet 529772154 529776503 4350 4 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 70.5734301854175 TraesCS3A01G295500 chr3A_529772163 chr3A 529772163 G T G T 3 missense_variant MODERATE transcript unique_Triplet 529772154 529776503 4350 4 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 70.5734301854175 TraesCS3A01G295900 chr3A_530197876 chr3A 530197876 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 530177773 530197697 19925 5 0.0250941028858218 RFvsST 75955241 750500451 674545211 no 8.55572183130641 TraesCS3A01G295900 chr3A_530187614 chr3A 530187614 G A G A 3 synonymous_variant LOW transcript unique_Triplet 530177773 530197697 19925 5 0.0250941028858218 RFvsST 75955241 750500451 674545211 no 8.55572183130641 TraesCS3A01G295900 chr3A_530195443 chr3A 530195443 C C T T 4 synonymous_variant LOW transcript unique_Triplet 530177773 530197697 19925 5 0.0250941028858218 RFvsST 75955241 750500451 674545211 no 8.55572183130641 TraesCS3A01G295900 chr3A_530191644 chr3A 530191644 G A G A 3 synonymous_variant LOW transcript unique_Triplet 530177773 530197697 19925 5 0.0250941028858218 RFvsST 75955241 750500451 674545211 no 8.55572183130641 TraesCS3A01G295900 chr3A_530178104 chr3A 530178104 G A G A 3 synonymous_variant LOW transcript unique_Triplet 530177773 530197697 19925 5 0.0250941028858218 RFvsST 75955241 750500451 674545211 no 8.55572183130641 TraesCS3A01G296000 chr3A_530433977 chr3A 530433977 T C T C 3 missense_variant MODERATE transcript unique_Triplet 530433868 530434938 1071 4 0.373482726423903 RFvsST 75955241 750500451 674545211 no 60.0396037502193 TraesCS3A01G296000 chr3A_530435492 chr3A 530435492 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 530433868 530434938 1071 4 0.373482726423903 RFvsST 75955241 750500451 674545211 no 60.0396037502193 TraesCS3A01G296000 chr3A_530435470 chr3A 530435470 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 530433868 530434938 1071 4 0.373482726423903 RFvsST 75955241 750500451 674545211 no 60.0396037502193 TraesCS3A01G296000 chr3A_530433841 chr3A 530433841 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 530433868 530434938 1071 4 0.373482726423903 RFvsST 75955241 750500451 674545211 no 60.0396037502193 TraesCS3A01G296100 chr3A_530435644 chr3A 530435644 G A G A 3 missense_variant MODERATE transcript non_Triplet 530435508 530437226 1719 1 0.058173356602676 RFvsST 75955241 750500451 674545211 no 176.045473992753 TraesCS3A01G296300 chr3A_530497351 chr3A 530497351 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 530496634 530497296 663 2 0.301659125188537 RFvsST 75955241 750500451 674545211 no 45.8449964955419 TraesCS3A01G296300 chr3A_530496631 chr3A 530496631 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 530496634 530497296 663 2 0.301659125188537 RFvsST 75955241 750500451 674545211 no 45.8449964955419 TraesCS3A01G296500 chr3A_531079782 chr3A 531079782 C C T T 4 missense_variant MODERATE transcript unique_Triplet 531079592 531082353 2762 1 0.0362056480811006 RFvsST 75955241 750500451 674545211 no 67.7732872856197 TraesCS3A01G296700 chr3A_531451417 chr3A 531451417 G T G T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 531447012 531451753 4742 2 0.0421762969211303 RFvsST 75955241 750500451 674545211 no 202.402594801978 TraesCS3A01G296700 chr3A_531451604 chr3A 531451604 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 531447012 531451753 4742 2 0.0421762969211303 RFvsST 75955241 750500451 674545211 no 202.402594801978 TraesCS3A01G297400 chr3A_532315836 chr3A 532315836 A T A T 3 missense_variant MODERATE transcript unique_Triplet 532315472 532320186 4715 4 0.0848356309650053 RFvsST 75955241 750500451 674545211 no 197.410584224841 TraesCS3A01G297400 chr3A_532315942 chr3A 532315942 C C T T 4 synonymous_variant LOW transcript unique_Triplet 532315472 532320186 4715 4 0.0848356309650053 RFvsST 75955241 750500451 674545211 no 197.410584224841 TraesCS3A01G297400 chr3A_532316290 chr3A 532316290 G G T T 4 synonymous_variant LOW transcript unique_Triplet 532315472 532320186 4715 4 0.0848356309650053 RFvsST 75955241 750500451 674545211 no 197.410584224841 TraesCS3A01G297400 chr3A_532315467 chr3A 532315467 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 532315472 532320186 4715 4 0.0848356309650053 RFvsST 75955241 750500451 674545211 no 197.410584224841 TraesCS3A01G297500 chr3A_532321839 chr3A 532321839 T C T C 3 synonymous_variant LOW transcript unique_Triplet 532320702 532325709 5008 3 0.0599041533546326 RFvsST 75955241 750500451 674545211 no 241.68833425581 TraesCS3A01G297500 chr3A_532325720 chr3A 532325720 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 532320702 532325709 5008 3 0.0599041533546326 RFvsST 75955241 750500451 674545211 no 241.68833425581 TraesCS3A01G297500 chr3A_532325304 chr3A 532325304 G A G A 3 synonymous_variant LOW transcript unique_Triplet 532320702 532325709 5008 3 0.0599041533546326 RFvsST 75955241 750500451 674545211 no 241.68833425581 TraesCS3A01G297700 chr3A_532448965 chr3A 532448965 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 532448384 532451100 2717 2 0.0736105999263894 RFvsST 75955241 750500451 674545211 no 20.3756804358972 TraesCS3A01G297700 chr3A_532448409 chr3A 532448409 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 532448384 532451100 2717 2 0.0736105999263894 RFvsST 75955241 750500451 674545211 no 20.3756804358972 TraesCS3A01G298200 chr3A_532645429 chr3A 532645429 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 532640521 532641474 954 2 0.209643605870021 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G298200 chr3A_532645083 chr3A 532645083 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 532640521 532641474 954 2 0.209643605870021 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G298300 chr3A_532650821 chr3A 532650821 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 532645728 532650854 5127 3 0.0585137507314219 RFvsST 75955241 750500451 674545211 no 656.137119379993 TraesCS3A01G298300 chr3A_532650885 chr3A 532650885 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532645728 532650854 5127 3 0.0585137507314219 RFvsST 75955241 750500451 674545211 no 656.137119379993 TraesCS3A01G298300 chr3A_532650891 chr3A 532650891 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532645728 532650854 5127 3 0.0585137507314219 RFvsST 75955241 750500451 674545211 no 656.137119379993 TraesCS3A01G298400 chr3A_532668948 chr3A 532668948 G G A A 4 missense_variant MODERATE transcript unique_Triplet 532663693 532672643 8951 2 0.0223438721930511 RFvsST 75955241 750500451 674545211 no 144.790412409711 TraesCS3A01G298400 chr3A_532663771 chr3A 532663771 C C G G 4 synonymous_variant LOW transcript unique_Triplet 532663693 532672643 8951 2 0.0223438721930511 RFvsST 75955241 750500451 674545211 no 144.790412409711 TraesCS3A01G298800 chr3A_532935413 chr3A 532935413 T T A A 4 intron_variant MODIFIER transcript unique_Triplet 532934791 532937611 2821 5 0.177242112725984 RFvsST 75955241 750500451 674545211 no 739.593860886939 TraesCS3A01G298800 chr3A_532934735 chr3A 532934735 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 532934791 532937611 2821 5 0.177242112725984 RFvsST 75955241 750500451 674545211 no 739.593860886939 TraesCS3A01G298800 chr3A_532937850 chr3A 532937850 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 532934791 532937611 2821 5 0.177242112725984 RFvsST 75955241 750500451 674545211 no 739.593860886939 TraesCS3A01G298800 chr3A_532937257 chr3A 532937257 C C T T 4 missense_variant MODERATE transcript unique_Triplet 532934791 532937611 2821 5 0.177242112725984 RFvsST 75955241 750500451 674545211 no 739.593860886939 TraesCS3A01G298800 chr3A_532937528 chr3A 532937528 C T C T 3 synonymous_variant LOW transcript unique_Triplet 532934791 532937611 2821 5 0.177242112725984 RFvsST 75955241 750500451 674545211 no 739.593860886939 TraesCS3A01G298900 chr3A_533078905 chr3A 533078905 C T C T 3 missense_variant MODERATE transcript unique_Triplet 533069784 533080811 11028 4 0.0362713093942691 RFvsST 75955241 750500451 674545211 no 180.650134946366 TraesCS3A01G298900 chr3A_533079242 chr3A 533079242 C C A A 4 missense_variant MODERATE transcript unique_Triplet 533069784 533080811 11028 4 0.0362713093942691 RFvsST 75955241 750500451 674545211 no 180.650134946366 TraesCS3A01G298900 chr3A_533069889 chr3A 533069889 A G A G 3 synonymous_variant LOW transcript unique_Triplet 533069784 533080811 11028 4 0.0362713093942691 RFvsST 75955241 750500451 674545211 no 180.650134946366 TraesCS3A01G298900 chr3A_533072777 chr3A 533072777 A G A G 3 synonymous_variant LOW transcript unique_Triplet 533069784 533080811 11028 4 0.0362713093942691 RFvsST 75955241 750500451 674545211 no 180.650134946366 TraesCS3A01G299000 chr3A_533128087 chr3A 533128087 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 533128217 533130650 2434 4 0.164338537387017 RFvsST 75955241 750500451 674545211 no 670.212264436738 TraesCS3A01G299000 chr3A_533130390 chr3A 533130390 A A G G 4 missense_variant MODERATE transcript unique_Triplet 533128217 533130650 2434 4 0.164338537387017 RFvsST 75955241 750500451 674545211 no 670.212264436738 TraesCS3A01G299000 chr3A_533128113 chr3A 533128113 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 533128217 533130650 2434 4 0.164338537387017 RFvsST 75955241 750500451 674545211 no 670.212264436738 TraesCS3A01G299000 chr3A_533130193 chr3A 533130193 G A G A 3 synonymous_variant LOW transcript unique_Triplet 533128217 533130650 2434 4 0.164338537387017 RFvsST 75955241 750500451 674545211 no 670.212264436738 TraesCS3A01G299200 chr3A_533624557 chr3A 533624557 C C A A 4 missense_variant MODERATE transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533624065 chr3A 533624065 C T C T 3 missense_variant MODERATE transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533623438 chr3A 533623438 A C A C 3 missense_variant MODERATE transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533625457 chr3A 533625457 T C T C 3 missense_variant MODERATE transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533625308 chr3A 533625308 A A G G 4 synonymous_variant LOW transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533625790 chr3A 533625790 C C T T 4 synonymous_variant LOW transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299200 chr3A_533625934 chr3A 533625934 T C T C 3 synonymous_variant LOW transcript unique_Triplet 533621197 533626509 5313 7 0.131752305665349 RFvsST 75955241 750500451 674545211 no 877.657661176713 TraesCS3A01G299300 chr3A_533626633 chr3A 533626633 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 533630236 533633367 3132 1 0.0319284802043423 RFvsST 75955241 750500451 674545211 no 50.4616157710323 TraesCS3A01G299500 chr3A_533658445 chr3A 533658445 C C G G 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 533658326 533662665 4340 1 0.0230414746543779 RFvsST 75955241 750500451 674545211 no 109.366877845493 TraesCS3A01G299900 chr3A_534182872 chr3A 534182872 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 534179995 534197401 17407 3 0.0172344459125639 RFvsST 75955241 750500451 674545211 no 187.098775802579 TraesCS3A01G299900 chr3A_534182896 chr3A 534182896 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 534179995 534197401 17407 3 0.0172344459125639 RFvsST 75955241 750500451 674545211 no 187.098775802579 TraesCS3A01G299900 chr3A_534179960 chr3A 534179960 A T A T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 534179995 534197401 17407 3 0.0172344459125639 RFvsST 75955241 750500451 674545211 no 187.098775802579 TraesCS3A01G300800 chr3A_534543886 chr3A 534543886 G G A A 4 synonymous_variant LOW transcript unique_Triplet 534536760 534550662 13903 2 0.0143853844493994 RFvsST 75955241 750500451 674545211 no 222.530980773994 TraesCS3A01G300800 chr3A_534545845 chr3A 534545845 C C T T 4 missense_variant MODERATE transcript unique_Triplet 534536760 534550662 13903 2 0.0143853844493994 RFvsST 75955241 750500451 674545211 no 222.530980773994 TraesCS3A01G301100 chr3A_534999284 chr3A 534999284 A A G G 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 534998409 535002839 4431 2 0.0451365380275333 RFvsST 75955241 750500451 674545211 no 614.788194126646 TraesCS3A01G301100 chr3A_534998370 chr3A 534998370 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 534998409 535002839 4431 2 0.0451365380275333 RFvsST 75955241 750500451 674545211 no 614.788194126646 TraesCS3A01G301400 chr3A_535194538 chr3A 535194538 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 535183908 535189593 5686 2 0.0351741118536757 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G301400 chr3A_535194466 chr3A 535194466 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 535183908 535189593 5686 2 0.0351741118536757 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G301500 chr3A_535191077 chr3A 535191077 C T C T 3 synonymous_variant LOW transcript unique_Triplet 535190864 535194465 3602 1 0.0277623542476402 RFvsST 75955241 750500451 674545211 no 20.1819768314556 TraesCS3A01G301800 chr3A_535224341 chr3A 535224341 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G301800 chr3A_535217848 chr3A 535217848 T T C C 4 synonymous_variant LOW transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G301800 chr3A_535216402 chr3A 535216402 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G301800 chr3A_535219211 chr3A 535219211 A A G G 4 synonymous_variant LOW transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G301800 chr3A_535218010 chr3A 535218010 A G A G 3 synonymous_variant LOW transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G301800 chr3A_535224309 chr3A 535224309 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 535216536 535219436 2901 6 0.206825232678387 RFvsST 75955241 750500451 674545211 no 164.641577552955 TraesCS3A01G302100 chr3A_535326733 chr3A 535326733 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 535323796 535326693 2898 2 0.0690131124913734 RFvsST 75955241 750500451 674545211 no 311.601467646847 TraesCS3A01G302100 chr3A_535323686 chr3A 535323686 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 535323796 535326693 2898 2 0.0690131124913734 RFvsST 75955241 750500451 674545211 no 311.601467646847 TraesCS3A01G302200 chr3A_535550658 chr3A 535550658 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 535543759 535550603 6845 2 0.029218407596786 RFvsST 75955241 750500451 674545211 no 265.460047145384 TraesCS3A01G302200 chr3A_535543751 chr3A 535543751 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 535543759 535550603 6845 2 0.029218407596786 RFvsST 75955241 750500451 674545211 no 265.460047145384 TraesCS3A01G302400 chr3A_535728147 chr3A 535728147 T T A A 4 missense_variant MODERATE transcript unique_Triplet 535727238 535728616 1379 1 0.0725163161711385 RFvsST 75955241 750500451 674545211 no 47.5282424512969 TraesCS3A01G302600 chr3A_536633102 chr3A 536633102 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 536626492 536628291 1800 5 0.277777777777778 RFvsST 75955241 750500451 674545211 no 583.701623790386 TraesCS3A01G302600 chr3A_536629470 chr3A 536629470 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 536626492 536628291 1800 5 0.277777777777778 RFvsST 75955241 750500451 674545211 no 583.701623790386 TraesCS3A01G302600 chr3A_536627704 chr3A 536627704 C A C A 3 missense_variant MODERATE transcript unique_Triplet 536626492 536628291 1800 5 0.277777777777778 RFvsST 75955241 750500451 674545211 no 583.701623790386 TraesCS3A01G302600 chr3A_536627994 chr3A 536627994 C C G G 4 missense_variant MODERATE transcript unique_Triplet 536626492 536628291 1800 5 0.277777777777778 RFvsST 75955241 750500451 674545211 no 583.701623790386 TraesCS3A01G302600 chr3A_536627390 chr3A 536627390 T T C C 4 missense_variant MODERATE transcript unique_Triplet 536626492 536628291 1800 5 0.277777777777778 RFvsST 75955241 750500451 674545211 no 583.701623790386 TraesCS3A01G302700 chr3A_536634138 chr3A 536634138 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536634917 536639928 5012 5 0.0997605746209098 RFvsST 75955241 750500451 674545211 no 33.2008625883093 TraesCS3A01G302700 chr3A_536638217 chr3A 536638217 T T C C 4 synonymous_variant LOW transcript unique_Triplet 536634917 536639928 5012 5 0.0997605746209098 RFvsST 75955241 750500451 674545211 no 33.2008625883093 TraesCS3A01G302700 chr3A_536634049 chr3A 536634049 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 536634917 536639928 5012 5 0.0997605746209098 RFvsST 75955241 750500451 674545211 no 33.2008625883093 TraesCS3A01G302700 chr3A_536633922 chr3A 536633922 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536634917 536639928 5012 5 0.0997605746209098 RFvsST 75955241 750500451 674545211 no 33.2008625883093 TraesCS3A01G302700 chr3A_536634821 chr3A 536634821 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536634917 536639928 5012 5 0.0997605746209098 RFvsST 75955241 750500451 674545211 no 33.2008625883093 TraesCS3A01G302900 chr3A_536897461 chr3A 536897461 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536896430 536897266 837 3 0.3584229390681 RFvsST 75955241 750500451 674545211 no 125.955583974524 TraesCS3A01G302900 chr3A_536896473 chr3A 536896473 C C A A 4 missense_variant MODERATE transcript unique_Triplet 536896430 536897266 837 3 0.3584229390681 RFvsST 75955241 750500451 674545211 no 125.955583974524 TraesCS3A01G302900 chr3A_536897426 chr3A 536897426 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536896430 536897266 837 3 0.3584229390681 RFvsST 75955241 750500451 674545211 no 125.955583974524 TraesCS3A01G303100 chr3A_537499034 chr3A 537499034 T T G G 4 missense_variant MODERATE transcript unique_Triplet 537498276 537502030 3755 2 0.0532623169107856 RFvsST 75955241 750500451 674545211 no 49.8158078820657 TraesCS3A01G303100 chr3A_537501884 chr3A 537501884 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 537498276 537502030 3755 2 0.0532623169107856 RFvsST 75955241 750500451 674545211 no 49.8158078820657 TraesCS3A01G303200 chr3A_537508885 chr3A 537508885 C C T T 4 synonymous_variant LOW transcript unique_Triplet 537507634 537508903 1270 1 0.078740157480315 RFvsST 75955241 750500451 674545211 no 116.410461690513 TraesCS3A01G303400 chr3A_537736752 chr3A 537736752 T T C C 4 synonymous_variant LOW transcript unique_Triplet 537736537 537743630 7094 2 0.0281928390188892 RFvsST 75955241 750500451 674545211 no 14.5766777420642 TraesCS3A01G303400 chr3A_537736658 chr3A 537736658 G G C C 4 missense_variant MODERATE transcript unique_Triplet 537736537 537743630 7094 2 0.0281928390188892 RFvsST 75955241 750500451 674545211 no 14.5766777420642 TraesCS3A01G303500 chr3A_537745509 chr3A 537745509 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537745534 537746436 903 2 0.221483942414175 RFvsST 75955241 750500451 674545211 no 86.3904491983622 TraesCS3A01G303500 chr3A_537745478 chr3A 537745478 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 537745534 537746436 903 2 0.221483942414175 RFvsST 75955241 750500451 674545211 no 86.3904491983622 TraesCS3A01G303600 chr3A_538005444 chr3A 538005444 C C T T 4 missense_variant MODERATE transcript unique_Triplet 538005372 538009238 3867 1 0.0258598396689941 RFvsST 75955241 750500451 674545211 no 141.507672188187 TraesCS3A01G303700 chr3A_538011531 chr3A 538011531 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 538011681 538011854 174 1 0.574712643678161 RFvsST 75955241 750500451 674545211 no 10.8061945931862 TraesCS3A01G303800 chr3A_538014625 chr3A 538014625 C C A A 4 missense_variant MODERATE transcript unique_Triplet 538013899 538016913 3015 2 0.066334991708126 RFvsST 75955241 750500451 674545211 no 248.395965015763 TraesCS3A01G303800 chr3A_538014125 chr3A 538014125 T C T C 3 missense_variant MODERATE transcript unique_Triplet 538013899 538016913 3015 2 0.066334991708126 RFvsST 75955241 750500451 674545211 no 248.395965015763 TraesCS3A01G303900 chr3A_538836944 chr3A 538836944 G G A A 4 missense_variant MODERATE transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538846276 chr3A 538846276 C C T T 4 synonymous_variant LOW transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538846766 chr3A 538846766 G G A A 4 missense_variant MODERATE transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538847395 chr3A 538847395 C C T T 4 synonymous_variant LOW transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538836654 chr3A 538836654 C C T T 4 synonymous_variant LOW transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538846509 chr3A 538846509 G A G A 3 missense_variant MODERATE transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538847545 chr3A 538847545 C C A A 4 missense_variant MODERATE transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538834581 chr3A 538834581 C C T T 4 synonymous_variant LOW transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538831321 chr3A 538831321 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G303900 chr3A_538846606 chr3A 538846606 T T C C 4 synonymous_variant LOW transcript non_Triplet 538831355 538848100 16746 10 0.0597157530156455 RFvsST 75955241 750500451 674545211 no 696.923916460436 TraesCS3A01G304100 chr3A_539375776 chr3A 539375776 C C A A 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539376899 chr3A 539376899 A G A G 3 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539353012 chr3A 539353012 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539367100 chr3A 539367100 G G T T 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539366834 chr3A 539366834 C C A A 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539376450 chr3A 539376450 T T A A 4 synonymous_variant LOW transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539376804 chr3A 539376804 T T A A 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539359837 chr3A 539359837 G C G C 3 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539359285 chr3A 539359285 A A G G 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539359959 chr3A 539359959 A A G G 4 synonymous_variant LOW transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539375935 chr3A 539375935 T T A A 4 missense_variant MODERATE transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539376039 chr3A 539376039 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G304100 chr3A_539377836 chr3A 539377836 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539354191 539377107 22917 13 0.0567264476153074 RFvsST 75955241 750500451 674545211 no 992.630943931425 TraesCS3A01G315100 chr3A_556359513 chr3A 556359513 C C T T 4 missense_variant MODERATE transcript non_Triplet 556355044 556360111 5068 5 0.0986582478295186 RFvsST 75955241 750500451 674545211 no 170.801730850607 TraesCS3A01G315100 chr3A_556355105 chr3A 556355105 T T C C 4 missense_variant MODERATE transcript non_Triplet 556355044 556360111 5068 5 0.0986582478295186 RFvsST 75955241 750500451 674545211 no 170.801730850607 TraesCS3A01G315100 chr3A_556359135 chr3A 556359135 T T C C 4 missense_variant MODERATE transcript non_Triplet 556355044 556360111 5068 5 0.0986582478295186 RFvsST 75955241 750500451 674545211 no 170.801730850607 TraesCS3A01G315100 chr3A_556358670 chr3A 556358670 A A C C 4 missense_variant MODERATE transcript non_Triplet 556355044 556360111 5068 5 0.0986582478295186 RFvsST 75955241 750500451 674545211 no 170.801730850607 TraesCS3A01G315100 chr3A_556359292 chr3A 556359292 A A T T 4 missense_variant MODERATE transcript non_Triplet 556355044 556360111 5068 5 0.0986582478295186 RFvsST 75955241 750500451 674545211 no 170.801730850607 TraesCS3A01G315300 chr3A_556459633 chr3A 556459633 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 556454549 556456340 1792 1 0.0558035714285714 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G315500 chr3A_556462182 chr3A 556462182 G G C C 4 synonymous_variant LOW transcript unique_Triplet 556459704 556462394 2691 4 0.148643626904496 RFvsST 75955241 750500451 674545211 no 30.9592388892464 TraesCS3A01G315500 chr3A_556460453 chr3A 556460453 A A G G 4 synonymous_variant LOW transcript unique_Triplet 556459704 556462394 2691 4 0.148643626904496 RFvsST 75955241 750500451 674545211 no 30.9592388892464 TraesCS3A01G315500 chr3A_556462154 chr3A 556462154 C C T T 4 missense_variant MODERATE transcript unique_Triplet 556459704 556462394 2691 4 0.148643626904496 RFvsST 75955241 750500451 674545211 no 30.9592388892464 TraesCS3A01G315500 chr3A_556462334 chr3A 556462334 G G A A 4 missense_variant MODERATE transcript unique_Triplet 556459704 556462394 2691 4 0.148643626904496 RFvsST 75955241 750500451 674545211 no 30.9592388892464 TraesCS3A01G315600 chr3A_556552463 chr3A 556552463 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 556547559 556552605 5047 3 0.059441252229047 RFvsST 75955241 750500451 674545211 no 246.76588454663 TraesCS3A01G315600 chr3A_556552429 chr3A 556552429 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 556547559 556552605 5047 3 0.059441252229047 RFvsST 75955241 750500451 674545211 no 246.76588454663 TraesCS3A01G315600 chr3A_556552425 chr3A 556552425 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 556547559 556552605 5047 3 0.059441252229047 RFvsST 75955241 750500451 674545211 no 246.76588454663 TraesCS3A01G315900 chr3A_556670125 chr3A 556670125 T T G G 4 missense_variant MODERATE transcript unique_Triplet 556669206 556671230 2025 3 0.148148148148148 RFvsST 75955241 750500451 674545211 no 211.646952441734 TraesCS3A01G315900 chr3A_556670469 chr3A 556670469 G G A A 4 synonymous_variant LOW transcript unique_Triplet 556669206 556671230 2025 3 0.148148148148148 RFvsST 75955241 750500451 674545211 no 211.646952441734 TraesCS3A01G315900 chr3A_556669212 chr3A 556669212 G G A A 4 synonymous_variant LOW transcript unique_Triplet 556669206 556671230 2025 3 0.148148148148148 RFvsST 75955241 750500451 674545211 no 211.646952441734 TraesCS3A01G316700 chr3A_557408620 chr3A 557408620 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316700 chr3A_557409821 chr3A 557409821 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316700 chr3A_557409667 chr3A 557409667 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316700 chr3A_557409477 chr3A 557409477 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316700 chr3A_557409608 chr3A 557409608 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316700 chr3A_557410031 chr3A 557410031 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 557405559 557408136 2578 6 0.232738557020946 RFvsST 75955241 750500451 674545211 no 12.8281230945551 TraesCS3A01G316800 chr3A_557412377 chr3A 557412377 T C T C 3 missense_variant MODERATE transcript unique_Triplet 557410354 557413353 3000 3 0.1 RFvsST 75955241 750500451 674545211 no 351.680943625218 TraesCS3A01G316800 chr3A_557410834 chr3A 557410834 T C T C 3 synonymous_variant LOW transcript unique_Triplet 557410354 557413353 3000 3 0.1 RFvsST 75955241 750500451 674545211 no 351.680943625218 TraesCS3A01G316800 chr3A_557410356 chr3A 557410356 A C A C 3 stop_lost&splice_region_variant HIGH transcript unique_Triplet 557410354 557413353 3000 3 0.1 RFvsST 75955241 750500451 674545211 no 351.680943625218 TraesCS3A01G316900 chr3A_557422699 chr3A 557422699 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 557416052 557418175 2124 1 0.0470809792843691 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G317000 chr3A_557422332 chr3A 557422332 G A G A 3 synonymous_variant LOW transcript unique_Triplet 557421951 557422595 645 3 0.465116279069767 RFvsST 75955241 750500451 674545211 no 142.25307151048 TraesCS3A01G317000 chr3A_557422527 chr3A 557422527 C G C G 3 synonymous_variant LOW transcript unique_Triplet 557421951 557422595 645 3 0.465116279069767 RFvsST 75955241 750500451 674545211 no 142.25307151048 TraesCS3A01G317000 chr3A_557422038 chr3A 557422038 A G A G 3 synonymous_variant LOW transcript unique_Triplet 557421951 557422595 645 3 0.465116279069767 RFvsST 75955241 750500451 674545211 no 142.25307151048 TraesCS3A01G317400 chr3A_557956310 chr3A 557956310 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 557950747 557955232 4486 2 0.0445831475702185 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G317400 chr3A_557956266 chr3A 557956266 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 557950747 557955232 4486 2 0.0445831475702185 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G317500 chr3A_557956627 chr3A 557956627 G A G A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 557956393 557964178 7786 3 0.0385306961212433 RFvsST 75955241 750500451 674545211 no 169.232465601682 TraesCS3A01G317500 chr3A_557962176 chr3A 557962176 C T C T 3 synonymous_variant LOW transcript unique_Triplet 557956393 557964178 7786 3 0.0385306961212433 RFvsST 75955241 750500451 674545211 no 169.232465601682 TraesCS3A01G317500 chr3A_557959545 chr3A 557959545 G G A A 4 missense_variant MODERATE transcript unique_Triplet 557956393 557964178 7786 3 0.0385306961212433 RFvsST 75955241 750500451 674545211 no 169.232465601682 TraesCS3A01G317700 chr3A_558886118 chr3A 558886118 C T C T 3 missense_variant MODERATE transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558890672 chr3A 558890672 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558887532 chr3A 558887532 T C T C 3 synonymous_variant LOW transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558884773 chr3A 558884773 A G A G 3 missense_variant MODERATE transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558884157 chr3A 558884157 G A G A 3 missense_variant MODERATE transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558884699 chr3A 558884699 T T C C 4 synonymous_variant LOW transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558888196 chr3A 558888196 C T C T 3 synonymous_variant LOW transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G317700 chr3A_558890661 chr3A 558890661 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 558881458 558890650 9193 8 0.0870227346894376 RFvsST 75955241 750500451 674545211 no 521.701566969766 TraesCS3A01G318200 chr3A_559527053 chr3A 559527053 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 559526803 559527042 240 2 0.833333333333333 RFvsST 75955241 750500451 674545211 no 27.233539566984 TraesCS3A01G318200 chr3A_559527346 chr3A 559527346 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 559526803 559527042 240 2 0.833333333333333 RFvsST 75955241 750500451 674545211 no 27.233539566984 TraesCS3A01G318300 chr3A_559533257 chr3A 559533257 A G A G 3 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559530559 chr3A 559530559 A C A C 3 synonymous_variant LOW transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559528654 chr3A 559528654 C C G G 4 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559532786 chr3A 559532786 C T C T 3 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559538385 chr3A 559538385 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559528682 chr3A 559528682 A C A C 3 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559529521 chr3A 559529521 A G A G 3 synonymous_variant LOW transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559531071 chr3A 559531071 A G A G 3 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318300 chr3A_559531487 chr3A 559531487 A C A C 3 missense_variant MODERATE transcript unique_Triplet 559527403 559536926 9524 9 0.0944981100377992 RFvsST 75955241 750500451 674545211 no 166.545680638582 TraesCS3A01G318400 chr3A_559539719 chr3A 559539719 C C T T 4 synonymous_variant LOW transcript unique_Triplet 559538427 559544592 6166 2 0.0324359390204346 RFvsST 75955241 750500451 674545211 no 52.7820318314278 TraesCS3A01G318400 chr3A_559541854 chr3A 559541854 C C G G 4 missense_variant MODERATE transcript unique_Triplet 559538427 559544592 6166 2 0.0324359390204346 RFvsST 75955241 750500451 674545211 no 52.7820318314278 TraesCS3A01G319000 chr3A_561060762 chr3A 561060762 C T C T 3 synonymous_variant LOW transcript unique_Triplet 561059079 561062958 3880 4 0.103092783505155 RFvsST 75955241 750500451 674545211 no 23.9265944607754 TraesCS3A01G319000 chr3A_561061652 chr3A 561061652 G C G C 3 missense_variant MODERATE transcript unique_Triplet 561059079 561062958 3880 4 0.103092783505155 RFvsST 75955241 750500451 674545211 no 23.9265944607754 TraesCS3A01G319000 chr3A_561062603 chr3A 561062603 T C T C 3 missense_variant MODERATE transcript unique_Triplet 561059079 561062958 3880 4 0.103092783505155 RFvsST 75955241 750500451 674545211 no 23.9265944607754 TraesCS3A01G319000 chr3A_561061991 chr3A 561061991 G A G A 3 synonymous_variant LOW transcript unique_Triplet 561059079 561062958 3880 4 0.103092783505155 RFvsST 75955241 750500451 674545211 no 23.9265944607754 TraesCS3A01G319100 chr3A_561117102 chr3A 561117102 G G C C 4 missense_variant MODERATE transcript unique_Triplet 561090493 561119333 28841 1 0.00346728615512638 RFvsST 75955241 750500451 674545211 no 18.5523479118887 TraesCS3A01G319600 chr3A_562101565 chr3A 562101565 T C T C 3 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562102661 chr3A 562102661 C C T T 4 synonymous_variant LOW transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101229 chr3A 562101229 A T A T 3 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562102533 chr3A 562102533 C C T T 4 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562102584 chr3A 562102584 C T C T 3 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101848 chr3A 562101848 T C T C 3 synonymous_variant LOW transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101267 chr3A 562101267 G G A A 4 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101603 chr3A 562101603 G A G A 3 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101880 chr3A 562101880 G G A A 4 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101900 chr3A 562101900 G T G T 3 stop_gained HIGH transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101443 chr3A 562101443 G G A A 4 synonymous_variant LOW transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562102553 chr3A 562102553 T C T C 3 synonymous_variant LOW transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101558 chr3A 562101558 C T C T 3 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562101291 chr3A 562101291 G G A A 4 missense_variant MODERATE transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319600 chr3A_562102520 chr3A 562102520 C A C A 3 synonymous_variant LOW transcript unique_Triplet 562101036 562102739 1704 15 0.880281690140845 RFvsST 75955241 750500451 674545211 no 199.388404013903 TraesCS3A01G319800 chr3A_562284245 chr3A 562284245 G G A A 4 synonymous_variant LOW transcript unique_Triplet 562284188 562289362 5175 5 0.0966183574879227 RFvsST 75955241 750500451 674545211 no 306.822897772038 TraesCS3A01G319800 chr3A_562289465 chr3A 562289465 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 562284188 562289362 5175 5 0.0966183574879227 RFvsST 75955241 750500451 674545211 no 306.822897772038 TraesCS3A01G319800 chr3A_562289588 chr3A 562289588 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 562284188 562289362 5175 5 0.0966183574879227 RFvsST 75955241 750500451 674545211 no 306.822897772038 TraesCS3A01G319800 chr3A_562284080 chr3A 562284080 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 562284188 562289362 5175 5 0.0966183574879227 RFvsST 75955241 750500451 674545211 no 306.822897772038 TraesCS3A01G319800 chr3A_562284079 chr3A 562284079 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 562284188 562289362 5175 5 0.0966183574879227 RFvsST 75955241 750500451 674545211 no 306.822897772038 TraesCS3A01G319900 chr3A_562355368 chr3A 562355368 A G A G 3 missense_variant MODERATE transcript unique_Triplet 562350295 562356668 6374 4 0.0627549419516787 RFvsST 75955241 750500451 674545211 no 227.737307686803 TraesCS3A01G319900 chr3A_562350149 chr3A 562350149 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 562350295 562356668 6374 4 0.0627549419516787 RFvsST 75955241 750500451 674545211 no 227.737307686803 TraesCS3A01G319900 chr3A_562352222 chr3A 562352222 T T G G 4 missense_variant MODERATE transcript unique_Triplet 562350295 562356668 6374 4 0.0627549419516787 RFvsST 75955241 750500451 674545211 no 227.737307686803 TraesCS3A01G319900 chr3A_562349890 chr3A 562349890 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 562350295 562356668 6374 4 0.0627549419516787 RFvsST 75955241 750500451 674545211 no 227.737307686803 TraesCS3A01G320500 chr3A_563401134 chr3A 563401134 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 563401420 563402557 1138 2 0.175746924428822 RFvsST 75955241 750500451 674545211 no 72.3532693647396 TraesCS3A01G320500 chr3A_563401397 chr3A 563401397 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 563401420 563402557 1138 2 0.175746924428822 RFvsST 75955241 750500451 674545211 no 72.3532693647396 TraesCS3A01G320900 chr3A_564350025 chr3A 564350025 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564345648 564346735 1088 1 0.0919117647058823 RFvsST 75955241 750500451 674545211 no 4.64206658442392 TraesCS3A01G321000 chr3A_564348789 chr3A 564348789 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 564347671 564349843 2173 1 0.0460193281178095 RFvsST 75955241 750500451 674545211 no 204.017715843682 TraesCS3A01G321300 chr3A_564938252 chr3A 564938252 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 564932610 564942922 10313 5 0.0484824978182876 RFvsST 75955241 750500451 674545211 no 256.655321252655 TraesCS3A01G321300 chr3A_564943321 chr3A 564943321 C G C G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 564932610 564942922 10313 5 0.0484824978182876 RFvsST 75955241 750500451 674545211 no 256.655321252655 TraesCS3A01G321300 chr3A_564939777 chr3A 564939777 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 564932610 564942922 10313 5 0.0484824978182876 RFvsST 75955241 750500451 674545211 no 256.655321252655 TraesCS3A01G321300 chr3A_564936430 chr3A 564936430 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 564932610 564942922 10313 5 0.0484824978182876 RFvsST 75955241 750500451 674545211 no 256.655321252655 TraesCS3A01G321300 chr3A_564942505 chr3A 564942505 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 564932610 564942922 10313 5 0.0484824978182876 RFvsST 75955241 750500451 674545211 no 256.655321252655 TraesCS3A01G321400 chr3A_564944366 chr3A 564944366 C T C T 3 missense_variant MODERATE transcript unique_Triplet 564943513 564946489 2977 5 0.167954316425932 RFvsST 75955241 750500451 674545211 no 301.689077848497 TraesCS3A01G321400 chr3A_564943973 chr3A 564943973 T C T C 3 missense_variant MODERATE transcript unique_Triplet 564943513 564946489 2977 5 0.167954316425932 RFvsST 75955241 750500451 674545211 no 301.689077848497 TraesCS3A01G321400 chr3A_564946115 chr3A 564946115 C C G G 4 synonymous_variant LOW transcript unique_Triplet 564943513 564946489 2977 5 0.167954316425932 RFvsST 75955241 750500451 674545211 no 301.689077848497 TraesCS3A01G321400 chr3A_564946056 chr3A 564946056 G A G A 3 missense_variant MODERATE transcript unique_Triplet 564943513 564946489 2977 5 0.167954316425932 RFvsST 75955241 750500451 674545211 no 301.689077848497 TraesCS3A01G321400 chr3A_564944597 chr3A 564944597 A A G G 4 missense_variant MODERATE transcript unique_Triplet 564943513 564946489 2977 5 0.167954316425932 RFvsST 75955241 750500451 674545211 no 301.689077848497 TraesCS3A01G321700 chr3A_565355168 chr3A 565355168 A A G G 4 missense_variant MODERATE transcript unique_Triplet 565351931 565356963 5033 1 0.0198688654877806 RFvsST 75955241 750500451 674545211 no 1530.5472422284 TraesCS3A01G322000 chr3A_565466294 chr3A 565466294 C C T T 4 missense_variant MODERATE transcript unique_Triplet 565465284 565475277 9994 1 0.0100060036021613 RFvsST 75955241 750500451 674545211 no 36.1675848077465 TraesCS3A01G322100 chr3A_565768186 chr3A 565768186 A G A G 3 synonymous_variant LOW transcript non_Triplet 565765958 565773616 7659 4 0.0522261391826609 RFvsST 75955241 750500451 674545211 no 48.1329731227541 TraesCS3A01G322100 chr3A_565774572 chr3A 565774572 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 565765958 565773616 7659 4 0.0522261391826609 RFvsST 75955241 750500451 674545211 no 48.1329731227541 TraesCS3A01G322100 chr3A_565776004 chr3A 565776004 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 565765958 565773616 7659 4 0.0522261391826609 RFvsST 75955241 750500451 674545211 no 48.1329731227541 TraesCS3A01G322100 chr3A_565776622 chr3A 565776622 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 565765958 565773616 7659 4 0.0522261391826609 RFvsST 75955241 750500451 674545211 no 48.1329731227541 TraesCS3A01G322200 chr3A_565779325 chr3A 565779325 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 565774577 565779228 4652 2 0.0429922613929493 RFvsST 75955241 750500451 674545211 no 43.1732209716306 TraesCS3A01G322200 chr3A_565779099 chr3A 565779099 A A G G 4 missense_variant MODERATE transcript non_Triplet 565774577 565779228 4652 2 0.0429922613929493 RFvsST 75955241 750500451 674545211 no 43.1732209716306 TraesCS3A01G322300 chr3A_565783995 chr3A 565783995 T T C C 4 missense_variant MODERATE transcript non_Triplet 565783600 565788594 4995 1 0.02002002002002 RFvsST 75955241 750500451 674545211 no 10.1587849988836 TraesCS3A01G322500 chr3A_566122684 chr3A 566122684 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 566120627 566137840 17214 2 0.0116184500987568 RFvsST 75955241 750500451 674545211 no 6.70624058500529 TraesCS3A01G322500 chr3A_566122635 chr3A 566122635 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 566120627 566137840 17214 2 0.0116184500987568 RFvsST 75955241 750500451 674545211 no 6.70624058500529 TraesCS3A01G323000 chr3A_566894206 chr3A 566894206 G A G A 3 missense_variant MODERATE transcript unique_Triplet 566865051 566904793 39743 1 0.00251616636892031 RFvsST 75955241 750500451 674545211 no 36.9361467312279 TraesCS3A01G323100 chr3A_567557447 chr3A 567557447 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 567557352 567565543 8192 1 0.01220703125 RFvsST 75955241 750500451 674545211 no 370.275122793267 TraesCS3A01G323200 chr3A_567978962 chr3A 567978962 C T C T 3 synonymous_variant LOW transcript non_Triplet 567975833 567979656 3824 2 0.0523012552301255 RFvsST 75955241 750500451 674545211 no 100.259133149522 TraesCS3A01G323200 chr3A_567979509 chr3A 567979509 A G A G 3 synonymous_variant LOW transcript non_Triplet 567975833 567979656 3824 2 0.0523012552301255 RFvsST 75955241 750500451 674545211 no 100.259133149522 TraesCS3A01G323800 chr3A_568380877 chr3A 568380877 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 568380947 568383461 2515 1 0.0397614314115308 RFvsST 75955241 750500451 674545211 no 352.396234941325 TraesCS3A01G324800 chr3A_569417542 chr3A 569417542 C C G G 4 synonymous_variant LOW transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569422061 chr3A 569422061 A A C C 4 synonymous_variant LOW transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569417182 chr3A 569417182 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569417236 chr3A 569417236 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569423805 chr3A 569423805 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569423950 chr3A 569423950 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324800 chr3A_569417588 chr3A 569417588 G G A A 4 missense_variant MODERATE transcript unique_Triplet 569417308 569422498 5191 7 0.134848776728954 RFvsST 75955241 750500451 674545211 no 115.769481822109 TraesCS3A01G324900 chr3A_569429288 chr3A 569429288 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 569424309 569429101 4793 5 0.104318798247444 RFvsST 75955241 750500451 674545211 no 500.968556814157 TraesCS3A01G324900 chr3A_569425172 chr3A 569425172 G G A A 4 synonymous_variant LOW transcript unique_Triplet 569424309 569429101 4793 5 0.104318798247444 RFvsST 75955241 750500451 674545211 no 500.968556814157 TraesCS3A01G324900 chr3A_569427820 chr3A 569427820 G G A A 4 synonymous_variant LOW transcript unique_Triplet 569424309 569429101 4793 5 0.104318798247444 RFvsST 75955241 750500451 674545211 no 500.968556814157 TraesCS3A01G324900 chr3A_569425221 chr3A 569425221 G G C C 4 missense_variant MODERATE transcript unique_Triplet 569424309 569429101 4793 5 0.104318798247444 RFvsST 75955241 750500451 674545211 no 500.968556814157 TraesCS3A01G324900 chr3A_569424954 chr3A 569424954 T T A A 4 missense_variant MODERATE transcript unique_Triplet 569424309 569429101 4793 5 0.104318798247444 RFvsST 75955241 750500451 674545211 no 500.968556814157 TraesCS3A01G326200 chr3A_571407300 chr3A 571407300 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 571407259 571412241 4983 2 0.0401364639775236 RFvsST 75955241 750500451 674545211 no 160.341314723482 TraesCS3A01G326200 chr3A_571410397 chr3A 571410397 G G A A 4 synonymous_variant LOW transcript unique_Triplet 571407259 571412241 4983 2 0.0401364639775236 RFvsST 75955241 750500451 674545211 no 160.341314723482 TraesCS3A01G326700 chr3A_571922425 chr3A 571922425 G G A A 4 missense_variant MODERATE transcript unique_Triplet 571918822 571925571 6750 1 0.0148148148148148 RFvsST 75955241 750500451 674545211 no 207.232618638267 TraesCS3A01G328000 chr3A_573113008 chr3A 573113008 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 573112450 573113193 744 1 0.134408602150538 RFvsST 75955241 750500451 674545211 no 72.1168358178653 TraesCS3A01G328300 chr3A_573985537 chr3A 573985537 C A C A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 573976442 573985644 9203 1 0.0108660219493643 RFvsST 75955241 750500451 674545211 no 388.166647828901 TraesCS3A01G328800 chr3A_574256972 chr3A 574256972 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 574255203 574257538 2336 1 0.0428082191780822 RFvsST 75955241 750500451 674545211 no 463.707719599475 TraesCS3A01G329200 chr3A_574454082 chr3A 574454082 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 574451166 574453754 2589 3 0.115874855156431 RFvsST 75955241 750500451 674545211 no 168.680629530051 TraesCS3A01G329200 chr3A_574451159 chr3A 574451159 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 574451166 574453754 2589 3 0.115874855156431 RFvsST 75955241 750500451 674545211 no 168.680629530051 TraesCS3A01G329200 chr3A_574453198 chr3A 574453198 C A C A 3 synonymous_variant LOW transcript unique_Triplet 574451166 574453754 2589 3 0.115874855156431 RFvsST 75955241 750500451 674545211 no 168.680629530051 TraesCS3A01G329300 chr3A_574459200 chr3A 574459200 A C A C 3 synonymous_variant LOW transcript unique_Triplet 574458382 574459613 1232 2 0.162337662337662 RFvsST 75955241 750500451 674545211 no 478.108689084845 TraesCS3A01G329300 chr3A_574458386 chr3A 574458386 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 574458382 574459613 1232 2 0.162337662337662 RFvsST 75955241 750500451 674545211 no 478.108689084845 TraesCS3A01G330700 chr3A_575409079 chr3A 575409079 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 575409129 575411390 2262 1 0.0442086648983201 RFvsST 75955241 750500451 674545211 no 40.469635909574 TraesCS3A01G330900 chr3A_575493131 chr3A 575493131 C C T T 4 missense_variant MODERATE transcript unique_Triplet 575491090 575494090 3001 4 0.133288903698767 RFvsST 75955241 750500451 674545211 no 261.041856430945 TraesCS3A01G330900 chr3A_575493856 chr3A 575493856 A A C C 4 missense_variant MODERATE transcript unique_Triplet 575491090 575494090 3001 4 0.133288903698767 RFvsST 75955241 750500451 674545211 no 261.041856430945 TraesCS3A01G330900 chr3A_575493609 chr3A 575493609 T T C C 4 missense_variant MODERATE transcript unique_Triplet 575491090 575494090 3001 4 0.133288903698767 RFvsST 75955241 750500451 674545211 no 261.041856430945 TraesCS3A01G330900 chr3A_575493557 chr3A 575493557 T T C C 4 synonymous_variant LOW transcript unique_Triplet 575491090 575494090 3001 4 0.133288903698767 RFvsST 75955241 750500451 674545211 no 261.041856430945 TraesCS3A01G331000 chr3A_575499212 chr3A 575499212 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 575494512 575499362 4851 4 0.0824572253143682 RFvsST 75955241 750500451 674545211 no 84.9957345188284 TraesCS3A01G331000 chr3A_575496540 chr3A 575496540 G G T T 4 missense_variant MODERATE transcript unique_Triplet 575494512 575499362 4851 4 0.0824572253143682 RFvsST 75955241 750500451 674545211 no 84.9957345188284 TraesCS3A01G331000 chr3A_575496252 chr3A 575496252 C C A A 4 missense_variant MODERATE transcript unique_Triplet 575494512 575499362 4851 4 0.0824572253143682 RFvsST 75955241 750500451 674545211 no 84.9957345188284 TraesCS3A01G331000 chr3A_575497747 chr3A 575497747 G G C C 4 missense_variant MODERATE transcript unique_Triplet 575494512 575499362 4851 4 0.0824572253143682 RFvsST 75955241 750500451 674545211 no 84.9957345188284 TraesCS3A01G331400 chr3A_575949177 chr3A 575949177 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 575947929 575949002 1074 2 0.186219739292365 RFvsST 75955241 750500451 674545211 no 249.948975420023 TraesCS3A01G331400 chr3A_575947795 chr3A 575947795 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 575947929 575949002 1074 2 0.186219739292365 RFvsST 75955241 750500451 674545211 no 249.948975420023 TraesCS3A01G331500 chr3A_576208980 chr3A 576208980 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 576208955 576210078 1124 3 0.266903914590747 RFvsST 75955241 750500451 674545211 no 2288.58856515184 TraesCS3A01G331500 chr3A_576210552 chr3A 576210552 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 576208955 576210078 1124 3 0.266903914590747 RFvsST 75955241 750500451 674545211 no 2288.58856515184 TraesCS3A01G331500 chr3A_576209727 chr3A 576209727 A A G G 4 intron_variant MODIFIER transcript nonUnique_Triplet 576208955 576210078 1124 3 0.266903914590747 RFvsST 75955241 750500451 674545211 no 2288.58856515184 TraesCS3A01G331800 chr3A_576282757 chr3A 576282757 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 576281386 576283087 1702 3 0.176263219741481 RFvsST 75955241 750500451 674545211 no 188.455042973752 TraesCS3A01G331800 chr3A_576281369 chr3A 576281369 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 576281386 576283087 1702 3 0.176263219741481 RFvsST 75955241 750500451 674545211 no 188.455042973752 TraesCS3A01G331800 chr3A_576281392 chr3A 576281392 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 576281386 576283087 1702 3 0.176263219741481 RFvsST 75955241 750500451 674545211 no 188.455042973752 TraesCS3A01G332600 chr3A_577077846 chr3A 577077846 A A G G 4 missense_variant MODERATE transcript non_Triplet 577076715 577078321 1607 2 0.124455507156192 RFvsST 75955241 750500451 674545211 no 87.5716339986583 TraesCS3A01G332600 chr3A_577077470 chr3A 577077470 T T C C 4 missense_variant MODERATE transcript non_Triplet 577076715 577078321 1607 2 0.124455507156192 RFvsST 75955241 750500451 674545211 no 87.5716339986583 TraesCS3A01G332900 chr3A_577561998 chr3A 577561998 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 577559326 577562165 2840 1 0.0352112676056338 RFvsST 75955241 750500451 674545211 no 155.048116504726 TraesCS3A01G333100 chr3A_577575988 chr3A 577575988 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 577576022 577582937 6916 1 0.0144592249855408 RFvsST 75955241 750500451 674545211 no 92.0035779320455 TraesCS3A01G333300 chr3A_578874040 chr3A 578874040 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 578872992 578875539 2548 1 0.0392464678178964 RFvsST 75955241 750500451 674545211 no 771.033356388916 TraesCS3A01G333500 chr3A_578951563 chr3A 578951563 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 578951658 578953617 1960 2 0.102040816326531 RFvsST 75955241 750500451 674545211 no 44.4304197493265 TraesCS3A01G333500 chr3A_578952720 chr3A 578952720 T T C C 4 missense_variant MODERATE transcript unique_Triplet 578951658 578953617 1960 2 0.102040816326531 RFvsST 75955241 750500451 674545211 no 44.4304197493265 TraesCS3A01G334000 chr3A_579376415 chr3A 579376415 G G C C 4 synonymous_variant LOW transcript unique_Triplet 579373335 579376720 3386 2 0.0590667454223272 RFvsST 75955241 750500451 674545211 no 67.7966898823145 TraesCS3A01G334000 chr3A_579375884 chr3A 579375884 G G A A 4 missense_variant MODERATE transcript unique_Triplet 579373335 579376720 3386 2 0.0590667454223272 RFvsST 75955241 750500451 674545211 no 67.7966898823145 TraesCS3A01G334300 chr3A_580565241 chr3A 580565241 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 580560918 580564904 3987 3 0.0752445447705041 RFvsST 75955241 750500451 674545211 no 155.669717096755 TraesCS3A01G334300 chr3A_580563707 chr3A 580563707 G G A A 4 missense_variant MODERATE transcript non_Triplet 580560918 580564904 3987 3 0.0752445447705041 RFvsST 75955241 750500451 674545211 no 155.669717096755 TraesCS3A01G334300 chr3A_580565253 chr3A 580565253 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 580560918 580564904 3987 3 0.0752445447705041 RFvsST 75955241 750500451 674545211 no 155.669717096755 TraesCS3A01G334700 chr3A_581262657 chr3A 581262657 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 581260216 581262640 2425 1 0.0412371134020619 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G334800 chr3A_581266880 chr3A 581266880 C C A A 4 missense_variant MODERATE transcript unique_Triplet 581264129 581267045 2917 2 0.0685635927322592 RFvsST 75955241 750500451 674545211 no 235.696954115599 TraesCS3A01G334800 chr3A_581266871 chr3A 581266871 G G A A 4 missense_variant MODERATE transcript unique_Triplet 581264129 581267045 2917 2 0.0685635927322592 RFvsST 75955241 750500451 674545211 no 235.696954115599 TraesCS3A01G334900 chr3A_581275137 chr3A 581275137 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 581267285 581270293 3009 1 0.0332336324360253 RFvsST 75955241 750500451 674545211 no 24.2936238183711 TraesCS3A01G335400 chr3A_581602487 chr3A 581602487 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 581602956 581610005 7050 1 0.0141843971631206 RFvsST 75955241 750500451 674545211 no 13.6754391386688 TraesCS3A01G337800 chr3A_584746746 chr3A 584746746 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 584743912 584749284 5373 1 0.0186115764005211 RFvsST 75955241 750500451 674545211 no 311.645338316406 TraesCS3A01G341700 chr3A_588933030 chr3A 588933030 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 588933879 588936695 2817 1 0.035498757543486 RFvsST 75955241 750500451 674545211 no 31.43842493231 TraesCS3A01G342000 chr3A_589244291 chr3A 589244291 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 589243324 589254118 10795 1 0.00926354793886058 RFvsST 75955241 750500451 674545211 no 210.075552370061 TraesCS3A01G342200 chr3A_589385335 chr3A 589385335 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 589381502 589387262 5761 1 0.0173580975525082 RFvsST 75955241 750500451 674545211 no 90.1170401239337 TraesCS3A01G342500 chr3A_589537911 chr3A 589537911 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 589535662 589537717 2056 1 0.0486381322957198 RFvsST 75955241 750500451 674545211 no 423.229993589562 TraesCS3A01G342800 chr3A_589796391 chr3A 589796391 T T C C 4 synonymous_variant LOW transcript unique_Triplet 589795791 589807421 11631 2 0.0171954260166796 RFvsST 75955241 750500451 674545211 no 161.020499504481 TraesCS3A01G342800 chr3A_589796759 chr3A 589796759 C C T T 4 missense_variant MODERATE transcript unique_Triplet 589795791 589807421 11631 2 0.0171954260166796 RFvsST 75955241 750500451 674545211 no 161.020499504481 TraesCS3A01G343300 chr3A_591580100 chr3A 591580100 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591576788 591580134 3347 5 0.149387511204063 RFvsST 75955241 750500451 674545211 no 931.624329036005 TraesCS3A01G343300 chr3A_591580042 chr3A 591580042 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591576788 591580134 3347 5 0.149387511204063 RFvsST 75955241 750500451 674545211 no 931.624329036005 TraesCS3A01G343300 chr3A_591577383 chr3A 591577383 G G A A 4 missense_variant MODERATE transcript unique_Triplet 591576788 591580134 3347 5 0.149387511204063 RFvsST 75955241 750500451 674545211 no 931.624329036005 TraesCS3A01G343300 chr3A_591577144 chr3A 591577144 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591576788 591580134 3347 5 0.149387511204063 RFvsST 75955241 750500451 674545211 no 931.624329036005 TraesCS3A01G343300 chr3A_591577333 chr3A 591577333 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591576788 591580134 3347 5 0.149387511204063 RFvsST 75955241 750500451 674545211 no 931.624329036005 TraesCS3A01G344000 chr3A_593347217 chr3A 593347217 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 593342471 593347174 4704 2 0.0425170068027211 RFvsST 75955241 750500451 674545211 no 325.388769873233 TraesCS3A01G344000 chr3A_593347053 chr3A 593347053 G G A A 4 missense_variant MODERATE transcript non_Triplet 593342471 593347174 4704 2 0.0425170068027211 RFvsST 75955241 750500451 674545211 no 325.388769873233 TraesCS3A01G344100 chr3A_593353125 chr3A 593353125 T T C C 4 missense_variant MODERATE transcript unique_Triplet 593351177 593357075 5899 4 0.0678081030683167 RFvsST 75955241 750500451 674545211 no 30.3078812929801 TraesCS3A01G344100 chr3A_593355288 chr3A 593355288 G G A A 4 missense_variant MODERATE transcript unique_Triplet 593351177 593357075 5899 4 0.0678081030683167 RFvsST 75955241 750500451 674545211 no 30.3078812929801 TraesCS3A01G344100 chr3A_593352906 chr3A 593352906 T T C C 4 synonymous_variant LOW transcript unique_Triplet 593351177 593357075 5899 4 0.0678081030683167 RFvsST 75955241 750500451 674545211 no 30.3078812929801 TraesCS3A01G344100 chr3A_593353038 chr3A 593353038 G G C C 4 missense_variant MODERATE transcript unique_Triplet 593351177 593357075 5899 4 0.0678081030683167 RFvsST 75955241 750500451 674545211 no 30.3078812929801 TraesCS3A01G344400 chr3A_594000724 chr3A 594000724 T T G G 4 synonymous_variant LOW transcript unique_Triplet 594000190 594002889 2700 1 0.037037037037037 RFvsST 75955241 750500451 674545211 no 54.9271298127085 TraesCS3A01G344600 chr3A_594300902 chr3A 594300902 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 594300975 594301592 618 5 0.809061488673139 RFvsST 75955241 750500451 674545211 no 102.824734506281 TraesCS3A01G344600 chr3A_594301389 chr3A 594301389 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 594300975 594301592 618 5 0.809061488673139 RFvsST 75955241 750500451 674545211 no 102.824734506281 TraesCS3A01G344600 chr3A_594301644 chr3A 594301644 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 594300975 594301592 618 5 0.809061488673139 RFvsST 75955241 750500451 674545211 no 102.824734506281 TraesCS3A01G344600 chr3A_594301410 chr3A 594301410 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 594300975 594301592 618 5 0.809061488673139 RFvsST 75955241 750500451 674545211 no 102.824734506281 TraesCS3A01G344600 chr3A_594301770 chr3A 594301770 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 594300975 594301592 618 5 0.809061488673139 RFvsST 75955241 750500451 674545211 no 102.824734506281 TraesCS3A01G346400 chr3A_595933924 chr3A 595933924 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 595932633 595934499 1867 1 0.0535618639528656 RFvsST 75955241 750500451 674545211 no 91.3471413506576 TraesCS3A01G348500 chr3A_597234717 chr3A 597234717 C C A A 4 synonymous_variant LOW transcript unique_Triplet 597233733 597234827 1095 4 0.365296803652968 RFvsST 75955241 750500451 674545211 no 199.226201162309 TraesCS3A01G348500 chr3A_597233793 chr3A 597233793 T T C C 4 synonymous_variant LOW transcript unique_Triplet 597233733 597234827 1095 4 0.365296803652968 RFvsST 75955241 750500451 674545211 no 199.226201162309 TraesCS3A01G348500 chr3A_597234740 chr3A 597234740 C C T T 4 missense_variant MODERATE transcript unique_Triplet 597233733 597234827 1095 4 0.365296803652968 RFvsST 75955241 750500451 674545211 no 199.226201162309 TraesCS3A01G348500 chr3A_597234677 chr3A 597234677 T T G G 4 synonymous_variant LOW transcript unique_Triplet 597233733 597234827 1095 4 0.365296803652968 RFvsST 75955241 750500451 674545211 no 199.226201162309 TraesCS3A01G348600 chr3A_597267666 chr3A 597267666 C C T T 4 synonymous_variant LOW transcript unique_Triplet 597266896 597268555 1660 3 0.180722891566265 RFvsST 75955241 750500451 674545211 no 94.5639489931451 TraesCS3A01G348600 chr3A_597268440 chr3A 597268440 T T C C 4 missense_variant MODERATE transcript unique_Triplet 597266896 597268555 1660 3 0.180722891566265 RFvsST 75955241 750500451 674545211 no 94.5639489931451 TraesCS3A01G348600 chr3A_597266929 chr3A 597266929 C C T T 4 missense_variant MODERATE transcript unique_Triplet 597266896 597268555 1660 3 0.180722891566265 RFvsST 75955241 750500451 674545211 no 94.5639489931451 TraesCS3A01G348700 chr3A_597321821 chr3A 597321821 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 597323024 597324508 1485 2 0.134680134680135 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G348700 chr3A_597321909 chr3A 597321909 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 597323024 597324508 1485 2 0.134680134680135 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G349900 chr3A_598560116 chr3A 598560116 G G A A 4 missense_variant MODERATE transcript unique_Triplet 598560068 598563559 3492 1 0.0286368843069874 RFvsST 75955241 750500451 674545211 no 797.269902251698 TraesCS3A01G350700 chr3A_599379633 chr3A 599379633 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 599379851 599382755 2905 2 0.0688468158347676 RFvsST 75955241 750500451 674545211 no 268.624038343017 TraesCS3A01G350700 chr3A_599382677 chr3A 599382677 T T C C 4 synonymous_variant LOW transcript unique_Triplet 599379851 599382755 2905 2 0.0688468158347676 RFvsST 75955241 750500451 674545211 no 268.624038343017 TraesCS3A01G350900 chr3A_599415120 chr3A 599415120 C C T T 4 missense_variant MODERATE transcript unique_Triplet 599411944 599415397 3454 2 0.0579038795599305 RFvsST 75955241 750500451 674545211 no 67.2868478560481 TraesCS3A01G350900 chr3A_599412226 chr3A 599412226 G G C C 4 synonymous_variant LOW transcript unique_Triplet 599411944 599415397 3454 2 0.0579038795599305 RFvsST 75955241 750500451 674545211 no 67.2868478560481 TraesCS3A01G351200 chr3A_599795756 chr3A 599795756 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 599792047 599795867 3821 2 0.0523423187647213 RFvsST 75955241 750500451 674545211 no 190.097108001827 TraesCS3A01G351200 chr3A_599795802 chr3A 599795802 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 599792047 599795867 3821 2 0.0523423187647213 RFvsST 75955241 750500451 674545211 no 190.097108001827 TraesCS3A01G353700 chr3A_601399641 chr3A 601399641 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 601395012 601404418 9407 1 0.0106303816307005 RFvsST 75955241 750500451 674545211 no 206.0090031895 TraesCS3A01G353800 chr3A_601414157 chr3A 601414157 G G A A 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 601411261 601414162 2902 1 0.0344589937973811 RFvsST 75955241 750500451 674545211 no 347.072480372983 TraesCS3A01G354600 chr3A_602272447 chr3A 602272447 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 602272164 602272862 699 2 0.286123032904149 RFvsST 75955241 750500451 674545211 no 207.823803344109 TraesCS3A01G354600 chr3A_602272621 chr3A 602272621 C T C T 3 missense_variant MODERATE transcript unique_Triplet 602272164 602272862 699 2 0.286123032904149 RFvsST 75955241 750500451 674545211 no 207.823803344109 TraesCS3A01G354800 chr3A_602686411 chr3A 602686411 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 602686240 602689711 3472 2 0.0576036866359447 RFvsST 75955241 750500451 674545211 no 206.297235855266 TraesCS3A01G354800 chr3A_602686417 chr3A 602686417 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 602686240 602689711 3472 2 0.0576036866359447 RFvsST 75955241 750500451 674545211 no 206.297235855266 TraesCS3A01G355200 chr3A_602920180 chr3A 602920180 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 602917147 602920121 2975 3 0.100840336134454 RFvsST 75955241 750500451 674545211 no 293.692426817317 TraesCS3A01G355200 chr3A_602917404 chr3A 602917404 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 602917147 602920121 2975 3 0.100840336134454 RFvsST 75955241 750500451 674545211 no 293.692426817317 TraesCS3A01G355200 chr3A_602917529 chr3A 602917529 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 602917147 602920121 2975 3 0.100840336134454 RFvsST 75955241 750500451 674545211 no 293.692426817317 TraesCS3A01G355700 chr3A_603792117 chr3A 603792117 T C T C 3 synonymous_variant LOW transcript unique_Triplet 603790063 603792460 2398 2 0.0834028356964137 RFvsST 75955241 750500451 674545211 no 269.950196069091 TraesCS3A01G355700 chr3A_603790161 chr3A 603790161 C A C A 3 synonymous_variant LOW transcript unique_Triplet 603790063 603792460 2398 2 0.0834028356964137 RFvsST 75955241 750500451 674545211 no 269.950196069091 TraesCS3A01G355800 chr3A_603804047 chr3A 603804047 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 603795139 603799247 4109 1 0.0243368216110976 RFvsST 75955241 750500451 674545211 no 24.7184983302353 TraesCS3A01G355900 chr3A_603803433 chr3A 603803433 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 603803425 603804022 598 1 0.167224080267559 RFvsST 75955241 750500451 674545211 no 4.98194586051972 TraesCS3A01G356000 chr3A_603811672 chr3A 603811672 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 603807836 603811955 4120 2 0.0485436893203883 RFvsST 75955241 750500451 674545211 no 136.318588450512 TraesCS3A01G356000 chr3A_603810677 chr3A 603810677 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 603807836 603811955 4120 2 0.0485436893203883 RFvsST 75955241 750500451 674545211 no 136.318588450512 TraesCS3A01G357700 chr3A_605853377 chr3A 605853377 T C T C 3 intron_variant MODIFIER transcript nonUnique_Triplet 605850221 605855878 5658 1 0.0176740897843761 RFvsST 75955241 750500451 674545211 no 65.2200407147803 TraesCS3A01G360500 chr3A_608339919 chr3A 608339919 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 608340319 608341551 1233 1 0.08110300081103 RFvsST 75955241 750500451 674545211 no 3494.72386955134 TraesCS3A01G362800 chr3A_611170155 chr3A 611170155 T T C C 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 611165787 611170282 4496 1 0.0222419928825623 RFvsST 75955241 750500451 674545211 no 50.2500157899255 TraesCS3A01G363500 chr3A_611948519 chr3A 611948519 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 611950301 611952013 1713 1 0.0583771161704612 RFvsST 75955241 750500451 674545211 no 5.24257340945301 TraesCS3A01G363800 chr3A_611972085 chr3A 611972085 A G A G 3 synonymous_variant LOW transcript unique_Triplet 611972043 611974004 1962 1 0.0509683995922528 RFvsST 75955241 750500451 674545211 no 123.074323265979 TraesCS3A01G364200 chr3A_613167878 chr3A 613167878 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364200 chr3A_613169462 chr3A 613169462 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364200 chr3A_613167803 chr3A 613167803 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364200 chr3A_613170394 chr3A 613170394 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364200 chr3A_613171189 chr3A 613171189 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364200 chr3A_613170804 chr3A 613170804 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613167784 613169595 1812 6 0.33112582781457 RFvsST 75955241 750500451 674545211 no 27.3729509467082 TraesCS3A01G364600 chr3A_613391246 chr3A 613391246 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613391754 chr3A 613391754 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613393181 chr3A 613393181 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613393040 chr3A 613393040 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613393009 chr3A 613393009 T T A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613390890 chr3A 613390890 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G364600 chr3A_613393010 chr3A 613393010 T T A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 613391157 613392709 1553 7 0.450740502253702 RFvsST 75955241 750500451 674545211 no 184.424853243158 TraesCS3A01G367600 chr3A_616492185 chr3A 616492185 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 616492028 616493242 1215 1 0.0823045267489712 RFvsST 75955241 750500451 674545211 no 397.037749071198 TraesCS3A01G367900 chr3A_616725560 chr3A 616725560 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 616724939 616726420 1482 3 0.202429149797571 RFvsST 75955241 750500451 674545211 no 233.356532002401 TraesCS3A01G367900 chr3A_616725605 chr3A 616725605 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 616724939 616726420 1482 3 0.202429149797571 RFvsST 75955241 750500451 674545211 no 233.356532002401 TraesCS3A01G367900 chr3A_616726448 chr3A 616726448 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 616724939 616726420 1482 3 0.202429149797571 RFvsST 75955241 750500451 674545211 no 233.356532002401 TraesCS3A01G368600 chr3A_617532919 chr3A 617532919 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 617532500 617534038 1539 3 0.194931773879142 RFvsST 75955241 750500451 674545211 no 2199.61405859245 TraesCS3A01G368600 chr3A_617532686 chr3A 617532686 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 617532500 617534038 1539 3 0.194931773879142 RFvsST 75955241 750500451 674545211 no 2199.61405859245 TraesCS3A01G368600 chr3A_617534708 chr3A 617534708 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 617532500 617534038 1539 3 0.194931773879142 RFvsST 75955241 750500451 674545211 no 2199.61405859245 TraesCS3A01G369200 chr3A_620221423 chr3A 620221423 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 620216290 620221755 5466 1 0.0182949140139041 RFvsST 75955241 750500451 674545211 no 128.162034988092 TraesCS3A01G369300 chr3A_620475573 chr3A 620475573 T T C C 4 missense_variant MODERATE transcript unique_Triplet 620469742 620480265 10524 1 0.00950209045990118 RFvsST 75955241 750500451 674545211 no 11.5367388588063 TraesCS3A01G369500 chr3A_620581470 chr3A 620581470 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 620584974 620585459 486 1 0.205761316872428 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G370000 chr3A_620768129 chr3A 620768129 T T C C 4 missense_variant MODERATE transcript unique_Triplet 620762353 620771825 9473 1 0.0105563179562968 RFvsST 75955241 750500451 674545211 no 149.528858653649 TraesCS3A01G370700 chr3A_621224512 chr3A 621224512 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 621221628 621225129 3502 1 0.0285551113649343 RFvsST 75955241 750500451 674545211 no 28.0536743279416 TraesCS3A01G373500 chr3A_623533041 chr3A 623533041 A G A G 3 synonymous_variant LOW transcript unique_Triplet 623530977 623533436 2460 1 0.040650406504065 RFvsST 75955241 750500451 674545211 no 64.6363688838924 TraesCS3A01G373800 chr3A_623610671 chr3A 623610671 C C T T 4 synonymous_variant LOW transcript non_Triplet 623610042 623610962 921 1 0.1085776330076 RFvsST 75955241 750500451 674545211 no 453.126249206324 TraesCS3A01G374500 chr3A_623995528 chr3A 623995528 A A G G 4 missense_variant MODERATE transcript non_Triplet 623994859 623995805 947 1 0.105596620908131 RFvsST 75955241 750500451 674545211 no 271.994869319106 TraesCS3A01G378600 chr3A_627964700 chr3A 627964700 C C T T 4 missense_variant MODERATE transcript unique_Triplet 627961369 627965614 4246 5 0.117757889778615 RFvsST 75955241 750500451 674545211 no 3.38722246836452 TraesCS3A01G378600 chr3A_627965553 chr3A 627965553 A A G G 4 missense_variant MODERATE transcript unique_Triplet 627961369 627965614 4246 5 0.117757889778615 RFvsST 75955241 750500451 674545211 no 3.38722246836452 TraesCS3A01G378600 chr3A_627965348 chr3A 627965348 G G A A 4 missense_variant MODERATE transcript unique_Triplet 627961369 627965614 4246 5 0.117757889778615 RFvsST 75955241 750500451 674545211 no 3.38722246836452 TraesCS3A01G378600 chr3A_627965347 chr3A 627965347 T T C C 4 missense_variant MODERATE transcript unique_Triplet 627961369 627965614 4246 5 0.117757889778615 RFvsST 75955241 750500451 674545211 no 3.38722246836452 TraesCS3A01G378600 chr3A_627965711 chr3A 627965711 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 627961369 627965614 4246 5 0.117757889778615 RFvsST 75955241 750500451 674545211 no 3.38722246836452 TraesCS3A01G379000 chr3A_628302136 chr3A 628302136 A A C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 628302144 628304742 2599 1 0.0384763370527126 RFvsST 75955241 750500451 674545211 no 130.246954918961 TraesCS3A01G379300 chr3A_629051661 chr3A 629051661 T T C C 4 synonymous_variant LOW transcript non_Triplet 629051178 629056435 5258 1 0.0190186382655002 RFvsST 75955241 750500451 674545211 no 11.9202569104314 TraesCS3A01G383600 chr3A_633055068 chr3A 633055068 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 633051555 633055364 3810 2 0.05249343832021 RFvsST 75955241 750500451 674545211 no 74.2200872825547 TraesCS3A01G383600 chr3A_633053682 chr3A 633053682 A A G G 4 missense_variant MODERATE transcript unique_Triplet 633051555 633055364 3810 2 0.05249343832021 RFvsST 75955241 750500451 674545211 no 74.2200872825547 TraesCS3A01G383700 chr3A_633056351 chr3A 633056351 T T C C 4 synonymous_variant LOW transcript unique_Triplet 633056279 633064596 8318 5 0.0601106035104592 RFvsST 75955241 750500451 674545211 no 202.650219781112 TraesCS3A01G383700 chr3A_633058214 chr3A 633058214 C C T T 4 missense_variant MODERATE transcript unique_Triplet 633056279 633064596 8318 5 0.0601106035104592 RFvsST 75955241 750500451 674545211 no 202.650219781112 TraesCS3A01G383700 chr3A_633058070 chr3A 633058070 C C T T 4 missense_variant MODERATE transcript unique_Triplet 633056279 633064596 8318 5 0.0601106035104592 RFvsST 75955241 750500451 674545211 no 202.650219781112 TraesCS3A01G383700 chr3A_633057531 chr3A 633057531 A A G G 4 synonymous_variant LOW transcript unique_Triplet 633056279 633064596 8318 5 0.0601106035104592 RFvsST 75955241 750500451 674545211 no 202.650219781112 TraesCS3A01G383700 chr3A_633058149 chr3A 633058149 C C T T 4 synonymous_variant LOW transcript unique_Triplet 633056279 633064596 8318 5 0.0601106035104592 RFvsST 75955241 750500451 674545211 no 202.650219781112 TraesCS3A01G384200 chr3A_633849431 chr3A 633849431 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 633847887 633857762 9876 3 0.0303766707168894 RFvsST 75955241 750500451 674545211 no 296.157264117601 TraesCS3A01G384200 chr3A_633857536 chr3A 633857536 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 633847887 633857762 9876 3 0.0303766707168894 RFvsST 75955241 750500451 674545211 no 296.157264117601 TraesCS3A01G384200 chr3A_633857612 chr3A 633857612 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 633847887 633857762 9876 3 0.0303766707168894 RFvsST 75955241 750500451 674545211 no 296.157264117601 TraesCS3A01G385600 chr3A_635148508 chr3A 635148508 G G T T 4 synonymous_variant LOW transcript unique_Triplet 635148494 635151967 3474 5 0.143926309729419 RFvsST 75955241 750500451 674545211 no 971.138443657831 TraesCS3A01G385600 chr3A_635152202 chr3A 635152202 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 635148494 635151967 3474 5 0.143926309729419 RFvsST 75955241 750500451 674545211 no 971.138443657831 TraesCS3A01G385600 chr3A_635148511 chr3A 635148511 G G A A 4 synonymous_variant LOW transcript unique_Triplet 635148494 635151967 3474 5 0.143926309729419 RFvsST 75955241 750500451 674545211 no 971.138443657831 TraesCS3A01G385600 chr3A_635148609 chr3A 635148609 C C G G 4 missense_variant MODERATE transcript unique_Triplet 635148494 635151967 3474 5 0.143926309729419 RFvsST 75955241 750500451 674545211 no 971.138443657831 TraesCS3A01G385600 chr3A_635148646 chr3A 635148646 C C T T 4 synonymous_variant LOW transcript unique_Triplet 635148494 635151967 3474 5 0.143926309729419 RFvsST 75955241 750500451 674545211 no 971.138443657831 TraesCS3A01G390000 chr3A_638292353 chr3A 638292353 G A G A 3 missense_variant MODERATE transcript unique_Triplet 638291739 638293134 1396 5 0.358166189111748 RFvsST 75955241 750500451 674545211 no 303.446388273729 TraesCS3A01G390000 chr3A_638292888 chr3A 638292888 T C T C 3 synonymous_variant LOW transcript unique_Triplet 638291739 638293134 1396 5 0.358166189111748 RFvsST 75955241 750500451 674545211 no 303.446388273729 TraesCS3A01G390000 chr3A_638292687 chr3A 638292687 A G A G 3 synonymous_variant LOW transcript unique_Triplet 638291739 638293134 1396 5 0.358166189111748 RFvsST 75955241 750500451 674545211 no 303.446388273729 TraesCS3A01G390000 chr3A_638292988 chr3A 638292988 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 638291739 638293134 1396 5 0.358166189111748 RFvsST 75955241 750500451 674545211 no 303.446388273729 TraesCS3A01G390000 chr3A_638292500 chr3A 638292500 T C T C 3 missense_variant MODERATE transcript unique_Triplet 638291739 638293134 1396 5 0.358166189111748 RFvsST 75955241 750500451 674545211 no 303.446388273729 TraesCS3A01G390200 chr3A_638334282 chr3A 638334282 T C T C 3 synonymous_variant LOW transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638334696 chr3A 638334696 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638334040 chr3A 638334040 A G A G 3 missense_variant MODERATE transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638335842 chr3A 638335842 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638334308 chr3A 638334308 A G A G 3 missense_variant MODERATE transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638334786 chr3A 638334786 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390200 chr3A_638334382 chr3A 638334382 A G A G 3 missense_variant MODERATE transcript unique_Triplet 638333200 638334611 1412 7 0.495750708215297 RFvsST 75955241 750500451 674545211 no 287.169801771828 TraesCS3A01G390700 chr3A_638927310 chr3A 638927310 A A G G 4 synonymous_variant LOW transcript unique_Triplet 638926621 638928483 1863 1 0.0536768652710682 RFvsST 75955241 750500451 674545211 no 205.617136103966 TraesCS3A01G390800 chr3A_638983048 chr3A 638983048 T T C C 4 synonymous_variant LOW transcript unique_Triplet 638978547 638983186 4640 2 0.0431034482758621 RFvsST 75955241 750500451 674545211 no 82.1469484481249 TraesCS3A01G390800 chr3A_638982274 chr3A 638982274 G G A A 4 synonymous_variant LOW transcript unique_Triplet 638978547 638983186 4640 2 0.0431034482758621 RFvsST 75955241 750500451 674545211 no 82.1469484481249 TraesCS3A01G390900 chr3A_638985435 chr3A 638985435 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G390900 chr3A_638988971 chr3A 638988971 G T G T 3 missense_variant MODERATE transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G390900 chr3A_638985358 chr3A 638985358 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G390900 chr3A_638986543 chr3A 638986543 G G C C 4 missense_variant MODERATE transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G390900 chr3A_638993292 chr3A 638993292 G G A A 4 missense_variant MODERATE transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G390900 chr3A_638993315 chr3A 638993315 C C T T 4 synonymous_variant LOW transcript unique_Triplet 638985439 638993411 7973 6 0.0752539821898909 RFvsST 75955241 750500451 674545211 no 45.2817648746937 TraesCS3A01G391000 chr3A_639024949 chr3A 639024949 T T C C 4 synonymous_variant LOW transcript unique_Triplet 639020449 639025066 4618 1 0.021654395842356 RFvsST 75955241 750500451 674545211 no 36.9683273483955 TraesCS3A01G392800 chr3A_640699403 chr3A 640699403 C C T T 4 missense_variant MODERATE transcript unique_Triplet 640679084 640702807 23724 2 0.00843028157140448 RFvsST 75955241 750500451 674545211 no 567.90046215352 TraesCS3A01G392800 chr3A_640699605 chr3A 640699605 G A G A 3 synonymous_variant LOW transcript unique_Triplet 640679084 640702807 23724 2 0.00843028157140448 RFvsST 75955241 750500451 674545211 no 567.90046215352 TraesCS3A01G395000 chr3A_642208797 chr3A 642208797 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 642208906 642212310 3405 1 0.0293685756240822 RFvsST 75955241 750500451 674545211 no 135.919640644426 TraesCS3A01G397500 chr3A_644806849 chr3A 644806849 A C A C 3 missense_variant MODERATE transcript unique_Triplet 644804011 644810447 6437 2 0.0310703743980115 RFvsST 75955241 750500451 674545211 no 98.3911823718943 TraesCS3A01G397500 chr3A_644805393 chr3A 644805393 T G T G 3 synonymous_variant LOW transcript unique_Triplet 644804011 644810447 6437 2 0.0310703743980115 RFvsST 75955241 750500451 674545211 no 98.3911823718943 TraesCS3A01G401900 chr3A_647499711 chr3A 647499711 T T G G 4 missense_variant MODERATE transcript non_Triplet 647498018 647499739 1722 1 0.0580720092915215 RFvsST 75955241 750500451 674545211 no 34.8287886566946 TraesCS3A01G405300 chr3A_649851218 chr3A 649851218 C A C A 3 synonymous_variant LOW transcript non_Triplet 649851072 649854713 3642 1 0.0274574409665019 RFvsST 75955241 750500451 674545211 no 769.124405111654 TraesCS3A01G405900 chr3A_650029876 chr3A 650029876 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 650029603 650041774 12172 1 0.00821557673348669 RFvsST 75955241 750500451 674545211 no 205.252013117382 TraesCS3A01G407100 chr3A_652024317 chr3A 652024317 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 652017281 652019857 2577 1 0.0388048117966628 RFvsST 75955241 750500451 674545211 no 10.8183985857771 TraesCS3A01G412600 chr3A_656100721 chr3A 656100721 G T G T 3 missense_variant MODERATE transcript unique_Triplet 656099603 656105064 5462 3 0.0549249359209081 RFvsST 75955241 750500451 674545211 no 71.441306548325 TraesCS3A01G412600 chr3A_656101057 chr3A 656101057 C C T T 4 missense_variant MODERATE transcript unique_Triplet 656099603 656105064 5462 3 0.0549249359209081 RFvsST 75955241 750500451 674545211 no 71.441306548325 TraesCS3A01G412600 chr3A_656104843 chr3A 656104843 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 656099603 656105064 5462 3 0.0549249359209081 RFvsST 75955241 750500451 674545211 no 71.441306548325 TraesCS3A01G413600 chr3A_657230926 chr3A 657230926 T C T C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 657230872 657235082 4211 5 0.118736642127761 RFvsST 75955241 750500451 674545211 no 501.375354490592 TraesCS3A01G413600 chr3A_657234313 chr3A 657234313 G A G A 3 synonymous_variant LOW transcript unique_Triplet 657230872 657235082 4211 5 0.118736642127761 RFvsST 75955241 750500451 674545211 no 501.375354490592 TraesCS3A01G413600 chr3A_657234600 chr3A 657234600 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 657230872 657235082 4211 5 0.118736642127761 RFvsST 75955241 750500451 674545211 no 501.375354490592 TraesCS3A01G413600 chr3A_657234507 chr3A 657234507 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 657230872 657235082 4211 5 0.118736642127761 RFvsST 75955241 750500451 674545211 no 501.375354490592 TraesCS3A01G413600 chr3A_657233056 chr3A 657233056 C T C T 3 synonymous_variant LOW transcript unique_Triplet 657230872 657235082 4211 5 0.118736642127761 RFvsST 75955241 750500451 674545211 no 501.375354490592 TraesCS3A01G413700 chr3A_657272852 chr3A 657272852 C C T T 4 synonymous_variant LOW transcript non_Triplet 657271057 657274693 3637 4 0.109980753368161 RFvsST 75955241 750500451 674545211 no 590.935102014875 TraesCS3A01G413700 chr3A_657271161 chr3A 657271161 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 657271057 657274693 3637 4 0.109980753368161 RFvsST 75955241 750500451 674545211 no 590.935102014875 TraesCS3A01G413700 chr3A_657274514 chr3A 657274514 C G C G 3 synonymous_variant LOW transcript non_Triplet 657271057 657274693 3637 4 0.109980753368161 RFvsST 75955241 750500451 674545211 no 590.935102014875 TraesCS3A01G413700 chr3A_657272650 chr3A 657272650 A G A G 3 missense_variant MODERATE transcript non_Triplet 657271057 657274693 3637 4 0.109980753368161 RFvsST 75955241 750500451 674545211 no 590.935102014875 TraesCS3A01G413900 chr3A_657616350 chr3A 657616350 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657613505 657615730 2226 1 0.0449236298292902 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G414000 chr3A_657616589 chr3A 657616589 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 657616409 657620766 4358 1 0.0229463056447912 RFvsST 75955241 750500451 674545211 no 259.051032227388 TraesCS3A01G414100 chr3A_657928251 chr3A 657928251 C T C T 3 missense_variant MODERATE transcript unique_Triplet 657923783 657928255 4473 3 0.0670690811535882 RFvsST 75955241 750500451 674545211 no 321.441229529967 TraesCS3A01G414100 chr3A_657922482 chr3A 657922482 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657923783 657928255 4473 3 0.0670690811535882 RFvsST 75955241 750500451 674545211 no 321.441229529967 TraesCS3A01G414100 chr3A_657927336 chr3A 657927336 T A T A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 657923783 657928255 4473 3 0.0670690811535882 RFvsST 75955241 750500451 674545211 no 321.441229529967 TraesCS3A01G414200 chr3A_657928261 chr3A 657928261 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657928994 657935790 6797 1 0.014712373105782 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G414300 chr3A_657945112 chr3A 657945112 A G A G 3 missense_variant MODERATE transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657945506 chr3A 657945506 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657945425 chr3A 657945425 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657944594 chr3A 657944594 T C T C 3 synonymous_variant LOW transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657945808 chr3A 657945808 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657943195 chr3A 657943195 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414300 chr3A_657945304 chr3A 657945304 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 657943217 657945216 2000 7 0.35 RFvsST 75955241 750500451 674545211 no 333.950906353291 TraesCS3A01G414400 chr3A_657949885 chr3A 657949885 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657945937 657949641 3705 1 0.0269905533063428 RFvsST 75955241 750500451 674545211 no 4.03500861678813 TraesCS3A01G415900 chr3A_658842872 chr3A 658842872 C C T T 4 missense_variant MODERATE transcript unique_Triplet 658842588 658843544 957 1 0.104493207941484 RFvsST 75955241 750500451 674545211 no 113.770377250766 TraesCS3A01G416100 chr3A_658902861 chr3A 658902861 T T C C 4 synonymous_variant LOW transcript unique_Triplet 658901534 658904988 3455 1 0.0289435600578871 RFvsST 75955241 750500451 674545211 no 19.6851563134617 TraesCS3A01G416200 chr3A_658905380 chr3A 658905380 C C T T 4 missense_variant MODERATE transcript non_Triplet 658905125 658907061 1937 3 0.154878678368611 RFvsST 75955241 750500451 674545211 no 2712.9270007986 TraesCS3A01G416200 chr3A_658906849 chr3A 658906849 G G C C 4 synonymous_variant LOW transcript non_Triplet 658905125 658907061 1937 3 0.154878678368611 RFvsST 75955241 750500451 674545211 no 2712.9270007986 TraesCS3A01G416200 chr3A_658906089 chr3A 658906089 C C T T 4 missense_variant MODERATE transcript non_Triplet 658905125 658907061 1937 3 0.154878678368611 RFvsST 75955241 750500451 674545211 no 2712.9270007986 TraesCS3A01G416300 chr3A_658983644 chr3A 658983644 T T C C 4 missense_variant MODERATE transcript non_Triplet 658983005 658984906 1902 3 0.157728706624606 RFvsST 75955241 750500451 674545211 no 1653.32598084194 TraesCS3A01G416300 chr3A_658984564 chr3A 658984564 T T G G 4 missense_variant MODERATE transcript non_Triplet 658983005 658984906 1902 3 0.157728706624606 RFvsST 75955241 750500451 674545211 no 1653.32598084194 TraesCS3A01G416300 chr3A_658983317 chr3A 658983317 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 658983005 658984906 1902 3 0.157728706624606 RFvsST 75955241 750500451 674545211 no 1653.32598084194 TraesCS3A01G416800 chr3A_659040105 chr3A 659040105 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 659040057 659040569 513 2 0.389863547758285 RFvsST 75955241 750500451 674545211 no 1104.22338030789 TraesCS3A01G416800 chr3A_659040099 chr3A 659040099 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 659040057 659040569 513 2 0.389863547758285 RFvsST 75955241 750500451 674545211 no 1104.22338030789 TraesCS3A01G416900 chr3A_659159801 chr3A 659159801 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659159211 chr3A 659159211 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659159750 chr3A 659159750 T T G G 4 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659161916 chr3A 659161916 T C T C 3 synonymous_variant LOW transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659162515 chr3A 659162515 G A G A 3 missense_variant MODERATE transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659159749 chr3A 659159749 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659160711 chr3A 659160711 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G416900 chr3A_659160147 chr3A 659160147 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 659158475 659162998 4524 8 0.17683465959328 RFvsST 75955241 750500451 674545211 no 351.985115170125 TraesCS3A01G417000 chr3A_659395398 chr3A 659395398 A A G G 4 missense_variant MODERATE transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659393523 chr3A 659393523 C C T T 4 missense_variant MODERATE transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659393696 chr3A 659393696 C C T T 4 synonymous_variant LOW transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659396076 chr3A 659396076 T C T C 3 synonymous_variant LOW transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659400335 chr3A 659400335 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659397224 chr3A 659397224 C C T T 4 missense_variant MODERATE transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659398125 chr3A 659398125 G A G A 3 synonymous_variant LOW transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659400151 chr3A 659400151 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417000 chr3A_659396514 chr3A 659396514 C T C T 3 synonymous_variant LOW transcript non_Triplet 659392845 659398797 5953 9 0.151184276835209 RFvsST 75955241 750500451 674545211 no 117.931844290275 TraesCS3A01G417100 chr3A_659402143 chr3A 659402143 C C G G 4 synonymous_variant LOW transcript unique_Triplet 659400400 659404636 4237 3 0.0708048147274015 RFvsST 75955241 750500451 674545211 no 178.997701030389 TraesCS3A01G417100 chr3A_659402024 chr3A 659402024 T G T G 3 missense_variant MODERATE transcript unique_Triplet 659400400 659404636 4237 3 0.0708048147274015 RFvsST 75955241 750500451 674545211 no 178.997701030389 TraesCS3A01G417100 chr3A_659404640 chr3A 659404640 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 659400400 659404636 4237 3 0.0708048147274015 RFvsST 75955241 750500451 674545211 no 178.997701030389 TraesCS3A01G417200 chr3A_659528390 chr3A 659528390 A C A C 3 synonymous_variant LOW transcript unique_Triplet 659524853 659529402 4550 5 0.10989010989011 RFvsST 75955241 750500451 674545211 no 367.650589091498 TraesCS3A01G417200 chr3A_659527880 chr3A 659527880 G A G A 3 synonymous_variant LOW transcript unique_Triplet 659524853 659529402 4550 5 0.10989010989011 RFvsST 75955241 750500451 674545211 no 367.650589091498 TraesCS3A01G417200 chr3A_659528641 chr3A 659528641 C A C A 3 synonymous_variant LOW transcript unique_Triplet 659524853 659529402 4550 5 0.10989010989011 RFvsST 75955241 750500451 674545211 no 367.650589091498 TraesCS3A01G417200 chr3A_659528931 chr3A 659528931 C T C T 3 synonymous_variant LOW transcript unique_Triplet 659524853 659529402 4550 5 0.10989010989011 RFvsST 75955241 750500451 674545211 no 367.650589091498 TraesCS3A01G417200 chr3A_659529470 chr3A 659529470 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 659524853 659529402 4550 5 0.10989010989011 RFvsST 75955241 750500451 674545211 no 367.650589091498 TraesCS3A01G417600 chr3A_659940306 chr3A 659940306 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 659934231 659940164 5934 4 0.0674081563869228 RFvsST 75955241 750500451 674545211 no 196.582691733525 TraesCS3A01G417600 chr3A_659940209 chr3A 659940209 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 659934231 659940164 5934 4 0.0674081563869228 RFvsST 75955241 750500451 674545211 no 196.582691733525 TraesCS3A01G417600 chr3A_659935463 chr3A 659935463 A G A G 3 missense_variant MODERATE transcript unique_Triplet 659934231 659940164 5934 4 0.0674081563869228 RFvsST 75955241 750500451 674545211 no 196.582691733525 TraesCS3A01G417600 chr3A_659935874 chr3A 659935874 A C A C 3 missense_variant MODERATE transcript unique_Triplet 659934231 659940164 5934 4 0.0674081563869228 RFvsST 75955241 750500451 674545211 no 196.582691733525 TraesCS3A01G417900 chr3A_659978826 chr3A 659978826 C A C A 3 missense_variant MODERATE transcript unique_Triplet 659973613 659978858 5246 2 0.0381242851696531 RFvsST 75955241 750500451 674545211 no 55.0432971186201 TraesCS3A01G417900 chr3A_659974968 chr3A 659974968 G A G A 3 missense_variant MODERATE transcript unique_Triplet 659973613 659978858 5246 2 0.0381242851696531 RFvsST 75955241 750500451 674545211 no 55.0432971186201 TraesCS3A01G418300 chr3A_660237603 chr3A 660237603 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 660232039 660235579 3541 1 0.0282406099971759 RFvsST 75955241 750500451 674545211 no 1754.27945523928 TraesCS3A01G418400 chr3A_660235755 chr3A 660235755 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 660236949 660237795 847 1 0.118063754427391 RFvsST 75955241 750500451 674545211 no 6322.08774905546 TraesCS3A01G418600 chr3A_660269146 chr3A 660269146 G C G C 3 synonymous_variant LOW transcript unique_Triplet 660268826 660269469 644 3 0.46583850931677 RFvsST 75955241 750500451 674545211 no 84.7005785459197 TraesCS3A01G418600 chr3A_660269480 chr3A 660269480 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 660268826 660269469 644 3 0.46583850931677 RFvsST 75955241 750500451 674545211 no 84.7005785459197 TraesCS3A01G418600 chr3A_660269242 chr3A 660269242 G A G A 3 synonymous_variant LOW transcript unique_Triplet 660268826 660269469 644 3 0.46583850931677 RFvsST 75955241 750500451 674545211 no 84.7005785459197 TraesCS3A01G418900 chr3A_660509128 chr3A 660509128 A G A G 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 660509112 660516105 6994 1 0.0142979696883043 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G419100 chr3A_660872957 chr3A 660872957 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 660864796 660872768 7973 1 0.0125423303649818 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G419600 chr3A_661644638 chr3A 661644638 T G T G 3 missense_variant MODERATE transcript non_Triplet 661641122 661650489 9368 2 0.0213492741246798 RFvsST 75955241 750500451 674545211 no 351.752433122132 TraesCS3A01G419600 chr3A_661645338 chr3A 661645338 G A G A 3 synonymous_variant LOW transcript non_Triplet 661641122 661650489 9368 2 0.0213492741246798 RFvsST 75955241 750500451 674545211 no 351.752433122132 TraesCS3A01G419800 chr3A_661787303 chr3A 661787303 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 661787317 661787640 324 1 0.308641975308642 RFvsST 75955241 750500451 674545211 no 213.731665163651 TraesCS3A01G420800 chr3A_662394842 chr3A 662394842 C T C T 3 synonymous_variant LOW transcript unique_Triplet 662394770 662397810 3041 4 0.131535679052943 RFvsST 75955241 750500451 674545211 no 180.922978509267 TraesCS3A01G420800 chr3A_662397660 chr3A 662397660 C T C T 3 synonymous_variant LOW transcript unique_Triplet 662394770 662397810 3041 4 0.131535679052943 RFvsST 75955241 750500451 674545211 no 180.922978509267 TraesCS3A01G420800 chr3A_662394513 chr3A 662394513 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 662394770 662397810 3041 4 0.131535679052943 RFvsST 75955241 750500451 674545211 no 180.922978509267 TraesCS3A01G420800 chr3A_662394718 chr3A 662394718 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 662394770 662397810 3041 4 0.131535679052943 RFvsST 75955241 750500451 674545211 no 180.922978509267 TraesCS3A01G421400 chr3A_662930857 chr3A 662930857 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662931839 chr3A 662931839 C C T T 4 synonymous_variant LOW transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662932025 chr3A 662932025 C C T T 4 synonymous_variant LOW transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662933855 chr3A 662933855 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662933682 chr3A 662933682 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662933747 chr3A 662933747 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662933621 chr3A 662933621 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421400 chr3A_662933864 chr3A 662933864 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 662931519 662933524 2006 8 0.398803589232303 RFvsST 75955241 750500451 674545211 no 148.847000406712 TraesCS3A01G421500 chr3A_662941216 chr3A 662941216 C G C G 3 synonymous_variant LOW transcript unique_Triplet 662940226 662947205 6980 3 0.0429799426934097 RFvsST 75955241 750500451 674545211 no 272.158895352514 TraesCS3A01G421500 chr3A_662948701 chr3A 662948701 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 662940226 662947205 6980 3 0.0429799426934097 RFvsST 75955241 750500451 674545211 no 272.158895352514 TraesCS3A01G421500 chr3A_662941191 chr3A 662941191 T C T C 3 missense_variant MODERATE transcript unique_Triplet 662940226 662947205 6980 3 0.0429799426934097 RFvsST 75955241 750500451 674545211 no 272.158895352514 TraesCS3A01G421600 chr3A_662948789 chr3A 662948789 T C T C 3 missense_variant MODERATE transcript unique_Triplet 662948712 662953577 4866 2 0.041101520756268 RFvsST 75955241 750500451 674545211 no 85.4736274582158 TraesCS3A01G421600 chr3A_662949913 chr3A 662949913 A G A G 3 missense_variant MODERATE transcript unique_Triplet 662948712 662953577 4866 2 0.041101520756268 RFvsST 75955241 750500451 674545211 no 85.4736274582158 TraesCS3A01G422000 chr3A_663297611 chr3A 663297611 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 663292736 663297630 4895 2 0.0408580183861083 RFvsST 75955241 750500451 674545211 no 4.43251028777782 TraesCS3A01G422000 chr3A_663297662 chr3A 663297662 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 663292736 663297630 4895 2 0.0408580183861083 RFvsST 75955241 750500451 674545211 no 4.43251028777782 TraesCS3A01G422600 chr3A_663576079 chr3A 663576079 T T C C 4 synonymous_variant LOW transcript unique_Triplet 663574882 663576133 1252 3 0.23961661341853 RFvsST 75955241 750500451 674545211 no 66.845032300851 TraesCS3A01G422600 chr3A_663575980 chr3A 663575980 G G A A 4 synonymous_variant LOW transcript unique_Triplet 663574882 663576133 1252 3 0.23961661341853 RFvsST 75955241 750500451 674545211 no 66.845032300851 TraesCS3A01G422600 chr3A_663575001 chr3A 663575001 C C A A 4 synonymous_variant LOW transcript unique_Triplet 663574882 663576133 1252 3 0.23961661341853 RFvsST 75955241 750500451 674545211 no 66.845032300851 TraesCS3A01G422700 chr3A_663576244 chr3A 663576244 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 663577428 663577984 557 1 0.179533213644524 RFvsST 75955241 750500451 674545211 no 11.7728840583145 TraesCS3A01G422800 chr3A_663581259 chr3A 663581259 C T C T 3 missense_variant MODERATE transcript unique_Triplet 663579033 663599409 20377 4 0.0196299749717819 RFvsST 75955241 750500451 674545211 no 173.731495796164 TraesCS3A01G422800 chr3A_663580824 chr3A 663580824 C T C T 3 missense_variant MODERATE transcript unique_Triplet 663579033 663599409 20377 4 0.0196299749717819 RFvsST 75955241 750500451 674545211 no 173.731495796164 TraesCS3A01G422800 chr3A_663580883 chr3A 663580883 C C T T 4 synonymous_variant LOW transcript unique_Triplet 663579033 663599409 20377 4 0.0196299749717819 RFvsST 75955241 750500451 674545211 no 173.731495796164 TraesCS3A01G422800 chr3A_663584969 chr3A 663584969 A C A C 3 missense_variant MODERATE transcript unique_Triplet 663579033 663599409 20377 4 0.0196299749717819 RFvsST 75955241 750500451 674545211 no 173.731495796164 TraesCS3A01G423600 chr3A_665982310 chr3A 665982310 C T C T 3 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665982367 chr3A 665982367 C C G G 4 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665983441 chr3A 665983441 A G A G 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665981928 chr3A 665981928 C T C T 3 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665982406 chr3A 665982406 T C T C 3 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665983661 chr3A 665983661 T C T C 3 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423600 chr3A_665981914 chr3A 665981914 A C A C 3 missense_variant MODERATE transcript unique_Triplet 665981616 665987146 5531 7 0.126559392514916 RFvsST 75955241 750500451 674545211 no 137.399079868947 TraesCS3A01G423900 chr3A_666229435 chr3A 666229435 C C T T 4 synonymous_variant LOW transcript unique_Triplet 666229321 666232303 2983 1 0.0335232986925914 RFvsST 75955241 750500451 674545211 no 9.86852406748069 TraesCS3A01G424000 chr3A_666636888 chr3A 666636888 T G T G 3 intron_variant MODIFIER transcript unique_Triplet 666635687 666637113 1427 2 0.140154169586545 RFvsST 75955241 750500451 674545211 no 1290.36644391554 TraesCS3A01G424000 chr3A_666636381 chr3A 666636381 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 666635687 666637113 1427 2 0.140154169586545 RFvsST 75955241 750500451 674545211 no 1290.36644391554 TraesCS3A01G424800 chr3A_667353107 chr3A 667353107 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 667353188 667354812 1625 5 0.307692307692308 RFvsST 75955241 750500451 674545211 no 74.8367930640857 TraesCS3A01G424800 chr3A_667351905 chr3A 667351905 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 667353188 667354812 1625 5 0.307692307692308 RFvsST 75955241 750500451 674545211 no 74.8367930640857 TraesCS3A01G424800 chr3A_667351978 chr3A 667351978 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 667353188 667354812 1625 5 0.307692307692308 RFvsST 75955241 750500451 674545211 no 74.8367930640857 TraesCS3A01G424800 chr3A_667352853 chr3A 667352853 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 667353188 667354812 1625 5 0.307692307692308 RFvsST 75955241 750500451 674545211 no 74.8367930640857 TraesCS3A01G424800 chr3A_667352376 chr3A 667352376 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 667353188 667354812 1625 5 0.307692307692308 RFvsST 75955241 750500451 674545211 no 74.8367930640857 TraesCS3A01G426200 chr3A_669523835 chr3A 669523835 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 669523947 669525985 2039 3 0.147130946542423 RFvsST 75955241 750500451 674545211 no 41.5553532215206 TraesCS3A01G426200 chr3A_669524837 chr3A 669524837 C C A A 4 missense_variant MODERATE transcript non_Triplet 669523947 669525985 2039 3 0.147130946542423 RFvsST 75955241 750500451 674545211 no 41.5553532215206 TraesCS3A01G426200 chr3A_669526021 chr3A 669526021 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 669523947 669525985 2039 3 0.147130946542423 RFvsST 75955241 750500451 674545211 no 41.5553532215206 TraesCS3A01G426500 chr3A_669604444 chr3A 669604444 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 669601539 669604288 2750 1 0.0363636363636364 RFvsST 75955241 750500451 674545211 no 466.773615362978 TraesCS3A01G426600 chr3A_669620805 chr3A 669620805 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 669616368 669621032 4665 1 0.0214362272240086 RFvsST 75955241 750500451 674545211 no 123.391877780417 TraesCS3A01G426700 chr3A_669624341 chr3A 669624341 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 669619867 669624205 4339 5 0.115233924867481 RFvsST 75955241 750500451 674545211 no 298.686057856632 TraesCS3A01G426700 chr3A_669619723 chr3A 669619723 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 669619867 669624205 4339 5 0.115233924867481 RFvsST 75955241 750500451 674545211 no 298.686057856632 TraesCS3A01G426700 chr3A_669617887 chr3A 669617887 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 669619867 669624205 4339 5 0.115233924867481 RFvsST 75955241 750500451 674545211 no 298.686057856632 TraesCS3A01G426700 chr3A_669622574 chr3A 669622574 G G A A 4 missense_variant MODERATE transcript unique_Triplet 669619867 669624205 4339 5 0.115233924867481 RFvsST 75955241 750500451 674545211 no 298.686057856632 TraesCS3A01G426700 chr3A_669619713 chr3A 669619713 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 669619867 669624205 4339 5 0.115233924867481 RFvsST 75955241 750500451 674545211 no 298.686057856632 TraesCS3A01G427100 chr3A_670548734 chr3A 670548734 T T C C 4 synonymous_variant LOW transcript unique_Triplet 670548540 670551604 3065 5 0.163132137030995 RFvsST 75955241 750500451 674545211 no 260.014599459396 TraesCS3A01G427100 chr3A_670549019 chr3A 670549019 C C T T 4 synonymous_variant LOW transcript unique_Triplet 670548540 670551604 3065 5 0.163132137030995 RFvsST 75955241 750500451 674545211 no 260.014599459396 TraesCS3A01G427100 chr3A_670548707 chr3A 670548707 C C G G 4 synonymous_variant LOW transcript unique_Triplet 670548540 670551604 3065 5 0.163132137030995 RFvsST 75955241 750500451 674545211 no 260.014599459396 TraesCS3A01G427100 chr3A_670548713 chr3A 670548713 T T C C 4 synonymous_variant LOW transcript unique_Triplet 670548540 670551604 3065 5 0.163132137030995 RFvsST 75955241 750500451 674545211 no 260.014599459396 TraesCS3A01G427100 chr3A_670551472 chr3A 670551472 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 670548540 670551604 3065 5 0.163132137030995 RFvsST 75955241 750500451 674545211 no 260.014599459396 TraesCS3A01G427500 chr3A_671018747 chr3A 671018747 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 671016290 671018794 2505 1 0.0399201596806387 RFvsST 75955241 750500451 674545211 no 956.895174770628 TraesCS3A01G427900 chr3A_671632605 chr3A 671632605 G C G C 3 missense_variant MODERATE transcript unique_Triplet 671629691 671632765 3075 1 0.032520325203252 RFvsST 75955241 750500451 674545211 no 108.517980254218 TraesCS3A01G428900 chr3A_672087620 chr3A 672087620 A G A G 3 missense_variant MODERATE transcript unique_Triplet 672084629 672087764 3136 1 0.0318877551020408 RFvsST 75955241 750500451 674545211 no 125.833360030002 TraesCS3A01G429900 chr3A_672868407 chr3A 672868407 A T A T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 672868647 672870024 1378 1 0.0725689404934688 RFvsST 75955241 750500451 674545211 no 169.185424261927 TraesCS3A01G440000 chr3A_683072555 chr3A 683072555 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 683070742 683071611 870 3 0.344827586206897 RFvsST 75955241 750500451 674545211 no 55.3649572524859 TraesCS3A01G440000 chr3A_683071252 chr3A 683071252 G A G A 3 synonymous_variant LOW transcript unique_Triplet 683070742 683071611 870 3 0.344827586206897 RFvsST 75955241 750500451 674545211 no 55.3649572524859 TraesCS3A01G440000 chr3A_683071091 chr3A 683071091 C T C T 3 missense_variant MODERATE transcript unique_Triplet 683070742 683071611 870 3 0.344827586206897 RFvsST 75955241 750500451 674545211 no 55.3649572524859 TraesCS3A01G440100 chr3A_683194237 chr3A 683194237 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 683187184 683189502 2319 2 0.086244070720138 RFvsST 75955241 750500451 674545211 no 382.252267725663 TraesCS3A01G440100 chr3A_683187888 chr3A 683187888 T C T C 3 synonymous_variant LOW transcript non_Triplet 683187184 683189502 2319 2 0.086244070720138 RFvsST 75955241 750500451 674545211 no 382.252267725663 TraesCS3A01G440200 chr3A_683195193 chr3A 683195193 G A G A 3 synonymous_variant LOW transcript unique_Triplet 683194312 683195984 1673 4 0.239091452480574 RFvsST 75955241 750500451 674545211 no 274.009627158537 TraesCS3A01G440200 chr3A_683195772 chr3A 683195772 C G C G 3 synonymous_variant LOW transcript unique_Triplet 683194312 683195984 1673 4 0.239091452480574 RFvsST 75955241 750500451 674545211 no 274.009627158537 TraesCS3A01G440200 chr3A_683195482 chr3A 683195482 G A G A 3 missense_variant MODERATE transcript unique_Triplet 683194312 683195984 1673 4 0.239091452480574 RFvsST 75955241 750500451 674545211 no 274.009627158537 TraesCS3A01G440200 chr3A_683195520 chr3A 683195520 C G C G 3 missense_variant MODERATE transcript unique_Triplet 683194312 683195984 1673 4 0.239091452480574 RFvsST 75955241 750500451 674545211 no 274.009627158537 TraesCS3A01G440800 chr3A_683254155 chr3A 683254155 G C G C 3 missense_variant MODERATE transcript non_Triplet 683251724 683254365 2642 2 0.0757002271006813 RFvsST 75955241 750500451 674545211 no 180.828291277047 TraesCS3A01G440800 chr3A_683252406 chr3A 683252406 G A G A 3 missense_variant MODERATE transcript non_Triplet 683251724 683254365 2642 2 0.0757002271006813 RFvsST 75955241 750500451 674545211 no 180.828291277047 TraesCS3A01G441000 chr3A_683354207 chr3A 683354207 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 683357004 683361041 4038 1 0.0247647350173353 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G442200 chr3A_684297263 chr3A 684297263 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 684290165 684292940 2776 1 0.0360230547550432 RFvsST 75955241 750500451 674545211 no 4.51500937108952 TraesCS3A01G442300 chr3A_684297438 chr3A 684297438 C T C T 3 missense_variant MODERATE transcript unique_Triplet 684297428 684305059 7632 3 0.0393081761006289 RFvsST 75955241 750500451 674545211 no 24.9009770132775 TraesCS3A01G442300 chr3A_684299567 chr3A 684299567 C C T T 4 missense_variant MODERATE transcript unique_Triplet 684297428 684305059 7632 3 0.0393081761006289 RFvsST 75955241 750500451 674545211 no 24.9009770132775 TraesCS3A01G442300 chr3A_684303011 chr3A 684303011 G T G T 3 synonymous_variant LOW transcript unique_Triplet 684297428 684305059 7632 3 0.0393081761006289 RFvsST 75955241 750500451 674545211 no 24.9009770132775 TraesCS3A01G442900 chr3A_684594429 chr3A 684594429 T C T C 3 missense_variant MODERATE transcript non_Triplet 684592614 684595355 2742 2 0.0729394602479942 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G442900 chr3A_684593945 chr3A 684593945 T C T C 3 missense_variant MODERATE transcript non_Triplet 684592614 684595355 2742 2 0.0729394602479942 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G443200 chr3A_684751695 chr3A 684751695 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 684747803 684751675 3873 1 0.0258197779499096 RFvsST 75955241 750500451 674545211 no 14.7629282959086 TraesCS3A01G443600 chr3A_685120626 chr3A 685120626 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 685115414 685119123 3710 2 0.0539083557951483 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G443600 chr3A_685120083 chr3A 685120083 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 685115414 685119123 3710 2 0.0539083557951483 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G444000 chr3A_685357896 chr3A 685357896 A G A G 3 synonymous_variant LOW transcript non_Triplet 685356048 685360466 4419 5 0.113147770988912 RFvsST 75955241 750500451 674545211 no 868.692936175004 TraesCS3A01G444000 chr3A_685357955 chr3A 685357955 A C A C 3 missense_variant MODERATE transcript non_Triplet 685356048 685360466 4419 5 0.113147770988912 RFvsST 75955241 750500451 674545211 no 868.692936175004 TraesCS3A01G444000 chr3A_685360069 chr3A 685360069 T C T C 3 missense_variant MODERATE transcript non_Triplet 685356048 685360466 4419 5 0.113147770988912 RFvsST 75955241 750500451 674545211 no 868.692936175004 TraesCS3A01G444000 chr3A_685360270 chr3A 685360270 A G A G 3 missense_variant MODERATE transcript non_Triplet 685356048 685360466 4419 5 0.113147770988912 RFvsST 75955241 750500451 674545211 no 868.692936175004 TraesCS3A01G444000 chr3A_685357916 chr3A 685357916 G A G A 3 missense_variant MODERATE transcript non_Triplet 685356048 685360466 4419 5 0.113147770988912 RFvsST 75955241 750500451 674545211 no 868.692936175004 TraesCS3A01G446200 chr3A_686762464 chr3A 686762464 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 686762381 686768045 5665 1 0.0176522506619594 RFvsST 75955241 750500451 674545211 no 437.847790561581 TraesCS3A01G446300 chr3A_686775946 chr3A 686775946 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446300 chr3A_686785789 chr3A 686785789 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446300 chr3A_686780374 chr3A 686780374 T C T C 3 missense_variant MODERATE transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446300 chr3A_686783982 chr3A 686783982 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446300 chr3A_686775799 chr3A 686775799 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446300 chr3A_686784088 chr3A 686784088 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 686776114 686780918 4805 6 0.124869927159209 RFvsST 75955241 750500451 674545211 no 233.516525143776 TraesCS3A01G446400 chr3A_686785022 chr3A 686785022 T C T C 3 missense_variant MODERATE transcript unique_Triplet 686784178 686785548 1371 3 0.218818380743982 RFvsST 75955241 750500451 674545211 no 660.935917914313 TraesCS3A01G446400 chr3A_686785186 chr3A 686785186 A G A G 3 synonymous_variant LOW transcript unique_Triplet 686784178 686785548 1371 3 0.218818380743982 RFvsST 75955241 750500451 674545211 no 660.935917914313 TraesCS3A01G446400 chr3A_686787375 chr3A 686787375 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 686784178 686785548 1371 3 0.218818380743982 RFvsST 75955241 750500451 674545211 no 660.935917914313 TraesCS3A01G446500 chr3A_686808248 chr3A 686808248 G C G C 3 synonymous_variant LOW transcript unique_Triplet 686807264 686808532 1269 5 0.394011032308905 RFvsST 75955241 750500451 674545211 no 529.418711692953 TraesCS3A01G446500 chr3A_686808669 chr3A 686808669 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 686807264 686808532 1269 5 0.394011032308905 RFvsST 75955241 750500451 674545211 no 529.418711692953 TraesCS3A01G446500 chr3A_686808660 chr3A 686808660 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 686807264 686808532 1269 5 0.394011032308905 RFvsST 75955241 750500451 674545211 no 529.418711692953 TraesCS3A01G446500 chr3A_686808695 chr3A 686808695 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 686807264 686808532 1269 5 0.394011032308905 RFvsST 75955241 750500451 674545211 no 529.418711692953 TraesCS3A01G446500 chr3A_686808101 chr3A 686808101 G A G A 3 synonymous_variant LOW transcript unique_Triplet 686807264 686808532 1269 5 0.394011032308905 RFvsST 75955241 750500451 674545211 no 529.418711692953 TraesCS3A01G448800 chr3A_688617229 chr3A 688617229 G G A A 4 synonymous_variant LOW transcript unique_Triplet 688616017 688618792 2776 3 0.10806916426513 RFvsST 75955241 750500451 674545211 no 168.723679840488 TraesCS3A01G448800 chr3A_688617382 chr3A 688617382 G G A A 4 synonymous_variant LOW transcript unique_Triplet 688616017 688618792 2776 3 0.10806916426513 RFvsST 75955241 750500451 674545211 no 168.723679840488 TraesCS3A01G448800 chr3A_688617193 chr3A 688617193 C C T T 4 synonymous_variant LOW transcript unique_Triplet 688616017 688618792 2776 3 0.10806916426513 RFvsST 75955241 750500451 674545211 no 168.723679840488 TraesCS3A01G448900 chr3A_688673106 chr3A 688673106 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 688673378 688676759 3382 2 0.0591366055588409 RFvsST 75955241 750500451 674545211 no 309.452812493925 TraesCS3A01G448900 chr3A_688673058 chr3A 688673058 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 688673378 688676759 3382 2 0.0591366055588409 RFvsST 75955241 750500451 674545211 no 309.452812493925 TraesCS3A01G449100 chr3A_688680130 chr3A 688680130 G G A A 4 missense_variant MODERATE transcript unique_Triplet 688679355 688683435 4081 4 0.098015192354815 RFvsST 75955241 750500451 674545211 no 117.157850726768 TraesCS3A01G449100 chr3A_688679925 chr3A 688679925 A A G G 4 synonymous_variant LOW transcript unique_Triplet 688679355 688683435 4081 4 0.098015192354815 RFvsST 75955241 750500451 674545211 no 117.157850726768 TraesCS3A01G449100 chr3A_688679439 chr3A 688679439 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 688679355 688683435 4081 4 0.098015192354815 RFvsST 75955241 750500451 674545211 no 117.157850726768 TraesCS3A01G449100 chr3A_688681825 chr3A 688681825 A A G G 4 missense_variant MODERATE transcript unique_Triplet 688679355 688683435 4081 4 0.098015192354815 RFvsST 75955241 750500451 674545211 no 117.157850726768 TraesCS3A01G449200 chr3A_688689024 chr3A 688689024 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 688683576 688686556 2981 2 0.0670915800067092 RFvsST 75955241 750500451 674545211 no 23.5193372506402 TraesCS3A01G449200 chr3A_688684145 chr3A 688684145 A A G G 4 missense_variant MODERATE transcript unique_Triplet 688683576 688686556 2981 2 0.0670915800067092 RFvsST 75955241 750500451 674545211 no 23.5193372506402 TraesCS3A01G451000 chr3A_689498082 chr3A 689498082 C T C T 3 synonymous_variant LOW transcript unique_Triplet 689492939 689498103 5165 1 0.0193610842207164 RFvsST 75955241 750500451 674545211 no 146.153128018988 TraesCS3A01G454600 chr3A_692718816 chr3A 692718816 G G A A 4 synonymous_variant LOW transcript unique_Triplet 692711951 692720802 8852 1 0.0112968820605513 RFvsST 75955241 750500451 674545211 no 178.014355592342 TraesCS3A01G458200 chr3A_695512142 chr3A 695512142 A A G G 4 missense_variant MODERATE transcript non_Triplet 695510835 695513473 2639 1 0.0378931413414172 RFvsST 75955241 750500451 674545211 no 255.754179715467 TraesCS3A01G458300 chr3A_695513511 chr3A 695513511 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 695515312 695516463 1152 1 0.0868055555555556 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G459100 chr3A_695729696 chr3A 695729696 C C A A 4 missense_variant MODERATE transcript unique_Triplet 695729184 695732103 2920 2 0.0684931506849315 RFvsST 75955241 750500451 674545211 no 329.669965900103 TraesCS3A01G459100 chr3A_695729821 chr3A 695729821 C C T T 4 missense_variant MODERATE transcript unique_Triplet 695729184 695732103 2920 2 0.0684931506849315 RFvsST 75955241 750500451 674545211 no 329.669965900103 TraesCS3A01G459600 chr3A_696241723 chr3A 696241723 C T C T 3 synonymous_variant LOW transcript unique_Triplet 696238972 696243282 4311 2 0.0463929482718627 RFvsST 75955241 750500451 674545211 no 111.538900964082 TraesCS3A01G459600 chr3A_696239913 chr3A 696239913 T C T C 3 synonymous_variant LOW transcript unique_Triplet 696238972 696243282 4311 2 0.0463929482718627 RFvsST 75955241 750500451 674545211 no 111.538900964082 TraesCS3A01G461100 chr3A_697250671 chr3A 697250671 C C T T 4 missense_variant MODERATE transcript unique_Triplet 697250150 697252803 2654 4 0.150715900527506 RFvsST 75955241 750500451 674545211 no 192.940505561749 TraesCS3A01G461100 chr3A_697250703 chr3A 697250703 C C G G 4 missense_variant MODERATE transcript unique_Triplet 697250150 697252803 2654 4 0.150715900527506 RFvsST 75955241 750500451 674545211 no 192.940505561749 TraesCS3A01G461100 chr3A_697249973 chr3A 697249973 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 697250150 697252803 2654 4 0.150715900527506 RFvsST 75955241 750500451 674545211 no 192.940505561749 TraesCS3A01G461100 chr3A_697250101 chr3A 697250101 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 697250150 697252803 2654 4 0.150715900527506 RFvsST 75955241 750500451 674545211 no 192.940505561749 TraesCS3A01G462400 chr3A_697559471 chr3A 697559471 C A C A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 697559016 697561465 2450 1 0.0408163265306122 RFvsST 75955241 750500451 674545211 no 11.8509624888171 TraesCS3A01G463400 chr3A_697735993 chr3A 697735993 A G A G 3 missense_variant MODERATE transcript unique_Triplet 697735719 697739677 3959 3 0.07577671129073 RFvsST 75955241 750500451 674545211 no 498.740060336081 TraesCS3A01G463400 chr3A_697740326 chr3A 697740326 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 697735719 697739677 3959 3 0.07577671129073 RFvsST 75955241 750500451 674545211 no 498.740060336081 TraesCS3A01G463400 chr3A_697739655 chr3A 697739655 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 697735719 697739677 3959 3 0.07577671129073 RFvsST 75955241 750500451 674545211 no 498.740060336081 TraesCS3A01G463600 chr3A_697783831 chr3A 697783831 T C T C 3 synonymous_variant LOW transcript unique_Triplet 697782709 697785467 2759 1 0.0362450163102573 RFvsST 75955241 750500451 674545211 no 177.495824454568 TraesCS3A01G467100 chr3A_700592469 chr3A 700592469 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 700591417 700593625 2209 2 0.0905387052965143 RFvsST 75955241 750500451 674545211 no 90.1624296879089 TraesCS3A01G467100 chr3A_700591070 chr3A 700591070 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 700591417 700593625 2209 2 0.0905387052965143 RFvsST 75955241 750500451 674545211 no 90.1624296879089 TraesCS3A01G467400 chr3A_700737026 chr3A 700737026 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 700739165 700740418 1254 1 0.0797448165869219 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G467600 chr3A_700809028 chr3A 700809028 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 700809320 700813976 4657 5 0.107365256602963 RFvsST 75955241 750500451 674545211 no 227.682578975774 TraesCS3A01G467600 chr3A_700809113 chr3A 700809113 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 700809320 700813976 4657 5 0.107365256602963 RFvsST 75955241 750500451 674545211 no 227.682578975774 TraesCS3A01G467600 chr3A_700809110 chr3A 700809110 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 700809320 700813976 4657 5 0.107365256602963 RFvsST 75955241 750500451 674545211 no 227.682578975774 TraesCS3A01G467600 chr3A_700809347 chr3A 700809347 G T G T 3 synonymous_variant LOW transcript unique_Triplet 700809320 700813976 4657 5 0.107365256602963 RFvsST 75955241 750500451 674545211 no 227.682578975774 TraesCS3A01G467600 chr3A_700811389 chr3A 700811389 T C T C 3 missense_variant MODERATE transcript unique_Triplet 700809320 700813976 4657 5 0.107365256602963 RFvsST 75955241 750500451 674545211 no 227.682578975774 TraesCS3A01G470600 chr3A_702492681 chr3A 702492681 A C A C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 702490617 702492663 2047 1 0.0488519785051295 RFvsST 75955241 750500451 674545211 no 196.352118409642 TraesCS3A01G476100 chr3A_707465633 chr3A 707465633 A G A G 3 missense_variant MODERATE transcript non_Triplet 707465127 707465946 820 4 0.48780487804878 RFvsST 75955241 750500451 674545211 no 15.4778805358609 TraesCS3A01G476100 chr3A_707466033 chr3A 707466033 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 707465127 707465946 820 4 0.48780487804878 RFvsST 75955241 750500451 674545211 no 15.4778805358609 TraesCS3A01G476100 chr3A_707466060 chr3A 707466060 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 707465127 707465946 820 4 0.48780487804878 RFvsST 75955241 750500451 674545211 no 15.4778805358609 TraesCS3A01G476100 chr3A_707465967 chr3A 707465967 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 707465127 707465946 820 4 0.48780487804878 RFvsST 75955241 750500451 674545211 no 15.4778805358609 TraesCS3A01G480200 chr3A_711260281 chr3A 711260281 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 711259760 711261011 1252 1 0.0798722044728434 RFvsST 75955241 750500451 674545211 no 173.324917666432 TraesCS3A01G480600 chr3A_711406866 chr3A 711406866 G G A A 4 missense_variant MODERATE transcript unique_Triplet 711402978 711407172 4195 2 0.0476758045292014 RFvsST 75955241 750500451 674545211 no 81.4091698924671 TraesCS3A01G480600 chr3A_711403999 chr3A 711403999 A A T T 4 missense_variant MODERATE transcript unique_Triplet 711402978 711407172 4195 2 0.0476758045292014 RFvsST 75955241 750500451 674545211 no 81.4091698924671 TraesCS3A01G480700 chr3A_711407916 chr3A 711407916 G G A A 4 synonymous_variant LOW transcript unique_Triplet 711407868 711408396 529 1 0.189035916824197 RFvsST 75955241 750500451 674545211 no 34.5199374568573 TraesCS3A01G490200 chr3A_717903314 chr3A 717903314 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 717901964 717902272 309 1 0.323624595469256 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G490300 chr3A_717903487 chr3A 717903487 A G A G 3 synonymous_variant LOW transcript unique_Triplet 717903400 717905664 2265 4 0.176600441501104 RFvsST 75955241 750500451 674545211 no 146.560177250405 TraesCS3A01G490300 chr3A_717905429 chr3A 717905429 G T G T 3 synonymous_variant LOW transcript unique_Triplet 717903400 717905664 2265 4 0.176600441501104 RFvsST 75955241 750500451 674545211 no 146.560177250405 TraesCS3A01G490300 chr3A_717905438 chr3A 717905438 G T G T 3 synonymous_variant LOW transcript unique_Triplet 717903400 717905664 2265 4 0.176600441501104 RFvsST 75955241 750500451 674545211 no 146.560177250405 TraesCS3A01G490300 chr3A_717903451 chr3A 717903451 T C T C 3 synonymous_variant LOW transcript unique_Triplet 717903400 717905664 2265 4 0.176600441501104 RFvsST 75955241 750500451 674545211 no 146.560177250405 TraesCS3A01G491000 chr3A_718371933 chr3A 718371933 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 718370830 718372096 1267 2 0.15785319652723 RFvsST 75955241 750500451 674545211 no 72.3556915842789 TraesCS3A01G491000 chr3A_718371840 chr3A 718371840 A G A G 3 synonymous_variant LOW transcript non_Triplet 718370830 718372096 1267 2 0.15785319652723 RFvsST 75955241 750500451 674545211 no 72.3556915842789 TraesCS3A01G491300 chr3A_718399269 chr3A 718399269 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 718399321 718401369 2049 2 0.0976085895558809 RFvsST 75955241 750500451 674545211 no 228.633538952828 TraesCS3A01G491300 chr3A_718401501 chr3A 718401501 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 718399321 718401369 2049 2 0.0976085895558809 RFvsST 75955241 750500451 674545211 no 228.633538952828 TraesCS3A01G492900 chr3A_719639198 chr3A 719639198 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719639312 chr3A 719639312 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719646042 chr3A 719646042 C C G G 4 synonymous_variant LOW transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719646180 chr3A 719646180 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719639332 chr3A 719639332 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719646078 chr3A 719646078 C C G G 4 synonymous_variant LOW transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719639410 chr3A 719639410 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G492900 chr3A_719639197 chr3A 719639197 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 719639694 719646116 6423 8 0.12455238984898 RFvsST 75955241 750500451 674545211 no 63.7819323050793 TraesCS3A01G493700 chr3A_719995250 chr3A 719995250 G G T T 4 synonymous_variant LOW transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719991636 chr3A 719991636 A A C C 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719991417 chr3A 719991417 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719991445 chr3A 719991445 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719996294 chr3A 719996294 C G C G 3 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719991799 chr3A 719991799 A A G G 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992158 chr3A 719992158 C T C T 3 synonymous_variant LOW transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992451 chr3A 719992451 C T C T 3 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992145 chr3A 719992145 C C G G 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992148 chr3A 719992148 G G A A 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719991612 chr3A 719991612 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992208 chr3A 719992208 A A G G 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992207 chr3A 719992207 C A C A 3 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493700 chr3A_719992529 chr3A 719992529 G G A A 4 missense_variant MODERATE transcript non_Triplet 719991629 719997385 5757 14 0.243182212958138 RFvsST 75955241 750500451 674545211 no 153.030127795797 TraesCS3A01G493900 chr3A_720222888 chr3A 720222888 G G C C 4 missense_variant MODERATE transcript unique_Triplet 720214469 720223039 8571 4 0.0466690001166725 RFvsST 75955241 750500451 674545211 no 35.0853485193799 TraesCS3A01G493900 chr3A_720222910 chr3A 720222910 G G A A 4 synonymous_variant LOW transcript unique_Triplet 720214469 720223039 8571 4 0.0466690001166725 RFvsST 75955241 750500451 674545211 no 35.0853485193799 TraesCS3A01G493900 chr3A_720222957 chr3A 720222957 G A G A 3 missense_variant MODERATE transcript unique_Triplet 720214469 720223039 8571 4 0.0466690001166725 RFvsST 75955241 750500451 674545211 no 35.0853485193799 TraesCS3A01G493900 chr3A_720222969 chr3A 720222969 A A G G 4 missense_variant MODERATE transcript unique_Triplet 720214469 720223039 8571 4 0.0466690001166725 RFvsST 75955241 750500451 674545211 no 35.0853485193799 TraesCS3A01G494000 chr3A_720223325 chr3A 720223325 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 720228117 720231126 3010 2 0.0664451827242525 RFvsST 75955241 750500451 674545211 no 3.33684918938288 TraesCS3A01G494000 chr3A_720223335 chr3A 720223335 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 720228117 720231126 3010 2 0.0664451827242525 RFvsST 75955241 750500451 674545211 no 3.33684918938288 TraesCS3A01G494400 chr3A_720435645 chr3A 720435645 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720437108 chr3A 720437108 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720436167 chr3A 720436167 G A G A 3 synonymous_variant LOW transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720436671 chr3A 720436671 G G C C 4 synonymous_variant LOW transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720436430 chr3A 720436430 C T C T 3 missense_variant MODERATE transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720435860 chr3A 720435860 C T C T 3 missense_variant MODERATE transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720436450 chr3A 720436450 A A G G 4 missense_variant MODERATE transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G494400 chr3A_720435996 chr3A 720435996 C C G G 4 synonymous_variant LOW transcript non_Triplet 720435679 720437067 1389 8 0.575953923686105 RFvsST 75955241 750500451 674545211 no 347.942870531695 TraesCS3A01G495300 chr3A_721349307 chr3A 721349307 A A G G 4 synonymous_variant LOW transcript non_Triplet 721344470 721350119 5650 1 0.0176991150442478 RFvsST 75955241 750500451 674545211 no 71.7622237788352 TraesCS3A01G495500 chr3A_721453406 chr3A 721453406 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 721448403 721452833 4431 3 0.0677048070412999 RFvsST 75955241 750500451 674545211 no 42.9134907257266 TraesCS3A01G495500 chr3A_721449692 chr3A 721449692 G G A A 4 missense_variant MODERATE transcript non_Triplet 721448403 721452833 4431 3 0.0677048070412999 RFvsST 75955241 750500451 674545211 no 42.9134907257266 TraesCS3A01G495500 chr3A_721448324 chr3A 721448324 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 721448403 721452833 4431 3 0.0677048070412999 RFvsST 75955241 750500451 674545211 no 42.9134907257266 TraesCS3A01G495800 chr3A_721583698 chr3A 721583698 C T C T 3 missense_variant MODERATE transcript unique_Triplet 721581893 721584058 2166 3 0.138504155124654 RFvsST 75955241 750500451 674545211 no 23.833173896935 TraesCS3A01G495800 chr3A_721583588 chr3A 721583588 G A G A 3 synonymous_variant LOW transcript unique_Triplet 721581893 721584058 2166 3 0.138504155124654 RFvsST 75955241 750500451 674545211 no 23.833173896935 TraesCS3A01G495800 chr3A_721584078 chr3A 721584078 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 721581893 721584058 2166 3 0.138504155124654 RFvsST 75955241 750500451 674545211 no 23.833173896935 TraesCS3A01G496300 chr3A_722207912 chr3A 722207912 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 722208105 722226027 17923 5 0.0278971154382637 RFvsST 75955241 750500451 674545211 no 270.643479205124 TraesCS3A01G496300 chr3A_722211395 chr3A 722211395 A A C C 4 missense_variant MODERATE transcript unique_Triplet 722208105 722226027 17923 5 0.0278971154382637 RFvsST 75955241 750500451 674545211 no 270.643479205124 TraesCS3A01G496300 chr3A_722208027 chr3A 722208027 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 722208105 722226027 17923 5 0.0278971154382637 RFvsST 75955241 750500451 674545211 no 270.643479205124 TraesCS3A01G496300 chr3A_722214948 chr3A 722214948 T T G G 4 missense_variant MODERATE transcript unique_Triplet 722208105 722226027 17923 5 0.0278971154382637 RFvsST 75955241 750500451 674545211 no 270.643479205124 TraesCS3A01G496300 chr3A_722207862 chr3A 722207862 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 722208105 722226027 17923 5 0.0278971154382637 RFvsST 75955241 750500451 674545211 no 270.643479205124 TraesCS3A01G498100 chr3A_724057014 chr3A 724057014 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 724043810 724052426 8617 4 0.046419867703377 RFvsST 75955241 750500451 674545211 no 10.3016109491696 TraesCS3A01G498100 chr3A_724057023 chr3A 724057023 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 724043810 724052426 8617 4 0.046419867703377 RFvsST 75955241 750500451 674545211 no 10.3016109491696 TraesCS3A01G498100 chr3A_724057090 chr3A 724057090 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 724043810 724052426 8617 4 0.046419867703377 RFvsST 75955241 750500451 674545211 no 10.3016109491696 TraesCS3A01G498100 chr3A_724057060 chr3A 724057060 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 724043810 724052426 8617 4 0.046419867703377 RFvsST 75955241 750500451 674545211 no 10.3016109491696 TraesCS3A01G498200 chr3A_724053876 chr3A 724053876 T T C C 4 synonymous_variant LOW transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498200 chr3A_724053888 chr3A 724053888 C C T T 4 synonymous_variant LOW transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498200 chr3A_724053097 chr3A 724053097 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498200 chr3A_724053093 chr3A 724053093 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498200 chr3A_724057487 chr3A 724057487 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498200 chr3A_724053020 chr3A 724053020 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 724053119 724057003 3885 6 0.154440154440154 RFvsST 75955241 750500451 674545211 no 395.156655057959 TraesCS3A01G498700 chr3A_724200935 chr3A 724200935 G G A A 4 splice_region_variant&stop_retained_variant LOW transcript non_Triplet 724199314 724200936 1623 4 0.246457178065311 RFvsST 75955241 750500451 674545211 no 1504.76530669419 TraesCS3A01G498700 chr3A_724199535 chr3A 724199535 G G C C 4 synonymous_variant LOW transcript non_Triplet 724199314 724200936 1623 4 0.246457178065311 RFvsST 75955241 750500451 674545211 no 1504.76530669419 TraesCS3A01G498700 chr3A_724201149 chr3A 724201149 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 724199314 724200936 1623 4 0.246457178065311 RFvsST 75955241 750500451 674545211 no 1504.76530669419 TraesCS3A01G498700 chr3A_724200645 chr3A 724200645 C C T T 4 synonymous_variant LOW transcript non_Triplet 724199314 724200936 1623 4 0.246457178065311 RFvsST 75955241 750500451 674545211 no 1504.76530669419 TraesCS3A01G499000 chr3A_724317711 chr3A 724317711 G G A A 4 synonymous_variant LOW transcript unique_Triplet 724314898 724320508 5611 1 0.017822135091784 RFvsST 75955241 750500451 674545211 no 53.4294901306778 TraesCS3A01G500200 chr3A_724742548 chr3A 724742548 T T C C 4 missense_variant MODERATE transcript non_Triplet 724741957 724745537 3581 3 0.0837754817090198 RFvsST 75955241 750500451 674545211 no 26.6482678245773 TraesCS3A01G500200 chr3A_724743199 chr3A 724743199 T T C C 4 missense_variant MODERATE transcript non_Triplet 724741957 724745537 3581 3 0.0837754817090198 RFvsST 75955241 750500451 674545211 no 26.6482678245773 TraesCS3A01G500200 chr3A_724744909 chr3A 724744909 G G A A 4 synonymous_variant LOW transcript non_Triplet 724741957 724745537 3581 3 0.0837754817090198 RFvsST 75955241 750500451 674545211 no 26.6482678245773 TraesCS3A01G502300 chr3A_725737994 chr3A 725737994 G G T T 4 missense_variant MODERATE transcript unique_Triplet 725737938 725739417 1480 2 0.135135135135135 RFvsST 75955241 750500451 674545211 no 422.922839954337 TraesCS3A01G502300 chr3A_725738144 chr3A 725738144 C C T T 4 missense_variant MODERATE transcript unique_Triplet 725737938 725739417 1480 2 0.135135135135135 RFvsST 75955241 750500451 674545211 no 422.922839954337 TraesCS3A01G503100 chr3A_726016722 chr3A 726016722 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726018423 chr3A 726018423 G G A A 4 missense_variant MODERATE transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726020275 chr3A 726020275 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726018258 chr3A 726018258 A A G G 4 missense_variant MODERATE transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726020012 chr3A 726020012 C C G G 4 synonymous_variant LOW transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726019651 chr3A 726019651 G G A A 4 missense_variant MODERATE transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726018053 chr3A 726018053 T T C C 4 synonymous_variant LOW transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726018245 chr3A 726018245 T T C C 4 synonymous_variant LOW transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726016737 chr3A 726016737 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503100 chr3A_726017426 chr3A 726017426 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 726017598 726020690 3093 10 0.323310701584222 RFvsST 75955241 750500451 674545211 no 185.792637869787 TraesCS3A01G503400 chr3A_726115023 chr3A 726115023 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 726115088 726118420 3333 1 0.03000300030003 RFvsST 75955241 750500451 674545211 no 8.10263376742084 TraesCS3A01G504700 chr3A_726740545 chr3A 726740545 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 726741106 726742866 1761 2 0.113571834185122 RFvsST 75955241 750500451 674545211 no 386.413844665225 TraesCS3A01G504700 chr3A_726740794 chr3A 726740794 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 726741106 726742866 1761 2 0.113571834185122 RFvsST 75955241 750500451 674545211 no 386.413844665225 TraesCS3A01G507200 chr3A_728321993 chr3A 728321993 C A C A 3 missense_variant MODERATE transcript non_Triplet 728320698 728322872 2175 2 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 136.705585208229 TraesCS3A01G507200 chr3A_728322627 chr3A 728322627 C A C A 3 missense_variant MODERATE transcript non_Triplet 728320698 728322872 2175 2 0.0919540229885057 RFvsST 75955241 750500451 674545211 no 136.705585208229 TraesCS3A01G508800 chr3A_729876972 chr3A 729876972 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 729873705 729876942 3238 1 0.0308832612723904 RFvsST 75955241 750500451 674545211 no 47.114849135828 TraesCS3A01G511700 chr3A_731088992 chr3A 731088992 G A G A 3 synonymous_variant LOW transcript non_Triplet 731083712 731089346 5635 3 0.0532386867790594 RFvsST 75955241 750500451 674545211 no 219.904843707008 TraesCS3A01G511700 chr3A_731088914 chr3A 731088914 A G A G 3 synonymous_variant LOW transcript non_Triplet 731083712 731089346 5635 3 0.0532386867790594 RFvsST 75955241 750500451 674545211 no 219.904843707008 TraesCS3A01G511700 chr3A_731089508 chr3A 731089508 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 731083712 731089346 5635 3 0.0532386867790594 RFvsST 75955241 750500451 674545211 no 219.904843707008 TraesCS3A01G512500 chr3A_732060126 chr3A 732060126 G C G C 3 missense_variant MODERATE transcript unique_Triplet 732058199 732061925 3727 2 0.0536624631070566 RFvsST 75955241 750500451 674545211 no 60.533667959612 TraesCS3A01G512500 chr3A_732059497 chr3A 732059497 A G A G 3 synonymous_variant LOW transcript unique_Triplet 732058199 732061925 3727 2 0.0536624631070566 RFvsST 75955241 750500451 674545211 no 60.533667959612 TraesCS3A01G513000 chr3A_732472694 chr3A 732472694 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 732474276 732475406 1131 1 0.0884173297966401 RFvsST 75955241 750500451 674545211 no 91.8462960375035 TraesCS3A01G516300 chr3A_733964747 chr3A 733964747 T G T G 3 missense_variant MODERATE transcript non_Triplet 733964319 733965035 717 2 0.278940027894003 RFvsST 75955241 750500451 674545211 no 209.488061820872 TraesCS3A01G516300 chr3A_733965007 chr3A 733965007 G A G A 3 missense_variant MODERATE transcript non_Triplet 733964319 733965035 717 2 0.278940027894003 RFvsST 75955241 750500451 674545211 no 209.488061820872 TraesCS3A01G516400 chr3A_733995625 chr3A 733995625 T C T C 3 synonymous_variant LOW transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516400 chr3A_733993712 chr3A 733993712 A G A G 3 missense_variant MODERATE transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516400 chr3A_733993759 chr3A 733993759 A T A T 3 missense_variant MODERATE transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516400 chr3A_733993464 chr3A 733993464 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516400 chr3A_733995397 chr3A 733995397 C A C A 3 missense_variant MODERATE transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516400 chr3A_733994320 chr3A 733994320 C T C T 3 synonymous_variant LOW transcript non_Triplet 733993467 734002454 8988 6 0.0667556742323097 RFvsST 75955241 750500451 674545211 no 427.147287351694 TraesCS3A01G516500 chr3A_734003894 chr3A 734003894 G C G C 3 missense_variant MODERATE transcript non_Triplet 734003522 734004201 680 1 0.147058823529412 RFvsST 75955241 750500451 674545211 no 325.934274315816 TraesCS3A01G516900 chr3A_734130553 chr3A 734130553 C G C G 3 missense_variant MODERATE transcript unique_Triplet 734128065 734131142 3078 2 0.0649772579597141 RFvsST 75955241 750500451 674545211 no 326.558093985413 TraesCS3A01G516900 chr3A_734130859 chr3A 734130859 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 734128065 734131142 3078 2 0.0649772579597141 RFvsST 75955241 750500451 674545211 no 326.558093985413 TraesCS3A01G517300 chr3A_734280406 chr3A 734280406 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 734280584 734282563 1980 1 0.0505050505050505 RFvsST 75955241 750500451 674545211 no 17.1025151527741 TraesCS3A01G517700 chr3A_734788185 chr3A 734788185 C T C T 3 synonymous_variant LOW transcript unique_Triplet 734783144 734790898 7755 5 0.0644745325596389 RFvsST 75955241 750500451 674545211 no 530.736174430328 TraesCS3A01G517700 chr3A_734790392 chr3A 734790392 T C T C 3 missense_variant MODERATE transcript unique_Triplet 734783144 734790898 7755 5 0.0644745325596389 RFvsST 75955241 750500451 674545211 no 530.736174430328 TraesCS3A01G517700 chr3A_734783726 chr3A 734783726 A G A G 3 synonymous_variant LOW transcript unique_Triplet 734783144 734790898 7755 5 0.0644745325596389 RFvsST 75955241 750500451 674545211 no 530.736174430328 TraesCS3A01G517700 chr3A_734790393 chr3A 734790393 G A G A 3 synonymous_variant LOW transcript unique_Triplet 734783144 734790898 7755 5 0.0644745325596389 RFvsST 75955241 750500451 674545211 no 530.736174430328 TraesCS3A01G517700 chr3A_734788622 chr3A 734788622 C T C T 3 missense_variant MODERATE transcript unique_Triplet 734783144 734790898 7755 5 0.0644745325596389 RFvsST 75955241 750500451 674545211 no 530.736174430328 TraesCS3A01G518600 chr3A_735894839 chr3A 735894839 C T C T 3 synonymous_variant LOW transcript non_Triplet 735893250 735897003 3754 1 0.026638252530634 RFvsST 75955241 750500451 674545211 no 79.94706149738 TraesCS3A01G521500 chr3A_738132615 chr3A 738132615 G C G C 3 missense_variant MODERATE transcript unique_Triplet 738129573 738132640 3068 3 0.0977835723598436 RFvsST 75955241 750500451 674545211 no 68.7230720542314 TraesCS3A01G521500 chr3A_738132677 chr3A 738132677 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 738129573 738132640 3068 3 0.0977835723598436 RFvsST 75955241 750500451 674545211 no 68.7230720542314 TraesCS3A01G521500 chr3A_738133914 chr3A 738133914 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 738129573 738132640 3068 3 0.0977835723598436 RFvsST 75955241 750500451 674545211 no 68.7230720542314 TraesCS3A01G523700 chr3A_739145103 chr3A 739145103 A A G G 4 missense_variant MODERATE transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739147183 chr3A 739147183 C C T T 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739146383 chr3A 739146383 G G A A 4 missense_variant MODERATE transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145111 chr3A 739145111 G G A A 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739144877 chr3A 739144877 C C T T 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739144961 chr3A 739144961 G G C C 4 missense_variant MODERATE transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145317 chr3A 739145317 G G A A 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145028 chr3A 739145028 G G A A 4 missense_variant MODERATE transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145329 chr3A 739145329 G G A A 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739147798 chr3A 739147798 C G C G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739146461 chr3A 739146461 C C G G 4 missense_variant MODERATE transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145117 chr3A 739145117 A A G G 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739144967 chr3A 739144967 G G A A 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G523700 chr3A_739145593 chr3A 739145593 T T C C 4 synonymous_variant LOW transcript non_Triplet 739143802 739147844 4043 14 0.346277516695523 RFvsST 75955241 750500451 674545211 no 618.43035135263 TraesCS3A01G524600 chr3A_739323830 chr3A 739323830 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 739322585 739323691 1107 2 0.1806684733514 RFvsST 75955241 750500451 674545211 no 72.8049689542277 TraesCS3A01G524600 chr3A_739323454 chr3A 739323454 G T G T 3 missense_variant MODERATE transcript unique_Triplet 739322585 739323691 1107 2 0.1806684733514 RFvsST 75955241 750500451 674545211 no 72.8049689542277 TraesCS3A01G524800 chr3A_739391757 chr3A 739391757 G T G T 3 missense_variant MODERATE transcript unique_Triplet 739389835 739397003 7169 4 0.0557957874180499 RFvsST 75955241 750500451 674545211 no 117.478757858839 TraesCS3A01G524800 chr3A_739393139 chr3A 739393139 C T C T 3 synonymous_variant LOW transcript unique_Triplet 739389835 739397003 7169 4 0.0557957874180499 RFvsST 75955241 750500451 674545211 no 117.478757858839 TraesCS3A01G524800 chr3A_739396965 chr3A 739396965 A G A G 3 missense_variant MODERATE transcript unique_Triplet 739389835 739397003 7169 4 0.0557957874180499 RFvsST 75955241 750500451 674545211 no 117.478757858839 TraesCS3A01G524800 chr3A_739395927 chr3A 739395927 C C A A 4 synonymous_variant LOW transcript unique_Triplet 739389835 739397003 7169 4 0.0557957874180499 RFvsST 75955241 750500451 674545211 no 117.478757858839 TraesCS3A01G524900 chr3A_739397035 chr3A 739397035 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 739399439 739400971 1533 1 0.0652315720808871 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G525000 chr3A_739515727 chr3A 739515727 T A T A 3 synonymous_variant LOW transcript unique_Triplet 739513831 739516969 3139 4 0.127429117553361 RFvsST 75955241 750500451 674545211 no 57.6166506306182 TraesCS3A01G525000 chr3A_739516602 chr3A 739516602 A A G G 4 missense_variant MODERATE transcript unique_Triplet 739513831 739516969 3139 4 0.127429117553361 RFvsST 75955241 750500451 674545211 no 57.6166506306182 TraesCS3A01G525000 chr3A_739514010 chr3A 739514010 C T C T 3 synonymous_variant LOW transcript unique_Triplet 739513831 739516969 3139 4 0.127429117553361 RFvsST 75955241 750500451 674545211 no 57.6166506306182 TraesCS3A01G525000 chr3A_739516384 chr3A 739516384 T C T C 3 missense_variant MODERATE transcript unique_Triplet 739513831 739516969 3139 4 0.127429117553361 RFvsST 75955241 750500451 674545211 no 57.6166506306182 TraesCS3A01G525100 chr3A_739518991 chr3A 739518991 C G C G 3 missense_variant MODERATE transcript unique_Triplet 739517347 739519127 1781 4 0.224592925322852 RFvsST 75955241 750500451 674545211 no 56.5233570332952 TraesCS3A01G525100 chr3A_739519042 chr3A 739519042 G A G A 3 missense_variant MODERATE transcript unique_Triplet 739517347 739519127 1781 4 0.224592925322852 RFvsST 75955241 750500451 674545211 no 56.5233570332952 TraesCS3A01G525100 chr3A_739517561 chr3A 739517561 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739517347 739519127 1781 4 0.224592925322852 RFvsST 75955241 750500451 674545211 no 56.5233570332952 TraesCS3A01G525100 chr3A_739517816 chr3A 739517816 G A G A 3 missense_variant MODERATE transcript unique_Triplet 739517347 739519127 1781 4 0.224592925322852 RFvsST 75955241 750500451 674545211 no 56.5233570332952 TraesCS3A01G525400 chr3A_739560400 chr3A 739560400 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 739557732 739559492 1761 1 0.056785917092561 RFvsST 75955241 750500451 674545211 no 19.7816975615478 TraesCS3A01G525600 chr3A_739566928 chr3A 739566928 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 739567699 739569253 1555 1 0.0643086816720257 RFvsST 75955241 750500451 674545211 no No_match TraesCS3A01G526000 chr3A_739737996 chr3A 739737996 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G526000 chr3A_739737894 chr3A 739737894 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G526000 chr3A_739737966 chr3A 739737966 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G526000 chr3A_739734219 chr3A 739734219 T T C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G526000 chr3A_739734944 chr3A 739734944 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G526000 chr3A_739737946 chr3A 739737946 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 739733996 739735037 1042 6 0.575815738963532 RFvsST 75955241 750500451 674545211 no 96.406726150917 TraesCS3A01G528800 chr3A_742614783 chr3A 742614783 G G A A 4 synonymous_variant LOW transcript unique_Triplet 742612010 742617089 5080 1 0.0196850393700787 RFvsST 75955241 750500451 674545211 no 2072.66259575494 TraesCS3A01G529300 chr3A_742876634 chr3A 742876634 C C A A 4 missense_variant MODERATE transcript non_Triplet 742874826 742877400 2575 5 0.194174757281553 RFvsST 75955241 750500451 674545211 no 212.823883852419 TraesCS3A01G529300 chr3A_742875742 chr3A 742875742 G G A A 4 missense_variant MODERATE transcript non_Triplet 742874826 742877400 2575 5 0.194174757281553 RFvsST 75955241 750500451 674545211 no 212.823883852419 TraesCS3A01G529300 chr3A_742876877 chr3A 742876877 C G C G 3 missense_variant MODERATE transcript non_Triplet 742874826 742877400 2575 5 0.194174757281553 RFvsST 75955241 750500451 674545211 no 212.823883852419 TraesCS3A01G529300 chr3A_742875709 chr3A 742875709 C C T T 4 missense_variant MODERATE transcript non_Triplet 742874826 742877400 2575 5 0.194174757281553 RFvsST 75955241 750500451 674545211 no 212.823883852419 TraesCS3A01G529300 chr3A_742876787 chr3A 742876787 G T G T 3 missense_variant MODERATE transcript non_Triplet 742874826 742877400 2575 5 0.194174757281553 RFvsST 75955241 750500451 674545211 no 212.823883852419 TraesCS3A01G530000 chr3A_743192470 chr3A 743192470 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743185187 743192755 7569 4 0.0528471396485665 RFvsST 75955241 750500451 674545211 no 141.170742068496 TraesCS3A01G530000 chr3A_743185318 chr3A 743185318 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743185187 743192755 7569 4 0.0528471396485665 RFvsST 75955241 750500451 674545211 no 141.170742068496 TraesCS3A01G530000 chr3A_743192503 chr3A 743192503 G A G A 3 synonymous_variant LOW transcript unique_Triplet 743185187 743192755 7569 4 0.0528471396485665 RFvsST 75955241 750500451 674545211 no 141.170742068496 TraesCS3A01G530000 chr3A_743185294 chr3A 743185294 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743185187 743192755 7569 4 0.0528471396485665 RFvsST 75955241 750500451 674545211 no 141.170742068496 TraesCS3A01G530200 chr3A_743379581 chr3A 743379581 A A G G 4 synonymous_variant LOW transcript non_Triplet 743377413 743380400 2988 4 0.133868808567604 RFvsST 75955241 750500451 674545211 no 82.1586408372096 TraesCS3A01G530200 chr3A_743379107 chr3A 743379107 A G A G 3 synonymous_variant LOW transcript non_Triplet 743377413 743380400 2988 4 0.133868808567604 RFvsST 75955241 750500451 674545211 no 82.1586408372096 TraesCS3A01G530200 chr3A_743379098 chr3A 743379098 T T C C 4 synonymous_variant LOW transcript non_Triplet 743377413 743380400 2988 4 0.133868808567604 RFvsST 75955241 750500451 674545211 no 82.1586408372096 TraesCS3A01G530200 chr3A_743379566 chr3A 743379566 G G C C 4 synonymous_variant LOW transcript non_Triplet 743377413 743380400 2988 4 0.133868808567604 RFvsST 75955241 750500451 674545211 no 82.1586408372096 TraesCS3A01G530400 chr3A_743675450 chr3A 743675450 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 743674093 743674290 198 1 0.505050505050505 RFvsST 75955241 750500451 674545211 no 155.497195778432 TraesCS3A01G530600 chr3A_743759772 chr3A 743759772 T T G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 743757588 743759954 2367 2 0.0844951415293621 RFvsST 75955241 750500451 674545211 no 99.7849466279134 TraesCS3A01G530600 chr3A_743757924 chr3A 743757924 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 743757588 743759954 2367 2 0.0844951415293621 RFvsST 75955241 750500451 674545211 no 99.7849466279134 TraesCS3A01G530700 chr3A_743874825 chr3A 743874825 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743872706 743874879 2174 2 0.0919963201471941 RFvsST 75955241 750500451 674545211 no 43.9298003120075 TraesCS3A01G530700 chr3A_743874424 chr3A 743874424 C C A A 4 missense_variant MODERATE transcript unique_Triplet 743872706 743874879 2174 2 0.0919963201471941 RFvsST 75955241 750500451 674545211 no 43.9298003120075 TraesCS3A01G531300 chr3A_744262932 chr3A 744262932 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 744266482 744267043 562 1 0.177935943060498 RFvsST 75955241 750500451 674545211 no 2390.2233609691 TraesCS3A01G531400 chr3A_744287038 chr3A 744287038 A T A T 3 intron_variant MODIFIER transcript non_Triplet 744286759 744287340 582 1 0.171821305841924 RFvsST 75955241 750500451 674545211 no 2426.01411586734 TraesCS3A01G531700 chr3A_744392603 chr3A 744392603 G A G A 3 synonymous_variant LOW transcript unique_Triplet 744391998 744392677 680 1 0.147058823529412 RFvsST 75955241 750500451 674545211 no 21.799249758599 TraesCS3A01G531800 chr3A_744434431 chr3A 744434431 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 744434476 744445665 11190 1 0.00893655049151028 RFvsST 75955241 750500451 674545211 no 84.9090959402794 TraesCS3A01G538100 chr3A_749344760 chr3A 749344760 C C T T 4 missense_variant MODERATE transcript unique_Triplet 749341348 749345247 3900 1 0.0256410256410256 RFvsST 75955241 750500451 674545211 no 168.520242945943 TraesCS3A01G538200 chr3A_749403682 chr3A 749403682 C C T T 4 synonymous_variant LOW transcript unique_Triplet 749402236 749407134 4899 1 0.0204123290467442 RFvsST 75955241 750500451 674545211 no 473.216080807023 TraesCS3B01G000200 chr3B_219352 chr3B 219352 C G C G 3 synonymous_variant LOW transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_221102 chr3B 221102 A G A G 3 synonymous_variant LOW transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_220704 chr3B 220704 C T C T 3 synonymous_variant LOW transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_222208 chr3B 222208 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_219562 chr3B 219562 C T C T 3 synonymous_variant LOW transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_222251 chr3B 222251 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000200 chr3B_219685 chr3B 219685 C G C G 3 synonymous_variant LOW transcript non_Triplet 218049 221886 3838 7 0.182386659718603 RFvsST 218049 829541507 829323459 no 2389.19891485835 TraesCS3B01G000700 chr3B_983592 chr3B 983592 T T A A 4 synonymous_variant LOW transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G000700 chr3B_986850 chr3B 986850 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G000700 chr3B_986546 chr3B 986546 C C T T 4 synonymous_variant LOW transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G000700 chr3B_985762 chr3B 985762 G G A A 4 synonymous_variant LOW transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G000700 chr3B_985828 chr3B 985828 C C T T 4 synonymous_variant LOW transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G000700 chr3B_986050 chr3B 986050 T C T C 3 synonymous_variant LOW transcript non_Triplet 981837 986675 4839 6 0.123992560446373 RFvsST 218049 829541507 829323459 no 965.111674707827 TraesCS3B01G001800 chr3B_1616856 chr3B 1616856 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 1613051 1613442 392 2 0.510204081632653 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G001800 chr3B_1616970 chr3B 1616970 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 1613051 1613442 392 2 0.510204081632653 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G003100 chr3B_2280622 chr3B 2280622 G A G A 3 missense_variant MODERATE transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2284391 chr3B 2284391 A A G G 4 missense_variant MODERATE transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2280347 chr3B 2280347 C C T T 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2280418 chr3B 2280418 T C T C 3 missense_variant MODERATE transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2280567 chr3B 2280567 C C G G 4 missense_variant MODERATE transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2280384 chr3B 2280384 G A G A 3 missense_variant MODERATE transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G003100 chr3B_2280470 chr3B 2280470 G G A A 4 synonymous_variant LOW transcript non_Triplet 2279508 2287705 8198 7 0.0853866796779702 RFvsST 218049 829541507 829323459 no 109.406206713538 TraesCS3B01G004200 chr3B_2487947 chr3B 2487947 C C T T 4 missense_variant MODERATE transcript unique_Triplet 2484603 2487991 3389 5 0.147536146355857 RFvsST 218049 829541507 829323459 no 931.683326456079 TraesCS3B01G004200 chr3B_2485753 chr3B 2485753 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 2484603 2487991 3389 5 0.147536146355857 RFvsST 218049 829541507 829323459 no 931.683326456079 TraesCS3B01G004200 chr3B_2484640 chr3B 2484640 C C T T 4 missense_variant MODERATE transcript unique_Triplet 2484603 2487991 3389 5 0.147536146355857 RFvsST 218049 829541507 829323459 no 931.683326456079 TraesCS3B01G004200 chr3B_2486097 chr3B 2486097 G T G T 3 missense_variant MODERATE transcript unique_Triplet 2484603 2487991 3389 5 0.147536146355857 RFvsST 218049 829541507 829323459 no 931.683326456079 TraesCS3B01G004200 chr3B_2484623 chr3B 2484623 A G A G 3 synonymous_variant LOW transcript unique_Triplet 2484603 2487991 3389 5 0.147536146355857 RFvsST 218049 829541507 829323459 no 931.683326456079 TraesCS3B01G004300 chr3B_2490676 chr3B 2490676 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2490084 chr3B 2490084 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491632 chr3B 2491632 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491333 chr3B 2491333 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2490842 chr3B 2490842 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2490529 chr3B 2490529 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491644 chr3B 2491644 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491657 chr3B 2491657 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2490700 chr3B 2490700 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491428 chr3B 2491428 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004300 chr3B_2491853 chr3B 2491853 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 2492292 2493392 1101 11 0.999091734786558 RFvsST 218049 829541507 829323459 no 67.9355749640517 TraesCS3B01G004600 chr3B_2512495 chr3B 2512495 G G A A 4 synonymous_variant LOW transcript non_Triplet 2511336 2514856 3521 1 0.0284010224368077 RFvsST 218049 829541507 829323459 no 1895.83581606075 TraesCS3B01G004700 chr3B_2519784 chr3B 2519784 G A G A 3 synonymous_variant LOW transcript non_Triplet 2516396 2520626 4231 3 0.0709052233514536 RFvsST 218049 829541507 829323459 no 4.42618535987695 TraesCS3B01G004700 chr3B_2518577 chr3B 2518577 T C T C 3 synonymous_variant LOW transcript non_Triplet 2516396 2520626 4231 3 0.0709052233514536 RFvsST 218049 829541507 829323459 no 4.42618535987695 TraesCS3B01G004700 chr3B_2519843 chr3B 2519843 G A G A 3 missense_variant MODERATE transcript non_Triplet 2516396 2520626 4231 3 0.0709052233514536 RFvsST 218049 829541507 829323459 no 4.42618535987695 TraesCS3B01G005800 chr3B_3225869 chr3B 3225869 T C T C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 3225719 3228853 3135 3 0.0956937799043062 RFvsST 218049 829541507 829323459 no 205.947508513759 TraesCS3B01G005800 chr3B_3228147 chr3B 3228147 A G A G 3 synonymous_variant LOW transcript non_Triplet 3225719 3228853 3135 3 0.0956937799043062 RFvsST 218049 829541507 829323459 no 205.947508513759 TraesCS3B01G005800 chr3B_3228129 chr3B 3228129 T C T C 3 synonymous_variant LOW transcript non_Triplet 3225719 3228853 3135 3 0.0956937799043062 RFvsST 218049 829541507 829323459 no 205.947508513759 TraesCS3B01G005900 chr3B_3240151 chr3B 3240151 G A G A 3 synonymous_variant LOW transcript unique_Triplet 3234393 3242718 8326 2 0.0240211386019697 RFvsST 218049 829541507 829323459 no 853.025752484533 TraesCS3B01G005900 chr3B_3240166 chr3B 3240166 T C T C 3 synonymous_variant LOW transcript unique_Triplet 3234393 3242718 8326 2 0.0240211386019697 RFvsST 218049 829541507 829323459 no 853.025752484533 TraesCS3B01G006200 chr3B_3277462 chr3B 3277462 T A T A 3 synonymous_variant LOW transcript non_Triplet 3274516 3281058 6543 1 0.0152835090936879 RFvsST 218049 829541507 829323459 no 3.83169124201914 TraesCS3B01G006300 chr3B_3307911 chr3B 3307911 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 3307271 3308513 1243 1 0.080450522928399 RFvsST 218049 829541507 829323459 no 318.662685170347 TraesCS3B01G007200 chr3B_3666997 chr3B 3666997 G G C C 4 synonymous_variant LOW transcript non_Triplet 3665457 3667325 1869 3 0.160513643659711 RFvsST 218049 829541507 829323459 no 82.8808867863139 TraesCS3B01G007200 chr3B_3666320 chr3B 3666320 T T A A 4 synonymous_variant LOW transcript non_Triplet 3665457 3667325 1869 3 0.160513643659711 RFvsST 218049 829541507 829323459 no 82.8808867863139 TraesCS3B01G007200 chr3B_3667258 chr3B 3667258 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 3665457 3667325 1869 3 0.160513643659711 RFvsST 218049 829541507 829323459 no 82.8808867863139 TraesCS3B01G008600 chr3B_4323209 chr3B 4323209 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 4323605 4326624 3020 1 0.033112582781457 RFvsST 218049 829541507 829323459 no 37.5938643564039 TraesCS3B01G008700 chr3B_4328709 chr3B 4328709 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4329047 chr3B 4329047 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4329023 chr3B 4329023 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330302 chr3B 4330302 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330881 chr3B 4330881 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4329050 chr3B 4329050 A C A C 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330962 chr3B 4330962 G C G C 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4328742 chr3B 4328742 T T C C 4 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330559 chr3B 4330559 T A T A 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330938 chr3B 4330938 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4331001 chr3B 4331001 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4330899 chr3B 4330899 A T A T 3 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4329068 chr3B 4329068 T C T C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G008700 chr3B_4331412 chr3B 4331412 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4328452 4331767 3316 14 0.422195416164053 RFvsST 218049 829541507 829323459 no 35.9509186203647 TraesCS3B01G013100 chr3B_5939595 chr3B 5939595 A G A G 3 synonymous_variant LOW transcript unique_Triplet 5938510 5939991 1482 2 0.134952766531714 RFvsST 218049 829541507 829323459 no 226.444103037998 TraesCS3B01G013100 chr3B_5940045 chr3B 5940045 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 5938510 5939991 1482 2 0.134952766531714 RFvsST 218049 829541507 829323459 no 226.444103037998 TraesCS3B01G013300 chr3B_5954878 chr3B 5954878 T A T A 3 missense_variant MODERATE transcript unique_Triplet 5953206 5955049 1844 1 0.0542299349240781 RFvsST 218049 829541507 829323459 no 63.8032841811813 TraesCS3B01G014900 chr3B_6252179 chr3B 6252179 C T C T 3 synonymous_variant LOW transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6253112 chr3B 6253112 G A G A 3 missense_variant MODERATE transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6250541 chr3B 6250541 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6250453 chr3B 6250453 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6253310 chr3B 6253310 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6251177 chr3B 6251177 A G A G 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6250454 chr3B 6250454 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6250439 chr3B 6250439 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6253090 chr3B 6253090 G A G A 3 synonymous_variant LOW transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G014900 chr3B_6250448 chr3B 6250448 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 6250580 6253266 2687 10 0.372162262746558 RFvsST 218049 829541507 829323459 no 648.645331040492 TraesCS3B01G016300 chr3B_6666586 chr3B 6666586 A G A G 3 missense_variant MODERATE transcript non_Triplet 6665622 6667420 1799 1 0.0555864369093941 RFvsST 218049 829541507 829323459 no 70.8341266346884 TraesCS3B01G020500 chr3B_8782215 chr3B 8782215 A A C C 4 missense_variant MODERATE transcript non_Triplet 8781311 8782342 1032 1 0.0968992248062016 RFvsST 218049 829541507 829323459 no 450.763963213918 TraesCS3B01G020700 chr3B_8793156 chr3B 8793156 C C T T 4 synonymous_variant LOW transcript unique_Triplet 8792944 8793981 1038 5 0.481695568400771 RFvsST 218049 829541507 829323459 no 624.985338469168 TraesCS3B01G020700 chr3B_8793338 chr3B 8793338 G G A A 4 missense_variant MODERATE transcript unique_Triplet 8792944 8793981 1038 5 0.481695568400771 RFvsST 218049 829541507 829323459 no 624.985338469168 TraesCS3B01G020700 chr3B_8793159 chr3B 8793159 G G A A 4 synonymous_variant LOW transcript unique_Triplet 8792944 8793981 1038 5 0.481695568400771 RFvsST 218049 829541507 829323459 no 624.985338469168 TraesCS3B01G020700 chr3B_8792923 chr3B 8792923 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 8792944 8793981 1038 5 0.481695568400771 RFvsST 218049 829541507 829323459 no 624.985338469168 TraesCS3B01G020700 chr3B_8793340 chr3B 8793340 C C G G 4 missense_variant MODERATE transcript unique_Triplet 8792944 8793981 1038 5 0.481695568400771 RFvsST 218049 829541507 829323459 no 624.985338469168 TraesCS3B01G022500 chr3B_9780220 chr3B 9780220 T C T C 3 synonymous_variant LOW transcript unique_Triplet 9776149 9782832 6684 3 0.0448833034111311 RFvsST 218049 829541507 829323459 no 234.17122508591 TraesCS3B01G022500 chr3B_9776886 chr3B 9776886 A G A G 3 missense_variant MODERATE transcript unique_Triplet 9776149 9782832 6684 3 0.0448833034111311 RFvsST 218049 829541507 829323459 no 234.17122508591 TraesCS3B01G022500 chr3B_9780243 chr3B 9780243 A G A G 3 missense_variant MODERATE transcript unique_Triplet 9776149 9782832 6684 3 0.0448833034111311 RFvsST 218049 829541507 829323459 no 234.17122508591 TraesCS3B01G022900 chr3B_9917700 chr3B 9917700 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 9914080 9917734 3655 3 0.0820793433652531 RFvsST 218049 829541507 829323459 no 1864.32272367129 TraesCS3B01G022900 chr3B_9914351 chr3B 9914351 A C A C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 9914080 9917734 3655 3 0.0820793433652531 RFvsST 218049 829541507 829323459 no 1864.32272367129 TraesCS3B01G022900 chr3B_9917641 chr3B 9917641 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 9914080 9917734 3655 3 0.0820793433652531 RFvsST 218049 829541507 829323459 no 1864.32272367129 TraesCS3B01G023100 chr3B_9931719 chr3B 9931719 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 9930559 9931345 787 1 0.127064803049555 RFvsST 218049 829541507 829323459 no 1.79381786989184 TraesCS3B01G023200 chr3B_9934134 chr3B 9934134 G G A A 4 missense_variant MODERATE transcript unique_Triplet 9931864 9939291 7428 4 0.053850296176629 RFvsST 218049 829541507 829323459 no 83.0502821451868 TraesCS3B01G023200 chr3B_9938271 chr3B 9938271 C C T T 4 synonymous_variant LOW transcript unique_Triplet 9931864 9939291 7428 4 0.053850296176629 RFvsST 218049 829541507 829323459 no 83.0502821451868 TraesCS3B01G023200 chr3B_9937277 chr3B 9937277 C C T T 4 missense_variant MODERATE transcript unique_Triplet 9931864 9939291 7428 4 0.053850296176629 RFvsST 218049 829541507 829323459 no 83.0502821451868 TraesCS3B01G023200 chr3B_9934127 chr3B 9934127 G G T T 4 missense_variant MODERATE transcript unique_Triplet 9931864 9939291 7428 4 0.053850296176629 RFvsST 218049 829541507 829323459 no 83.0502821451868 TraesCS3B01G023700 chr3B_10201810 chr3B 10201810 C C G G 4 synonymous_variant LOW transcript non_Triplet 10199315 10201933 2619 5 0.190912562046583 RFvsST 218049 829541507 829323459 no 245.096545379306 TraesCS3B01G023700 chr3B_10199744 chr3B 10199744 C C T T 4 synonymous_variant LOW transcript non_Triplet 10199315 10201933 2619 5 0.190912562046583 RFvsST 218049 829541507 829323459 no 245.096545379306 TraesCS3B01G023700 chr3B_10200017 chr3B 10200017 G G A A 4 synonymous_variant LOW transcript non_Triplet 10199315 10201933 2619 5 0.190912562046583 RFvsST 218049 829541507 829323459 no 245.096545379306 TraesCS3B01G023700 chr3B_10201866 chr3B 10201866 T T G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 10199315 10201933 2619 5 0.190912562046583 RFvsST 218049 829541507 829323459 no 245.096545379306 TraesCS3B01G023700 chr3B_10201816 chr3B 10201816 G G T T 4 synonymous_variant LOW transcript non_Triplet 10199315 10201933 2619 5 0.190912562046583 RFvsST 218049 829541507 829323459 no 245.096545379306 TraesCS3B01G024900 chr3B_10708438 chr3B 10708438 C C A A 4 missense_variant MODERATE transcript unique_Triplet 10708017 10716897 8881 1 0.0112599932440041 RFvsST 218049 829541507 829323459 no 287.125103052756 TraesCS3B01G026700 chr3B_11603175 chr3B 11603175 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 11601743 11603083 1341 1 0.0745712155108128 RFvsST 218049 829541507 829323459 no 89.0509862412553 TraesCS3B01G030500 chr3B_13964066 chr3B 13964066 G G A A 4 missense_variant MODERATE transcript unique_Triplet 13961475 13964705 3231 2 0.0619003404518725 RFvsST 218049 829541507 829323459 no 536.804240239599 TraesCS3B01G030500 chr3B_13966238 chr3B 13966238 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 13961475 13964705 3231 2 0.0619003404518725 RFvsST 218049 829541507 829323459 no 536.804240239599 TraesCS3B01G030600 chr3B_13966989 chr3B 13966989 T T C C 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966838 chr3B 13966838 A A G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13965146 chr3B 13965146 C C G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13965833 chr3B 13965833 G G A A 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966106 chr3B 13966106 A A G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966455 chr3B 13966455 G G A A 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966672 chr3B 13966672 C C G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966751 chr3B 13966751 C C T T 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966633 chr3B 13966633 G G A A 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966053 chr3B 13966053 T T C C 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13965817 chr3B 13965817 A A T T 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966116 chr3B 13966116 A A G G 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966476 chr3B 13966476 C C T T 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966138 chr3B 13966138 C C G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966338 chr3B 13966338 A A G G 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966620 chr3B 13966620 G G C C 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966271 chr3B 13966271 T T C C 4 splice_region_variant&intron_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13965996 chr3B 13965996 C C G G 4 missense_variant MODERATE transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G030600 chr3B_13966359 chr3B 13966359 G G A A 4 synonymous_variant LOW transcript non_Triplet 13965118 13967400 2283 19 0.832238282961016 RFvsST 218049 829541507 829323459 no 861.803179484009 TraesCS3B01G033000 chr3B_16038548 chr3B 16038548 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 16035816 16037423 1608 2 0.124378109452736 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G033000 chr3B_16038519 chr3B 16038519 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 16035816 16037423 1608 2 0.124378109452736 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G034400 chr3B_16440896 chr3B 16440896 G G A A 4 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16442468 chr3B 16442468 C G C G 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16441531 chr3B 16441531 C T C T 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16440830 chr3B 16440830 C C G G 4 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16443466 chr3B 16443466 G G T T 4 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16444410 chr3B 16444410 C T C T 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16442402 chr3B 16442402 C T C T 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16442293 chr3B 16442293 G G T T 4 missense_variant MODERATE transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16442132 chr3B 16442132 G A G A 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16444456 chr3B 16444456 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16444551 chr3B 16444551 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16443539 chr3B 16443539 G G C C 4 missense_variant MODERATE transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034400 chr3B_16439861 chr3B 16439861 C G C G 3 synonymous_variant LOW transcript unique_Triplet 16439811 16444446 4636 13 0.280414150129422 RFvsST 218049 829541507 829323459 no 355.478897537476 TraesCS3B01G034500 chr3B_16455391 chr3B 16455391 C C T T 4 missense_variant MODERATE transcript unique_Triplet 16450892 16455446 4555 3 0.0658616904500549 RFvsST 218049 829541507 829323459 no 557.645733490083 TraesCS3B01G034500 chr3B_16455296 chr3B 16455296 C C T T 4 synonymous_variant LOW transcript unique_Triplet 16450892 16455446 4555 3 0.0658616904500549 RFvsST 218049 829541507 829323459 no 557.645733490083 TraesCS3B01G034500 chr3B_16450948 chr3B 16450948 G G A A 4 synonymous_variant LOW transcript unique_Triplet 16450892 16455446 4555 3 0.0658616904500549 RFvsST 218049 829541507 829323459 no 557.645733490083 TraesCS3B01G034600 chr3B_16458692 chr3B 16458692 C C G G 4 missense_variant MODERATE transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G034600 chr3B_16462549 chr3B 16462549 C C T T 4 missense_variant MODERATE transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G034600 chr3B_16462560 chr3B 16462560 T C T C 3 missense_variant MODERATE transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G034600 chr3B_16462551 chr3B 16462551 G G T T 4 missense_variant MODERATE transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G034600 chr3B_16462721 chr3B 16462721 G A G A 3 synonymous_variant LOW transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G034600 chr3B_16458364 chr3B 16458364 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 16458069 16463281 5213 6 0.115096873201611 RFvsST 218049 829541507 829323459 no 298.692898361054 TraesCS3B01G035200 chr3B_17189790 chr3B 17189790 G T G T 3 missense_variant MODERATE transcript unique_Triplet 17187234 17190692 3459 5 0.144550448106389 RFvsST 218049 829541507 829323459 no 643.186024970891 TraesCS3B01G035200 chr3B_17189432 chr3B 17189432 G T G T 3 synonymous_variant LOW transcript unique_Triplet 17187234 17190692 3459 5 0.144550448106389 RFvsST 218049 829541507 829323459 no 643.186024970891 TraesCS3B01G035200 chr3B_17190033 chr3B 17190033 A G A G 3 missense_variant MODERATE transcript unique_Triplet 17187234 17190692 3459 5 0.144550448106389 RFvsST 218049 829541507 829323459 no 643.186024970891 TraesCS3B01G035200 chr3B_17189625 chr3B 17189625 A G A G 3 missense_variant MODERATE transcript unique_Triplet 17187234 17190692 3459 5 0.144550448106389 RFvsST 218049 829541507 829323459 no 643.186024970891 TraesCS3B01G035200 chr3B_17190702 chr3B 17190702 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17187234 17190692 3459 5 0.144550448106389 RFvsST 218049 829541507 829323459 no 643.186024970891 TraesCS3B01G035600 chr3B_17559193 chr3B 17559193 T C T C 3 missense_variant MODERATE transcript unique_Triplet 17558931 17563036 4106 3 0.0730638090599123 RFvsST 218049 829541507 829323459 no 723.979292009998 TraesCS3B01G035600 chr3B_17559323 chr3B 17559323 G C G C 3 synonymous_variant LOW transcript unique_Triplet 17558931 17563036 4106 3 0.0730638090599123 RFvsST 218049 829541507 829323459 no 723.979292009998 TraesCS3B01G035600 chr3B_17558879 chr3B 17558879 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17558931 17563036 4106 3 0.0730638090599123 RFvsST 218049 829541507 829323459 no 723.979292009998 TraesCS3B01G035800 chr3B_17602009 chr3B 17602009 T C T C 3 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601967 chr3B 17601967 G G A A 4 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601954 chr3B 17601954 T T C C 4 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601895 chr3B 17601895 T C T C 3 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601965 chr3B 17601965 C G C G 3 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601793 chr3B 17601793 G A G A 3 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601845 chr3B 17601845 G A G A 3 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601767 chr3B 17601767 G C G C 3 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17602140 chr3B 17602140 G A G A 3 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17602127 chr3B 17602127 C T C T 3 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601826 chr3B 17601826 C C T T 4 missense_variant MODERATE transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035800 chr3B_17601839 chr3B 17601839 G C G C 3 synonymous_variant LOW transcript non_Triplet 17595756 17602153 6398 12 0.187558612066271 RFvsST 218049 829541507 829323459 no 355.704013931596 TraesCS3B01G035900 chr3B_17614671 chr3B 17614671 C T C T 3 synonymous_variant LOW transcript unique_Triplet 17613824 17616166 2343 5 0.213401621852326 RFvsST 218049 829541507 829323459 no 29.34620542638 TraesCS3B01G035900 chr3B_17616226 chr3B 17616226 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17613824 17616166 2343 5 0.213401621852326 RFvsST 218049 829541507 829323459 no 29.34620542638 TraesCS3B01G035900 chr3B_17614749 chr3B 17614749 T A T A 3 synonymous_variant LOW transcript unique_Triplet 17613824 17616166 2343 5 0.213401621852326 RFvsST 218049 829541507 829323459 no 29.34620542638 TraesCS3B01G035900 chr3B_17616146 chr3B 17616146 T C T C 3 missense_variant MODERATE transcript unique_Triplet 17613824 17616166 2343 5 0.213401621852326 RFvsST 218049 829541507 829323459 no 29.34620542638 TraesCS3B01G035900 chr3B_17614713 chr3B 17614713 A T A T 3 synonymous_variant LOW transcript unique_Triplet 17613824 17616166 2343 5 0.213401621852326 RFvsST 218049 829541507 829323459 no 29.34620542638 TraesCS3B01G039600 chr3B_19250861 chr3B 19250861 T T C C 4 synonymous_variant LOW transcript unique_Triplet 19247476 19251126 3651 5 0.136948781155848 RFvsST 218049 829541507 829323459 no 48.8221024032385 TraesCS3B01G039600 chr3B_19251041 chr3B 19251041 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 19247476 19251126 3651 5 0.136948781155848 RFvsST 218049 829541507 829323459 no 48.8221024032385 TraesCS3B01G039600 chr3B_19247916 chr3B 19247916 T T C C 4 synonymous_variant LOW transcript unique_Triplet 19247476 19251126 3651 5 0.136948781155848 RFvsST 218049 829541507 829323459 no 48.8221024032385 TraesCS3B01G039600 chr3B_19247600 chr3B 19247600 A A G G 4 missense_variant MODERATE transcript unique_Triplet 19247476 19251126 3651 5 0.136948781155848 RFvsST 218049 829541507 829323459 no 48.8221024032385 TraesCS3B01G039600 chr3B_19249747 chr3B 19249747 C C T T 4 synonymous_variant LOW transcript unique_Triplet 19247476 19251126 3651 5 0.136948781155848 RFvsST 218049 829541507 829323459 no 48.8221024032385 TraesCS3B01G039900 chr3B_19263961 chr3B 19263961 G G A A 4 synonymous_variant LOW transcript unique_Triplet 19263469 19270289 6821 3 0.0439818208473831 RFvsST 218049 829541507 829323459 no 207.946491009479 TraesCS3B01G039900 chr3B_19269232 chr3B 19269232 G G A A 4 missense_variant MODERATE transcript unique_Triplet 19263469 19270289 6821 3 0.0439818208473831 RFvsST 218049 829541507 829323459 no 207.946491009479 TraesCS3B01G039900 chr3B_19266756 chr3B 19266756 T T G G 4 synonymous_variant LOW transcript unique_Triplet 19263469 19270289 6821 3 0.0439818208473831 RFvsST 218049 829541507 829323459 no 207.946491009479 TraesCS3B01G040000 chr3B_19386733 chr3B 19386733 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 19387714 19393525 5812 4 0.0688231245698555 RFvsST 218049 829541507 829323459 no 446.160205863616 TraesCS3B01G040000 chr3B_19387945 chr3B 19387945 G G A A 4 synonymous_variant LOW transcript unique_Triplet 19387714 19393525 5812 4 0.0688231245698555 RFvsST 218049 829541507 829323459 no 446.160205863616 TraesCS3B01G040000 chr3B_19393334 chr3B 19393334 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 19387714 19393525 5812 4 0.0688231245698555 RFvsST 218049 829541507 829323459 no 446.160205863616 TraesCS3B01G040000 chr3B_19386761 chr3B 19386761 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 19387714 19393525 5812 4 0.0688231245698555 RFvsST 218049 829541507 829323459 no 446.160205863616 TraesCS3B01G040600 chr3B_20054807 chr3B 20054807 T C T C 3 missense_variant MODERATE transcript unique_Triplet 20053695 20055260 1566 5 0.319284802043423 RFvsST 218049 829541507 829323459 no 203.125220536643 TraesCS3B01G040600 chr3B_20051868 chr3B 20051868 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 20053695 20055260 1566 5 0.319284802043423 RFvsST 218049 829541507 829323459 no 203.125220536643 TraesCS3B01G040600 chr3B_20051906 chr3B 20051906 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20053695 20055260 1566 5 0.319284802043423 RFvsST 218049 829541507 829323459 no 203.125220536643 TraesCS3B01G040600 chr3B_20052071 chr3B 20052071 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20053695 20055260 1566 5 0.319284802043423 RFvsST 218049 829541507 829323459 no 203.125220536643 TraesCS3B01G040600 chr3B_20055132 chr3B 20055132 G A G A 3 synonymous_variant LOW transcript unique_Triplet 20053695 20055260 1566 5 0.319284802043423 RFvsST 218049 829541507 829323459 no 203.125220536643 TraesCS3B01G040800 chr3B_20320419 chr3B 20320419 C T C T 3 synonymous_variant LOW transcript unique_Triplet 20319983 20320464 482 1 0.20746887966805 RFvsST 218049 829541507 829323459 no 57.9235089491482 TraesCS3B01G042000 chr3B_21002980 chr3B 21002980 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 21003128 21003706 579 2 0.345423143350604 RFvsST 218049 829541507 829323459 no 406.725846259088 TraesCS3B01G042000 chr3B_21003041 chr3B 21003041 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 21003128 21003706 579 2 0.345423143350604 RFvsST 218049 829541507 829323459 no 406.725846259088 TraesCS3B01G042200 chr3B_21386742 chr3B 21386742 C C T T 4 missense_variant MODERATE transcript unique_Triplet 21385116 21387054 1939 2 0.103145951521403 RFvsST 218049 829541507 829323459 no 27.1745023440205 TraesCS3B01G042200 chr3B_21386760 chr3B 21386760 T T C C 4 missense_variant MODERATE transcript unique_Triplet 21385116 21387054 1939 2 0.103145951521403 RFvsST 218049 829541507 829323459 no 27.1745023440205 TraesCS3B01G042400 chr3B_21769639 chr3B 21769639 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21771111 chr3B 21771111 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21771182 chr3B 21771182 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770223 chr3B 21770223 G T G T 3 missense_variant MODERATE transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770415 chr3B 21770415 A G A G 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770736 chr3B 21770736 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770416 chr3B 21770416 T G T G 3 missense_variant MODERATE transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770790 chr3B 21770790 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770307 chr3B 21770307 A C A C 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21769683 chr3B 21769683 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770733 chr3B 21770733 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770789 chr3B 21770789 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21769685 chr3B 21769685 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770170 chr3B 21770170 T C T C 3 missense_variant MODERATE transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770652 chr3B 21770652 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770367 chr3B 21770367 G A G A 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770646 chr3B 21770646 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770244 chr3B 21770244 G C G C 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21771108 chr3B 21771108 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770565 chr3B 21770565 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770175 chr3B 21770175 G C G C 3 missense_variant MODERATE transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770310 chr3B 21770310 G A G A 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770475 chr3B 21770475 A C A C 3 synonymous_variant LOW transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21770091 chr3B 21770091 A T A T 3 missense_variant MODERATE transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042400 chr3B_21769631 chr3B 21769631 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21770070 21771613 1544 25 1.61917098445596 RFvsST 218049 829541507 829323459 no 186.026446371454 TraesCS3B01G042600 chr3B_22056764 chr3B 22056764 G A G A 3 missense_variant MODERATE transcript unique_Triplet 22053815 22056795 2981 2 0.0670915800067092 RFvsST 218049 829541507 829323459 no 37.4362360945979 TraesCS3B01G042600 chr3B_22054415 chr3B 22054415 A T A T 3 missense_variant MODERATE transcript unique_Triplet 22053815 22056795 2981 2 0.0670915800067092 RFvsST 218049 829541507 829323459 no 37.4362360945979 TraesCS3B01G045400 chr3B_22843573 chr3B 22843573 C C A A 4 missense_variant MODERATE transcript unique_Triplet 22841453 22845177 3725 1 0.0268456375838926 RFvsST 218049 829541507 829323459 no 50.5104164285501 TraesCS3B01G045500 chr3B_22860750 chr3B 22860750 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22861332 chr3B 22861332 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22861053 chr3B 22861053 G G C C 4 synonymous_variant LOW transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22860816 chr3B 22860816 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22861172 chr3B 22861172 A A G G 4 missense_variant MODERATE transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22861418 chr3B 22861418 T T C C 4 missense_variant MODERATE transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22860958 chr3B 22860958 G G A A 4 missense_variant MODERATE transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045500 chr3B_22860858 chr3B 22860858 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22860892 22861455 564 8 1.41843971631206 RFvsST 218049 829541507 829323459 no 121.492765054573 TraesCS3B01G045900 chr3B_23184696 chr3B 23184696 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 23182755 23184495 1741 1 0.0574382538770821 RFvsST 218049 829541507 829323459 no 57.082482676624 TraesCS3B01G046100 chr3B_23599364 chr3B 23599364 G G A A 4 missense_variant MODERATE transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600185 chr3B 23600185 C C T T 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600086 chr3B 23600086 T T G G 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600417 chr3B 23600417 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600313 chr3B 23600313 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600083 chr3B 23600083 C C G G 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600176 chr3B 23600176 G G A A 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600044 chr3B 23600044 C C A A 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046100 chr3B_23600230 chr3B 23600230 C C T T 4 synonymous_variant LOW transcript unique_Triplet 23596388 23600489 4102 9 0.219405168210629 RFvsST 218049 829541507 829323459 no 254.782990264905 TraesCS3B01G046800 chr3B_23783054 chr3B 23783054 C C T T 4 missense_variant MODERATE transcript unique_Triplet 23781849 23787087 5239 4 0.0763504485588853 RFvsST 218049 829541507 829323459 no 255.022991992077 TraesCS3B01G046800 chr3B_23782737 chr3B 23782737 A A G G 4 synonymous_variant LOW transcript unique_Triplet 23781849 23787087 5239 4 0.0763504485588853 RFvsST 218049 829541507 829323459 no 255.022991992077 TraesCS3B01G046800 chr3B_23786872 chr3B 23786872 T T C C 4 missense_variant MODERATE transcript unique_Triplet 23781849 23787087 5239 4 0.0763504485588853 RFvsST 218049 829541507 829323459 no 255.022991992077 TraesCS3B01G046800 chr3B_23786020 chr3B 23786020 G G A A 4 synonymous_variant LOW transcript unique_Triplet 23781849 23787087 5239 4 0.0763504485588853 RFvsST 218049 829541507 829323459 no 255.022991992077 TraesCS3B01G047000 chr3B_23946043 chr3B 23946043 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 23943884 23945627 1744 1 0.0573394495412844 RFvsST 218049 829541507 829323459 no 15.2124754311869 TraesCS3B01G047100 chr3B_23951939 chr3B 23951939 C C G G 4 missense_variant MODERATE transcript unique_Triplet 23946111 23952781 6671 2 0.0299805126667666 RFvsST 218049 829541507 829323459 no 66.0011765662058 TraesCS3B01G047100 chr3B_23951918 chr3B 23951918 C C T T 4 missense_variant MODERATE transcript unique_Triplet 23946111 23952781 6671 2 0.0299805126667666 RFvsST 218049 829541507 829323459 no 66.0011765662058 TraesCS3B01G047300 chr3B_23962394 chr3B 23962394 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 23957632 23962224 4593 1 0.0217722621380361 RFvsST 218049 829541507 829323459 no 266.956008561027 TraesCS3B01G048800 chr3B_24788319 chr3B 24788319 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 24788213 24789049 837 1 0.1194743130227 RFvsST 218049 829541507 829323459 no 258.435156631702 TraesCS3B01G048900 chr3B_24819093 chr3B 24819093 A G A G 3 missense_variant MODERATE transcript non_Triplet 24818816 24819601 786 2 0.254452926208651 RFvsST 218049 829541507 829323459 no 76.9092122348122 TraesCS3B01G048900 chr3B_24818748 chr3B 24818748 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 24818816 24819601 786 2 0.254452926208651 RFvsST 218049 829541507 829323459 no 76.9092122348122 TraesCS3B01G049600 chr3B_24942658 chr3B 24942658 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 24937013 24937780 768 2 0.260416666666667 RFvsST 218049 829541507 829323459 no 7.81622737794144 TraesCS3B01G049600 chr3B_24942754 chr3B 24942754 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 24937013 24937780 768 2 0.260416666666667 RFvsST 218049 829541507 829323459 no 7.81622737794144 TraesCS3B01G049700 chr3B_24940377 chr3B 24940377 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24944179 chr3B 24944179 T C T C 3 synonymous_variant LOW transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24943200 chr3B 24943200 G A G A 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24942962 chr3B 24942962 C G C G 3 intron_variant MODIFIER transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24939271 chr3B 24939271 G A G A 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24938949 chr3B 24938949 C A C A 3 synonymous_variant LOW transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24939337 chr3B 24939337 C G C G 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24939413 chr3B 24939413 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24939277 chr3B 24939277 T C T C 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24941103 chr3B 24941103 C T C T 3 synonymous_variant LOW transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24940309 chr3B 24940309 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24944376 chr3B 24944376 C T C T 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24942790 chr3B 24942790 A T A T 3 intron_variant MODIFIER transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G049700 chr3B_24938795 chr3B 24938795 C T C T 3 missense_variant MODERATE transcript non_Triplet 24938734 24944677 5944 14 0.235531628532974 RFvsST 218049 829541507 829323459 no 615.727798968229 TraesCS3B01G050500 chr3B_25275991 chr3B 25275991 C T C T 3 synonymous_variant LOW transcript non_Triplet 25273940 25276165 2226 1 0.0449236298292902 RFvsST 218049 829541507 829323459 no 487.589542608436 TraesCS3B01G056500 chr3B_29718094 chr3B 29718094 G G T T 4 missense_variant MODERATE transcript non_Triplet 29714654 29719237 4584 3 0.0654450261780105 RFvsST 218049 829541507 829323459 no 117.613926062844 TraesCS3B01G056500 chr3B_29718526 chr3B 29718526 A A G G 4 missense_variant MODERATE transcript non_Triplet 29714654 29719237 4584 3 0.0654450261780105 RFvsST 218049 829541507 829323459 no 117.613926062844 TraesCS3B01G056500 chr3B_29718986 chr3B 29718986 T T G G 4 stop_gained HIGH transcript non_Triplet 29714654 29719237 4584 3 0.0654450261780105 RFvsST 218049 829541507 829323459 no 117.613926062844 TraesCS3B01G060500 chr3B_32286496 chr3B 32286496 C T C T 3 synonymous_variant LOW transcript unique_Triplet 32285475 32288059 2585 5 0.193423597678917 RFvsST 218049 829541507 829323459 no 890.866593862939 TraesCS3B01G060500 chr3B_32285363 chr3B 32285363 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 32285475 32288059 2585 5 0.193423597678917 RFvsST 218049 829541507 829323459 no 890.866593862939 TraesCS3B01G060500 chr3B_32286729 chr3B 32286729 C C T T 4 missense_variant MODERATE transcript unique_Triplet 32285475 32288059 2585 5 0.193423597678917 RFvsST 218049 829541507 829323459 no 890.866593862939 TraesCS3B01G060500 chr3B_32287877 chr3B 32287877 A G A G 3 synonymous_variant LOW transcript unique_Triplet 32285475 32288059 2585 5 0.193423597678917 RFvsST 218049 829541507 829323459 no 890.866593862939 TraesCS3B01G060500 chr3B_32286994 chr3B 32286994 G T G T 3 missense_variant MODERATE transcript unique_Triplet 32285475 32288059 2585 5 0.193423597678917 RFvsST 218049 829541507 829323459 no 890.866593862939 TraesCS3B01G061700 chr3B_33958197 chr3B 33958197 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 33955222 33956535 1314 1 0.076103500761035 RFvsST 218049 829541507 829323459 no 51387.2828345839 TraesCS3B01G064500 chr3B_35876759 chr3B 35876759 G G C C 4 synonymous_variant LOW transcript non_Triplet 35874351 35876794 2444 2 0.0818330605564648 RFvsST 218049 829541507 829323459 no 36.3266115257021 TraesCS3B01G064500 chr3B_35876562 chr3B 35876562 G A G A 3 synonymous_variant LOW transcript non_Triplet 35874351 35876794 2444 2 0.0818330605564648 RFvsST 218049 829541507 829323459 no 36.3266115257021 TraesCS3B01G064600 chr3B_36467358 chr3B 36467358 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 36464528 36466797 2270 2 0.0881057268722467 RFvsST 218049 829541507 829323459 no 16.5493165887244 TraesCS3B01G064600 chr3B_36464177 chr3B 36464177 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 36464528 36466797 2270 2 0.0881057268722467 RFvsST 218049 829541507 829323459 no 16.5493165887244 TraesCS3B01G065200 chr3B_38868425 chr3B 38868425 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 38861758 38868571 6814 2 0.0293513354857646 RFvsST 218049 829541507 829323459 no 614.965746115252 TraesCS3B01G065200 chr3B_38868395 chr3B 38868395 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 38861758 38868571 6814 2 0.0293513354857646 RFvsST 218049 829541507 829323459 no 614.965746115252 TraesCS3B01G066100 chr3B_39460443 chr3B 39460443 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 39455203 39459951 4749 1 0.0210570646451885 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G066200 chr3B_39460530 chr3B 39460530 G G A A 4 missense_variant MODERATE transcript non_Triplet 39460445 39464119 3675 3 0.0816326530612245 RFvsST 218049 829541507 829323459 no 78.0078518421334 TraesCS3B01G066200 chr3B_39462619 chr3B 39462619 G A G A 3 synonymous_variant LOW transcript non_Triplet 39460445 39464119 3675 3 0.0816326530612245 RFvsST 218049 829541507 829323459 no 78.0078518421334 TraesCS3B01G066200 chr3B_39464093 chr3B 39464093 G A G A 3 synonymous_variant LOW transcript non_Triplet 39460445 39464119 3675 3 0.0816326530612245 RFvsST 218049 829541507 829323459 no 78.0078518421334 TraesCS3B01G067300 chr3B_39902661 chr3B 39902661 C C T T 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39905048 chr3B 39905048 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904609 chr3B 39904609 T T C C 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39903083 chr3B 39903083 G G C C 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904826 chr3B 39904826 C C T T 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904832 chr3B 39904832 C C G G 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39901123 chr3B 39901123 G G C C 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39901142 chr3B 39901142 A A C C 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39900835 chr3B 39900835 G G C C 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39901167 chr3B 39901167 T T C C 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904576 chr3B 39904576 C C A A 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39900796 chr3B 39900796 A A G G 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39900883 chr3B 39900883 A A G G 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904935 chr3B 39904935 A A G G 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39901030 chr3B 39901030 G G A A 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39900777 chr3B 39900777 G G A A 4 missense_variant MODERATE transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G067300 chr3B_39904594 chr3B 39904594 T T C C 4 synonymous_variant LOW transcript non_Triplet 39900743 39905018 4276 17 0.397567820392891 RFvsST 218049 829541507 829323459 no 203.032676102749 TraesCS3B01G068900 chr3B_40908531 chr3B 40908531 G T G T 3 synonymous_variant LOW transcript unique_Triplet 40908477 40909799 1323 2 0.151171579743008 RFvsST 218049 829541507 829323459 no 151.326161852929 TraesCS3B01G068900 chr3B_40908558 chr3B 40908558 G A G A 3 synonymous_variant LOW transcript unique_Triplet 40908477 40909799 1323 2 0.151171579743008 RFvsST 218049 829541507 829323459 no 151.326161852929 TraesCS3B01G069100 chr3B_41014576 chr3B 41014576 G G A A 4 synonymous_variant LOW transcript non_Triplet 41014129 41015973 1845 3 0.16260162601626 RFvsST 218049 829541507 829323459 no 621.999433772477 TraesCS3B01G069100 chr3B_41013970 chr3B 41013970 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 41014129 41015973 1845 3 0.16260162601626 RFvsST 218049 829541507 829323459 no 621.999433772477 TraesCS3B01G069100 chr3B_41015976 chr3B 41015976 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 41014129 41015973 1845 3 0.16260162601626 RFvsST 218049 829541507 829323459 no 621.999433772477 TraesCS3B01G069800 chr3B_41668516 chr3B 41668516 T T C C 4 missense_variant MODERATE transcript non_Triplet 41667931 41669572 1642 2 0.121802679658952 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G069800 chr3B_41668369 chr3B 41668369 G G T T 4 synonymous_variant LOW transcript non_Triplet 41667931 41669572 1642 2 0.121802679658952 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070300 chr3B_42144181 chr3B 42144181 C T C T 3 synonymous_variant LOW transcript non_Triplet 42144163 42147602 3440 5 0.145348837209302 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070300 chr3B_42144084 chr3B 42144084 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 42144163 42147602 3440 5 0.145348837209302 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070300 chr3B_42146108 chr3B 42146108 G A G A 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 42144163 42147602 3440 5 0.145348837209302 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070300 chr3B_42146111 chr3B 42146111 A A G G 4 synonymous_variant LOW transcript non_Triplet 42144163 42147602 3440 5 0.145348837209302 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070300 chr3B_42144003 chr3B 42144003 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 42144163 42147602 3440 5 0.145348837209302 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G070600 chr3B_42562026 chr3B 42562026 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 42562091 42565991 3901 3 0.0769033581133043 RFvsST 218049 829541507 829323459 no 40.2638612852565 TraesCS3B01G070600 chr3B_42564488 chr3B 42564488 G G T T 4 missense_variant MODERATE transcript unique_Triplet 42562091 42565991 3901 3 0.0769033581133043 RFvsST 218049 829541507 829323459 no 40.2638612852565 TraesCS3B01G070600 chr3B_42562056 chr3B 42562056 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 42562091 42565991 3901 3 0.0769033581133043 RFvsST 218049 829541507 829323459 no 40.2638612852565 TraesCS3B01G072200 chr3B_43556351 chr3B 43556351 G G A A 4 synonymous_variant LOW transcript non_Triplet 43556279 43558890 2612 2 0.0765696784073507 RFvsST 218049 829541507 829323459 no 33.5006113965008 TraesCS3B01G072200 chr3B_43556129 chr3B 43556129 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 43556279 43558890 2612 2 0.0765696784073507 RFvsST 218049 829541507 829323459 no 33.5006113965008 TraesCS3B01G072500 chr3B_43736479 chr3B 43736479 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 43736086 43740388 4303 4 0.0929584011155008 RFvsST 218049 829541507 829323459 no 59.6240747808755 TraesCS3B01G072500 chr3B_43736398 chr3B 43736398 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 43736086 43740388 4303 4 0.0929584011155008 RFvsST 218049 829541507 829323459 no 59.6240747808755 TraesCS3B01G072500 chr3B_43738036 chr3B 43738036 C C A A 4 missense_variant MODERATE transcript unique_Triplet 43736086 43740388 4303 4 0.0929584011155008 RFvsST 218049 829541507 829323459 no 59.6240747808755 TraesCS3B01G072500 chr3B_43737269 chr3B 43737269 A A T T 4 synonymous_variant LOW transcript unique_Triplet 43736086 43740388 4303 4 0.0929584011155008 RFvsST 218049 829541507 829323459 no 59.6240747808755 TraesCS3B01G073700 chr3B_44286239 chr3B 44286239 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 44282974 44284540 1567 1 0.0638162093171666 RFvsST 218049 829541507 829323459 no 71.3617518599199 TraesCS3B01G077000 chr3B_47463468 chr3B 47463468 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 47458881 47460803 1923 1 0.0520020800832033 RFvsST 218049 829541507 829323459 no 5.87207872815064 TraesCS3B01G078900 chr3B_49860590 chr3B 49860590 T C T C 3 synonymous_variant LOW transcript unique_Triplet 49859260 49861457 2198 2 0.0909918107370337 RFvsST 218049 829541507 829323459 no 12.7252885280079 TraesCS3B01G078900 chr3B_49860540 chr3B 49860540 C T C T 3 synonymous_variant LOW transcript unique_Triplet 49859260 49861457 2198 2 0.0909918107370337 RFvsST 218049 829541507 829323459 no 12.7252885280079 TraesCS3B01G079300 chr3B_50231211 chr3B 50231211 T C T C 3 synonymous_variant LOW transcript non_Triplet 50231093 50231565 473 1 0.211416490486258 RFvsST 218049 829541507 829323459 no 92.1065974119421 TraesCS3B01G080200 chr3B_50793788 chr3B 50793788 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 50790520 50792611 2092 2 0.0956022944550669 RFvsST 218049 829541507 829323459 no 32.5713893260974 TraesCS3B01G080200 chr3B_50793799 chr3B 50793799 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 50790520 50792611 2092 2 0.0956022944550669 RFvsST 218049 829541507 829323459 no 32.5713893260974 TraesCS3B01G080400 chr3B_50916433 chr3B 50916433 T C T C 3 synonymous_variant LOW transcript unique_Triplet 50907270 50916442 9173 2 0.021803117845852 RFvsST 218049 829541507 829323459 no 41.6505571210832 TraesCS3B01G080400 chr3B_50916406 chr3B 50916406 T C T C 3 synonymous_variant LOW transcript unique_Triplet 50907270 50916442 9173 2 0.021803117845852 RFvsST 218049 829541507 829323459 no 41.6505571210832 TraesCS3B01G080500 chr3B_50930753 chr3B 50930753 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 50932437 50933318 882 1 0.113378684807256 RFvsST 218049 829541507 829323459 no 4.6973678524509 TraesCS3B01G081200 chr3B_51225093 chr3B 51225093 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 51225120 51226897 1778 2 0.112485939257593 RFvsST 218049 829541507 829323459 no 18.385223593054 TraesCS3B01G081200 chr3B_51225094 chr3B 51225094 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 51225120 51226897 1778 2 0.112485939257593 RFvsST 218049 829541507 829323459 no 18.385223593054 TraesCS3B01G081500 chr3B_51251981 chr3B 51251981 T G T G 3 missense_variant MODERATE transcript non_Triplet 51249096 51252152 3057 1 0.0327118089630357 RFvsST 218049 829541507 829323459 no 843.261555924699 TraesCS3B01G085200 chr3B_53804337 chr3B 53804337 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 53800304 53804052 3749 2 0.0533475593491598 RFvsST 218049 829541507 829323459 no 78.8862389351464 TraesCS3B01G085200 chr3B_53800301 chr3B 53800301 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 53800304 53804052 3749 2 0.0533475593491598 RFvsST 218049 829541507 829323459 no 78.8862389351464 TraesCS3B01G086400 chr3B_54758584 chr3B 54758584 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 54752105 54758652 6548 4 0.0610873549175321 RFvsST 218049 829541507 829323459 no 643.883771907403 TraesCS3B01G086400 chr3B_54757975 chr3B 54757975 A C A C 3 synonymous_variant LOW transcript unique_Triplet 54752105 54758652 6548 4 0.0610873549175321 RFvsST 218049 829541507 829323459 no 643.883771907403 TraesCS3B01G086400 chr3B_54757916 chr3B 54757916 C C A A 4 missense_variant MODERATE transcript unique_Triplet 54752105 54758652 6548 4 0.0610873549175321 RFvsST 218049 829541507 829323459 no 643.883771907403 TraesCS3B01G086400 chr3B_54752162 chr3B 54752162 C C T T 4 synonymous_variant LOW transcript unique_Triplet 54752105 54758652 6548 4 0.0610873549175321 RFvsST 218049 829541507 829323459 no 643.883771907403 TraesCS3B01G086900 chr3B_55128869 chr3B 55128869 C T C T 3 missense_variant MODERATE transcript unique_Triplet 55126492 55128978 2487 2 0.0804181745074387 RFvsST 218049 829541507 829323459 no 123.505003008724 TraesCS3B01G086900 chr3B_55128771 chr3B 55128771 C T C T 3 synonymous_variant LOW transcript unique_Triplet 55126492 55128978 2487 2 0.0804181745074387 RFvsST 218049 829541507 829323459 no 123.505003008724 TraesCS3B01G087400 chr3B_55456679 chr3B 55456679 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 55456681 55459679 2999 1 0.0333444481493831 RFvsST 218049 829541507 829323459 no 1249.96049151991 TraesCS3B01G087600 chr3B_55736347 chr3B 55736347 C T C T 3 synonymous_variant LOW transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55730302 chr3B 55730302 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55738357 chr3B 55738357 A G A G 3 missense_variant MODERATE transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55732168 chr3B 55732168 A T A T 3 synonymous_variant LOW transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55736390 chr3B 55736390 A G A G 3 missense_variant MODERATE transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55731195 chr3B 55731195 T C T C 3 missense_variant MODERATE transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55738391 chr3B 55738391 C T C T 3 missense_variant MODERATE transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55735574 chr3B 55735574 G A G A 3 missense_variant MODERATE transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G087600 chr3B_55736803 chr3B 55736803 C T C T 3 synonymous_variant LOW transcript unique_Triplet 55730627 55740596 9970 9 0.0902708124373119 RFvsST 218049 829541507 829323459 no 1576.76650258298 TraesCS3B01G089000 chr3B_59030790 chr3B 59030790 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 59030824 59036294 5471 1 0.0182781941144215 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G089200 chr3B_59064340 chr3B 59064340 A A G G 4 missense_variant MODERATE transcript unique_Triplet 59063675 59065684 2010 2 0.099502487562189 RFvsST 218049 829541507 829323459 no 70.776410418124 TraesCS3B01G089200 chr3B_59064322 chr3B 59064322 G G C C 4 missense_variant MODERATE transcript unique_Triplet 59063675 59065684 2010 2 0.099502487562189 RFvsST 218049 829541507 829323459 no 70.776410418124 TraesCS3B01G089800 chr3B_59210165 chr3B 59210165 A A G G 4 missense_variant MODERATE transcript unique_Triplet 59209792 59213693 3902 1 0.0256278831368529 RFvsST 218049 829541507 829323459 no 1804.69794380171 TraesCS3B01G090300 chr3B_59450893 chr3B 59450893 G G A A 4 missense_variant MODERATE transcript non_Triplet 59445454 59453720 8267 1 0.0120962864400629 RFvsST 218049 829541507 829323459 no 186.844649057865 TraesCS3B01G090400 chr3B_59459988 chr3B 59459988 T T C C 4 synonymous_variant LOW transcript unique_Triplet 59457005 59460120 3116 2 0.0641848523748395 RFvsST 218049 829541507 829323459 no 184.90297598663 TraesCS3B01G090400 chr3B_59458699 chr3B 59458699 A A C C 4 synonymous_variant LOW transcript unique_Triplet 59457005 59460120 3116 2 0.0641848523748395 RFvsST 218049 829541507 829323459 no 184.90297598663 TraesCS3B01G091100 chr3B_60254464 chr3B 60254464 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 60250952 60254585 3634 1 0.0275178866263071 RFvsST 218049 829541507 829323459 no 42.5044003903666 TraesCS3B01G093100 chr3B_62214888 chr3B 62214888 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 62215181 62217420 2240 2 0.0892857142857143 RFvsST 218049 829541507 829323459 no 629.366178838253 TraesCS3B01G093100 chr3B_62217036 chr3B 62217036 C C T T 4 missense_variant MODERATE transcript unique_Triplet 62215181 62217420 2240 2 0.0892857142857143 RFvsST 218049 829541507 829323459 no 629.366178838253 TraesCS3B01G093400 chr3B_62396892 chr3B 62396892 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 62392719 62396533 3815 1 0.0262123197903014 RFvsST 218049 829541507 829323459 no 533.260145615942 TraesCS3B01G094400 chr3B_63112412 chr3B 63112412 G G A A 4 missense_variant MODERATE transcript unique_Triplet 63107636 63118086 10451 1 0.00956846234810066 RFvsST 218049 829541507 829323459 no 39.2518387695233 TraesCS3B01G096100 chr3B_64414357 chr3B 64414357 G C G C 3 synonymous_variant LOW transcript non_Triplet 64413796 64414790 995 2 0.201005025125628 RFvsST 218049 829541507 829323459 no 147.51883588883 TraesCS3B01G096100 chr3B_64414320 chr3B 64414320 G T G T 3 missense_variant MODERATE transcript non_Triplet 64413796 64414790 995 2 0.201005025125628 RFvsST 218049 829541507 829323459 no 147.51883588883 TraesCS3B01G096200 chr3B_64416055 chr3B 64416055 C T C T 3 synonymous_variant LOW transcript non_Triplet 64415992 64416598 607 2 0.329489291598023 RFvsST 218049 829541507 829323459 no 248.328265314599 TraesCS3B01G096200 chr3B_64416207 chr3B 64416207 C T C T 3 synonymous_variant LOW transcript non_Triplet 64415992 64416598 607 2 0.329489291598023 RFvsST 218049 829541507 829323459 no 248.328265314599 TraesCS3B01G096600 chr3B_64509693 chr3B 64509693 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 64509653 64510864 1212 3 0.247524752475248 RFvsST 218049 829541507 829323459 no 620.19722609206 TraesCS3B01G096600 chr3B_64510211 chr3B 64510211 A A C C 4 synonymous_variant LOW transcript non_Triplet 64509653 64510864 1212 3 0.247524752475248 RFvsST 218049 829541507 829323459 no 620.19722609206 TraesCS3B01G096600 chr3B_64509054 chr3B 64509054 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 64509653 64510864 1212 3 0.247524752475248 RFvsST 218049 829541507 829323459 no 620.19722609206 TraesCS3B01G097000 chr3B_64706454 chr3B 64706454 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 64700982 64706132 5151 5 0.09706853038245 RFvsST 218049 829541507 829323459 no 306.346031731743 TraesCS3B01G097000 chr3B_64702574 chr3B 64702574 T T C C 4 missense_variant MODERATE transcript unique_Triplet 64700982 64706132 5151 5 0.09706853038245 RFvsST 218049 829541507 829323459 no 306.346031731743 TraesCS3B01G097000 chr3B_64702500 chr3B 64702500 G G A A 4 synonymous_variant LOW transcript unique_Triplet 64700982 64706132 5151 5 0.09706853038245 RFvsST 218049 829541507 829323459 no 306.346031731743 TraesCS3B01G097000 chr3B_64706452 chr3B 64706452 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 64700982 64706132 5151 5 0.09706853038245 RFvsST 218049 829541507 829323459 no 306.346031731743 TraesCS3B01G097000 chr3B_64703830 chr3B 64703830 C C T T 4 synonymous_variant LOW transcript unique_Triplet 64700982 64706132 5151 5 0.09706853038245 RFvsST 218049 829541507 829323459 no 306.346031731743 TraesCS3B01G098500 chr3B_66052281 chr3B 66052281 C C T T 4 missense_variant MODERATE transcript non_Triplet 66050576 66055245 4670 1 0.0214132762312634 RFvsST 218049 829541507 829323459 no 96.7601685579192 TraesCS3B01G098700 chr3B_66181006 chr3B 66181006 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 66180508 66182141 1634 2 0.122399020807834 RFvsST 218049 829541507 829323459 no 1696.49160291406 TraesCS3B01G098700 chr3B_66181074 chr3B 66181074 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 66180508 66182141 1634 2 0.122399020807834 RFvsST 218049 829541507 829323459 no 1696.49160291406 TraesCS3B01G098800 chr3B_66181594 chr3B 66181594 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66186166 66190004 3839 4 0.104193800468872 RFvsST 218049 829541507 829323459 no 294.896894347156 TraesCS3B01G098800 chr3B_66181625 chr3B 66181625 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66186166 66190004 3839 4 0.104193800468872 RFvsST 218049 829541507 829323459 no 294.896894347156 TraesCS3B01G098800 chr3B_66181267 chr3B 66181267 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66186166 66190004 3839 4 0.104193800468872 RFvsST 218049 829541507 829323459 no 294.896894347156 TraesCS3B01G098800 chr3B_66181310 chr3B 66181310 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66186166 66190004 3839 4 0.104193800468872 RFvsST 218049 829541507 829323459 no 294.896894347156 TraesCS3B01G099800 chr3B_66679647 chr3B 66679647 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 66678856 66679640 785 1 0.127388535031847 RFvsST 218049 829541507 829323459 no 341.547499056173 TraesCS3B01G099900 chr3B_66707185 chr3B 66707185 G G A A 4 missense_variant MODERATE transcript non_Triplet 66707100 66711062 3963 2 0.0504668180671209 RFvsST 218049 829541507 829323459 no 313.110201312853 TraesCS3B01G099900 chr3B_66709457 chr3B 66709457 C C G G 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 66707100 66711062 3963 2 0.0504668180671209 RFvsST 218049 829541507 829323459 no 313.110201312853 TraesCS3B01G100000 chr3B_66709110 chr3B 66709110 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 66712861 66714696 1836 2 0.108932461873638 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G100000 chr3B_66708885 chr3B 66708885 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 66712861 66714696 1836 2 0.108932461873638 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G100100 chr3B_66798573 chr3B 66798573 G G A A 4 missense_variant MODERATE transcript non_Triplet 66797963 66798741 779 1 0.128369704749679 RFvsST 218049 829541507 829323459 no 170.142698571748 TraesCS3B01G100400 chr3B_66864981 chr3B 66864981 G G A A 4 missense_variant MODERATE transcript non_Triplet 66864673 66871186 6514 2 0.0307031010132023 RFvsST 218049 829541507 829323459 no 105.213946522612 TraesCS3B01G100400 chr3B_66870472 chr3B 66870472 G C G C 3 missense_variant MODERATE transcript non_Triplet 66864673 66871186 6514 2 0.0307031010132023 RFvsST 218049 829541507 829323459 no 105.213946522612 TraesCS3B01G100700 chr3B_66954023 chr3B 66954023 G G T T 4 missense_variant MODERATE transcript unique_Triplet 66953760 66957963 4204 1 0.0237868696479543 RFvsST 218049 829541507 829323459 no 91.4956892479691 TraesCS3B01G100800 chr3B_67062480 chr3B 67062480 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 67061014 67062452 1439 1 0.0694927032661571 RFvsST 218049 829541507 829323459 no 305.001758939263 TraesCS3B01G101000 chr3B_67942455 chr3B 67942455 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 67944542 67945714 1173 1 0.0852514919011083 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G101900 chr3B_68590601 chr3B 68590601 C A C A 3 missense_variant MODERATE transcript unique_Triplet 68588462 68591503 3042 1 0.0328731097961867 RFvsST 218049 829541507 829323459 no 61.9480258359762 TraesCS3B01G102200 chr3B_68883451 chr3B 68883451 T A T A 3 missense_variant MODERATE transcript unique_Triplet 68881524 68884363 2840 1 0.0352112676056338 RFvsST 218049 829541507 829323459 no 7.25786910378501 TraesCS3B01G102300 chr3B_68903737 chr3B 68903737 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 68899136 68902319 3184 2 0.0628140703517588 RFvsST 218049 829541507 829323459 no 191.076127160729 TraesCS3B01G102300 chr3B_68899217 chr3B 68899217 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 68899136 68902319 3184 2 0.0628140703517588 RFvsST 218049 829541507 829323459 no 191.076127160729 TraesCS3B01G102600 chr3B_69359597 chr3B 69359597 C C A A 4 missense_variant MODERATE transcript unique_Triplet 69352086 69359818 7733 1 0.0129315918789603 RFvsST 218049 829541507 829323459 no 84.6759433419139 TraesCS3B01G102700 chr3B_69358979 chr3B 69358979 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G102700 chr3B_69358867 chr3B 69358867 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G102700 chr3B_69359362 chr3B 69359362 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G102700 chr3B_69358765 chr3B 69358765 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G102700 chr3B_69358879 chr3B 69358879 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G102700 chr3B_69358942 chr3B 69358942 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 69361152 69361943 792 6 0.757575757575758 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G103200 chr3B_69818458 chr3B 69818458 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69811561 69818149 6589 2 0.0303536196691455 RFvsST 218049 829541507 829323459 no 333.587368083374 TraesCS3B01G103200 chr3B_69814271 chr3B 69814271 A A G G 4 synonymous_variant LOW transcript unique_Triplet 69811561 69818149 6589 2 0.0303536196691455 RFvsST 218049 829541507 829323459 no 333.587368083374 TraesCS3B01G104400 chr3B_70871497 chr3B 70871497 C C G G 4 missense_variant MODERATE transcript unique_Triplet 70865752 70874046 8295 1 0.0120554550934298 RFvsST 218049 829541507 829323459 no 63.0331628894725 TraesCS3B01G106000 chr3B_71807429 chr3B 71807429 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 71803991 71804968 978 1 0.102249488752556 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G106100 chr3B_71807587 chr3B 71807587 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 71807440 71812390 4951 1 0.0201979398101394 RFvsST 218049 829541507 829323459 no 60.0520901476614 TraesCS3B01G110500 chr3B_76432768 chr3B 76432768 C G C G 3 missense_variant MODERATE transcript non_Triplet 76432470 76437447 4978 1 0.0200883889112093 RFvsST 218049 829541507 829323459 no 217.675359504374 TraesCS3B01G110900 chr3B_76508534 chr3B 76508534 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 76506170 76514851 8682 1 0.0115180833909238 RFvsST 218049 829541507 829323459 no 176.955531379812 TraesCS3B01G111500 chr3B_77691750 chr3B 77691750 C C G G 4 missense_variant MODERATE transcript unique_Triplet 77688427 77691888 3462 2 0.0577700751010976 RFvsST 218049 829541507 829323459 no 62.9139843391027 TraesCS3B01G111500 chr3B_77688966 chr3B 77688966 C C T T 4 synonymous_variant LOW transcript unique_Triplet 77688427 77691888 3462 2 0.0577700751010976 RFvsST 218049 829541507 829323459 no 62.9139843391027 TraesCS3B01G112000 chr3B_78389854 chr3B 78389854 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 78392181 78394180 2000 1 0.05 RFvsST 218049 829541507 829323459 no 1364.39485596903 TraesCS3B01G112600 chr3B_78747153 chr3B 78747153 T T C C 4 missense_variant MODERATE transcript unique_Triplet 78741404 78748121 6718 1 0.0148853825543316 RFvsST 218049 829541507 829323459 no 85.3930572646701 TraesCS3B01G112800 chr3B_79122965 chr3B 79122965 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 79119956 79123114 3159 3 0.0949667616334283 RFvsST 218049 829541507 829323459 no 322.538046836084 TraesCS3B01G112800 chr3B_79122947 chr3B 79122947 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 79119956 79123114 3159 3 0.0949667616334283 RFvsST 218049 829541507 829323459 no 322.538046836084 TraesCS3B01G112800 chr3B_79122924 chr3B 79122924 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 79119956 79123114 3159 3 0.0949667616334283 RFvsST 218049 829541507 829323459 no 322.538046836084 TraesCS3B01G112900 chr3B_79128842 chr3B 79128842 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 79124595 79128314 3720 1 0.0268817204301075 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G113200 chr3B_79289530 chr3B 79289530 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 79288566 79290045 1480 1 0.0675675675675676 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G113500 chr3B_79468378 chr3B 79468378 A A G G 4 splice_donor_variant&intron_variant HIGH transcript unique_Triplet 79467499 79469932 2434 2 0.0821692686935086 RFvsST 218049 829541507 829323459 no 348.421145632387 TraesCS3B01G113500 chr3B_79468482 chr3B 79468482 T T A A 4 missense_variant MODERATE transcript unique_Triplet 79467499 79469932 2434 2 0.0821692686935086 RFvsST 218049 829541507 829323459 no 348.421145632387 TraesCS3B01G113800 chr3B_79953374 chr3B 79953374 A A G G 4 missense_variant MODERATE transcript non_Triplet 79947149 79954165 7017 1 0.0142511044605957 RFvsST 218049 829541507 829323459 no 56.5066900228034 TraesCS3B01G114700 chr3B_81053444 chr3B 81053444 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 81050045 81052329 2285 2 0.087527352297593 RFvsST 218049 829541507 829323459 no 120.296650436664 TraesCS3B01G114700 chr3B_81050289 chr3B 81050289 T T C C 4 missense_variant MODERATE transcript non_Triplet 81050045 81052329 2285 2 0.087527352297593 RFvsST 218049 829541507 829323459 no 120.296650436664 TraesCS3B01G114800 chr3B_81167075 chr3B 81167075 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 81167252 81171682 4431 1 0.0225682690137666 RFvsST 218049 829541507 829323459 no 23.8795456753074 TraesCS3B01G123100 chr3B_94856676 chr3B 94856676 A A C C 4 missense_variant MODERATE transcript unique_Triplet 94856164 94857165 1002 1 0.0998003992015968 RFvsST 218049 829541507 829323459 no 101.082513666064 TraesCS3B01G123600 chr3B_95462321 chr3B 95462321 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 95460237 95461962 1726 2 0.115874855156431 RFvsST 218049 829541507 829323459 no 267.573126707381 TraesCS3B01G123600 chr3B_95460046 chr3B 95460046 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 95460237 95461962 1726 2 0.115874855156431 RFvsST 218049 829541507 829323459 no 267.573126707381 TraesCS3B01G123700 chr3B_96071086 chr3B 96071086 C A C A 3 synonymous_variant LOW transcript unique_Triplet 96070880 96071242 363 1 0.275482093663912 RFvsST 218049 829541507 829323459 no 438.628616433551 TraesCS3B01G125400 chr3B_100968106 chr3B 100968106 A G A G 3 missense_variant MODERATE transcript unique_Triplet 100965674 100968400 2727 1 0.0366703337000367 RFvsST 218049 829541507 829323459 no 32.2621389670302 TraesCS3B01G125600 chr3B_101800302 chr3B 101800302 T C T C 3 synonymous_variant LOW transcript unique_Triplet 101799409 101800765 1357 1 0.0736919675755343 RFvsST 218049 829541507 829323459 no 171.207506849446 TraesCS3B01G127700 chr3B_106420740 chr3B 106420740 C T C T 3 missense_variant MODERATE transcript unique_Triplet 106420253 106422543 2291 1 0.0436490615451768 RFvsST 218049 829541507 829323459 no 346.075851901353 TraesCS3B01G128100 chr3B_106974040 chr3B 106974040 T G T G 3 missense_variant MODERATE transcript unique_Triplet 106972110 106974283 2174 3 0.137994480220791 RFvsST 218049 829541507 829323459 no 58.3956444457038 TraesCS3B01G128100 chr3B_106974651 chr3B 106974651 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 106972110 106974283 2174 3 0.137994480220791 RFvsST 218049 829541507 829323459 no 58.3956444457038 TraesCS3B01G128100 chr3B_106975723 chr3B 106975723 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 106972110 106974283 2174 3 0.137994480220791 RFvsST 218049 829541507 829323459 no 58.3956444457038 TraesCS3B01G129300 chr3B_109948269 chr3B 109948269 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 109946410 109947435 1026 1 0.0974658869395711 RFvsST 218049 829541507 829323459 no 37.4427590136631 TraesCS3B01G131400 chr3B_113515179 chr3B 113515179 C T C T 3 synonymous_variant LOW transcript non_Triplet 113515026 113520446 5421 1 0.0184467810367091 RFvsST 218049 829541507 829323459 no 117.099941733778 TraesCS3B01G132300 chr3B_114728597 chr3B 114728597 C C T T 4 missense_variant MODERATE transcript non_Triplet 114728374 114733442 5069 1 0.0197277569540343 RFvsST 218049 829541507 829323459 no 59.3926170638826 TraesCS3B01G132700 chr3B_115215871 chr3B 115215871 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 115215916 115216455 540 1 0.185185185185185 RFvsST 218049 829541507 829323459 no 37.8830974516187 TraesCS3B01G132900 chr3B_115395309 chr3B 115395309 G G A A 4 synonymous_variant LOW transcript non_Triplet 115395207 115395743 537 2 0.37243947858473 RFvsST 218049 829541507 829323459 no 66.4806382582191 TraesCS3B01G132900 chr3B_115395759 chr3B 115395759 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 115395207 115395743 537 2 0.37243947858473 RFvsST 218049 829541507 829323459 no 66.4806382582191 TraesCS3B01G133400 chr3B_115784564 chr3B 115784564 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 115780560 115784488 3929 2 0.0509035377958768 RFvsST 218049 829541507 829323459 no 7773.16265878531 TraesCS3B01G133400 chr3B_115784535 chr3B 115784535 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 115780560 115784488 3929 2 0.0509035377958768 RFvsST 218049 829541507 829323459 no 7773.16265878531 TraesCS3B01G133900 chr3B_116115392 chr3B 116115392 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 116111390 116112713 1324 3 0.226586102719033 RFvsST 218049 829541507 829323459 no 211.028749155692 TraesCS3B01G133900 chr3B_116115543 chr3B 116115543 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 116111390 116112713 1324 3 0.226586102719033 RFvsST 218049 829541507 829323459 no 211.028749155692 TraesCS3B01G133900 chr3B_116112409 chr3B 116112409 G G A A 4 missense_variant MODERATE transcript unique_Triplet 116111390 116112713 1324 3 0.226586102719033 RFvsST 218049 829541507 829323459 no 211.028749155692 TraesCS3B01G134000 chr3B_116115703 chr3B 116115703 G G A A 4 synonymous_variant LOW transcript unique_Triplet 116115571 116121597 6027 1 0.0165920026547204 RFvsST 218049 829541507 829323459 no 44.2567459373964 TraesCS3B01G137900 chr3B_123468393 chr3B 123468393 C C T T 4 synonymous_variant LOW transcript unique_Triplet 123456248 123469787 13540 1 0.00738552437223043 RFvsST 218049 829541507 829323459 no 545.874280503411 TraesCS3B01G140800 chr3B_127292263 chr3B 127292263 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 127289850 127292583 2734 1 0.0365764447695684 RFvsST 218049 829541507 829323459 no 90.4025772473507 TraesCS3B01G143500 chr3B_132385215 chr3B 132385215 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 132386149 132389089 2941 1 0.0340020401224073 RFvsST 218049 829541507 829323459 no 5.68906977033479 TraesCS3B01G145400 chr3B_133819011 chr3B 133819011 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 133811088 133818087 7000 2 0.0285714285714286 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G145400 chr3B_133818802 chr3B 133818802 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 133811088 133818087 7000 2 0.0285714285714286 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G145500 chr3B_133822905 chr3B 133822905 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 133819037 133823584 4548 2 0.0439753737906772 RFvsST 218049 829541507 829323459 no 162.745507215298 TraesCS3B01G145500 chr3B_133819538 chr3B 133819538 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 133819037 133823584 4548 2 0.0439753737906772 RFvsST 218049 829541507 829323459 no 162.745507215298 TraesCS3B01G146400 chr3B_136441562 chr3B 136441562 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 136441603 136447209 5607 2 0.0356696985910469 RFvsST 218049 829541507 829323459 no 88.4549117772269 TraesCS3B01G146400 chr3B_136447107 chr3B 136447107 C C T T 4 synonymous_variant LOW transcript unique_Triplet 136441603 136447209 5607 2 0.0356696985910469 RFvsST 218049 829541507 829323459 no 88.4549117772269 TraesCS3B01G147000 chr3B_137322061 chr3B 137322061 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 137322401 137325116 2716 1 0.0368188512518409 RFvsST 218049 829541507 829323459 no 160.511765154015 TraesCS3B01G147100 chr3B_137326565 chr3B 137326565 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 137326450 137328901 2452 1 0.0407830342577488 RFvsST 218049 829541507 829323459 no 80.5897880028713 TraesCS3B01G147200 chr3B_137603450 chr3B 137603450 C C T T 4 missense_variant MODERATE transcript unique_Triplet 137603143 137604300 1158 1 0.0863557858376511 RFvsST 218049 829541507 829323459 no 326.687469774069 TraesCS3B01G147500 chr3B_138503039 chr3B 138503039 G G A A 4 missense_variant MODERATE transcript unique_Triplet 138499966 138503523 3558 1 0.0281056773468241 RFvsST 218049 829541507 829323459 no 27.7812887495257 TraesCS3B01G147600 chr3B_139034851 chr3B 139034851 G A G A 3 synonymous_variant LOW transcript unique_Triplet 139032314 139036929 4616 1 0.0216637781629116 RFvsST 218049 829541507 829323459 no 76.6000818725778 TraesCS3B01G148100 chr3B_139408714 chr3B 139408714 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 139409730 139415381 5652 1 0.0176928520877565 RFvsST 218049 829541507 829323459 no 551.452371585458 TraesCS3B01G149200 chr3B_140688620 chr3B 140688620 T T C C 4 missense_variant MODERATE transcript unique_Triplet 140686255 140689082 2828 3 0.106082036775106 RFvsST 218049 829541507 829323459 no 270.142625630304 TraesCS3B01G149200 chr3B_140688768 chr3B 140688768 C C T T 4 synonymous_variant LOW transcript unique_Triplet 140686255 140689082 2828 3 0.106082036775106 RFvsST 218049 829541507 829323459 no 270.142625630304 TraesCS3B01G149200 chr3B_140686863 chr3B 140686863 C C T T 4 synonymous_variant LOW transcript unique_Triplet 140686255 140689082 2828 3 0.106082036775106 RFvsST 218049 829541507 829323459 no 270.142625630304 TraesCS3B01G149300 chr3B_140853443 chr3B 140853443 T T C C 4 synonymous_variant LOW transcript unique_Triplet 140850279 140854587 4309 2 0.0464144813181713 RFvsST 218049 829541507 829323459 no 261.396766835298 TraesCS3B01G149300 chr3B_140852020 chr3B 140852020 A A G G 4 synonymous_variant LOW transcript unique_Triplet 140850279 140854587 4309 2 0.0464144813181713 RFvsST 218049 829541507 829323459 no 261.396766835298 TraesCS3B01G149800 chr3B_141122869 chr3B 141122869 C C T T 4 synonymous_variant LOW transcript non_Triplet 141120692 141126555 5864 2 0.034106412005457 RFvsST 218049 829541507 829323459 no 181.682857248096 TraesCS3B01G149800 chr3B_141125995 chr3B 141125995 G G A A 4 missense_variant MODERATE transcript non_Triplet 141120692 141126555 5864 2 0.034106412005457 RFvsST 218049 829541507 829323459 no 181.682857248096 TraesCS3B01G153800 chr3B_146185674 chr3B 146185674 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 146181645 146183204 1560 1 0.0641025641025641 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G157200 chr3B_150949737 chr3B 150949737 C C G G 4 missense_variant MODERATE transcript non_Triplet 150942841 150951627 8787 1 0.0113804483896666 RFvsST 218049 829541507 829323459 no 261.592152436347 TraesCS3B01G165800 chr3B_166152414 chr3B 166152414 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 166148220 166152436 4217 1 0.0237135404315864 RFvsST 218049 829541507 829323459 no 68.0698925497195 TraesCS3B01G168000 chr3B_168680421 chr3B 168680421 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 168679564 168683185 3622 1 0.0276090557702927 RFvsST 218049 829541507 829323459 no 2853.83072009403 TraesCS3B01G168300 chr3B_169256926 chr3B 169256926 G G A A 4 missense_variant MODERATE transcript non_Triplet 169255386 169257155 1770 1 0.0564971751412429 RFvsST 218049 829541507 829323459 no 330.200717103565 TraesCS3B01G171500 chr3B_172321735 chr3B 172321735 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 172316441 172319838 3398 1 0.0294290759270159 RFvsST 218049 829541507 829323459 no 30.0875827107724 TraesCS3B01G172400 chr3B_173048438 chr3B 173048438 A A G G 4 synonymous_variant LOW transcript non_Triplet 173044968 173049905 4938 1 0.0202511138112596 RFvsST 218049 829541507 829323459 no 117.979414254523 TraesCS3B01G177500 chr3B_181305073 chr3B 181305073 C C T T 4 synonymous_variant LOW transcript unique_Triplet 181305062 181318727 13666 1 0.00731743011854237 RFvsST 218049 829541507 829323459 no 115.818548445858 TraesCS3B01G179800 chr3B_187586622 chr3B 187586622 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 187586835 187589970 3136 1 0.0318877551020408 RFvsST 218049 829541507 829323459 no 158.856733795203 TraesCS3B01G179900 chr3B_187803144 chr3B 187803144 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 187800820 187803006 2187 2 0.0914494741655235 RFvsST 218049 829541507 829323459 no 772.943039475709 TraesCS3B01G179900 chr3B_187802394 chr3B 187802394 C G C G 3 missense_variant MODERATE transcript unique_Triplet 187800820 187803006 2187 2 0.0914494741655235 RFvsST 218049 829541507 829323459 no 772.943039475709 TraesCS3B01G180000 chr3B_187807469 chr3B 187807469 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 187803348 187804472 1125 1 0.0888888888888889 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G181400 chr3B_189672807 chr3B 189672807 C T C T 3 synonymous_variant LOW transcript unique_Triplet 189664725 189673396 8672 3 0.0345940959409594 RFvsST 218049 829541507 829323459 no 104.762199350607 TraesCS3B01G181400 chr3B_189673192 chr3B 189673192 G A G A 3 missense_variant MODERATE transcript unique_Triplet 189664725 189673396 8672 3 0.0345940959409594 RFvsST 218049 829541507 829323459 no 104.762199350607 TraesCS3B01G181400 chr3B_189664744 chr3B 189664744 C G C G 3 missense_variant MODERATE transcript unique_Triplet 189664725 189673396 8672 3 0.0345940959409594 RFvsST 218049 829541507 829323459 no 104.762199350607 TraesCS3B01G181900 chr3B_190897925 chr3B 190897925 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 190897993 190905712 7720 2 0.0259067357512953 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G181900 chr3B_190899861 chr3B 190899861 T C T C 3 synonymous_variant LOW transcript unique_Triplet 190897993 190905712 7720 2 0.0259067357512953 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G195600 chr3B_222191729 chr3B 222191729 C G C G 3 splice_donor_variant&intron_variant HIGH transcript non_Triplet 222190391 222194032 3642 1 0.0274574409665019 RFvsST 218049 829541507 829323459 no 451.325019298606 TraesCS3B01G197400 chr3B_224427577 chr3B 224427577 G G T T 4 synonymous_variant LOW transcript unique_Triplet 224427391 224428269 879 1 0.113765642775882 RFvsST 218049 829541507 829323459 no 73.3374174321674 TraesCS3B01G197800 chr3B_225172669 chr3B 225172669 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 225172124 225180770 8647 1 0.0115647045217995 RFvsST 218049 829541507 829323459 no 149.27249088493 TraesCS3B01G199000 chr3B_226787541 chr3B 226787541 G G T T 4 missense_variant MODERATE transcript unique_Triplet 226787232 226790114 2883 2 0.0693721817551162 RFvsST 218049 829541507 829323459 no 242.500169328044 TraesCS3B01G199000 chr3B_226787501 chr3B 226787501 C C T T 4 synonymous_variant LOW transcript unique_Triplet 226787232 226790114 2883 2 0.0693721817551162 RFvsST 218049 829541507 829323459 no 242.500169328044 TraesCS3B01G199100 chr3B_227417988 chr3B 227417988 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 227417221 227418954 1734 1 0.0576701268742791 RFvsST 218049 829541507 829323459 no 36.3918128478802 TraesCS3B01G200600 chr3B_229162802 chr3B 229162802 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 229162253 229162793 541 1 0.184842883548983 RFvsST 218049 829541507 829323459 no 51.9286925965651 TraesCS3B01G201100 chr3B_232563856 chr3B 232563856 C T C T 3 synonymous_variant LOW transcript non_Triplet 232563374 232567424 4051 3 0.0740557886941496 RFvsST 218049 829541507 829323459 no 111.02161404567 TraesCS3B01G201100 chr3B_232565314 chr3B 232565314 A A T T 4 intron_variant MODIFIER transcript non_Triplet 232563374 232567424 4051 3 0.0740557886941496 RFvsST 218049 829541507 829323459 no 111.02161404567 TraesCS3B01G201100 chr3B_232564855 chr3B 232564855 C C T T 4 missense_variant MODERATE transcript non_Triplet 232563374 232567424 4051 3 0.0740557886941496 RFvsST 218049 829541507 829323459 no 111.02161404567 TraesCS3B01G201200 chr3B_232634890 chr3B 232634890 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 232634971 232637951 2981 1 0.0335457900033546 RFvsST 218049 829541507 829323459 no 201.514415306491 TraesCS3B01G201500 chr3B_235862830 chr3B 235862830 C T C T 3 missense_variant MODERATE transcript unique_Triplet 235861086 235865903 4818 1 0.020755500207555 RFvsST 218049 829541507 829323459 no 355.001438670775 TraesCS3B01G202400 chr3B_236353872 chr3B 236353872 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 236357283 236361311 4029 1 0.0248200546041201 RFvsST 218049 829541507 829323459 no 43.657581737415 TraesCS3B01G202600 chr3B_236511642 chr3B 236511642 T T C C 4 missense_variant MODERATE transcript unique_Triplet 236498550 236512967 14418 2 0.0138715494520738 RFvsST 218049 829541507 829323459 no 149.690842133488 TraesCS3B01G202600 chr3B_236511583 chr3B 236511583 G A G A 3 synonymous_variant LOW transcript unique_Triplet 236498550 236512967 14418 2 0.0138715494520738 RFvsST 218049 829541507 829323459 no 149.690842133488 TraesCS3B01G202800 chr3B_237108837 chr3B 237108837 C T C T 3 missense_variant MODERATE transcript unique_Triplet 237106299 237110476 4178 3 0.0718046912398277 RFvsST 218049 829541507 829323459 no 156.752677490146 TraesCS3B01G202800 chr3B_237107840 chr3B 237107840 G G A A 4 synonymous_variant LOW transcript unique_Triplet 237106299 237110476 4178 3 0.0718046912398277 RFvsST 218049 829541507 829323459 no 156.752677490146 TraesCS3B01G202800 chr3B_237109514 chr3B 237109514 A A G G 4 missense_variant MODERATE transcript unique_Triplet 237106299 237110476 4178 3 0.0718046912398277 RFvsST 218049 829541507 829323459 no 156.752677490146 TraesCS3B01G204900 chr3B_239884751 chr3B 239884751 T A T A 3 synonymous_variant LOW transcript unique_Triplet 239882447 239884964 2518 2 0.079428117553614 RFvsST 218049 829541507 829323459 no 295.048409489209 TraesCS3B01G204900 chr3B_239884750 chr3B 239884750 C A C A 3 missense_variant MODERATE transcript unique_Triplet 239882447 239884964 2518 2 0.079428117553614 RFvsST 218049 829541507 829323459 no 295.048409489209 TraesCS3B01G205100 chr3B_239895373 chr3B 239895373 C T C T 3 synonymous_variant LOW transcript unique_Triplet 239895220 239895507 288 1 0.347222222222222 RFvsST 218049 829541507 829323459 no 1294.53226817394 TraesCS3B01G205300 chr3B_239908094 chr3B 239908094 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 239902450 239908078 5629 2 0.03553028957186 RFvsST 218049 829541507 829323459 no 12.4748237276601 TraesCS3B01G205300 chr3B_239904535 chr3B 239904535 C T C T 3 synonymous_variant LOW transcript unique_Triplet 239902450 239908078 5629 2 0.03553028957186 RFvsST 218049 829541507 829323459 no 12.4748237276601 TraesCS3B01G205500 chr3B_240266898 chr3B 240266898 G A G A 3 missense_variant MODERATE transcript unique_Triplet 240266841 240273299 6459 1 0.0154822727976467 RFvsST 218049 829541507 829323459 no 190.112059654198 TraesCS3B01G205600 chr3B_240279706 chr3B 240279706 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 240273906 240279522 5617 2 0.0356061954780132 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G205600 chr3B_240269763 chr3B 240269763 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 240273906 240279522 5617 2 0.0356061954780132 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G205700 chr3B_240407975 chr3B 240407975 G G A A 4 missense_variant MODERATE transcript unique_Triplet 240407794 240408195 402 1 0.248756218905473 RFvsST 218049 829541507 829323459 no 23.5956718719259 TraesCS3B01G205900 chr3B_240591592 chr3B 240591592 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 240591799 240597158 5360 4 0.0746268656716418 RFvsST 218049 829541507 829323459 no 155.414552747952 TraesCS3B01G205900 chr3B_240595087 chr3B 240595087 G G A A 4 missense_variant MODERATE transcript non_Triplet 240591799 240597158 5360 4 0.0746268656716418 RFvsST 218049 829541507 829323459 no 155.414552747952 TraesCS3B01G205900 chr3B_240597227 chr3B 240597227 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 240591799 240597158 5360 4 0.0746268656716418 RFvsST 218049 829541507 829323459 no 155.414552747952 TraesCS3B01G205900 chr3B_240591673 chr3B 240591673 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 240591799 240597158 5360 4 0.0746268656716418 RFvsST 218049 829541507 829323459 no 155.414552747952 TraesCS3B01G206500 chr3B_242166212 chr3B 242166212 C T C T 3 missense_variant MODERATE transcript unique_Triplet 242162316 242166238 3923 4 0.101962783583992 RFvsST 218049 829541507 829323459 no 99.9173625098788 TraesCS3B01G206500 chr3B_242166395 chr3B 242166395 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 242162316 242166238 3923 4 0.101962783583992 RFvsST 218049 829541507 829323459 no 99.9173625098788 TraesCS3B01G206500 chr3B_242168670 chr3B 242168670 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 242162316 242166238 3923 4 0.101962783583992 RFvsST 218049 829541507 829323459 no 99.9173625098788 TraesCS3B01G206500 chr3B_242166356 chr3B 242166356 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 242162316 242166238 3923 4 0.101962783583992 RFvsST 218049 829541507 829323459 no 99.9173625098788 TraesCS3B01G207100 chr3B_242746787 chr3B 242746787 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 242746815 242750241 3427 1 0.0291800408520572 RFvsST 218049 829541507 829323459 no 25.1954254077 TraesCS3B01G207600 chr3B_243241740 chr3B 243241740 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 243244135 243246689 2555 1 0.0391389432485323 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G208200 chr3B_244237122 chr3B 244237122 G G T T 4 missense_variant MODERATE transcript unique_Triplet 244235387 244237717 2331 3 0.128700128700129 RFvsST 218049 829541507 829323459 no 154.275548822453 TraesCS3B01G208200 chr3B_244235362 chr3B 244235362 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244235387 244237717 2331 3 0.128700128700129 RFvsST 218049 829541507 829323459 no 154.275548822453 TraesCS3B01G208200 chr3B_244236710 chr3B 244236710 C C T T 4 synonymous_variant LOW transcript unique_Triplet 244235387 244237717 2331 3 0.128700128700129 RFvsST 218049 829541507 829323459 no 154.275548822453 TraesCS3B01G208300 chr3B_244386935 chr3B 244386935 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244383553 244386257 2705 2 0.0739371534195933 RFvsST 218049 829541507 829323459 no 273.107809875302 TraesCS3B01G208300 chr3B_244383555 chr3B 244383555 A A G G 4 stop_lost&splice_region_variant HIGH transcript unique_Triplet 244383553 244386257 2705 2 0.0739371534195933 RFvsST 218049 829541507 829323459 no 273.107809875302 TraesCS3B01G208500 chr3B_244624796 chr3B 244624796 A A G G 4 missense_variant MODERATE transcript non_Triplet 244623289 244625782 2494 1 0.0400962309542903 RFvsST 218049 829541507 829323459 no 104.865200511608 TraesCS3B01G208600 chr3B_244660374 chr3B 244660374 G A G A 3 missense_variant MODERATE transcript unique_Triplet 244658626 244661478 2853 2 0.0701016473887136 RFvsST 218049 829541507 829323459 no 20.9696197819885 TraesCS3B01G208600 chr3B_244660313 chr3B 244660313 A A G G 4 missense_variant MODERATE transcript unique_Triplet 244658626 244661478 2853 2 0.0701016473887136 RFvsST 218049 829541507 829323459 no 20.9696197819885 TraesCS3B01G209100 chr3B_245357968 chr3B 245357968 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 245358091 245359538 1448 1 0.069060773480663 RFvsST 218049 829541507 829323459 no 96.9016918595398 TraesCS3B01G210200 chr3B_246160382 chr3B 246160382 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 246152823 246160041 7219 1 0.0138523341182989 RFvsST 218049 829541507 829323459 no 48.42922021127 TraesCS3B01G210300 chr3B_246161230 chr3B 246161230 T C T C 3 synonymous_variant LOW transcript unique_Triplet 246160462 246163673 3212 1 0.0311332503113325 RFvsST 218049 829541507 829323459 no 408.993668390133 TraesCS3B01G211200 chr3B_250279360 chr3B 250279360 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 250274378 250278433 4056 2 0.0493096646942801 RFvsST 218049 829541507 829323459 no 295.840480898706 TraesCS3B01G211200 chr3B_250274163 chr3B 250274163 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 250274378 250278433 4056 2 0.0493096646942801 RFvsST 218049 829541507 829323459 no 295.840480898706 TraesCS3B01G211600 chr3B_250812538 chr3B 250812538 C C T T 4 missense_variant MODERATE transcript unique_Triplet 250803139 250812577 9439 1 0.0105943426210404 RFvsST 218049 829541507 829323459 no 38.7944754003751 TraesCS3B01G211700 chr3B_250819452 chr3B 250819452 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 250817962 250819389 1428 2 0.140056022408964 RFvsST 218049 829541507 829323459 no 450.768076764842 TraesCS3B01G211700 chr3B_250819114 chr3B 250819114 C T C T 3 synonymous_variant LOW transcript unique_Triplet 250817962 250819389 1428 2 0.140056022408964 RFvsST 218049 829541507 829323459 no 450.768076764842 TraesCS3B01G211800 chr3B_250979298 chr3B 250979298 G A G A 3 missense_variant MODERATE transcript unique_Triplet 250960822 250979346 18525 2 0.0107962213225371 RFvsST 218049 829541507 829323459 no 11.2609465812495 TraesCS3B01G211800 chr3B_250963421 chr3B 250963421 A G A G 3 missense_variant MODERATE transcript unique_Triplet 250960822 250979346 18525 2 0.0107962213225371 RFvsST 218049 829541507 829323459 no 11.2609465812495 TraesCS3B01G212100 chr3B_251651428 chr3B 251651428 A A G G 4 missense_variant MODERATE transcript unique_Triplet 251644701 251653918 9218 2 0.0216966804078976 RFvsST 218049 829541507 829323459 no 71.3646595952262 TraesCS3B01G212100 chr3B_251651960 chr3B 251651960 C C T T 4 synonymous_variant LOW transcript unique_Triplet 251644701 251653918 9218 2 0.0216966804078976 RFvsST 218049 829541507 829323459 no 71.3646595952262 TraesCS3B01G214500 chr3B_254844514 chr3B 254844514 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 254838058 254848987 10930 2 0.0182982616651418 RFvsST 218049 829541507 829323459 no 8.75147777701471 TraesCS3B01G214500 chr3B_254840608 chr3B 254840608 T T C C 4 missense_variant MODERATE transcript unique_Triplet 254838058 254848987 10930 2 0.0182982616651418 RFvsST 218049 829541507 829323459 no 8.75147777701471 TraesCS3B01G214900 chr3B_255984005 chr3B 255984005 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 255984200 255991541 7342 1 0.0136202669572324 RFvsST 218049 829541507 829323459 no 46.6586342650266 TraesCS3B01G218600 chr3B_261886771 chr3B 261886771 G G A A 4 synonymous_variant LOW transcript unique_Triplet 261880058 261887619 7562 1 0.0132240148108966 RFvsST 218049 829541507 829323459 no 145.748877249022 TraesCS3B01G219200 chr3B_263273913 chr3B 263273913 T C T C 3 synonymous_variant LOW transcript unique_Triplet 263260177 263275873 15697 2 0.0127412881442314 RFvsST 218049 829541507 829323459 no 88.6922367898587 TraesCS3B01G219200 chr3B_263263121 chr3B 263263121 A A G G 4 missense_variant MODERATE transcript unique_Triplet 263260177 263275873 15697 2 0.0127412881442314 RFvsST 218049 829541507 829323459 no 88.6922367898587 TraesCS3B01G220000 chr3B_267227011 chr3B 267227011 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 267227164 267239731 12568 1 0.00795671546785487 RFvsST 218049 829541507 829323459 no 24.8553987700562 TraesCS3B01G222400 chr3B_283604560 chr3B 283604560 T T C C 4 missense_variant MODERATE transcript non_Triplet 283586774 283605066 18293 1 0.00546657191275351 RFvsST 218049 829541507 829323459 no 706.301931769917 TraesCS3B01G226300 chr3B_314351968 chr3B 314351968 C C A A 4 missense_variant MODERATE transcript non_Triplet 314350607 314356985 6379 1 0.0156764383132152 RFvsST 218049 829541507 829323459 no 11.4761990761968 TraesCS3B01G226600 chr3B_316622363 chr3B 316622363 T C T C 3 missense_variant MODERATE transcript unique_Triplet 316611144 316623019 11876 1 0.00842034355001684 RFvsST 218049 829541507 829323459 no 46.9574629119617 TraesCS3B01G231400 chr3B_349942742 chr3B 349942742 C T C T 3 missense_variant MODERATE transcript non_Triplet 349934628 349947269 12642 1 0.00791014080050625 RFvsST 218049 829541507 829323459 no 183.43753856771 TraesCS3B01G231900 chr3B_352235499 chr3B 352235499 C C T T 4 missense_variant MODERATE transcript non_Triplet 352234065 352244597 10533 1 0.00949397132820659 RFvsST 218049 829541507 829323459 no 33.7191295742366 TraesCS3B01G234000 chr3B_364542782 chr3B 364542782 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 364539050 364546518 7469 1 0.0133886731824876 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G235000 chr3B_367676374 chr3B 367676374 G G C C 4 synonymous_variant LOW transcript unique_Triplet 367675849 367680322 4474 2 0.0447027268663388 RFvsST 218049 829541507 829323459 no 400.147384429213 TraesCS3B01G235000 chr3B_367679858 chr3B 367679858 C G C G 3 missense_variant MODERATE transcript unique_Triplet 367675849 367680322 4474 2 0.0447027268663388 RFvsST 218049 829541507 829323459 no 400.147384429213 TraesCS3B01G235200 chr3B_368102511 chr3B 368102511 A G A G 3 missense_variant MODERATE transcript non_Triplet 368090159 368103261 13103 5 0.0381592001831642 RFvsST 218049 829541507 829323459 no 10.4569780575842 TraesCS3B01G235200 chr3B_368090158 chr3B 368090158 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 368090159 368103261 13103 5 0.0381592001831642 RFvsST 218049 829541507 829323459 no 10.4569780575842 TraesCS3B01G235200 chr3B_368090763 chr3B 368090763 G G A A 4 missense_variant MODERATE transcript non_Triplet 368090159 368103261 13103 5 0.0381592001831642 RFvsST 218049 829541507 829323459 no 10.4569780575842 TraesCS3B01G235200 chr3B_368103423 chr3B 368103423 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 368090159 368103261 13103 5 0.0381592001831642 RFvsST 218049 829541507 829323459 no 10.4569780575842 TraesCS3B01G235200 chr3B_368090974 chr3B 368090974 G G A A 4 synonymous_variant LOW transcript non_Triplet 368090159 368103261 13103 5 0.0381592001831642 RFvsST 218049 829541507 829323459 no 10.4569780575842 TraesCS3B01G235400 chr3B_368115998 chr3B 368115998 C T C T 3 missense_variant MODERATE transcript non_Triplet 368115717 368116106 390 1 0.256410256410256 RFvsST 218049 829541507 829323459 no 46.725892943436 TraesCS3B01G235600 chr3B_368611945 chr3B 368611945 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 368593222 368611149 17928 1 0.00557786702365016 RFvsST 218049 829541507 829323459 no 490.132032625092 TraesCS3B01G236700 chr3B_370164987 chr3B 370164987 C C T T 4 synonymous_variant LOW transcript unique_Triplet 370135909 370165811 29903 1 0.00334414607230044 RFvsST 218049 829541507 829323459 no 63.3519616183761 TraesCS3B01G237000 chr3B_370929962 chr3B 370929962 G G A A 4 missense_variant MODERATE transcript unique_Triplet 370929948 370937327 7380 1 0.013550135501355 RFvsST 218049 829541507 829323459 no 247.432169680917 TraesCS3B01G237400 chr3B_372242302 chr3B 372242302 C C A A 4 synonymous_variant LOW transcript unique_Triplet 372241887 372247682 5796 1 0.0172532781228433 RFvsST 218049 829541507 829323459 no 659.88780602431 TraesCS3B01G237800 chr3B_373133501 chr3B 373133501 T C T C 3 missense_variant MODERATE transcript unique_Triplet 373131085 373134429 3345 1 0.0298953662182362 RFvsST 218049 829541507 829323459 no 72.1258479823308 TraesCS3B01G239100 chr3B_377418920 chr3B 377418920 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 377418979 377422751 3773 1 0.0265041081367612 RFvsST 218049 829541507 829323459 no 235.128266473903 TraesCS3B01G239300 chr3B_377432637 chr3B 377432637 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 377427243 377432616 5374 2 0.0372162262746558 RFvsST 218049 829541507 829323459 no 87.5754982589026 TraesCS3B01G239300 chr3B_377427523 chr3B 377427523 T A T A 3 missense_variant MODERATE transcript unique_Triplet 377427243 377432616 5374 2 0.0372162262746558 RFvsST 218049 829541507 829323459 no 87.5754982589026 TraesCS3B01G239400 chr3B_377710899 chr3B 377710899 C G C G 3 missense_variant MODERATE transcript unique_Triplet 377710607 377712199 1593 1 0.0627746390458255 RFvsST 218049 829541507 829323459 no 200.451933932744 TraesCS3B01G239700 chr3B_378131560 chr3B 378131560 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 378127965 378141760 13796 1 0.00724847781965787 RFvsST 218049 829541507 829323459 no 157.762464778835 TraesCS3B01G239900 chr3B_378456809 chr3B 378456809 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 378459332 378461830 2499 3 0.120048019207683 RFvsST 218049 829541507 829323459 no 8.37672714779432 TraesCS3B01G239900 chr3B_378457214 chr3B 378457214 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 378459332 378461830 2499 3 0.120048019207683 RFvsST 218049 829541507 829323459 no 8.37672714779432 TraesCS3B01G239900 chr3B_378456955 chr3B 378456955 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 378459332 378461830 2499 3 0.120048019207683 RFvsST 218049 829541507 829323459 no 8.37672714779432 TraesCS3B01G240000 chr3B_378688317 chr3B 378688317 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 378687401 378691428 4028 1 0.0248262164846077 RFvsST 218049 829541507 829323459 no 334.569550957006 TraesCS3B01G240100 chr3B_378726089 chr3B 378726089 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 378720197 378722909 2713 1 0.0368595650571323 RFvsST 218049 829541507 829323459 no 175.570448657329 TraesCS3B01G240900 chr3B_379995020 chr3B 379995020 C T C T 3 missense_variant MODERATE transcript unique_Triplet 379994706 380001343 6638 1 0.0150647785477553 RFvsST 218049 829541507 829323459 no 482.044244241094 TraesCS3B01G244300 chr3B_386383114 chr3B 386383114 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 386376887 386383526 6640 1 0.0150602409638554 RFvsST 218049 829541507 829323459 no 235.372016639548 TraesCS3B01G251500 chr3B_403111749 chr3B 403111749 C T C T 3 missense_variant MODERATE transcript unique_Triplet 403104612 403112210 7599 1 0.013159626266614 RFvsST 218049 829541507 829323459 no 272.257660416675 TraesCS3B01G256600 chr3B_414014175 chr3B 414014175 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 414014586 414018969 4384 2 0.0456204379562044 RFvsST 218049 829541507 829323459 no 421.376461628566 TraesCS3B01G256600 chr3B_414017414 chr3B 414017414 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 414014586 414018969 4384 2 0.0456204379562044 RFvsST 218049 829541507 829323459 no 421.376461628566 TraesCS3B01G256700 chr3B_414020387 chr3B 414020387 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 414020367 414026235 5869 3 0.0511160333958085 RFvsST 218049 829541507 829323459 no 181.807075074538 TraesCS3B01G256700 chr3B_414020417 chr3B 414020417 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 414020367 414026235 5869 3 0.0511160333958085 RFvsST 218049 829541507 829323459 no 181.807075074538 TraesCS3B01G256700 chr3B_414020618 chr3B 414020618 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 414020367 414026235 5869 3 0.0511160333958085 RFvsST 218049 829541507 829323459 no 181.807075074538 TraesCS3B01G256800 chr3B_414186367 chr3B 414186367 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 414182192 414186194 4003 3 0.0749437921558831 RFvsST 218049 829541507 829323459 no 529.363640053396 TraesCS3B01G256800 chr3B_414182104 chr3B 414182104 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 414182192 414186194 4003 3 0.0749437921558831 RFvsST 218049 829541507 829323459 no 529.363640053396 TraesCS3B01G256800 chr3B_414186315 chr3B 414186315 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 414182192 414186194 4003 3 0.0749437921558831 RFvsST 218049 829541507 829323459 no 529.363640053396 TraesCS3B01G257700 chr3B_415758991 chr3B 415758991 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 415758410 415758913 504 1 0.198412698412698 RFvsST 218049 829541507 829323459 no 1527.21191602683 TraesCS3B01G258000 chr3B_415932924 chr3B 415932924 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415931757 chr3B 415931757 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415932504 chr3B 415932504 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415930115 chr3B 415930115 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415930193 chr3B 415930193 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415925193 chr3B 415925193 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415932901 chr3B 415932901 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258000 chr3B_415929373 chr3B 415929373 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 415925189 415936937 11749 8 0.0680909013533067 RFvsST 218049 829541507 829323459 no 267.887379209737 TraesCS3B01G258400 chr3B_416135792 chr3B 416135792 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 416135258 416135956 699 1 0.143061516452074 RFvsST 218049 829541507 829323459 no 379.720667646351 TraesCS3B01G258700 chr3B_416283216 chr3B 416283216 G G A A 4 missense_variant MODERATE transcript unique_Triplet 416282273 416286495 4223 2 0.0473596968979399 RFvsST 218049 829541507 829323459 no 102.885598083485 TraesCS3B01G258700 chr3B_416282291 chr3B 416282291 G G A A 4 synonymous_variant LOW transcript unique_Triplet 416282273 416286495 4223 2 0.0473596968979399 RFvsST 218049 829541507 829323459 no 102.885598083485 TraesCS3B01G259000 chr3B_416693249 chr3B 416693249 C C T T 4 intron_variant MODIFIER transcript nonUnique_Triplet 416690816 416694953 4138 2 0.0483325277912035 RFvsST 218049 829541507 829323459 no 148.050134062926 TraesCS3B01G259000 chr3B_416692957 chr3B 416692957 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 416690816 416694953 4138 2 0.0483325277912035 RFvsST 218049 829541507 829323459 no 148.050134062926 TraesCS3B01G259500 chr3B_417373102 chr3B 417373102 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 417374534 417376305 1772 1 0.0564334085778781 RFvsST 218049 829541507 829323459 no 100.332380320117 TraesCS3B01G260300 chr3B_418058601 chr3B 418058601 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 418056168 418062295 6128 1 0.0163185378590078 RFvsST 218049 829541507 829323459 no 20.7703158460046 TraesCS3B01G263100 chr3B_421675616 chr3B 421675616 C A C A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 421668850 421675505 6656 2 0.0300480769230769 RFvsST 218049 829541507 829323459 no 36.3764020366186 TraesCS3B01G263100 chr3B_421671433 chr3B 421671433 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 421668850 421675505 6656 2 0.0300480769230769 RFvsST 218049 829541507 829323459 no 36.3764020366186 TraesCS3B01G265400 chr3B_424792590 chr3B 424792590 G G T T 4 synonymous_variant LOW transcript unique_Triplet 424790470 424792773 2304 1 0.0434027777777778 RFvsST 218049 829541507 829323459 no 65.8120284201533 TraesCS3B01G268500 chr3B_431989842 chr3B 431989842 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 431989396 431990221 826 1 0.121065375302663 RFvsST 218049 829541507 829323459 no 68.892655512091 TraesCS3B01G269500 chr3B_434059309 chr3B 434059309 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 434052106 434065260 13155 2 0.0152033447358419 RFvsST 218049 829541507 829323459 no 557.169174625384 TraesCS3B01G269500 chr3B_434052369 chr3B 434052369 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 434052106 434065260 13155 2 0.0152033447358419 RFvsST 218049 829541507 829323459 no 557.169174625384 TraesCS3B01G270500 chr3B_435959098 chr3B 435959098 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 435958756 435960913 2158 1 0.046339202965709 RFvsST 218049 829541507 829323459 no 52.8981334671589 TraesCS3B01G272000 chr3B_437823999 chr3B 437823999 C T C T 3 synonymous_variant LOW transcript unique_Triplet 437821083 437824154 3072 1 0.0325520833333333 RFvsST 218049 829541507 829323459 no 19.6105158656428 TraesCS3B01G273900 chr3B_440885501 chr3B 440885501 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 440876730 440889414 12685 1 0.00788332676389436 RFvsST 218049 829541507 829323459 no 651.509621297839 TraesCS3B01G275600 chr3B_445588083 chr3B 445588083 G G T T 4 missense_variant MODERATE transcript unique_Triplet 445578361 445588532 10172 1 0.00983090837593394 RFvsST 218049 829541507 829323459 no 88.2564073841485 TraesCS3B01G276600 chr3B_446694865 chr3B 446694865 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 446690381 446693671 3291 1 0.0303859009419629 RFvsST 218049 829541507 829323459 no 31.6097188244234 TraesCS3B01G281400 chr3B_452103444 chr3B 452103444 A A G G 4 synonymous_variant LOW transcript unique_Triplet 452103168 452104782 1615 1 0.0619195046439629 RFvsST 218049 829541507 829323459 no 191.752034465719 TraesCS3B01G281500 chr3B_452107804 chr3B 452107804 G G A A 4 synonymous_variant LOW transcript unique_Triplet 452107512 452113288 5777 3 0.0519300675090878 RFvsST 218049 829541507 829323459 no 175.493549975675 TraesCS3B01G281500 chr3B_452107771 chr3B 452107771 A A G G 4 synonymous_variant LOW transcript unique_Triplet 452107512 452113288 5777 3 0.0519300675090878 RFvsST 218049 829541507 829323459 no 175.493549975675 TraesCS3B01G281500 chr3B_452113302 chr3B 452113302 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 452107512 452113288 5777 3 0.0519300675090878 RFvsST 218049 829541507 829323459 no 175.493549975675 TraesCS3B01G281800 chr3B_452491376 chr3B 452491376 C C G G 4 missense_variant MODERATE transcript non_Triplet 452489945 452491600 1656 2 0.120772946859903 RFvsST 218049 829541507 829323459 no 161.421092098598 TraesCS3B01G281800 chr3B_452490725 chr3B 452490725 C C T T 4 synonymous_variant LOW transcript non_Triplet 452489945 452491600 1656 2 0.120772946859903 RFvsST 218049 829541507 829323459 no 161.421092098598 TraesCS3B01G282400 chr3B_452721925 chr3B 452721925 T T C C 4 missense_variant MODERATE transcript non_Triplet 452721561 452722235 675 1 0.148148148148148 RFvsST 218049 829541507 829323459 no 117.457930371475 TraesCS3B01G282500 chr3B_452722242 chr3B 452722242 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 452725303 452725977 675 2 0.296296296296296 RFvsST 218049 829541507 829323459 no 205.599220433307 TraesCS3B01G282500 chr3B_452725392 chr3B 452725392 A A G G 4 synonymous_variant LOW transcript non_Triplet 452725303 452725977 675 2 0.296296296296296 RFvsST 218049 829541507 829323459 no 205.599220433307 TraesCS3B01G283500 chr3B_454645937 chr3B 454645937 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 454649538 454650322 785 2 0.254777070063694 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G283500 chr3B_454645941 chr3B 454645941 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 454649538 454650322 785 2 0.254777070063694 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G284200 chr3B_455065669 chr3B 455065669 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 455064874 455065131 258 1 0.387596899224806 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G285500 chr3B_457013931 chr3B 457013931 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457025462 chr3B 457025462 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457025213 chr3B 457025213 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457014285 chr3B 457014285 C C T T 4 missense_variant MODERATE transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457014438 chr3B 457014438 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457026115 chr3B 457026115 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457021564 chr3B 457021564 G G A A 4 missense_variant MODERATE transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457021096 chr3B 457021096 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457022206 chr3B 457022206 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285500 chr3B_457025738 chr3B 457025738 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 457014052 457026782 12731 10 0.0785484251040767 RFvsST 218049 829541507 829323459 no 525.459921370055 TraesCS3B01G285700 chr3B_457208180 chr3B 457208180 C C G G 4 missense_variant MODERATE transcript unique_Triplet 457207598 457208869 1272 1 0.0786163522012579 RFvsST 218049 829541507 829323459 no 595.178265293996 TraesCS3B01G285800 chr3B_457575636 chr3B 457575636 G G A A 4 synonymous_variant LOW transcript unique_Triplet 457572098 457576429 4332 4 0.0923361034164358 RFvsST 218049 829541507 829323459 no 97.6198971574178 TraesCS3B01G285800 chr3B_457576384 chr3B 457576384 C C T T 4 missense_variant MODERATE transcript unique_Triplet 457572098 457576429 4332 4 0.0923361034164358 RFvsST 218049 829541507 829323459 no 97.6198971574178 TraesCS3B01G285800 chr3B_457574949 chr3B 457574949 A A G G 4 synonymous_variant LOW transcript unique_Triplet 457572098 457576429 4332 4 0.0923361034164358 RFvsST 218049 829541507 829323459 no 97.6198971574178 TraesCS3B01G285800 chr3B_457571985 chr3B 457571985 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457572098 457576429 4332 4 0.0923361034164358 RFvsST 218049 829541507 829323459 no 97.6198971574178 TraesCS3B01G286200 chr3B_457970708 chr3B 457970708 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 457967077 457970954 3878 2 0.0515729757607014 RFvsST 218049 829541507 829323459 no 10.462823284694 TraesCS3B01G286200 chr3B_457967726 chr3B 457967726 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 457967077 457970954 3878 2 0.0515729757607014 RFvsST 218049 829541507 829323459 no 10.462823284694 TraesCS3B01G287800 chr3B_462099522 chr3B 462099522 C C A A 4 missense_variant MODERATE transcript non_Triplet 462096186 462100061 3876 1 0.0257997936016512 RFvsST 218049 829541507 829323459 no 455.585500441787 TraesCS3B01G288400 chr3B_463094884 chr3B 463094884 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 463095936 463096434 499 2 0.400801603206413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G288400 chr3B_463093512 chr3B 463093512 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 463095936 463096434 499 2 0.400801603206413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G288700 chr3B_463206643 chr3B 463206643 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 463203072 463205129 2058 1 0.0485908649173955 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G288900 chr3B_463256727 chr3B 463256727 G G A A 4 missense_variant MODERATE transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463256644 chr3B 463256644 C C T T 4 missense_variant MODERATE transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463256266 chr3B 463256266 G G T T 4 missense_variant MODERATE transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463256124 chr3B 463256124 C C T T 4 missense_variant MODERATE transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463255442 chr3B 463255442 G G A A 4 synonymous_variant LOW transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463255483 chr3B 463255483 T T C C 4 missense_variant MODERATE transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G288900 chr3B_463256858 chr3B 463256858 G G A A 4 splice_region_variant&stop_retained_variant LOW transcript non_Triplet 463251377 463257062 5686 7 0.123109391487865 RFvsST 218049 829541507 829323459 no 351.168261655159 TraesCS3B01G289200 chr3B_464093852 chr3B 464093852 A G A G 3 missense_variant MODERATE transcript non_Triplet 464092329 464095724 3396 1 0.0294464075382803 RFvsST 218049 829541507 829323459 no 215.550321941938 TraesCS3B01G289700 chr3B_465066586 chr3B 465066586 A A G G 4 synonymous_variant LOW transcript unique_Triplet 465065210 465067413 2204 1 0.0453720508166969 RFvsST 218049 829541507 829323459 no 133.061730634141 TraesCS3B01G289900 chr3B_465340000 chr3B 465340000 C C G G 4 missense_variant MODERATE transcript unique_Triplet 465339124 465344498 5375 3 0.0558139534883721 RFvsST 218049 829541507 829323459 no 233.890843493475 TraesCS3B01G289900 chr3B_465342141 chr3B 465342141 A A T T 4 missense_variant MODERATE transcript unique_Triplet 465339124 465344498 5375 3 0.0558139534883721 RFvsST 218049 829541507 829323459 no 233.890843493475 TraesCS3B01G289900 chr3B_465342664 chr3B 465342664 T T C C 4 synonymous_variant LOW transcript unique_Triplet 465339124 465344498 5375 3 0.0558139534883721 RFvsST 218049 829541507 829323459 no 233.890843493475 TraesCS3B01G290000 chr3B_465502814 chr3B 465502814 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 465502426 465503286 861 3 0.348432055749129 RFvsST 218049 829541507 829323459 no 317.655443515408 TraesCS3B01G290000 chr3B_465502688 chr3B 465502688 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 465502426 465503286 861 3 0.348432055749129 RFvsST 218049 829541507 829323459 no 317.655443515408 TraesCS3B01G290000 chr3B_465502628 chr3B 465502628 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 465502426 465503286 861 3 0.348432055749129 RFvsST 218049 829541507 829323459 no 317.655443515408 TraesCS3B01G292200 chr3B_470613163 chr3B 470613163 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 470597832 470613011 15180 3 0.0197628458498024 RFvsST 218049 829541507 829323459 no 76.605819851722 TraesCS3B01G292200 chr3B_470613176 chr3B 470613176 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 470597832 470613011 15180 3 0.0197628458498024 RFvsST 218049 829541507 829323459 no 76.605819851722 TraesCS3B01G292200 chr3B_470597722 chr3B 470597722 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 470597832 470613011 15180 3 0.0197628458498024 RFvsST 218049 829541507 829323459 no 76.605819851722 TraesCS3B01G292300 chr3B_470848667 chr3B 470848667 G T G T 3 synonymous_variant LOW transcript unique_Triplet 470847845 470852954 5110 1 0.0195694716242661 RFvsST 218049 829541507 829323459 no 46.2977918860296 TraesCS3B01G292400 chr3B_470853699 chr3B 470853699 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 470856184 470858166 1983 1 0.0504286434694907 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G292900 chr3B_471475264 chr3B 471475264 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 471474905 471479857 4953 1 0.0201897839693115 RFvsST 218049 829541507 829323459 no 1479.67304442164 TraesCS3B01G293900 chr3B_472912694 chr3B 472912694 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 472911041 472913011 1971 2 0.101471334348047 RFvsST 218049 829541507 829323459 no 732.295849251415 TraesCS3B01G293900 chr3B_472911823 chr3B 472911823 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 472911041 472913011 1971 2 0.101471334348047 RFvsST 218049 829541507 829323459 no 732.295849251415 TraesCS3B01G295500 chr3B_474027034 chr3B 474027034 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 474016981 474028365 11385 3 0.0263504611330698 RFvsST 218049 829541507 829323459 no 129.571759143999 TraesCS3B01G295500 chr3B_474028941 chr3B 474028941 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 474016981 474028365 11385 3 0.0263504611330698 RFvsST 218049 829541507 829323459 no 129.571759143999 TraesCS3B01G295500 chr3B_474027046 chr3B 474027046 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 474016981 474028365 11385 3 0.0263504611330698 RFvsST 218049 829541507 829323459 no 129.571759143999 TraesCS3B01G295700 chr3B_474029256 chr3B 474029256 C T C T 3 synonymous_variant LOW transcript unique_Triplet 474028962 474031767 2806 5 0.178189593727726 RFvsST 218049 829541507 829323459 no 88.1884099487088 TraesCS3B01G295700 chr3B_474029474 chr3B 474029474 A G A G 3 synonymous_variant LOW transcript unique_Triplet 474028962 474031767 2806 5 0.178189593727726 RFvsST 218049 829541507 829323459 no 88.1884099487088 TraesCS3B01G295700 chr3B_474029346 chr3B 474029346 C A C A 3 synonymous_variant LOW transcript unique_Triplet 474028962 474031767 2806 5 0.178189593727726 RFvsST 218049 829541507 829323459 no 88.1884099487088 TraesCS3B01G295700 chr3B_474029250 chr3B 474029250 G A G A 3 synonymous_variant LOW transcript unique_Triplet 474028962 474031767 2806 5 0.178189593727726 RFvsST 218049 829541507 829323459 no 88.1884099487088 TraesCS3B01G295700 chr3B_474029894 chr3B 474029894 G G C C 4 missense_variant MODERATE transcript unique_Triplet 474028962 474031767 2806 5 0.178189593727726 RFvsST 218049 829541507 829323459 no 88.1884099487088 TraesCS3B01G299900 chr3B_481616956 chr3B 481616956 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 481616360 481616776 417 2 0.479616306954436 RFvsST 218049 829541507 829323459 no 43.6969977888149 TraesCS3B01G299900 chr3B_481616824 chr3B 481616824 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 481616360 481616776 417 2 0.479616306954436 RFvsST 218049 829541507 829323459 no 43.6969977888149 TraesCS3B01G300000 chr3B_481621029 chr3B 481621029 C C A A 4 missense_variant MODERATE transcript unique_Triplet 481618798 481622546 3749 1 0.0266737796745799 RFvsST 218049 829541507 829323459 no 416.053834631372 TraesCS3B01G300600 chr3B_482253144 chr3B 482253144 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 482252976 482257617 4642 2 0.0430848772081 RFvsST 218049 829541507 829323459 no 201.536432927702 TraesCS3B01G300600 chr3B_482255801 chr3B 482255801 C T C T 3 synonymous_variant LOW transcript unique_Triplet 482252976 482257617 4642 2 0.0430848772081 RFvsST 218049 829541507 829323459 no 201.536432927702 TraesCS3B01G301100 chr3B_482998809 chr3B 482998809 C C T T 4 missense_variant MODERATE transcript unique_Triplet 482994442 482999778 5337 4 0.0749484729248642 RFvsST 218049 829541507 829323459 no 188.85657869919 TraesCS3B01G301100 chr3B_482996978 chr3B 482996978 T C T C 3 synonymous_variant LOW transcript unique_Triplet 482994442 482999778 5337 4 0.0749484729248642 RFvsST 218049 829541507 829323459 no 188.85657869919 TraesCS3B01G301100 chr3B_482998796 chr3B 482998796 T T C C 4 missense_variant MODERATE transcript unique_Triplet 482994442 482999778 5337 4 0.0749484729248642 RFvsST 218049 829541507 829323459 no 188.85657869919 TraesCS3B01G301100 chr3B_482994734 chr3B 482994734 G A G A 3 missense_variant MODERATE transcript unique_Triplet 482994442 482999778 5337 4 0.0749484729248642 RFvsST 218049 829541507 829323459 no 188.85657869919 TraesCS3B01G301700 chr3B_484872961 chr3B 484872961 T T A A 4 stop_gained HIGH transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G301700 chr3B_484872710 chr3B 484872710 C T C T 3 synonymous_variant LOW transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G301700 chr3B_484872291 chr3B 484872291 A G A G 3 missense_variant MODERATE transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G301700 chr3B_484872339 chr3B 484872339 T T C C 4 missense_variant MODERATE transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G301700 chr3B_484872959 chr3B 484872959 T A T A 3 missense_variant MODERATE transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G301700 chr3B_484872448 chr3B 484872448 G C G C 3 missense_variant MODERATE transcript non_Triplet 484872158 484873180 1023 6 0.586510263929619 RFvsST 218049 829541507 829323459 no 87.1504749543291 TraesCS3B01G302100 chr3B_485690595 chr3B 485690595 T C T C 3 synonymous_variant LOW transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302100 chr3B_485693879 chr3B 485693879 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302100 chr3B_485689855 chr3B 485689855 A G C G,C 6 synonymous_variant LOW transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302100 chr3B_485693123 chr3B 485693123 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302100 chr3B_485690323 chr3B 485690323 A G A G 3 missense_variant MODERATE transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302100 chr3B_485693309 chr3B 485693309 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 485689559 485693042 3484 6 0.172215843857635 RFvsST 218049 829541507 829323459 no 2545.46526843002 TraesCS3B01G302300 chr3B_486379193 chr3B 486379193 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 486377909 486379031 1123 1 0.0890471950133571 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G302500 chr3B_486612035 chr3B 486612035 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 486611199 486617961 6763 4 0.0591453496968801 RFvsST 218049 829541507 829323459 no 136.239129540283 TraesCS3B01G302500 chr3B_486611921 chr3B 486611921 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 486611199 486617961 6763 4 0.0591453496968801 RFvsST 218049 829541507 829323459 no 136.239129540283 TraesCS3B01G302500 chr3B_486611612 chr3B 486611612 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 486611199 486617961 6763 4 0.0591453496968801 RFvsST 218049 829541507 829323459 no 136.239129540283 TraesCS3B01G302500 chr3B_486611596 chr3B 486611596 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 486611199 486617961 6763 4 0.0591453496968801 RFvsST 218049 829541507 829323459 no 136.239129540283 TraesCS3B01G303000 chr3B_487048835 chr3B 487048835 T T C C 4 synonymous_variant LOW transcript unique_Triplet 487048826 487050207 1382 1 0.0723589001447178 RFvsST 218049 829541507 829323459 no 668.980428961876 TraesCS3B01G303200 chr3B_487442848 chr3B 487442848 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 487440929 487443379 2451 1 0.0407996736026112 RFvsST 218049 829541507 829323459 no 163.345444971913 TraesCS3B01G303700 chr3B_487883246 chr3B 487883246 C C T T 4 missense_variant MODERATE transcript unique_Triplet 487882818 487883513 696 1 0.14367816091954 RFvsST 218049 829541507 829323459 no 221.26856206357 TraesCS3B01G303900 chr3B_487911072 chr3B 487911072 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 487908555 487911327 2773 1 0.0360620266858998 RFvsST 218049 829541507 829323459 no 175.654614149224 TraesCS3B01G304000 chr3B_488187764 chr3B 488187764 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 488187651 488190819 3169 1 0.0315556958030925 RFvsST 218049 829541507 829323459 no 150.079120886543 TraesCS3B01G306000 chr3B_491520037 chr3B 491520037 A A G G 4 synonymous_variant LOW transcript unique_Triplet 491519419 491521219 1801 1 0.0555247084952804 RFvsST 218049 829541507 829323459 no 77.1168242782277 TraesCS3B01G307300 chr3B_493584859 chr3B 493584859 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 493584552 493585450 899 1 0.111234705228031 RFvsST 218049 829541507 829323459 no 214.550515695876 TraesCS3B01G307400 chr3B_493651755 chr3B 493651755 C C T T 4 missense_variant MODERATE transcript unique_Triplet 493648449 493653177 4729 2 0.0422922393740749 RFvsST 218049 829541507 829323459 no 24.6858814278463 TraesCS3B01G307400 chr3B_493651832 chr3B 493651832 T T C C 4 synonymous_variant LOW transcript unique_Triplet 493648449 493653177 4729 2 0.0422922393740749 RFvsST 218049 829541507 829323459 no 24.6858814278463 TraesCS3B01G307700 chr3B_494070702 chr3B 494070702 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 494070348 494073448 3101 1 0.0322476620445018 RFvsST 218049 829541507 829323459 no 83.4500491174021 TraesCS3B01G308200 chr3B_495478247 chr3B 495478247 T T A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495475751 chr3B 495475751 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495478162 chr3B 495478162 G T G T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495472506 chr3B 495472506 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495473528 chr3B 495473528 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495473326 chr3B 495473326 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495471404 chr3B 495471404 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308200 chr3B_495471115 chr3B 495471115 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 495471688 495477198 5511 8 0.145164217020504 RFvsST 218049 829541507 829323459 no 20.9359440978157 TraesCS3B01G308300 chr3B_495485337 chr3B 495485337 G G A A 4 synonymous_variant LOW transcript non_Triplet 495478268 495486472 8205 3 0.036563071297989 RFvsST 218049 829541507 829323459 no 156.825990181237 TraesCS3B01G308300 chr3B_495483855 chr3B 495483855 T T C C 4 synonymous_variant LOW transcript non_Triplet 495478268 495486472 8205 3 0.036563071297989 RFvsST 218049 829541507 829323459 no 156.825990181237 TraesCS3B01G308300 chr3B_495483883 chr3B 495483883 C T C T 3 missense_variant MODERATE transcript non_Triplet 495478268 495486472 8205 3 0.036563071297989 RFvsST 218049 829541507 829323459 no 156.825990181237 TraesCS3B01G308700 chr3B_496901446 chr3B 496901446 C C T T 4 missense_variant MODERATE transcript unique_Triplet 496895986 496902027 6042 1 0.0165508109897385 RFvsST 218049 829541507 829323459 no 40.6588990070831 TraesCS3B01G308800 chr3B_497089888 chr3B 497089888 G G T T 4 synonymous_variant LOW transcript nonUnique_Triplet 497088409 497093274 4866 4 0.082203041512536 RFvsST 218049 829541507 829323459 no 65.6057848707745 TraesCS3B01G308800 chr3B_497089082 chr3B 497089082 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 497088409 497093274 4866 4 0.082203041512536 RFvsST 218049 829541507 829323459 no 65.6057848707745 TraesCS3B01G308800 chr3B_497090147 chr3B 497090147 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 497088409 497093274 4866 4 0.082203041512536 RFvsST 218049 829541507 829323459 no 65.6057848707745 TraesCS3B01G308800 chr3B_497093094 chr3B 497093094 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 497088409 497093274 4866 4 0.082203041512536 RFvsST 218049 829541507 829323459 no 65.6057848707745 TraesCS3B01G309100 chr3B_497459228 chr3B 497459228 C T C T 3 intron_variant MODIFIER transcript nonUnique_Triplet 497458955 497460523 1569 1 0.0637348629700446 RFvsST 218049 829541507 829323459 no 107.635963513815 TraesCS3B01G309400 chr3B_498053917 chr3B 498053917 T T C C 4 missense_variant MODERATE transcript unique_Triplet 498052672 498058021 5350 2 0.0373831775700935 RFvsST 218049 829541507 829323459 no 48.0271109200169 TraesCS3B01G309400 chr3B_498057856 chr3B 498057856 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 498052672 498058021 5350 2 0.0373831775700935 RFvsST 218049 829541507 829323459 no 48.0271109200169 TraesCS3B01G309700 chr3B_498365881 chr3B 498365881 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 498350951 498366154 15204 3 0.0197316495659037 RFvsST 218049 829541507 829323459 no 39.0176386769438 TraesCS3B01G309700 chr3B_498360599 chr3B 498360599 C G C G 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 498350951 498366154 15204 3 0.0197316495659037 RFvsST 218049 829541507 829323459 no 39.0176386769438 TraesCS3B01G309700 chr3B_498365822 chr3B 498365822 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 498350951 498366154 15204 3 0.0197316495659037 RFvsST 218049 829541507 829323459 no 39.0176386769438 TraesCS3B01G310300 chr3B_499086072 chr3B 499086072 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 499084876 499085904 1029 2 0.194363459669582 RFvsST 218049 829541507 829323459 no 500.87238839181 TraesCS3B01G310300 chr3B_499086126 chr3B 499086126 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 499084876 499085904 1029 2 0.194363459669582 RFvsST 218049 829541507 829323459 no 500.87238839181 TraesCS3B01G310500 chr3B_499175733 chr3B 499175733 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 499173677 499175864 2188 5 0.228519195612431 RFvsST 218049 829541507 829323459 no 159.081917340336 TraesCS3B01G310500 chr3B_499175376 chr3B 499175376 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 499173677 499175864 2188 5 0.228519195612431 RFvsST 218049 829541507 829323459 no 159.081917340336 TraesCS3B01G310500 chr3B_499175886 chr3B 499175886 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499173677 499175864 2188 5 0.228519195612431 RFvsST 218049 829541507 829323459 no 159.081917340336 TraesCS3B01G310500 chr3B_499173577 chr3B 499173577 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 499173677 499175864 2188 5 0.228519195612431 RFvsST 218049 829541507 829323459 no 159.081917340336 TraesCS3B01G310500 chr3B_499175869 chr3B 499175869 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 499173677 499175864 2188 5 0.228519195612431 RFvsST 218049 829541507 829323459 no 159.081917340336 TraesCS3B01G310900 chr3B_499454178 chr3B 499454178 T T C C 4 synonymous_variant LOW transcript non_Triplet 499450466 499454313 3848 3 0.077962577962578 RFvsST 218049 829541507 829323459 no 269.627966193849 TraesCS3B01G310900 chr3B_499454449 chr3B 499454449 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 499450466 499454313 3848 3 0.077962577962578 RFvsST 218049 829541507 829323459 no 269.627966193849 TraesCS3B01G310900 chr3B_499450751 chr3B 499450751 C C T T 4 missense_variant MODERATE transcript non_Triplet 499450466 499454313 3848 3 0.077962577962578 RFvsST 218049 829541507 829323459 no 269.627966193849 TraesCS3B01G311500 chr3B_500540295 chr3B 500540295 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 500539704 500540461 758 3 0.395778364116095 RFvsST 218049 829541507 829323459 no 161.676516380135 TraesCS3B01G311500 chr3B_500540461 chr3B 500540461 A A T T 4 splice_region_variant LOW transcript nonUnique_Triplet 500539704 500540461 758 3 0.395778364116095 RFvsST 218049 829541507 829323459 no 161.676516380135 TraesCS3B01G311500 chr3B_500540577 chr3B 500540577 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 500539704 500540461 758 3 0.395778364116095 RFvsST 218049 829541507 829323459 no 161.676516380135 TraesCS3B01G311600 chr3B_500545918 chr3B 500545918 C T C T 3 missense_variant MODERATE transcript unique_Triplet 500541098 500547168 6071 1 0.0164717509471257 RFvsST 218049 829541507 829323459 no 64.9483965137866 TraesCS3B01G311700 chr3B_501108076 chr3B 501108076 C C T T 4 missense_variant MODERATE transcript unique_Triplet 501107387 501111302 3916 5 0.127681307456588 RFvsST 218049 829541507 829323459 no 234.777168303526 TraesCS3B01G311700 chr3B_501108317 chr3B 501108317 T C T C 3 synonymous_variant LOW transcript unique_Triplet 501107387 501111302 3916 5 0.127681307456588 RFvsST 218049 829541507 829323459 no 234.777168303526 TraesCS3B01G311700 chr3B_501108535 chr3B 501108535 G A G A 3 synonymous_variant LOW transcript unique_Triplet 501107387 501111302 3916 5 0.127681307456588 RFvsST 218049 829541507 829323459 no 234.777168303526 TraesCS3B01G311700 chr3B_501107598 chr3B 501107598 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 501107387 501111302 3916 5 0.127681307456588 RFvsST 218049 829541507 829323459 no 234.777168303526 TraesCS3B01G311700 chr3B_501107835 chr3B 501107835 T C T C 3 missense_variant MODERATE transcript unique_Triplet 501107387 501111302 3916 5 0.127681307456588 RFvsST 218049 829541507 829323459 no 234.777168303526 TraesCS3B01G311900 chr3B_501128703 chr3B 501128703 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 501122938 501129575 6638 1 0.0150647785477553 RFvsST 218049 829541507 829323459 no 26.4504655405761 TraesCS3B01G313000 chr3B_502921831 chr3B 502921831 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 502921843 502923631 1789 1 0.0558971492453885 RFvsST 218049 829541507 829323459 no 717.454696645901 TraesCS3B01G313400 chr3B_503968816 chr3B 503968816 C T C T 3 missense_variant MODERATE transcript non_Triplet 503968692 503970098 1407 1 0.0710732054015636 RFvsST 218049 829541507 829323459 no 854.279978618956 TraesCS3B01G314000 chr3B_504982433 chr3B 504982433 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 504980328 504986707 6380 1 0.0156739811912226 RFvsST 218049 829541507 829323459 no 45.7489536136393 TraesCS3B01G314100 chr3B_505016068 chr3B 505016068 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 505016142 505016690 549 1 0.182149362477231 RFvsST 218049 829541507 829323459 no 14.535873474214 TraesCS3B01G314200 chr3B_505265061 chr3B 505265061 C C G G 4 missense_variant MODERATE transcript unique_Triplet 505263821 505268484 4664 1 0.0214408233276158 RFvsST 218049 829541507 829323459 no 86.3676454151915 TraesCS3B01G314300 chr3B_505289313 chr3B 505289313 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 505287133 505289270 2138 4 0.187090739008419 RFvsST 218049 829541507 829323459 no 214.607372440036 TraesCS3B01G314300 chr3B_505287649 chr3B 505287649 A A G G 4 synonymous_variant LOW transcript unique_Triplet 505287133 505289270 2138 4 0.187090739008419 RFvsST 218049 829541507 829323459 no 214.607372440036 TraesCS3B01G314300 chr3B_505289306 chr3B 505289306 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 505287133 505289270 2138 4 0.187090739008419 RFvsST 218049 829541507 829323459 no 214.607372440036 TraesCS3B01G314300 chr3B_505287567 chr3B 505287567 C C T T 4 missense_variant MODERATE transcript unique_Triplet 505287133 505289270 2138 4 0.187090739008419 RFvsST 218049 829541507 829323459 no 214.607372440036 TraesCS3B01G314600 chr3B_505835829 chr3B 505835829 G G C C 4 missense_variant MODERATE transcript unique_Triplet 505835517 505836322 806 1 0.124069478908189 RFvsST 218049 829541507 829323459 no 180.797874862635 TraesCS3B01G314800 chr3B_506624017 chr3B 506624017 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 506619675 506620873 1199 1 0.0834028356964137 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G315500 chr3B_507277307 chr3B 507277307 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 507275489 507277362 1874 1 0.0533617929562433 RFvsST 218049 829541507 829323459 no 478.231325001743 TraesCS3B01G316700 chr3B_508478375 chr3B 508478375 C T C T 3 missense_variant MODERATE transcript unique_Triplet 508478304 508481815 3512 1 0.0284738041002278 RFvsST 218049 829541507 829323459 no 22.5760716907849 TraesCS3B01G317400 chr3B_511072193 chr3B 511072193 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 511066408 511067734 1327 3 0.226073850791258 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G317400 chr3B_511072280 chr3B 511072280 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 511066408 511067734 1327 3 0.226073850791258 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G317400 chr3B_511072167 chr3B 511072167 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 511066408 511067734 1327 3 0.226073850791258 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G317600 chr3B_511075990 chr3B 511075990 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G317600 chr3B_511076038 chr3B 511076038 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G317600 chr3B_511072436 chr3B 511072436 C C T T 4 synonymous_variant LOW transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G317600 chr3B_511076022 chr3B 511076022 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G317600 chr3B_511072496 chr3B 511072496 A A G G 4 synonymous_variant LOW transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G317600 chr3B_511072830 chr3B 511072830 T T C C 4 synonymous_variant LOW transcript unique_Triplet 511072346 511075855 3510 6 0.170940170940171 RFvsST 218049 829541507 829323459 no 12.5253346679951 TraesCS3B01G318600 chr3B_513572057 chr3B 513572057 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513566862 513572044 5183 3 0.057881535790083 RFvsST 218049 829541507 829323459 no 617.016109317665 TraesCS3B01G318600 chr3B_513572109 chr3B 513572109 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513566862 513572044 5183 3 0.057881535790083 RFvsST 218049 829541507 829323459 no 617.016109317665 TraesCS3B01G318600 chr3B_513566651 chr3B 513566651 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 513566862 513572044 5183 3 0.057881535790083 RFvsST 218049 829541507 829323459 no 617.016109317665 TraesCS3B01G318700 chr3B_513665765 chr3B 513665765 G G A A 4 missense_variant MODERATE transcript unique_Triplet 513664314 513667985 3672 3 0.0816993464052288 RFvsST 218049 829541507 829323459 no 198.348161198437 TraesCS3B01G318700 chr3B_513665947 chr3B 513665947 A A T T 4 synonymous_variant LOW transcript unique_Triplet 513664314 513667985 3672 3 0.0816993464052288 RFvsST 218049 829541507 829323459 no 198.348161198437 TraesCS3B01G318700 chr3B_513667965 chr3B 513667965 A G A G 3 synonymous_variant LOW transcript unique_Triplet 513664314 513667985 3672 3 0.0816993464052288 RFvsST 218049 829541507 829323459 no 198.348161198437 TraesCS3B01G320400 chr3B_519401574 chr3B 519401574 G G A A 4 synonymous_variant LOW transcript unique_Triplet 519400293 519401994 1702 1 0.0587544065804935 RFvsST 218049 829541507 829323459 no 153.680243638413 TraesCS3B01G320900 chr3B_519863345 chr3B 519863345 G G A A 4 synonymous_variant LOW transcript unique_Triplet 519859562 519863585 4024 1 0.0248508946322068 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G321000 chr3B_520330387 chr3B 520330387 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 520330196 520333488 3293 3 0.0911023382933495 RFvsST 218049 829541507 829323459 no 529.020418821118 TraesCS3B01G321000 chr3B_520333293 chr3B 520333293 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 520330196 520333488 3293 3 0.0911023382933495 RFvsST 218049 829541507 829323459 no 529.020418821118 TraesCS3B01G321000 chr3B_520330467 chr3B 520330467 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 520330196 520333488 3293 3 0.0911023382933495 RFvsST 218049 829541507 829323459 no 529.020418821118 TraesCS3B01G321100 chr3B_520371156 chr3B 520371156 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 520370478 520372103 1626 2 0.1230012300123 RFvsST 218049 829541507 829323459 no 93.8067982358465 TraesCS3B01G321100 chr3B_520372851 chr3B 520372851 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 520370478 520372103 1626 2 0.1230012300123 RFvsST 218049 829541507 829323459 no 93.8067982358465 TraesCS3B01G321600 chr3B_520611691 chr3B 520611691 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 520610744 520611655 912 2 0.219298245614035 RFvsST 218049 829541507 829323459 no 570.941348544073 TraesCS3B01G321600 chr3B_520610679 chr3B 520610679 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 520610744 520611655 912 2 0.219298245614035 RFvsST 218049 829541507 829323459 no 570.941348544073 TraesCS3B01G322600 chr3B_521798352 chr3B 521798352 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521794378 chr3B 521794378 G G A A 4 synonymous_variant LOW transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521792707 chr3B 521792707 G G A A 4 synonymous_variant LOW transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521795330 chr3B 521795330 T T C C 4 missense_variant MODERATE transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521793937 chr3B 521793937 A G A G 3 missense_variant MODERATE transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521798302 chr3B 521798302 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521795296 chr3B 521795296 A T A T 3 synonymous_variant LOW transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521793320 chr3B 521793320 T T G G 4 missense_variant MODERATE transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521791678 chr3B 521791678 G G A A 4 synonymous_variant LOW transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521794945 chr3B 521794945 C C T T 4 synonymous_variant LOW transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G322600 chr3B_521795087 chr3B 521795087 G G A A 4 missense_variant MODERATE transcript unique_Triplet 521790766 521798630 7865 11 0.13986013986014 RFvsST 218049 829541507 829323459 no 541.981293219209 TraesCS3B01G323000 chr3B_522776447 chr3B 522776447 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 522780387 522781429 1043 1 0.0958772770853308 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G323900 chr3B_524452353 chr3B 524452353 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 524449865 524453988 4124 4 0.0969932104752667 RFvsST 218049 829541507 829323459 no 1038.31326650542 TraesCS3B01G323900 chr3B_524451197 chr3B 524451197 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 524449865 524453988 4124 4 0.0969932104752667 RFvsST 218049 829541507 829323459 no 1038.31326650542 TraesCS3B01G323900 chr3B_524449438 chr3B 524449438 T T A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 524449865 524453988 4124 4 0.0969932104752667 RFvsST 218049 829541507 829323459 no 1038.31326650542 TraesCS3B01G323900 chr3B_524449750 chr3B 524449750 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 524449865 524453988 4124 4 0.0969932104752667 RFvsST 218049 829541507 829323459 no 1038.31326650542 TraesCS3B01G324200 chr3B_525157131 chr3B 525157131 A A T T 4 synonymous_variant LOW transcript unique_Triplet 525153127 525161239 8113 3 0.0369776901269567 RFvsST 218049 829541507 829323459 no 31.256860765086 TraesCS3B01G324200 chr3B_525153138 chr3B 525153138 T T C C 4 synonymous_variant LOW transcript unique_Triplet 525153127 525161239 8113 3 0.0369776901269567 RFvsST 218049 829541507 829323459 no 31.256860765086 TraesCS3B01G324200 chr3B_525153732 chr3B 525153732 A A G G 4 missense_variant MODERATE transcript unique_Triplet 525153127 525161239 8113 3 0.0369776901269567 RFvsST 218049 829541507 829323459 no 31.256860765086 TraesCS3B01G325900 chr3B_526810227 chr3B 526810227 T T C C 4 missense_variant MODERATE transcript unique_Triplet 526808243 526810592 2350 1 0.0425531914893617 RFvsST 218049 829541507 829323459 no 6.02015840829585 TraesCS3B01G329100 chr3B_531800350 chr3B 531800350 C T C T 3 missense_variant MODERATE transcript unique_Triplet 531797235 531801917 4683 1 0.0213538330130258 RFvsST 218049 829541507 829323459 no 9.15384348757592 TraesCS3B01G329400 chr3B_532343431 chr3B 532343431 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 532342878 532346258 3381 4 0.118308192842354 RFvsST 218049 829541507 829323459 no 21.0240099696056 TraesCS3B01G329400 chr3B_532342896 chr3B 532342896 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 532342878 532346258 3381 4 0.118308192842354 RFvsST 218049 829541507 829323459 no 21.0240099696056 TraesCS3B01G329400 chr3B_532342976 chr3B 532342976 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 532342878 532346258 3381 4 0.118308192842354 RFvsST 218049 829541507 829323459 no 21.0240099696056 TraesCS3B01G329400 chr3B_532344762 chr3B 532344762 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 532342878 532346258 3381 4 0.118308192842354 RFvsST 218049 829541507 829323459 no 21.0240099696056 TraesCS3B01G336100 chr3B_542510728 chr3B 542510728 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 542510694 542512878 2185 1 0.045766590389016 RFvsST 218049 829541507 829323459 no 35.4620823892919 TraesCS3B01G336700 chr3B_542731912 chr3B 542731912 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542735314 chr3B 542735314 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542735570 chr3B 542735570 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542731564 chr3B 542731564 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542735653 chr3B 542735653 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542735549 chr3B 542735549 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G336700 chr3B_542735623 chr3B 542735623 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 542731503 542735443 3941 7 0.177619893428064 RFvsST 218049 829541507 829323459 no 169.332467450153 TraesCS3B01G337100 chr3B_543470950 chr3B 543470950 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 543467214 543470835 3622 4 0.110436223081171 RFvsST 218049 829541507 829323459 no 102.77173490589 TraesCS3B01G337100 chr3B_543467399 chr3B 543467399 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 543467214 543470835 3622 4 0.110436223081171 RFvsST 218049 829541507 829323459 no 102.77173490589 TraesCS3B01G337100 chr3B_543469214 chr3B 543469214 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 543467214 543470835 3622 4 0.110436223081171 RFvsST 218049 829541507 829323459 no 102.77173490589 TraesCS3B01G337100 chr3B_543469230 chr3B 543469230 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 543467214 543470835 3622 4 0.110436223081171 RFvsST 218049 829541507 829323459 no 102.77173490589 TraesCS3B01G337300 chr3B_543690889 chr3B 543690889 A G A G 3 synonymous_variant LOW transcript unique_Triplet 543687915 543693134 5220 3 0.0574712643678161 RFvsST 218049 829541507 829323459 no 787.850596749556 TraesCS3B01G337300 chr3B_543688810 chr3B 543688810 C T C T 3 synonymous_variant LOW transcript unique_Triplet 543687915 543693134 5220 3 0.0574712643678161 RFvsST 218049 829541507 829323459 no 787.850596749556 TraesCS3B01G337300 chr3B_543688776 chr3B 543688776 G A G A 3 missense_variant MODERATE transcript unique_Triplet 543687915 543693134 5220 3 0.0574712643678161 RFvsST 218049 829541507 829323459 no 787.850596749556 TraesCS3B01G337400 chr3B_543722837 chr3B 543722837 C C T T 4 synonymous_variant LOW transcript non_Triplet 543718807 543723619 4813 5 0.103885310617079 RFvsST 218049 829541507 829323459 no 24.3025450026516 TraesCS3B01G337400 chr3B_543722001 chr3B 543722001 T C T C 3 missense_variant MODERATE transcript non_Triplet 543718807 543723619 4813 5 0.103885310617079 RFvsST 218049 829541507 829323459 no 24.3025450026516 TraesCS3B01G337400 chr3B_543718674 chr3B 543718674 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 543718807 543723619 4813 5 0.103885310617079 RFvsST 218049 829541507 829323459 no 24.3025450026516 TraesCS3B01G337400 chr3B_543722060 chr3B 543722060 C C G G 4 missense_variant MODERATE transcript non_Triplet 543718807 543723619 4813 5 0.103885310617079 RFvsST 218049 829541507 829323459 no 24.3025450026516 TraesCS3B01G337400 chr3B_543718849 chr3B 543718849 C C T T 4 synonymous_variant LOW transcript non_Triplet 543718807 543723619 4813 5 0.103885310617079 RFvsST 218049 829541507 829323459 no 24.3025450026516 TraesCS3B01G337500 chr3B_543840092 chr3B 543840092 C T C T 3 missense_variant MODERATE transcript unique_Triplet 543840058 543842783 2726 1 0.0366837857666911 RFvsST 218049 829541507 829323459 no 477.037948725208 TraesCS3B01G337600 chr3B_543884438 chr3B 543884438 T C T C 3 synonymous_variant LOW transcript unique_Triplet 543874109 543884645 10537 3 0.0284711018316409 RFvsST 218049 829541507 829323459 no 137.78523058715 TraesCS3B01G337600 chr3B_543883783 chr3B 543883783 T T C C 4 synonymous_variant LOW transcript unique_Triplet 543874109 543884645 10537 3 0.0284711018316409 RFvsST 218049 829541507 829323459 no 137.78523058715 TraesCS3B01G337600 chr3B_543874210 chr3B 543874210 G G C C 4 synonymous_variant LOW transcript unique_Triplet 543874109 543884645 10537 3 0.0284711018316409 RFvsST 218049 829541507 829323459 no 137.78523058715 TraesCS3B01G337700 chr3B_544109862 chr3B 544109862 G G A A 4 synonymous_variant LOW transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544112108 chr3B 544112108 T T C C 4 synonymous_variant LOW transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544110265 chr3B 544110265 G G A A 4 missense_variant MODERATE transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544110448 chr3B 544110448 C C T T 4 missense_variant MODERATE transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544109536 chr3B 544109536 G G A A 4 missense_variant MODERATE transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544109104 chr3B 544109104 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544112418 chr3B 544112418 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544110492 chr3B 544110492 T T G G 4 missense_variant MODERATE transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544114163 chr3B 544114163 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544112113 chr3B 544112113 C C G G 4 missense_variant MODERATE transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G337700 chr3B_544114363 chr3B 544114363 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 544109302 544112123 2822 11 0.38979447200567 RFvsST 218049 829541507 829323459 no 558.014765152316 TraesCS3B01G338000 chr3B_544558429 chr3B 544558429 C T C T 3 synonymous_variant LOW transcript unique_Triplet 544557225 544559204 1980 1 0.0505050505050505 RFvsST 218049 829541507 829323459 no 41.01712775047 TraesCS3B01G338200 chr3B_544817985 chr3B 544817985 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 544818452 544819617 1166 4 0.343053173241852 RFvsST 218049 829541507 829323459 no 19.4980473058003 TraesCS3B01G338200 chr3B_544818294 chr3B 544818294 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 544818452 544819617 1166 4 0.343053173241852 RFvsST 218049 829541507 829323459 no 19.4980473058003 TraesCS3B01G338200 chr3B_544818081 chr3B 544818081 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 544818452 544819617 1166 4 0.343053173241852 RFvsST 218049 829541507 829323459 no 19.4980473058003 TraesCS3B01G338200 chr3B_544818484 chr3B 544818484 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 544818452 544819617 1166 4 0.343053173241852 RFvsST 218049 829541507 829323459 no 19.4980473058003 TraesCS3B01G339000 chr3B_545069210 chr3B 545069210 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545067353 chr3B 545067353 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545067196 chr3B 545067196 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545068647 chr3B 545068647 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545068510 chr3B 545068510 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545069304 chr3B 545069304 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545068471 chr3B 545068471 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545066831 chr3B 545066831 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545069321 chr3B 545069321 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545066792 chr3B 545066792 C T C T 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545067446 chr3B 545067446 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545068495 chr3B 545068495 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545067467 chr3B 545067467 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339000 chr3B_545067335 chr3B 545067335 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 545066345 545070039 3695 14 0.378890392422192 RFvsST 218049 829541507 829323459 no 29.0726444133367 TraesCS3B01G339200 chr3B_545201971 chr3B 545201971 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545198826 chr3B 545198826 A G A G 3 synonymous_variant LOW transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545203192 chr3B 545203192 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545195685 chr3B 545195685 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545202010 chr3B 545202010 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545200644 chr3B 545200644 G T G T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545202024 chr3B 545202024 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545202055 chr3B 545202055 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339200 chr3B_545198031 chr3B 545198031 C T C T 3 missense_variant MODERATE transcript unique_Triplet 545195697 545201577 5881 9 0.153035198095562 RFvsST 218049 829541507 829323459 no 71.7205881229774 TraesCS3B01G339300 chr3B_545205944 chr3B 545205944 G C G C 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205649 chr3B 545205649 G C G C 3 missense_variant MODERATE transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205919 chr3B 545205919 C A C A 3 missense_variant MODERATE transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545203328 chr3B 545203328 G A G A 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205837 chr3B 545205837 A T A T 3 missense_variant MODERATE transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205491 chr3B 545205491 G C G C 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205872 chr3B 545205872 C G C G 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545203304 chr3B 545203304 C T C T 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545203322 chr3B 545203322 C T C T 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G339300 chr3B_545205821 chr3B 545205821 G C G C 3 synonymous_variant LOW transcript unique_Triplet 545202068 545206381 4314 10 0.231803430690774 RFvsST 218049 829541507 829323459 no 383.817341812052 TraesCS3B01G340400 chr3B_547059330 chr3B 547059330 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 547058015 547059223 1209 2 0.165425971877585 RFvsST 218049 829541507 829323459 no 83.8164636761406 TraesCS3B01G340400 chr3B_547058364 chr3B 547058364 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 547058015 547059223 1209 2 0.165425971877585 RFvsST 218049 829541507 829323459 no 83.8164636761406 TraesCS3B01G343300 chr3B_552228239 chr3B 552228239 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 552219043 552229425 10383 1 0.00963112780506597 RFvsST 218049 829541507 829323459 no 281.216526308417 TraesCS3B01G346400 chr3B_556058544 chr3B 556058544 G G T T 4 missense_variant MODERATE transcript unique_Triplet 556048436 556059455 11020 1 0.00907441016333938 RFvsST 218049 829541507 829323459 no 239.686626304609 TraesCS3B01G347600 chr3B_556874996 chr3B 556874996 G A G A 3 missense_variant MODERATE transcript unique_Triplet 556868655 556878747 10093 1 0.00990785693054592 RFvsST 218049 829541507 829323459 no 57.7350022974378 TraesCS3B01G348700 chr3B_558500275 chr3B 558500275 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 558500278 558500922 645 1 0.155038759689922 RFvsST 218049 829541507 829323459 no 105.073651650496 TraesCS3B01G350600 chr3B_560873354 chr3B 560873354 C C G G 4 missense_variant MODERATE transcript non_Triplet 560872961 560873917 957 1 0.104493207941484 RFvsST 218049 829541507 829323459 no 39.8376537019285 TraesCS3B01G351200 chr3B_561232503 chr3B 561232503 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 561229185 561231909 2725 1 0.036697247706422 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G351400 chr3B_561537897 chr3B 561537897 C C G G 4 missense_variant MODERATE transcript unique_Triplet 561537825 561540482 2658 3 0.112866817155756 RFvsST 218049 829541507 829323459 no 40.6320384261371 TraesCS3B01G351400 chr3B_561540543 chr3B 561540543 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 561537825 561540482 2658 3 0.112866817155756 RFvsST 218049 829541507 829323459 no 40.6320384261371 TraesCS3B01G351400 chr3B_561537880 chr3B 561537880 A G A G 3 missense_variant MODERATE transcript unique_Triplet 561537825 561540482 2658 3 0.112866817155756 RFvsST 218049 829541507 829323459 no 40.6320384261371 TraesCS3B01G352800 chr3B_562444949 chr3B 562444949 A A G G 4 missense_variant MODERATE transcript unique_Triplet 562444480 562447047 2568 2 0.0778816199376947 RFvsST 218049 829541507 829323459 no 34.4583805128633 TraesCS3B01G352800 chr3B_562444907 chr3B 562444907 C C A A 4 synonymous_variant LOW transcript unique_Triplet 562444480 562447047 2568 2 0.0778816199376947 RFvsST 218049 829541507 829323459 no 34.4583805128633 TraesCS3B01G352900 chr3B_562450055 chr3B 562450055 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 562448392 562454707 6316 1 0.0158328055731476 RFvsST 218049 829541507 829323459 no 62.7651804607559 TraesCS3B01G353800 chr3B_564245687 chr3B 564245687 G G C C 4 missense_variant MODERATE transcript unique_Triplet 564240931 564246077 5147 1 0.0194287934719254 RFvsST 218049 829541507 829323459 no 116.910990694931 TraesCS3B01G353900 chr3B_564248732 chr3B 564248732 T C T C 3 synonymous_variant LOW transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564248451 chr3B 564248451 T C T C 3 synonymous_variant LOW transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564251133 chr3B 564251133 C C T T 4 missense_variant MODERATE transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564248744 chr3B 564248744 A A G G 4 synonymous_variant LOW transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564251473 chr3B 564251473 T T C C 4 synonymous_variant LOW transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564248861 chr3B 564248861 A G A G 3 synonymous_variant LOW transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G353900 chr3B_564253009 chr3B 564253009 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564247924 564252866 4943 7 0.141614404207971 RFvsST 218049 829541507 829323459 no 613.082171450069 TraesCS3B01G359500 chr3B_571758687 chr3B 571758687 G G A A 4 synonymous_variant LOW transcript unique_Triplet 571757849 571759092 1244 1 0.0803858520900322 RFvsST 218049 829541507 829323459 no 653.203739210614 TraesCS3B01G375100 chr3B_588694781 chr3B 588694781 T T C C 4 synonymous_variant LOW transcript unique_Triplet 588694268 588696648 2381 2 0.0839983200335993 RFvsST 218049 829541507 829323459 no 131.869324425524 TraesCS3B01G375100 chr3B_588694862 chr3B 588694862 G G T T 4 synonymous_variant LOW transcript unique_Triplet 588694268 588696648 2381 2 0.0839983200335993 RFvsST 218049 829541507 829323459 no 131.869324425524 TraesCS3B01G375400 chr3B_589662297 chr3B 589662297 C C T T 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589658926 chr3B 589658926 C A C A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589658703 chr3B 589658703 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589659649 chr3B 589659649 A A G G 4 missense_variant MODERATE transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589658676 chr3B 589658676 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589661221 chr3B 589661221 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375400 chr3B_589661622 chr3B 589661622 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 589653993 589662609 8617 7 0.0812347684809098 RFvsST 218049 829541507 829323459 no 492.244040071876 TraesCS3B01G375500 chr3B_590294618 chr3B 590294618 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 590291645 590294574 2930 1 0.0341296928327645 RFvsST 218049 829541507 829323459 no 328.198291409016 TraesCS3B01G375800 chr3B_591366918 chr3B 591366918 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 591364945 591366264 1320 2 0.151515151515152 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G375800 chr3B_591366968 chr3B 591366968 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 591364945 591366264 1320 2 0.151515151515152 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G375900 chr3B_591370635 chr3B 591370635 A A T T 4 missense_variant MODERATE transcript non_Triplet 591367186 591371888 4703 2 0.0425260472039124 RFvsST 218049 829541507 829323459 no 216.836467306022 TraesCS3B01G375900 chr3B_591372001 chr3B 591372001 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 591367186 591371888 4703 2 0.0425260472039124 RFvsST 218049 829541507 829323459 no 216.836467306022 TraesCS3B01G376000 chr3B_591457053 chr3B 591457053 T C T C 3 missense_variant MODERATE transcript unique_Triplet 591455200 591460796 5597 1 0.0178667143112382 RFvsST 218049 829541507 829323459 no 41.9166317576809 TraesCS3B01G376300 chr3B_592610053 chr3B 592610053 A G A G 3 synonymous_variant LOW transcript unique_Triplet 592608983 592612412 3430 4 0.116618075801749 RFvsST 218049 829541507 829323459 no 115.276892371342 TraesCS3B01G376300 chr3B_592609380 chr3B 592609380 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 592608983 592612412 3430 4 0.116618075801749 RFvsST 218049 829541507 829323459 no 115.276892371342 TraesCS3B01G376300 chr3B_592609559 chr3B 592609559 A G A G 3 missense_variant MODERATE transcript unique_Triplet 592608983 592612412 3430 4 0.116618075801749 RFvsST 218049 829541507 829323459 no 115.276892371342 TraesCS3B01G376300 chr3B_592609659 chr3B 592609659 G C G C 3 missense_variant MODERATE transcript unique_Triplet 592608983 592612412 3430 4 0.116618075801749 RFvsST 218049 829541507 829323459 no 115.276892371342 TraesCS3B01G378400 chr3B_596430059 chr3B 596430059 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 596429319 596433935 4617 2 0.0433181719731427 RFvsST 218049 829541507 829323459 no 543.043761602945 TraesCS3B01G378400 chr3B_596431322 chr3B 596431322 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 596429319 596433935 4617 2 0.0433181719731427 RFvsST 218049 829541507 829323459 no 543.043761602945 TraesCS3B01G378500 chr3B_596599347 chr3B 596599347 C A C A 3 missense_variant MODERATE transcript unique_Triplet 596598975 596600968 1994 1 0.0501504513540622 RFvsST 218049 829541507 829323459 no 33.99365493119 TraesCS3B01G379100 chr3B_597048441 chr3B 597048441 C C A A 4 stop_gained HIGH transcript unique_Triplet 597048394 597048720 327 1 0.305810397553517 RFvsST 218049 829541507 829323459 no 10.6492770484425 TraesCS3B01G379200 chr3B_597089161 chr3B 597089161 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 597087924 597090275 2352 1 0.0425170068027211 RFvsST 218049 829541507 829323459 no 300.733459866577 TraesCS3B01G380000 chr3B_597573598 chr3B 597573598 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 597573664 597574305 642 3 0.467289719626168 RFvsST 218049 829541507 829323459 no 73.6090157703089 TraesCS3B01G380000 chr3B_597574205 chr3B 597574205 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 597573664 597574305 642 3 0.467289719626168 RFvsST 218049 829541507 829323459 no 73.6090157703089 TraesCS3B01G380000 chr3B_597574300 chr3B 597574300 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 597573664 597574305 642 3 0.467289719626168 RFvsST 218049 829541507 829323459 no 73.6090157703089 TraesCS3B01G380400 chr3B_597840836 chr3B 597840836 G G A A 4 synonymous_variant LOW transcript unique_Triplet 597840095 597841189 1095 1 0.091324200913242 RFvsST 218049 829541507 829323459 no 153.814747330582 TraesCS3B01G380500 chr3B_598112092 chr3B 598112092 A A C C 4 missense_variant MODERATE transcript unique_Triplet 598111238 598112738 1501 1 0.0666222518321119 RFvsST 218049 829541507 829323459 no 139.25368672242 TraesCS3B01G381100 chr3B_598910197 chr3B 598910197 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 598908462 598910630 2169 2 0.0922083909635777 RFvsST 218049 829541507 829323459 no 96.4596745698422 TraesCS3B01G381100 chr3B_598909060 chr3B 598909060 G G C C 4 missense_variant MODERATE transcript unique_Triplet 598908462 598910630 2169 2 0.0922083909635777 RFvsST 218049 829541507 829323459 no 96.4596745698422 TraesCS3B01G382400 chr3B_602359867 chr3B 602359867 G G A A 4 missense_variant MODERATE transcript unique_Triplet 602356235 602360029 3795 1 0.0263504611330698 RFvsST 218049 829541507 829323459 no 4415.37275867207 TraesCS3B01G382600 chr3B_602366792 chr3B 602366792 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 602364977 602366668 1692 3 0.177304964539007 RFvsST 218049 829541507 829323459 no 181.75429386917 TraesCS3B01G382600 chr3B_602365098 chr3B 602365098 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 602364977 602366668 1692 3 0.177304964539007 RFvsST 218049 829541507 829323459 no 181.75429386917 TraesCS3B01G382600 chr3B_602365455 chr3B 602365455 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 602364977 602366668 1692 3 0.177304964539007 RFvsST 218049 829541507 829323459 no 181.75429386917 TraesCS3B01G382900 chr3B_602584213 chr3B 602584213 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 602583304 602588140 4837 5 0.103369857349597 RFvsST 218049 829541507 829323459 no 57.6618153118801 TraesCS3B01G382900 chr3B_602587819 chr3B 602587819 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 602583304 602588140 4837 5 0.103369857349597 RFvsST 218049 829541507 829323459 no 57.6618153118801 TraesCS3B01G382900 chr3B_602584264 chr3B 602584264 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 602583304 602588140 4837 5 0.103369857349597 RFvsST 218049 829541507 829323459 no 57.6618153118801 TraesCS3B01G382900 chr3B_602588012 chr3B 602588012 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 602583304 602588140 4837 5 0.103369857349597 RFvsST 218049 829541507 829323459 no 57.6618153118801 TraesCS3B01G382900 chr3B_602587843 chr3B 602587843 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 602583304 602588140 4837 5 0.103369857349597 RFvsST 218049 829541507 829323459 no 57.6618153118801 TraesCS3B01G383300 chr3B_603448170 chr3B 603448170 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603448215 603451303 3089 5 0.161864681126578 RFvsST 218049 829541507 829323459 no 503.532222605245 TraesCS3B01G383300 chr3B_603448159 chr3B 603448159 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603448215 603451303 3089 5 0.161864681126578 RFvsST 218049 829541507 829323459 no 503.532222605245 TraesCS3B01G383300 chr3B_603448039 chr3B 603448039 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603448215 603451303 3089 5 0.161864681126578 RFvsST 218049 829541507 829323459 no 503.532222605245 TraesCS3B01G383300 chr3B_603448025 chr3B 603448025 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603448215 603451303 3089 5 0.161864681126578 RFvsST 218049 829541507 829323459 no 503.532222605245 TraesCS3B01G383300 chr3B_603448082 chr3B 603448082 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603448215 603451303 3089 5 0.161864681126578 RFvsST 218049 829541507 829323459 no 503.532222605245 TraesCS3B01G383500 chr3B_603464311 chr3B 603464311 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 603464438 603467942 3505 2 0.0570613409415121 RFvsST 218049 829541507 829323459 no 100.076833223201 TraesCS3B01G383500 chr3B_603467743 chr3B 603467743 A A G G 4 missense_variant MODERATE transcript unique_Triplet 603464438 603467942 3505 2 0.0570613409415121 RFvsST 218049 829541507 829323459 no 100.076833223201 TraesCS3B01G383700 chr3B_603571565 chr3B 603571565 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 603570727 603574405 3679 4 0.10872519706442 RFvsST 218049 829541507 829323459 no 128.210806154112 TraesCS3B01G383700 chr3B_603574082 chr3B 603574082 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 603570727 603574405 3679 4 0.10872519706442 RFvsST 218049 829541507 829323459 no 128.210806154112 TraesCS3B01G383700 chr3B_603574249 chr3B 603574249 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 603570727 603574405 3679 4 0.10872519706442 RFvsST 218049 829541507 829323459 no 128.210806154112 TraesCS3B01G383700 chr3B_603574387 chr3B 603574387 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 603570727 603574405 3679 4 0.10872519706442 RFvsST 218049 829541507 829323459 no 128.210806154112 TraesCS3B01G383800 chr3B_603601603 chr3B 603601603 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 603601598 603607868 6271 1 0.0159464200287036 RFvsST 218049 829541507 829323459 no 67.6857859315535 TraesCS3B01G383900 chr3B_603825973 chr3B 603825973 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 603830335 603833538 3204 3 0.0936329588014981 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G383900 chr3B_603826058 chr3B 603826058 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 603830335 603833538 3204 3 0.0936329588014981 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G383900 chr3B_603826900 chr3B 603826900 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 603830335 603833538 3204 3 0.0936329588014981 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G384300 chr3B_604271042 chr3B 604271042 C C T T 4 missense_variant MODERATE transcript unique_Triplet 604269098 604271062 1965 2 0.101781170483461 RFvsST 218049 829541507 829323459 no 102.934140682896 TraesCS3B01G384300 chr3B_604271051 chr3B 604271051 A A G G 4 missense_variant MODERATE transcript unique_Triplet 604269098 604271062 1965 2 0.101781170483461 RFvsST 218049 829541507 829323459 no 102.934140682896 TraesCS3B01G384400 chr3B_604271667 chr3B 604271667 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 604271309 604274689 3381 1 0.0295770482105886 RFvsST 218049 829541507 829323459 no 187.400554992765 TraesCS3B01G385000 chr3B_605022387 chr3B 605022387 C C T T 4 missense_variant MODERATE transcript unique_Triplet 605021416 605026331 4916 5 0.101708706265256 RFvsST 218049 829541507 829323459 no 35.8549368891434 TraesCS3B01G385000 chr3B_605025536 chr3B 605025536 C C T T 4 synonymous_variant LOW transcript unique_Triplet 605021416 605026331 4916 5 0.101708706265256 RFvsST 218049 829541507 829323459 no 35.8549368891434 TraesCS3B01G385000 chr3B_605023925 chr3B 605023925 A A G G 4 synonymous_variant LOW transcript unique_Triplet 605021416 605026331 4916 5 0.101708706265256 RFvsST 218049 829541507 829323459 no 35.8549368891434 TraesCS3B01G385000 chr3B_605023941 chr3B 605023941 G G A A 4 missense_variant MODERATE transcript unique_Triplet 605021416 605026331 4916 5 0.101708706265256 RFvsST 218049 829541507 829323459 no 35.8549368891434 TraesCS3B01G385000 chr3B_605025608 chr3B 605025608 T T G G 4 synonymous_variant LOW transcript unique_Triplet 605021416 605026331 4916 5 0.101708706265256 RFvsST 218049 829541507 829323459 no 35.8549368891434 TraesCS3B01G385100 chr3B_605270923 chr3B 605270923 A A T T 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385100 chr3B_605269789 chr3B 605269789 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385100 chr3B_605269723 chr3B 605269723 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385100 chr3B_605271210 chr3B 605271210 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385100 chr3B_605267205 chr3B 605267205 G G C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385100 chr3B_605267327 chr3B 605267327 G G T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 605267200 605270969 3770 6 0.159151193633952 RFvsST 218049 829541507 829323459 no 474.977505112666 TraesCS3B01G385500 chr3B_605665851 chr3B 605665851 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 605655549 605665405 9857 3 0.0304352236988942 RFvsST 218049 829541507 829323459 no 103.962038984281 TraesCS3B01G385500 chr3B_605664574 chr3B 605664574 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 605655549 605665405 9857 3 0.0304352236988942 RFvsST 218049 829541507 829323459 no 103.962038984281 TraesCS3B01G385500 chr3B_605659436 chr3B 605659436 C C T T 4 missense_variant MODERATE transcript unique_Triplet 605655549 605665405 9857 3 0.0304352236988942 RFvsST 218049 829541507 829323459 no 103.962038984281 TraesCS3B01G385900 chr3B_606170246 chr3B 606170246 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 606165134 606170384 5251 1 0.0190439916206437 RFvsST 218049 829541507 829323459 no 99.03055589475 TraesCS3B01G387400 chr3B_609347821 chr3B 609347821 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 609339484 609349655 10172 1 0.00983090837593394 RFvsST 218049 829541507 829323459 no 117.841701066721 TraesCS3B01G388600 chr3B_611677399 chr3B 611677399 A A G G 4 synonymous_variant LOW transcript unique_Triplet 611676518 611678686 2169 1 0.0461041954817888 RFvsST 218049 829541507 829323459 no 259.463688911084 TraesCS3B01G389800 chr3B_613804740 chr3B 613804740 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 613802432 613805154 2723 1 0.0367242012486228 RFvsST 218049 829541507 829323459 no 26.3276435099971 TraesCS3B01G392000 chr3B_617683248 chr3B 617683248 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 617677101 617680685 3585 2 0.0557880055788006 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G392000 chr3B_617683125 chr3B 617683125 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 617677101 617680685 3585 2 0.0557880055788006 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G392100 chr3B_617681785 chr3B 617681785 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 617681891 617683117 1227 2 0.162999185004075 RFvsST 218049 829541507 829323459 no 9.76016053936924 TraesCS3B01G392100 chr3B_617682871 chr3B 617682871 G A G A 3 synonymous_variant LOW transcript unique_Triplet 617681891 617683117 1227 2 0.162999185004075 RFvsST 218049 829541507 829323459 no 9.76016053936924 TraesCS3B01G392600 chr3B_618149052 chr3B 618149052 C T C T 3 missense_variant MODERATE transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618149558 chr3B 618149558 G A G A 3 synonymous_variant LOW transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618149429 chr3B 618149429 T C T C 3 synonymous_variant LOW transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618150966 chr3B 618150966 C G C G 3 missense_variant MODERATE transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618151049 chr3B 618151049 C T C T 3 synonymous_variant LOW transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618151165 chr3B 618151165 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G392600 chr3B_618150125 chr3B 618150125 G C G C 3 synonymous_variant LOW transcript unique_Triplet 618148584 618151263 2680 7 0.261194029850746 RFvsST 218049 829541507 829323459 no 965.661264598177 TraesCS3B01G394400 chr3B_621534687 chr3B 621534687 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 621534670 621536229 1560 1 0.0641025641025641 RFvsST 218049 829541507 829323459 no 79.2190645864043 TraesCS3B01G394600 chr3B_621937934 chr3B 621937934 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 621936424 621938138 1715 2 0.116618075801749 RFvsST 218049 829541507 829323459 no 155.050864182033 TraesCS3B01G394600 chr3B_621937866 chr3B 621937866 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 621936424 621938138 1715 2 0.116618075801749 RFvsST 218049 829541507 829323459 no 155.050864182033 TraesCS3B01G395000 chr3B_622400232 chr3B 622400232 G G A A 4 synonymous_variant LOW transcript unique_Triplet 622394731 622400530 5800 3 0.0517241379310345 RFvsST 218049 829541507 829323459 no 209.566297587267 TraesCS3B01G395000 chr3B_622400094 chr3B 622400094 C C T T 4 missense_variant MODERATE transcript unique_Triplet 622394731 622400530 5800 3 0.0517241379310345 RFvsST 218049 829541507 829323459 no 209.566297587267 TraesCS3B01G395000 chr3B_622399689 chr3B 622399689 G G A A 4 missense_variant MODERATE transcript unique_Triplet 622394731 622400530 5800 3 0.0517241379310345 RFvsST 218049 829541507 829323459 no 209.566297587267 TraesCS3B01G395200 chr3B_622761177 chr3B 622761177 A A G G 4 missense_variant MODERATE transcript unique_Triplet 622760007 622764564 4558 1 0.0219394471259324 RFvsST 218049 829541507 829323459 no 34.9223684809948 TraesCS3B01G395300 chr3B_622777812 chr3B 622777812 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 622770364 622777781 7418 2 0.0269614451334592 RFvsST 218049 829541507 829323459 no 132.618077748026 TraesCS3B01G395300 chr3B_622774976 chr3B 622774976 T T C C 4 synonymous_variant LOW transcript unique_Triplet 622770364 622777781 7418 2 0.0269614451334592 RFvsST 218049 829541507 829323459 no 132.618077748026 TraesCS3B01G395400 chr3B_623152200 chr3B 623152200 T T A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 623148800 623150947 2148 3 0.139664804469274 RFvsST 218049 829541507 829323459 no 635.213670690485 TraesCS3B01G395400 chr3B_623149122 chr3B 623149122 T T G G 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 623148800 623150947 2148 3 0.139664804469274 RFvsST 218049 829541507 829323459 no 635.213670690485 TraesCS3B01G395400 chr3B_623149184 chr3B 623149184 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 623148800 623150947 2148 3 0.139664804469274 RFvsST 218049 829541507 829323459 no 635.213670690485 TraesCS3B01G395500 chr3B_623158369 chr3B 623158369 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 623152292 623158434 6143 2 0.0325573823864561 RFvsST 218049 829541507 829323459 no 23.0290170288752 TraesCS3B01G395500 chr3B_623152457 chr3B 623152457 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 623152292 623158434 6143 2 0.0325573823864561 RFvsST 218049 829541507 829323459 no 23.0290170288752 TraesCS3B01G395600 chr3B_623654517 chr3B 623654517 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 623654538 623658750 4213 1 0.0237360550676478 RFvsST 218049 829541507 829323459 no 845.845018240423 TraesCS3B01G396700 chr3B_625895907 chr3B 625895907 G C G C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 625894146 625895988 1843 4 0.21703743895822 RFvsST 218049 829541507 829323459 no 263.835606368929 TraesCS3B01G396700 chr3B_625893980 chr3B 625893980 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 625894146 625895988 1843 4 0.21703743895822 RFvsST 218049 829541507 829323459 no 263.835606368929 TraesCS3B01G396700 chr3B_625894171 chr3B 625894171 T G T G 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 625894146 625895988 1843 4 0.21703743895822 RFvsST 218049 829541507 829323459 no 263.835606368929 TraesCS3B01G396700 chr3B_625894715 chr3B 625894715 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 625894146 625895988 1843 4 0.21703743895822 RFvsST 218049 829541507 829323459 no 263.835606368929 TraesCS3B01G396900 chr3B_627199338 chr3B 627199338 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 627199560 627203279 3720 2 0.0537634408602151 RFvsST 218049 829541507 829323459 no 6.34802783588356 TraesCS3B01G396900 chr3B_627202592 chr3B 627202592 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 627199560 627203279 3720 2 0.0537634408602151 RFvsST 218049 829541507 829323459 no 6.34802783588356 TraesCS3B01G397000 chr3B_627211316 chr3B 627211316 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 627211213 627214210 2998 1 0.0333555703802535 RFvsST 218049 829541507 829323459 no 100.52728402374 TraesCS3B01G397200 chr3B_627714678 chr3B 627714678 C G C G 3 missense_variant MODERATE transcript unique_Triplet 627712400 627715416 3017 2 0.0662910175671197 RFvsST 218049 829541507 829323459 no 297.523621039992 TraesCS3B01G397200 chr3B_627712343 chr3B 627712343 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 627712400 627715416 3017 2 0.0662910175671197 RFvsST 218049 829541507 829323459 no 297.523621039992 TraesCS3B01G397400 chr3B_627749028 chr3B 627749028 A A G G 4 missense_variant MODERATE transcript unique_Triplet 627748608 627749282 675 2 0.296296296296296 RFvsST 218049 829541507 829323459 no 274.902393871072 TraesCS3B01G397400 chr3B_627748989 chr3B 627748989 A A G G 4 missense_variant MODERATE transcript unique_Triplet 627748608 627749282 675 2 0.296296296296296 RFvsST 218049 829541507 829323459 no 274.902393871072 TraesCS3B01G397500 chr3B_627907072 chr3B 627907072 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 627904433 627906283 1851 2 0.108049702863317 RFvsST 218049 829541507 829323459 no 4.93523684284092 TraesCS3B01G397500 chr3B_627906967 chr3B 627906967 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 627904433 627906283 1851 2 0.108049702863317 RFvsST 218049 829541507 829323459 no 4.93523684284092 TraesCS3B01G397600 chr3B_627907772 chr3B 627907772 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 627907215 627910988 3774 3 0.0794912559618442 RFvsST 218049 829541507 829323459 no 277.648887713773 TraesCS3B01G397600 chr3B_627911087 chr3B 627911087 A A C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 627907215 627910988 3774 3 0.0794912559618442 RFvsST 218049 829541507 829323459 no 277.648887713773 TraesCS3B01G397600 chr3B_627908084 chr3B 627908084 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 627907215 627910988 3774 3 0.0794912559618442 RFvsST 218049 829541507 829323459 no 277.648887713773 TraesCS3B01G398100 chr3B_628475929 chr3B 628475929 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 628470223 628474983 4761 1 0.0210039907582441 RFvsST 218049 829541507 829323459 no 16.1214085811741 TraesCS3B01G398900 chr3B_630008363 chr3B 630008363 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 630004303 630007115 2813 2 0.0710984713828653 RFvsST 218049 829541507 829323459 no 356.905475485901 TraesCS3B01G398900 chr3B_630008362 chr3B 630008362 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 630004303 630007115 2813 2 0.0710984713828653 RFvsST 218049 829541507 829323459 no 356.905475485901 TraesCS3B01G399100 chr3B_630306189 chr3B 630306189 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 630306193 630307341 1149 1 0.0870322019147084 RFvsST 218049 829541507 829323459 no 5035.6789344324 TraesCS3B01G399200 chr3B_630366205 chr3B 630366205 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 630363997 630367153 3157 3 0.095026924295217 RFvsST 218049 829541507 829323459 no 603.996736589978 TraesCS3B01G399200 chr3B_630366834 chr3B 630366834 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 630363997 630367153 3157 3 0.095026924295217 RFvsST 218049 829541507 829323459 no 603.996736589978 TraesCS3B01G399200 chr3B_630363947 chr3B 630363947 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 630363997 630367153 3157 3 0.095026924295217 RFvsST 218049 829541507 829323459 no 603.996736589978 TraesCS3B01G399300 chr3B_630400978 chr3B 630400978 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 630400718 630402095 1378 2 0.145137880986938 RFvsST 218049 829541507 829323459 no 464.652245334112 TraesCS3B01G399300 chr3B_630400788 chr3B 630400788 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 630400718 630402095 1378 2 0.145137880986938 RFvsST 218049 829541507 829323459 no 464.652245334112 TraesCS3B01G399400 chr3B_630592744 chr3B 630592744 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 630586886 630588835 1950 2 0.102564102564103 RFvsST 218049 829541507 829323459 no 9.43161173817568 TraesCS3B01G399400 chr3B_630592743 chr3B 630592743 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 630586886 630588835 1950 2 0.102564102564103 RFvsST 218049 829541507 829323459 no 9.43161173817568 TraesCS3B01G399500 chr3B_630592045 chr3B 630592045 G G A A 4 missense_variant MODERATE transcript unique_Triplet 630591591 630592733 1143 1 0.0874890638670166 RFvsST 218049 829541507 829323459 no 275.337903338152 TraesCS3B01G404700 chr3B_640059418 chr3B 640059418 T T G G 4 missense_variant MODERATE transcript unique_Triplet 640056314 640059492 3179 1 0.0314564328405159 RFvsST 218049 829541507 829323459 no 159.847516570241 TraesCS3B01G405800 chr3B_640974280 chr3B 640974280 G A G A 3 missense_variant MODERATE transcript unique_Triplet 640974257 640976729 2473 1 0.0404367165386171 RFvsST 218049 829541507 829323459 no 71.3328934188436 TraesCS3B01G412400 chr3B_648742600 chr3B 648742600 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 648740024 648743959 3936 2 0.0508130081300813 RFvsST 218049 829541507 829323459 no 7.12192721934747 TraesCS3B01G412400 chr3B_648742599 chr3B 648742599 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 648740024 648743959 3936 2 0.0508130081300813 RFvsST 218049 829541507 829323459 no 7.12192721934747 TraesCS3B01G419400 chr3B_655863320 chr3B 655863320 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 655857981 655861202 3222 1 0.0310366232153942 RFvsST 218049 829541507 829323459 no 96.9562677455788 TraesCS3B01G422600 chr3B_659573312 chr3B 659573312 T T C C 4 synonymous_variant LOW transcript unique_Triplet 659572561 659577566 5006 1 0.0199760287654814 RFvsST 218049 829541507 829323459 no 154.376359365985 TraesCS3B01G423200 chr3B_660701373 chr3B 660701373 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 660698526 660701291 2766 1 0.0361532899493854 RFvsST 218049 829541507 829323459 no 823.510447036015 TraesCS3B01G424900 chr3B_662978138 chr3B 662978138 C T C T 3 synonymous_variant LOW transcript unique_Triplet 662975762 662978498 2737 1 0.0365363536719035 RFvsST 218049 829541507 829323459 no 99.6456508841054 TraesCS3B01G426600 chr3B_665255992 chr3B 665255992 C T C T 3 missense_variant MODERATE transcript unique_Triplet 665253213 665256341 3129 2 0.0639181847235538 RFvsST 218049 829541507 829323459 no 208.033205259 TraesCS3B01G426600 chr3B_665255686 chr3B 665255686 C T C T 3 missense_variant MODERATE transcript unique_Triplet 665253213 665256341 3129 2 0.0639181847235538 RFvsST 218049 829541507 829323459 no 208.033205259 TraesCS3B01G432400 chr3B_671669693 chr3B 671669693 A G A G 3 synonymous_variant LOW transcript unique_Triplet 671668397 671671922 3526 5 0.141803743618832 RFvsST 218049 829541507 829323459 no 12.6300078256911 TraesCS3B01G432400 chr3B_671672205 chr3B 671672205 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 671668397 671671922 3526 5 0.141803743618832 RFvsST 218049 829541507 829323459 no 12.6300078256911 TraesCS3B01G432400 chr3B_671671927 chr3B 671671927 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 671668397 671671922 3526 5 0.141803743618832 RFvsST 218049 829541507 829323459 no 12.6300078256911 TraesCS3B01G432400 chr3B_671670804 chr3B 671670804 C G C G 3 start_lost&splice_region_variant HIGH transcript unique_Triplet 671668397 671671922 3526 5 0.141803743618832 RFvsST 218049 829541507 829323459 no 12.6300078256911 TraesCS3B01G432400 chr3B_671668452 chr3B 671668452 C T C T 3 missense_variant MODERATE transcript unique_Triplet 671668397 671671922 3526 5 0.141803743618832 RFvsST 218049 829541507 829323459 no 12.6300078256911 TraesCS3B01G432600 chr3B_671750873 chr3B 671750873 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 671748876 671750936 2061 1 0.0485201358563804 RFvsST 218049 829541507 829323459 no 166.943170677295 TraesCS3B01G432700 chr3B_671837939 chr3B 671837939 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671835796 671837923 2128 1 0.0469924812030075 RFvsST 218049 829541507 829323459 no 13.6775132624076 TraesCS3B01G432900 chr3B_671869134 chr3B 671869134 C G C G 3 missense_variant MODERATE transcript unique_Triplet 671866867 671869198 2332 5 0.214408233276158 RFvsST 218049 829541507 829323459 no 41.8889572839437 TraesCS3B01G432900 chr3B_671869151 chr3B 671869151 C G C G 3 synonymous_variant LOW transcript unique_Triplet 671866867 671869198 2332 5 0.214408233276158 RFvsST 218049 829541507 829323459 no 41.8889572839437 TraesCS3B01G432900 chr3B_671868141 chr3B 671868141 C A C A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 671866867 671869198 2332 5 0.214408233276158 RFvsST 218049 829541507 829323459 no 41.8889572839437 TraesCS3B01G432900 chr3B_671869207 chr3B 671869207 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 671866867 671869198 2332 5 0.214408233276158 RFvsST 218049 829541507 829323459 no 41.8889572839437 TraesCS3B01G432900 chr3B_671869154 chr3B 671869154 G T G T 3 synonymous_variant LOW transcript unique_Triplet 671866867 671869198 2332 5 0.214408233276158 RFvsST 218049 829541507 829323459 no 41.8889572839437 TraesCS3B01G433000 chr3B_671997955 chr3B 671997955 T C T C 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671997815 chr3B 671997815 G A G A 3 missense_variant MODERATE transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671997877 chr3B 671997877 C A C A 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671996568 chr3B 671996568 C A C A 3 missense_variant MODERATE transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671996409 chr3B 671996409 G C G C 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671996327 chr3B 671996327 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671997823 chr3B 671997823 A G A G 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671998740 chr3B 671998740 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671998798 chr3B 671998798 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671998604 chr3B 671998604 A G A G 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671997988 chr3B 671997988 T C T C 3 synonymous_variant LOW transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G433000 chr3B_671998651 chr3B 671998651 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671996341 671998649 2309 12 0.519705500216544 RFvsST 218049 829541507 829323459 no 195.901807735006 TraesCS3B01G463300 chr3B_706179947 chr3B 706179947 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 706182711 706185314 2604 3 0.115207373271889 RFvsST 218049 829541507 829323459 no 17.0049405949501 TraesCS3B01G463300 chr3B_706179948 chr3B 706179948 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 706182711 706185314 2604 3 0.115207373271889 RFvsST 218049 829541507 829323459 no 17.0049405949501 TraesCS3B01G463300 chr3B_706180093 chr3B 706180093 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 706182711 706185314 2604 3 0.115207373271889 RFvsST 218049 829541507 829323459 no 17.0049405949501 TraesCS3B01G464700 chr3B_707417494 chr3B 707417494 T T G G 4 synonymous_variant LOW transcript unique_Triplet 707415731 707418135 2405 2 0.0831600831600832 RFvsST 218049 829541507 829323459 no 89.6837050578106 TraesCS3B01G464700 chr3B_707417498 chr3B 707417498 C C T T 4 synonymous_variant LOW transcript unique_Triplet 707415731 707418135 2405 2 0.0831600831600832 RFvsST 218049 829541507 829323459 no 89.6837050578106 TraesCS3B01G465000 chr3B_708177009 chr3B 708177009 T T C C 4 missense_variant MODERATE transcript non_Triplet 708176737 708179926 3190 1 0.0313479623824451 RFvsST 218049 829541507 829323459 no 35.8250073676739 TraesCS3B01G466000 chr3B_708518347 chr3B 708518347 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 708516605 708520879 4275 1 0.0233918128654971 RFvsST 218049 829541507 829323459 no 488.781741790092 TraesCS3B01G469100 chr3B_715888941 chr3B 715888941 G G A A 4 missense_variant MODERATE transcript unique_Triplet 715887306 715892803 5498 1 0.0181884321571481 RFvsST 218049 829541507 829323459 no 179.741337902564 TraesCS3B01G483500 chr3B_730231072 chr3B 730231072 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 730231085 730235345 4261 5 0.117343346632246 RFvsST 218049 829541507 829323459 no 2255.85654869395 TraesCS3B01G483500 chr3B_730231046 chr3B 730231046 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 730231085 730235345 4261 5 0.117343346632246 RFvsST 218049 829541507 829323459 no 2255.85654869395 TraesCS3B01G483500 chr3B_730231101 chr3B 730231101 T T C C 4 missense_variant MODERATE transcript unique_Triplet 730231085 730235345 4261 5 0.117343346632246 RFvsST 218049 829541507 829323459 no 2255.85654869395 TraesCS3B01G483500 chr3B_730231103 chr3B 730231103 C C T T 4 missense_variant MODERATE transcript unique_Triplet 730231085 730235345 4261 5 0.117343346632246 RFvsST 218049 829541507 829323459 no 2255.85654869395 TraesCS3B01G483500 chr3B_730231124 chr3B 730231124 T T G G 4 missense_variant MODERATE transcript unique_Triplet 730231085 730235345 4261 5 0.117343346632246 RFvsST 218049 829541507 829323459 no 2255.85654869395 TraesCS3B01G488400 chr3B_734430792 chr3B 734430792 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 734425467 734430638 5172 1 0.0193348801237432 RFvsST 218049 829541507 829323459 no 373.924796454653 TraesCS3B01G488600 chr3B_734485466 chr3B 734485466 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 734485121 734485330 210 1 0.476190476190476 RFvsST 218049 829541507 829323459 no 29.4795432395873 TraesCS3B01G490900 chr3B_736930412 chr3B 736930412 G G C C 4 synonymous_variant LOW transcript non_Triplet 736925495 736931125 5631 3 0.053276505061268 RFvsST 218049 829541507 829323459 no 203.360500648007 TraesCS3B01G490900 chr3B_736925315 chr3B 736925315 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 736925495 736931125 5631 3 0.053276505061268 RFvsST 218049 829541507 829323459 no 203.360500648007 TraesCS3B01G490900 chr3B_736925316 chr3B 736925316 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 736925495 736931125 5631 3 0.053276505061268 RFvsST 218049 829541507 829323459 no 203.360500648007 TraesCS3B01G492800 chr3B_738622566 chr3B 738622566 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 738624129 738626159 2031 1 0.0492368291482029 RFvsST 218049 829541507 829323459 no 9.66232355994516 TraesCS3B01G493200 chr3B_738753356 chr3B 738753356 G T G T 3 synonymous_variant LOW transcript unique_Triplet 738746431 738754923 8493 5 0.0588720122453785 RFvsST 218049 829541507 829323459 no 251.599127593135 TraesCS3B01G493200 chr3B_738749153 chr3B 738749153 G A G A 3 missense_variant MODERATE transcript unique_Triplet 738746431 738754923 8493 5 0.0588720122453785 RFvsST 218049 829541507 829323459 no 251.599127593135 TraesCS3B01G493200 chr3B_738754465 chr3B 738754465 A T A T 3 missense_variant MODERATE transcript unique_Triplet 738746431 738754923 8493 5 0.0588720122453785 RFvsST 218049 829541507 829323459 no 251.599127593135 TraesCS3B01G493200 chr3B_738754913 chr3B 738754913 T G T G 3 missense_variant MODERATE transcript unique_Triplet 738746431 738754923 8493 5 0.0588720122453785 RFvsST 218049 829541507 829323459 no 251.599127593135 TraesCS3B01G493200 chr3B_738753637 chr3B 738753637 C A C A 3 missense_variant MODERATE transcript unique_Triplet 738746431 738754923 8493 5 0.0588720122453785 RFvsST 218049 829541507 829323459 no 251.599127593135 TraesCS3B01G493700 chr3B_739024903 chr3B 739024903 G C G C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 739024486 739027068 2583 1 0.0387146728610143 RFvsST 218049 829541507 829323459 no 115.258010927226 TraesCS3B01G496600 chr3B_740040208 chr3B 740040208 C G C G 3 missense_variant MODERATE transcript non_Triplet 740039597 740042481 2885 1 0.0346620450606586 RFvsST 218049 829541507 829323459 no 191.154088324798 TraesCS3B01G497300 chr3B_741302720 chr3B 741302720 T G T G 3 missense_variant MODERATE transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497300 chr3B_741302808 chr3B 741302808 T G T G 3 missense_variant MODERATE transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497300 chr3B_741303819 chr3B 741303819 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497300 chr3B_741303791 chr3B 741303791 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497300 chr3B_741302319 chr3B 741302319 C T C T 3 synonymous_variant LOW transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497300 chr3B_741301242 chr3B 741301242 T C T C 3 synonymous_variant LOW transcript unique_Triplet 741301171 741303775 2605 6 0.230326295585413 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G497900 chr3B_741503975 chr3B 741503975 T C T C 3 synonymous_variant LOW transcript unique_Triplet 741502941 741504142 1202 1 0.0831946755407654 RFvsST 218049 829541507 829323459 no 56.1348327987863 TraesCS3B01G498300 chr3B_741867194 chr3B 741867194 A T A T 3 missense_variant MODERATE transcript unique_Triplet 741862213 741869715 7503 1 0.0133280021324803 RFvsST 218049 829541507 829323459 no 238.879599542837 TraesCS3B01G498500 chr3B_742106753 chr3B 742106753 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 742100610 742101864 1255 1 0.0796812749003984 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G498800 chr3B_742171244 chr3B 742171244 G A G A 3 missense_variant MODERATE transcript unique_Triplet 742170489 742173343 2855 3 0.10507880910683 RFvsST 218049 829541507 829323459 no 331.681880188997 TraesCS3B01G498800 chr3B_742170543 chr3B 742170543 C T C T 3 synonymous_variant LOW transcript unique_Triplet 742170489 742173343 2855 3 0.10507880910683 RFvsST 218049 829541507 829323459 no 331.681880188997 TraesCS3B01G498800 chr3B_742173320 chr3B 742173320 A G A G 3 synonymous_variant LOW transcript unique_Triplet 742170489 742173343 2855 3 0.10507880910683 RFvsST 218049 829541507 829323459 no 331.681880188997 TraesCS3B01G506800 chr3B_750355463 chr3B 750355463 G G A A 4 missense_variant MODERATE transcript unique_Triplet 750354624 750358038 3415 1 0.0292825768667643 RFvsST 218049 829541507 829323459 no 75.7582905645035 TraesCS3B01G511800 chr3B_755324011 chr3B 755324011 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 755313376 755324388 11013 5 0.0454008898574412 RFvsST 218049 829541507 829323459 no 46.0768475110428 TraesCS3B01G511800 chr3B_755315240 chr3B 755315240 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 755313376 755324388 11013 5 0.0454008898574412 RFvsST 218049 829541507 829323459 no 46.0768475110428 TraesCS3B01G511800 chr3B_755317367 chr3B 755317367 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 755313376 755324388 11013 5 0.0454008898574412 RFvsST 218049 829541507 829323459 no 46.0768475110428 TraesCS3B01G511800 chr3B_755323746 chr3B 755323746 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 755313376 755324388 11013 5 0.0454008898574412 RFvsST 218049 829541507 829323459 no 46.0768475110428 TraesCS3B01G511800 chr3B_755324044 chr3B 755324044 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 755313376 755324388 11013 5 0.0454008898574412 RFvsST 218049 829541507 829323459 no 46.0768475110428 TraesCS3B01G511900 chr3B_755451720 chr3B 755451720 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 755449622 755454604 4983 4 0.0802729279550472 RFvsST 218049 829541507 829323459 no 164.542884435587 TraesCS3B01G511900 chr3B_755449344 chr3B 755449344 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 755449622 755454604 4983 4 0.0802729279550472 RFvsST 218049 829541507 829323459 no 164.542884435587 TraesCS3B01G511900 chr3B_755452109 chr3B 755452109 T T C C 4 missense_variant MODERATE transcript unique_Triplet 755449622 755454604 4983 4 0.0802729279550472 RFvsST 218049 829541507 829323459 no 164.542884435587 TraesCS3B01G511900 chr3B_755452122 chr3B 755452122 A A T T 4 synonymous_variant LOW transcript unique_Triplet 755449622 755454604 4983 4 0.0802729279550472 RFvsST 218049 829541507 829323459 no 164.542884435587 TraesCS3B01G516000 chr3B_757921197 chr3B 757921197 C C G G 4 synonymous_variant LOW transcript unique_Triplet 757921131 757925998 4868 1 0.0205423171733772 RFvsST 218049 829541507 829323459 no 112.268510150608 TraesCS3B01G518000 chr3B_761004183 chr3B 761004183 G G A A 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 761002991 761005917 2927 1 0.0341646737273659 RFvsST 218049 829541507 829323459 no 43.6310963250428 TraesCS3B01G530000 chr3B_771254042 chr3B 771254042 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 771249906 771254026 4121 1 0.024265954865324 RFvsST 218049 829541507 829323459 no 133.718543364951 TraesCS3B01G531400 chr3B_772399852 chr3B 772399852 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772400113 chr3B 772400113 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772400095 chr3B 772400095 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772400105 chr3B 772400105 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772400119 chr3B 772400119 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772397484 chr3B 772397484 T T C C 4 synonymous_variant LOW transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772397592 chr3B 772397592 C C T T 4 synonymous_variant LOW transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772396721 chr3B 772396721 C C G G 4 missense_variant MODERATE transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772399691 chr3B 772399691 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531400 chr3B_772397619 chr3B 772397619 T T C C 4 synonymous_variant LOW transcript unique_Triplet 772396633 772399678 3046 10 0.328299409061064 RFvsST 218049 829541507 829323459 no 67.7309353168949 TraesCS3B01G531500 chr3B_772401674 chr3B 772401674 C C T T 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772400460 chr3B 772400460 C C G G 4 missense_variant MODERATE transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772401656 chr3B 772401656 T T G G 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772401692 chr3B 772401692 G G A A 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772400346 chr3B 772400346 C C G G 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772400343 chr3B 772400343 G G C C 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772401547 chr3B 772401547 G G A A 4 synonymous_variant LOW transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531500 chr3B_772400341 chr3B 772400341 G G C C 4 missense_variant MODERATE transcript unique_Triplet 772400202 772401712 1511 8 0.529450694904037 RFvsST 218049 829541507 829323459 no 372.522899334413 TraesCS3B01G531700 chr3B_772467153 chr3B 772467153 C C G G 4 synonymous_variant LOW transcript non_Triplet 772465570 772467486 1917 2 0.104329681794471 RFvsST 218049 829541507 829323459 no 400.100912372669 TraesCS3B01G531700 chr3B_772466076 chr3B 772466076 C C A A 4 synonymous_variant LOW transcript non_Triplet 772465570 772467486 1917 2 0.104329681794471 RFvsST 218049 829541507 829323459 no 400.100912372669 TraesCS3B01G531900 chr3B_772664088 chr3B 772664088 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 772659006 772663003 3998 1 0.0250125062531266 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G532000 chr3B_772664752 chr3B 772664752 C C T T 4 missense_variant MODERATE transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G532000 chr3B_772676026 chr3B 772676026 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G532000 chr3B_772669168 chr3B 772669168 A A G G 4 synonymous_variant LOW transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G532000 chr3B_772665945 chr3B 772665945 C C G G 4 synonymous_variant LOW transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G532000 chr3B_772671496 chr3B 772671496 A A G G 4 synonymous_variant LOW transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G532000 chr3B_772665592 chr3B 772665592 C C G G 4 missense_variant MODERATE transcript non_Triplet 772664329 772674965 10637 6 0.05640688163956 RFvsST 218049 829541507 829323459 no 1668.08435742957 TraesCS3B01G535900 chr3B_775830199 chr3B 775830199 A G A G 3 missense_variant MODERATE transcript unique_Triplet 775825356 775830536 5181 4 0.077205172746574 RFvsST 218049 829541507 829323459 no 20.8103175090608 TraesCS3B01G535900 chr3B_775830901 chr3B 775830901 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775825356 775830536 5181 4 0.077205172746574 RFvsST 218049 829541507 829323459 no 20.8103175090608 TraesCS3B01G535900 chr3B_775830972 chr3B 775830972 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775825356 775830536 5181 4 0.077205172746574 RFvsST 218049 829541507 829323459 no 20.8103175090608 TraesCS3B01G535900 chr3B_775830727 chr3B 775830727 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 775825356 775830536 5181 4 0.077205172746574 RFvsST 218049 829541507 829323459 no 20.8103175090608 TraesCS3B01G536500 chr3B_776358340 chr3B 776358340 C C G G 4 synonymous_variant LOW transcript unique_Triplet 776356300 776361279 4980 1 0.0200803212851406 RFvsST 218049 829541507 829323459 no 236.21441152748 TraesCS3B01G536600 chr3B_776534160 chr3B 776534160 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 776534286 776534879 594 2 0.336700336700337 RFvsST 218049 829541507 829323459 no 179.939507419257 TraesCS3B01G536600 chr3B_776534526 chr3B 776534526 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 776534286 776534879 594 2 0.336700336700337 RFvsST 218049 829541507 829323459 no 179.939507419257 TraesCS3B01G541300 chr3B_779579836 chr3B 779579836 C T C T 3 missense_variant MODERATE transcript non_Triplet 779577622 779579923 2302 1 0.0434404865334492 RFvsST 218049 829541507 829323459 no 1429.16154576426 TraesCS3B01G543500 chr3B_781046761 chr3B 781046761 T C T C 3 synonymous_variant LOW transcript non_Triplet 781042686 781048893 6208 2 0.0322164948453608 RFvsST 218049 829541507 829323459 no 375.814279071414 TraesCS3B01G543500 chr3B_781046286 chr3B 781046286 G A G A 3 synonymous_variant LOW transcript non_Triplet 781042686 781048893 6208 2 0.0322164948453608 RFvsST 218049 829541507 829323459 no 375.814279071414 TraesCS3B01G543700 chr3B_781345443 chr3B 781345443 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 781344649 781345430 782 1 0.127877237851662 RFvsST 218049 829541507 829323459 no 37.0819511970631 TraesCS3B01G547900 chr3B_783467094 chr3B 783467094 G G C C 4 synonymous_variant LOW transcript non_Triplet 783466240 783469405 3166 4 0.126342387871131 RFvsST 218049 829541507 829323459 no 304.949889110077 TraesCS3B01G547900 chr3B_783468019 chr3B 783468019 G A G A 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 783466240 783469405 3166 4 0.126342387871131 RFvsST 218049 829541507 829323459 no 304.949889110077 TraesCS3B01G547900 chr3B_783467472 chr3B 783467472 T T C C 4 missense_variant MODERATE transcript non_Triplet 783466240 783469405 3166 4 0.126342387871131 RFvsST 218049 829541507 829323459 no 304.949889110077 TraesCS3B01G547900 chr3B_783468042 chr3B 783468042 A A G G 4 synonymous_variant LOW transcript non_Triplet 783466240 783469405 3166 4 0.126342387871131 RFvsST 218049 829541507 829323459 no 304.949889110077 TraesCS3B01G548000 chr3B_783472149 chr3B 783472149 C C A A 4 synonymous_variant LOW transcript non_Triplet 783471897 783475440 3544 1 0.028216704288939 RFvsST 218049 829541507 829323459 no 37.9486571151758 TraesCS3B01G548300 chr3B_783870875 chr3B 783870875 A A G G 4 missense_variant MODERATE transcript non_Triplet 783869026 783870912 1887 1 0.0529941706412295 RFvsST 218049 829541507 829323459 no 316.432918377589 TraesCS3B01G549400 chr3B_784695146 chr3B 784695146 G G A A 4 missense_variant MODERATE transcript non_Triplet 784691057 784695951 4895 1 0.0204290091930541 RFvsST 218049 829541507 829323459 no 32.9506772395488 TraesCS3B01G558300 chr3B_792804542 chr3B 792804542 C T C T 3 synonymous_variant LOW transcript unique_Triplet 792800928 792818982 18055 4 0.0221545278316256 RFvsST 218049 829541507 829323459 no 295.793299776171 TraesCS3B01G558300 chr3B_792804539 chr3B 792804539 C T C T 3 synonymous_variant LOW transcript unique_Triplet 792800928 792818982 18055 4 0.0221545278316256 RFvsST 218049 829541507 829323459 no 295.793299776171 TraesCS3B01G558300 chr3B_792801577 chr3B 792801577 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 792800928 792818982 18055 4 0.0221545278316256 RFvsST 218049 829541507 829323459 no 295.793299776171 TraesCS3B01G558300 chr3B_792801211 chr3B 792801211 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 792800928 792818982 18055 4 0.0221545278316256 RFvsST 218049 829541507 829323459 no 295.793299776171 TraesCS3B01G561200 chr3B_794867481 chr3B 794867481 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 794864567 794867372 2806 4 0.142551674982181 RFvsST 218049 829541507 829323459 no 323.659734824048 TraesCS3B01G561200 chr3B_794864614 chr3B 794864614 C G C G 3 synonymous_variant LOW transcript non_Triplet 794864567 794867372 2806 4 0.142551674982181 RFvsST 218049 829541507 829323459 no 323.659734824048 TraesCS3B01G561200 chr3B_794867497 chr3B 794867497 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 794864567 794867372 2806 4 0.142551674982181 RFvsST 218049 829541507 829323459 no 323.659734824048 TraesCS3B01G561200 chr3B_794870296 chr3B 794870296 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 794864567 794867372 2806 4 0.142551674982181 RFvsST 218049 829541507 829323459 no 323.659734824048 TraesCS3B01G561300 chr3B_794870508 chr3B 794870508 C G C G 3 synonymous_variant LOW transcript non_Triplet 794867967 794870588 2622 3 0.11441647597254 RFvsST 218049 829541507 829323459 no 73.9576179268483 TraesCS3B01G561300 chr3B_794867970 chr3B 794867970 T C T C 3 synonymous_variant LOW transcript non_Triplet 794867967 794870588 2622 3 0.11441647597254 RFvsST 218049 829541507 829323459 no 73.9576179268483 TraesCS3B01G561300 chr3B_794870493 chr3B 794870493 C G C G 3 synonymous_variant LOW transcript non_Triplet 794867967 794870588 2622 3 0.11441647597254 RFvsST 218049 829541507 829323459 no 73.9576179268483 TraesCS3B01G561700 chr3B_795176452 chr3B 795176452 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 795176514 795178136 1623 3 0.184842883548983 RFvsST 218049 829541507 829323459 no 417.410821591806 TraesCS3B01G561700 chr3B_795176648 chr3B 795176648 G A G A 3 synonymous_variant LOW transcript non_Triplet 795176514 795178136 1623 3 0.184842883548983 RFvsST 218049 829541507 829323459 no 417.410821591806 TraesCS3B01G561700 chr3B_795176460 chr3B 795176460 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 795176514 795178136 1623 3 0.184842883548983 RFvsST 218049 829541507 829323459 no 417.410821591806 TraesCS3B01G563500 chr3B_796501868 chr3B 796501868 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 796501949 796509465 7517 1 0.0133031794598909 RFvsST 218049 829541507 829323459 no 739.978854661569 TraesCS3B01G578200 chr3B_807813437 chr3B 807813437 T T G G 4 intron_variant MODIFIER transcript non_Triplet 807812908 807813694 787 1 0.127064803049555 RFvsST 218049 829541507 829323459 no 4475.07850528611 TraesCS3B01G579900 chr3B_809176216 chr3B 809176216 G A G A 3 missense_variant MODERATE transcript non_Triplet 809175469 809177401 1933 1 0.0517330574236937 RFvsST 218049 829541507 829323459 no 33.7360203247082 TraesCS3B01G594300 chr3B_817577883 chr3B 817577883 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G594300 chr3B_817577514 chr3B 817577514 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G594300 chr3B_817577611 chr3B 817577611 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G594300 chr3B_817577529 chr3B 817577529 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G594300 chr3B_817577622 chr3B 817577622 G C A C,A 6 synonymous_variant LOW transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G594300 chr3B_817577508 chr3B 817577508 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 817577365 817578228 864 6 0.694444444444444 RFvsST 218049 829541507 829323459 no 382.460606484431 TraesCS3B01G595200 chr3B_818276696 chr3B 818276696 A C A C 3 synonymous_variant LOW transcript non_Triplet 818275851 818277457 1607 2 0.124455507156192 RFvsST 218049 829541507 829323459 no 243.835516931979 TraesCS3B01G595200 chr3B_818276657 chr3B 818276657 G A G A 3 synonymous_variant LOW transcript non_Triplet 818275851 818277457 1607 2 0.124455507156192 RFvsST 218049 829541507 829323459 no 243.835516931979 TraesCS3B01G597500 chr3B_819788966 chr3B 819788966 C C T T 4 synonymous_variant LOW transcript unique_Triplet 819788128 819792885 4758 5 0.105086170659941 RFvsST 218049 829541507 829323459 no 684.332628866448 TraesCS3B01G597500 chr3B_819789521 chr3B 819789521 T T C C 4 synonymous_variant LOW transcript unique_Triplet 819788128 819792885 4758 5 0.105086170659941 RFvsST 218049 829541507 829323459 no 684.332628866448 TraesCS3B01G597500 chr3B_819788224 chr3B 819788224 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 819788128 819792885 4758 5 0.105086170659941 RFvsST 218049 829541507 829323459 no 684.332628866448 TraesCS3B01G597500 chr3B_819790890 chr3B 819790890 A A G G 4 synonymous_variant LOW transcript unique_Triplet 819788128 819792885 4758 5 0.105086170659941 RFvsST 218049 829541507 829323459 no 684.332628866448 TraesCS3B01G597500 chr3B_819792777 chr3B 819792777 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 819788128 819792885 4758 5 0.105086170659941 RFvsST 218049 829541507 829323459 no 684.332628866448 TraesCS3B01G597600 chr3B_819811556 chr3B 819811556 C C T T 4 synonymous_variant LOW transcript unique_Triplet 819809430 819811957 2528 1 0.0395569620253165 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G597800 chr3B_819896736 chr3B 819896736 C C A A 4 missense_variant MODERATE transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897352 chr3B 819897352 C C T T 4 missense_variant MODERATE transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897806 chr3B 819897806 A A G G 4 synonymous_variant LOW transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819898429 chr3B 819898429 A A G G 4 synonymous_variant LOW transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897842 chr3B 819897842 G G A A 4 synonymous_variant LOW transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897491 chr3B 819897491 C C T T 4 synonymous_variant LOW transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897758 chr3B 819897758 A A G G 4 synonymous_variant LOW transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897716 chr3B 819897716 G G C C 4 missense_variant MODERATE transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597800 chr3B_819897517 chr3B 819897517 T T C C 4 missense_variant MODERATE transcript unique_Triplet 819896710 819901740 5031 9 0.178890876565295 RFvsST 218049 829541507 829323459 no 157.314361180729 TraesCS3B01G597900 chr3B_819929972 chr3B 819929972 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 819930084 819934420 4337 1 0.0230574129582661 RFvsST 218049 829541507 829323459 no 9.15120302337164 TraesCS3B01G600300 chr3B_820905787 chr3B 820905787 G G A A 4 missense_variant MODERATE transcript non_Triplet 820902164 820906114 3951 3 0.0759301442672741 RFvsST 218049 829541507 829323459 no 51.3014927911265 TraesCS3B01G600300 chr3B_820905474 chr3B 820905474 G C G C 3 synonymous_variant LOW transcript non_Triplet 820902164 820906114 3951 3 0.0759301442672741 RFvsST 218049 829541507 829323459 no 51.3014927911265 TraesCS3B01G600300 chr3B_820905723 chr3B 820905723 C T C T 3 synonymous_variant LOW transcript non_Triplet 820902164 820906114 3951 3 0.0759301442672741 RFvsST 218049 829541507 829323459 no 51.3014927911265 TraesCS3B01G600400 chr3B_821076948 chr3B 821076948 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600400 chr3B_821076717 chr3B 821076717 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600400 chr3B_821076972 chr3B 821076972 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600400 chr3B_821076969 chr3B 821076969 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600400 chr3B_821076749 chr3B 821076749 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600400 chr3B_821076957 chr3B 821076957 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 821081510 821083379 1870 6 0.320855614973262 RFvsST 218049 829541507 829323459 no No_match TraesCS3B01G600900 chr3B_821695679 chr3B 821695679 A A G G 4 missense_variant MODERATE transcript unique_Triplet 821693457 821696333 2877 1 0.0347584289190129 RFvsST 218049 829541507 829323459 no 35.7412649445608 TraesCS3B01G601600 chr3B_822039233 chr3B 822039233 C T C T 3 synonymous_variant LOW transcript non_Triplet 822039201 822039541 341 1 0.293255131964809 RFvsST 218049 829541507 829323459 no 28.8585585031773 TraesCS3B01G601700 chr3B_822067320 chr3B 822067320 C C T T 4 synonymous_variant LOW transcript non_Triplet 822067205 822067835 631 1 0.158478605388273 RFvsST 218049 829541507 829323459 no 953.140584661112 TraesCS3B01G601800 chr3B_822094867 chr3B 822094867 T A T A 3 intron_variant MODIFIER transcript non_Triplet 822094677 822095011 335 2 0.597014925373134 RFvsST 218049 829541507 829323459 no 3449.28811584369 TraesCS3B01G601800 chr3B_822095276 chr3B 822095276 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 822094677 822095011 335 2 0.597014925373134 RFvsST 218049 829541507 829323459 no 3449.28811584369 TraesCS3B01G602200 chr3B_822189314 chr3B 822189314 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 822189827 822201151 11325 3 0.0264900662251656 RFvsST 218049 829541507 829323459 no 136.813663687572 TraesCS3B01G602200 chr3B_822191463 chr3B 822191463 T C T C 3 synonymous_variant LOW transcript unique_Triplet 822189827 822201151 11325 3 0.0264900662251656 RFvsST 218049 829541507 829323459 no 136.813663687572 TraesCS3B01G602200 chr3B_822191429 chr3B 822191429 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822189827 822201151 11325 3 0.0264900662251656 RFvsST 218049 829541507 829323459 no 136.813663687572 TraesCS3B01G602700 chr3B_822678026 chr3B 822678026 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822678886 chr3B 822678886 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680932 chr3B 822680932 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822678009 chr3B 822678009 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822678184 chr3B 822678184 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682850 chr3B 822682850 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682165 chr3B 822682165 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822679107 chr3B 822679107 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682907 chr3B 822682907 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682935 chr3B 822682935 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677530 chr3B 822677530 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680623 chr3B 822680623 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822681639 chr3B 822681639 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822681663 chr3B 822681663 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682898 chr3B 822682898 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680728 chr3B 822680728 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680641 chr3B 822680641 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680494 chr3B 822680494 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677806 chr3B 822677806 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680872 chr3B 822680872 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682694 chr3B 822682694 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682787 chr3B 822682787 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680653 chr3B 822680653 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822679095 chr3B 822679095 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677173 chr3B 822677173 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682075 chr3B 822682075 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822683143 chr3B 822683143 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822681092 chr3B 822681092 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677779 chr3B 822677779 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822676868 chr3B 822676868 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822680965 chr3B 822680965 A G A G 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677319 chr3B 822677319 A C A C 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822681495 chr3B 822681495 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822678889 chr3B 822678889 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822677080 chr3B 822677080 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682748 chr3B 822682748 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822676805 chr3B 822676805 C G C G 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682204 chr3B 822682204 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822682132 chr3B 822682132 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822681125 chr3B 822681125 A C A C 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G602700 chr3B_822675746 chr3B 822675746 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 822676261 822683239 6979 41 0.587476715861871 RFvsST 218049 829541507 829323459 no 362.261958199968 TraesCS3B01G603300 chr3B_822881706 chr3B 822881706 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 822879781 822881016 1236 3 0.242718446601942 RFvsST 218049 829541507 829323459 no 6.78315700030921 TraesCS3B01G603300 chr3B_822881688 chr3B 822881688 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 822879781 822881016 1236 3 0.242718446601942 RFvsST 218049 829541507 829323459 no 6.78315700030921 TraesCS3B01G603300 chr3B_822881693 chr3B 822881693 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 822879781 822881016 1236 3 0.242718446601942 RFvsST 218049 829541507 829323459 no 6.78315700030921 TraesCS3B01G603400 chr3B_822888213 chr3B 822888213 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822887351 chr3B 822887351 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822889224 chr3B 822889224 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822888656 chr3B 822888656 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822888421 chr3B 822888421 C G C G 3 synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822888653 chr3B 822888653 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822889280 chr3B 822889280 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822888222 chr3B 822888222 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822883095 chr3B 822883095 T G T G 3 missense_variant MODERATE transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603400 chr3B_822888394 chr3B 822888394 T C T C 3 synonymous_variant LOW transcript unique_Triplet 822882640 822889219 6580 10 0.151975683890578 RFvsST 218049 829541507 829323459 no 437.726886007335 TraesCS3B01G603500 chr3B_822907090 chr3B 822907090 C T C T 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822906690 chr3B 822906690 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822906927 chr3B 822906927 C T C T 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822906833 chr3B 822906833 A G A G 3 synonymous_variant LOW transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822906624 chr3B 822906624 G A G A 3 synonymous_variant LOW transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903924 chr3B 822903924 A C A C 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903362 chr3B 822903362 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903860 chr3B 822903860 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822905287 chr3B 822905287 A C A C 3 synonymous_variant LOW transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903376 chr3B 822903376 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903686 chr3B 822903686 G C G C 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822905393 chr3B 822905393 C G C G 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903855 chr3B 822903855 C T C T 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903522 chr3B 822903522 G A G A 3 missense_variant MODERATE transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903423 chr3B 822903423 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603500 chr3B_822903420 chr3B 822903420 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822903506 822907574 4069 16 0.393217006635537 RFvsST 218049 829541507 829323459 no 407.015697341482 TraesCS3B01G603600 chr3B_822969020 chr3B 822969020 A C A C 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822969635 chr3B 822969635 T G T G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822969102 chr3B 822969102 A C A C 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822971761 chr3B 822971761 A C A C 3 synonymous_variant LOW transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822969270 chr3B 822969270 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822970715 chr3B 822970715 T G T G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822970271 chr3B 822970271 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822972117 chr3B 822972117 C A C A 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822971924 chr3B 822971924 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822970629 chr3B 822970629 G G A A 4 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603600 chr3B_822972536 chr3B 822972536 A G A G 3 missense_variant MODERATE transcript unique_Triplet 822968033 822972687 4655 11 0.236305048335124 RFvsST 218049 829541507 829323459 no 505.495076226064 TraesCS3B01G603700 chr3B_822973240 chr3B 822973240 T C T C 3 synonymous_variant LOW transcript non_Triplet 822972695 822973276 582 1 0.171821305841924 RFvsST 218049 829541507 829323459 no 80.3788887046257 TraesCS3B01G603900 chr3B_822984202 chr3B 822984202 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822984216 822984913 698 3 0.429799426934097 RFvsST 218049 829541507 829323459 no 18.0091862179059 TraesCS3B01G603900 chr3B_822984283 chr3B 822984283 C G C G 3 missense_variant MODERATE transcript unique_Triplet 822984216 822984913 698 3 0.429799426934097 RFvsST 218049 829541507 829323459 no 18.0091862179059 TraesCS3B01G603900 chr3B_822984143 chr3B 822984143 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 822984216 822984913 698 3 0.429799426934097 RFvsST 218049 829541507 829323459 no 18.0091862179059 TraesCS3B01G608200 chr3B_826651413 chr3B 826651413 T T A A 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 826645944 826651532 5589 2 0.0357845768473788 RFvsST 218049 829541507 829323459 no 46.2948753767948 TraesCS3B01G608200 chr3B_826649908 chr3B 826649908 C C T T 4 missense_variant MODERATE transcript unique_Triplet 826645944 826651532 5589 2 0.0357845768473788 RFvsST 218049 829541507 829323459 no 46.2948753767948 TraesCS3B01G608500 chr3B_826725222 chr3B 826725222 G G C C 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 826725085 826725945 861 1 0.116144018583043 RFvsST 218049 829541507 829323459 no 6667.52317511555 TraesCS3B01G610500 chr3B_829016286 chr3B 829016286 T T C C 4 missense_variant MODERATE transcript unique_Triplet 829016168 829017680 1513 1 0.0660938532716457 RFvsST 218049 829541507 829323459 no 136.385861505118 TraesCS3B01G611100 chr3B_829200180 chr3B 829200180 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 829203567 829209474 5908 1 0.016926201760325 RFvsST 218049 829541507 829323459 no 241.60756635821 TraesCS3B01G611700 chr3B_829288379 chr3B 829288379 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 829283466 829286621 3156 1 0.0316856780735108 RFvsST 218049 829541507 829323459 no 116.204520027344 TraesCS3B01G611800 chr3B_829289211 chr3B 829289211 C A C A 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 829288040 829289213 1174 2 0.170357751277683 RFvsST 218049 829541507 829323459 no 1105.14055198317 TraesCS3B01G611800 chr3B_829289524 chr3B 829289524 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 829288040 829289213 1174 2 0.170357751277683 RFvsST 218049 829541507 829323459 no 1105.14055198317 TraesCS3D01G001400 chr3D_708351 chr3D 708351 A A G G 4 missense_variant MODERATE transcript unique_Triplet 707880 709355 1476 4 0.2710027100271 RFvsST 325619 368958165 368632547 no 105.10800282598 TraesCS3D01G001400 chr3D_709079 chr3D 709079 G C G C 3 synonymous_variant LOW transcript unique_Triplet 707880 709355 1476 4 0.2710027100271 RFvsST 325619 368958165 368632547 no 105.10800282598 TraesCS3D01G001400 chr3D_709088 chr3D 709088 C G C G 3 synonymous_variant LOW transcript unique_Triplet 707880 709355 1476 4 0.2710027100271 RFvsST 325619 368958165 368632547 no 105.10800282598 TraesCS3D01G001400 chr3D_709177 chr3D 709177 G A G A 3 missense_variant MODERATE transcript unique_Triplet 707880 709355 1476 4 0.2710027100271 RFvsST 325619 368958165 368632547 no 105.10800282598 TraesCS3D01G001600 chr3D_774325 chr3D 774325 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 774083 776332 2250 2 0.0888888888888889 RFvsST 325619 368958165 368632547 no 73.3443087239209 TraesCS3D01G001600 chr3D_774425 chr3D 774425 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 774083 776332 2250 2 0.0888888888888889 RFvsST 325619 368958165 368632547 no 73.3443087239209 TraesCS3D01G001900 chr3D_866406 chr3D 866406 C A C A 3 synonymous_variant LOW transcript unique_Triplet 866382 870469 4088 3 0.073385518590998 RFvsST 325619 368958165 368632547 no 77.0719613041745 TraesCS3D01G001900 chr3D_866341 chr3D 866341 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 866382 870469 4088 3 0.073385518590998 RFvsST 325619 368958165 368632547 no 77.0719613041745 TraesCS3D01G001900 chr3D_866344 chr3D 866344 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 866382 870469 4088 3 0.073385518590998 RFvsST 325619 368958165 368632547 no 77.0719613041745 TraesCS3D01G003100 chr3D_1315717 chr3D 1315717 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 1314988 1316327 1340 1 0.0746268656716418 RFvsST 325619 368958165 368632547 no 168.451274776252 TraesCS3D01G003500 chr3D_1602855 chr3D 1602855 A C A C 3 synonymous_variant LOW transcript non_Triplet 1602462 1603022 561 3 0.53475935828877 RFvsST 325619 368958165 368632547 no 236.213206138003 TraesCS3D01G003500 chr3D_1602936 chr3D 1602936 G A G A 3 synonymous_variant LOW transcript non_Triplet 1602462 1603022 561 3 0.53475935828877 RFvsST 325619 368958165 368632547 no 236.213206138003 TraesCS3D01G003500 chr3D_1602795 chr3D 1602795 C G C G 3 synonymous_variant LOW transcript non_Triplet 1602462 1603022 561 3 0.53475935828877 RFvsST 325619 368958165 368632547 no 236.213206138003 TraesCS3D01G003800 chr3D_1640345 chr3D 1640345 G G A A 4 synonymous_variant LOW transcript non_Triplet 1638975 1640587 1613 1 0.0619962802231866 RFvsST 325619 368958165 368632547 no 50.9540929975428 TraesCS3D01G004400 chr3D_1766164 chr3D 1766164 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 1761791 1762516 726 2 0.275482093663912 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G004400 chr3D_1766178 chr3D 1766178 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 1761791 1762516 726 2 0.275482093663912 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G004500 chr3D_1766220 chr3D 1766220 A G A G 3 synonymous_variant LOW transcript non_Triplet 1766184 1771755 5572 2 0.0358937544867193 RFvsST 325619 368958165 368632547 no 213.782007034803 TraesCS3D01G004500 chr3D_1769344 chr3D 1769344 G A G A 3 synonymous_variant LOW transcript non_Triplet 1766184 1771755 5572 2 0.0358937544867193 RFvsST 325619 368958165 368632547 no 213.782007034803 TraesCS3D01G005400 chr3D_2146979 chr3D 2146979 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2141059 2143491 2433 1 0.041101520756268 RFvsST 325619 368958165 368632547 no 9.960148040254 TraesCS3D01G005500 chr3D_2147620 chr3D 2147620 A C A C 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2150352 chr3D 2150352 T C T C 3 missense_variant MODERATE transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2149243 chr3D 2149243 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2147281 chr3D 2147281 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2147617 chr3D 2147617 G A G A 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2149896 chr3D 2149896 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2147877 chr3D 2147877 G A G A 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G005500 chr3D_2150311 chr3D 2150311 G C G C 3 synonymous_variant LOW transcript unique_Triplet 2147110 2150436 3327 8 0.240456868049294 RFvsST 325619 368958165 368632547 no 44.4405897249114 TraesCS3D01G007400 chr3D_2595429 chr3D 2595429 A G A G 3 synonymous_variant LOW transcript non_Triplet 2590008 2597059 7052 4 0.0567214974475326 RFvsST 325619 368958165 368632547 no 17.6484876911548 TraesCS3D01G007400 chr3D_2592738 chr3D 2592738 G A G A 3 synonymous_variant LOW transcript non_Triplet 2590008 2597059 7052 4 0.0567214974475326 RFvsST 325619 368958165 368632547 no 17.6484876911548 TraesCS3D01G007400 chr3D_2596296 chr3D 2596296 G A G A 3 synonymous_variant LOW transcript non_Triplet 2590008 2597059 7052 4 0.0567214974475326 RFvsST 325619 368958165 368632547 no 17.6484876911548 TraesCS3D01G007400 chr3D_2592759 chr3D 2592759 G A G A 3 synonymous_variant LOW transcript non_Triplet 2590008 2597059 7052 4 0.0567214974475326 RFvsST 325619 368958165 368632547 no 17.6484876911548 TraesCS3D01G007600 chr3D_2627290 chr3D 2627290 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626786 chr3D 2626786 G A G A 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2623840 chr3D 2623840 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2627774 chr3D 2627774 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2620672 chr3D 2620672 G C G C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626882 chr3D 2626882 C C A A 4 missense_variant MODERATE transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626471 chr3D 2626471 G A G A 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2627818 chr3D 2627818 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2620648 chr3D 2620648 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626042 chr3D 2626042 A C A C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2627495 chr3D 2627495 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626268 chr3D 2626268 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626531 chr3D 2626531 G C G C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2627580 chr3D 2627580 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2623846 chr3D 2623846 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2626546 chr3D 2626546 C G C G 3 synonymous_variant LOW transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G007600 chr3D_2627503 chr3D 2627503 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2619817 2627172 7356 17 0.23110386079391 RFvsST 325619 368958165 368632547 no 380.121645257062 TraesCS3D01G008300 chr3D_2909590 chr3D 2909590 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 2909625 2909825 201 3 1.49253731343284 RFvsST 325619 368958165 368632547 no 84.7924352163179 TraesCS3D01G008300 chr3D_2909631 chr3D 2909631 T C T C 3 synonymous_variant LOW transcript non_Triplet 2909625 2909825 201 3 1.49253731343284 RFvsST 325619 368958165 368632547 no 84.7924352163179 TraesCS3D01G008300 chr3D_2909703 chr3D 2909703 A T A T 3 synonymous_variant LOW transcript non_Triplet 2909625 2909825 201 3 1.49253731343284 RFvsST 325619 368958165 368632547 no 84.7924352163179 TraesCS3D01G008500 chr3D_2976684 chr3D 2976684 C T C T 3 synonymous_variant LOW transcript non_Triplet 2975749 2980165 4417 3 0.0679194023092597 RFvsST 325619 368958165 368632547 no 3.9513264606484 TraesCS3D01G008500 chr3D_2977785 chr3D 2977785 A G A G 3 synonymous_variant LOW transcript non_Triplet 2975749 2980165 4417 3 0.0679194023092597 RFvsST 325619 368958165 368632547 no 3.9513264606484 TraesCS3D01G008500 chr3D_2977381 chr3D 2977381 C G C G 3 synonymous_variant LOW transcript non_Triplet 2975749 2980165 4417 3 0.0679194023092597 RFvsST 325619 368958165 368632547 no 3.9513264606484 TraesCS3D01G008600 chr3D_2981174 chr3D 2981174 T G T G 3 synonymous_variant LOW transcript unique_Triplet 2981162 2984447 3286 1 0.0304321363359708 RFvsST 325619 368958165 368632547 no 718.477266787613 TraesCS3D01G009600 chr3D_3233502 chr3D 3233502 G A G A 3 synonymous_variant LOW transcript non_Triplet 3232706 3240088 7383 1 0.0135446295543817 RFvsST 325619 368958165 368632547 no 39.2255456355032 TraesCS3D01G009800 chr3D_3297993 chr3D 3297993 A G A G 3 synonymous_variant LOW transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G009800 chr3D_3298903 chr3D 3298903 C G C G 3 synonymous_variant LOW transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G009800 chr3D_3298840 chr3D 3298840 A T A T,G 3 synonymous_variant LOW transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G009800 chr3D_3298041 chr3D 3298041 T C T C 3 synonymous_variant LOW transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G009800 chr3D_3298909 chr3D 3298909 C T C T 3 synonymous_variant LOW transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G009800 chr3D_3301572 chr3D 3301572 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 3297191 3301464 4274 6 0.140383715489003 RFvsST 325619 368958165 368632547 no 1855.94754871508 TraesCS3D01G010700 chr3D_3990777 chr3D 3990777 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3987280 chr3D 3987280 G A G A 3 synonymous_variant LOW transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3990832 chr3D 3990832 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3990857 chr3D 3990857 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3989807 chr3D 3989807 G A G A 3 synonymous_variant LOW transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3990683 chr3D 3990683 T C T C 3 missense_variant MODERATE transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G010700 chr3D_3989762 chr3D 3989762 A C A C 3 synonymous_variant LOW transcript unique_Triplet 3987124 3990755 3632 7 0.19273127753304 RFvsST 325619 368958165 368632547 no 627.343552782991 TraesCS3D01G011900 chr3D_4172207 chr3D 4172207 T C T C 3 synonymous_variant LOW transcript non_Triplet 4169634 4172543 2910 1 0.0343642611683849 RFvsST 325619 368958165 368632547 no 139.045904124735 TraesCS3D01G012000 chr3D_4180799 chr3D 4180799 A A T T 4 missense_variant MODERATE transcript unique_Triplet 4180138 4182940 2803 1 0.0356760613628255 RFvsST 325619 368958165 368632547 no 36.2682813435893 TraesCS3D01G012600 chr3D_4394797 chr3D 4394797 G G A A 4 synonymous_variant LOW transcript non_Triplet 4394406 4398498 4093 3 0.073295870999267 RFvsST 325619 368958165 368632547 no 144.858932547484 TraesCS3D01G012600 chr3D_4397807 chr3D 4397807 G G T T 4 synonymous_variant LOW transcript non_Triplet 4394406 4398498 4093 3 0.073295870999267 RFvsST 325619 368958165 368632547 no 144.858932547484 TraesCS3D01G012600 chr3D_4397822 chr3D 4397822 A A T T 4 synonymous_variant LOW transcript non_Triplet 4394406 4398498 4093 3 0.073295870999267 RFvsST 325619 368958165 368632547 no 144.858932547484 TraesCS3D01G013700 chr3D_4960156 chr3D 4960156 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 4956998 4957663 666 2 0.3003003003003 RFvsST 325619 368958165 368632547 no 52.9713459403143 TraesCS3D01G013700 chr3D_4960136 chr3D 4960136 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 4956998 4957663 666 2 0.3003003003003 RFvsST 325619 368958165 368632547 no 52.9713459403143 TraesCS3D01G013900 chr3D_4966761 chr3D 4966761 T C T C 3 synonymous_variant LOW transcript non_Triplet 4966269 4969326 3058 1 0.0327011118378025 RFvsST 325619 368958165 368632547 no 230.874078334297 TraesCS3D01G014100 chr3D_4984605 chr3D 4984605 A G A G 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985681 chr3D 4985681 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985242 chr3D 4985242 T C T C 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4986026 chr3D 4986026 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985473 chr3D 4985473 G T G T 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985987 chr3D 4985987 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984674 chr3D 4984674 T C T C 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985946 chr3D 4985946 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984149 chr3D 4984149 A G A G 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984560 chr3D 4984560 G A G A 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984159 chr3D 4984159 C T C T 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985483 chr3D 4985483 G A G A 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985036 chr3D 4985036 T C T C 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984948 chr3D 4984948 A C A C 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985954 chr3D 4985954 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985667 chr3D 4985667 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984794 chr3D 4984794 C T C T 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984834 chr3D 4984834 A G A G 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984848 chr3D 4984848 C G C G 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985760 chr3D 4985760 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984606 chr3D 4984606 C T C T 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984934 chr3D 4984934 A G A G 3 synonymous_variant LOW transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4984784 chr3D 4984784 A T A T 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985024 chr3D 4985024 T C T C 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014100 chr3D_4985241 chr3D 4985241 A T A T 3 missense_variant MODERATE transcript non_Triplet 4983872 4985642 1771 25 1.41163184641446 RFvsST 325619 368958165 368632547 no 350.575139613475 TraesCS3D01G014200 chr3D_4987212 chr3D 4987212 A G A G 3 missense_variant MODERATE transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4989421 chr3D 4989421 A C A C 3 missense_variant MODERATE transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986821 chr3D 4986821 G A G A 3 missense_variant MODERATE transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986924 chr3D 4986924 C T C T 3 missense_variant MODERATE transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4987261 chr3D 4987261 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986934 chr3D 4986934 T G T G 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986790 chr3D 4986790 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986859 chr3D 4986859 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986703 chr3D 4986703 T G T G 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4987242 chr3D 4987242 C G C G 3 missense_variant MODERATE transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4986595 chr3D 4986595 C G C G 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4987294 chr3D 4987294 A T A T 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014200 chr3D_4989417 chr3D 4989417 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4986566 4990029 3464 13 0.375288683602771 RFvsST 325619 368958165 368632547 no 153.928422809301 TraesCS3D01G014500 chr3D_5006258 chr3D 5006258 A T A T 3 missense_variant MODERATE transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006361 chr3D 5006361 C A C A 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006325 chr3D 5006325 A G A G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006262 chr3D 5006262 C T C T 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5007699 chr3D 5007699 C G C G 3 missense_variant MODERATE transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006402 chr3D 5006402 T G T G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006850 chr3D 5006850 G A G A 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006154 chr3D 5006154 C T C T 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006523 chr3D 5006523 C A C A 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006831 chr3D 5006831 A T A T 3 missense_variant MODERATE transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006664 chr3D 5006664 A G A G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006430 chr3D 5006430 A G A G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006724 chr3D 5006724 A G A G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006334 chr3D 5006334 C A C A 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006490 chr3D 5006490 A G A G 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G014500 chr3D_5006670 chr3D 5006670 T C T C 3 synonymous_variant LOW transcript non_Triplet 5005923 5008174 2252 16 0.710479573712256 RFvsST 325619 368958165 368632547 no 489.121072352432 TraesCS3D01G032900 chr3D_12242840 chr3D 12242840 G G C C 4 synonymous_variant LOW transcript non_Triplet 12238258 12243337 5080 5 0.0984251968503937 RFvsST 325619 368958165 368632547 no 133.980816127389 TraesCS3D01G032900 chr3D_12242850 chr3D 12242850 G A G A 3 missense_variant MODERATE transcript non_Triplet 12238258 12243337 5080 5 0.0984251968503937 RFvsST 325619 368958165 368632547 no 133.980816127389 TraesCS3D01G032900 chr3D_12242977 chr3D 12242977 G A G A 3 synonymous_variant LOW transcript non_Triplet 12238258 12243337 5080 5 0.0984251968503937 RFvsST 325619 368958165 368632547 no 133.980816127389 TraesCS3D01G032900 chr3D_12242848 chr3D 12242848 T C T C 3 missense_variant MODERATE transcript non_Triplet 12238258 12243337 5080 5 0.0984251968503937 RFvsST 325619 368958165 368632547 no 133.980816127389 TraesCS3D01G032900 chr3D_12242951 chr3D 12242951 G C G C 3 missense_variant MODERATE transcript non_Triplet 12238258 12243337 5080 5 0.0984251968503937 RFvsST 325619 368958165 368632547 no 133.980816127389 TraesCS3D01G063900 chr3D_28211117 chr3D 28211117 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 28215889 28218117 2229 1 0.0448631673396142 RFvsST 325619 368958165 368632547 no 119.608850018888 TraesCS3D01G064100 chr3D_28328694 chr3D 28328694 A G A G 3 missense_variant MODERATE transcript non_Triplet 28326412 28329337 2926 2 0.0683526999316473 RFvsST 325619 368958165 368632547 no 29.3168454887887 TraesCS3D01G064100 chr3D_28328630 chr3D 28328630 A G A G 3 synonymous_variant LOW transcript non_Triplet 28326412 28329337 2926 2 0.0683526999316473 RFvsST 325619 368958165 368632547 no 29.3168454887887 TraesCS3D01G065200 chr3D_28593893 chr3D 28593893 T C T C 3 synonymous_variant LOW transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28594604 chr3D 28594604 C T C T 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28593866 chr3D 28593866 C G C G 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28594932 chr3D 28594932 T A T A 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28595027 chr3D 28595027 T C T C 3 synonymous_variant LOW transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28594320 chr3D 28594320 T C T C 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28594221 chr3D 28594221 A G A G 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065200 chr3D_28594003 chr3D 28594003 C T C T 3 missense_variant MODERATE transcript non_Triplet 28593854 28595140 1287 8 0.621600621600622 RFvsST 325619 368958165 368632547 no 78.6007281417816 TraesCS3D01G065800 chr3D_29165998 chr3D 29165998 G A G A 3 synonymous_variant LOW transcript unique_Triplet 29165644 29172091 6448 1 0.0155086848635236 RFvsST 325619 368958165 368632547 no 56.8686101554852 TraesCS3D01G066900 chr3D_29695493 chr3D 29695493 T C T C 3 synonymous_variant LOW transcript unique_Triplet 29689639 29702612 12974 2 0.0154154462771697 RFvsST 325619 368958165 368632547 no 87.262821255403 TraesCS3D01G066900 chr3D_29692606 chr3D 29692606 T C T C 3 synonymous_variant LOW transcript unique_Triplet 29689639 29702612 12974 2 0.0154154462771697 RFvsST 325619 368958165 368632547 no 87.262821255403 TraesCS3D01G067500 chr3D_29880526 chr3D 29880526 G C G C 3 synonymous_variant LOW transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067500 chr3D_29881615 chr3D 29881615 G C G C 3 synonymous_variant LOW transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067500 chr3D_29883228 chr3D 29883228 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067500 chr3D_29880188 chr3D 29880188 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067500 chr3D_29880187 chr3D 29880187 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067500 chr3D_29881598 chr3D 29881598 G A G A 3 missense_variant MODERATE transcript unique_Triplet 29880292 29882019 1728 6 0.347222222222222 RFvsST 325619 368958165 368632547 no 102.921367580969 TraesCS3D01G067600 chr3D_29885437 chr3D 29885437 T G T G 3 missense_variant MODERATE transcript unique_Triplet 29883244 29888379 5136 1 0.0194704049844237 RFvsST 325619 368958165 368632547 no 4.96125921193676 TraesCS3D01G070200 chr3D_31435690 chr3D 31435690 C G C G 3 missense_variant MODERATE transcript non_Triplet 31432328 31436993 4666 3 0.0642948992713245 RFvsST 325619 368958165 368632547 no 61.7828165830097 TraesCS3D01G070200 chr3D_31436136 chr3D 31436136 A G A G 3 synonymous_variant LOW transcript non_Triplet 31432328 31436993 4666 3 0.0642948992713245 RFvsST 325619 368958165 368632547 no 61.7828165830097 TraesCS3D01G070200 chr3D_31436272 chr3D 31436272 G A G A 3 missense_variant MODERATE transcript non_Triplet 31432328 31436993 4666 3 0.0642948992713245 RFvsST 325619 368958165 368632547 no 61.7828165830097 TraesCS3D01G070600 chr3D_31694499 chr3D 31694499 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31694400 chr3D 31694400 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31694164 chr3D 31694164 G A G A 3 synonymous_variant LOW transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31694290 chr3D 31694290 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31693500 chr3D 31693500 A G A G 3 missense_variant MODERATE transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31694564 chr3D 31694564 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G070600 chr3D_31694468 chr3D 31694468 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 31690463 31694206 3744 7 0.186965811965812 RFvsST 325619 368958165 368632547 no 83.9467417721444 TraesCS3D01G072000 chr3D_32272446 chr3D 32272446 T C T C 3 missense_variant MODERATE transcript unique_Triplet 32265782 32272475 6694 2 0.0298775022408127 RFvsST 325619 368958165 368632547 no 99.5149122251968 TraesCS3D01G072000 chr3D_32272291 chr3D 32272291 T C T C 3 missense_variant MODERATE transcript unique_Triplet 32265782 32272475 6694 2 0.0298775022408127 RFvsST 325619 368958165 368632547 no 99.5149122251968 TraesCS3D01G072700 chr3D_32592945 chr3D 32592945 A G A G 3 synonymous_variant LOW transcript unique_Triplet 32592814 32595414 2601 1 0.0384467512495194 RFvsST 325619 368958165 368632547 no 337.190503357808 TraesCS3D01G072800 chr3D_32712624 chr3D 32712624 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 32712738 32713335 598 2 0.334448160535117 RFvsST 325619 368958165 368632547 no 41.4475649640642 TraesCS3D01G072800 chr3D_32712661 chr3D 32712661 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 32712738 32713335 598 2 0.334448160535117 RFvsST 325619 368958165 368632547 no 41.4475649640642 TraesCS3D01G072900 chr3D_33155005 chr3D 33155005 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 33151452 33155058 3607 4 0.110895481009149 RFvsST 325619 368958165 368632547 no 106.647519981878 TraesCS3D01G072900 chr3D_33154864 chr3D 33154864 C G C G 3 missense_variant MODERATE transcript unique_Triplet 33151452 33155058 3607 4 0.110895481009149 RFvsST 325619 368958165 368632547 no 106.647519981878 TraesCS3D01G072900 chr3D_33153119 chr3D 33153119 C T C T 3 synonymous_variant LOW transcript unique_Triplet 33151452 33155058 3607 4 0.110895481009149 RFvsST 325619 368958165 368632547 no 106.647519981878 TraesCS3D01G072900 chr3D_33151641 chr3D 33151641 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 33151452 33155058 3607 4 0.110895481009149 RFvsST 325619 368958165 368632547 no 106.647519981878 TraesCS3D01G073100 chr3D_33180132 chr3D 33180132 C T C T 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33181814 chr3D 33181814 G A G A 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33183639 chr3D 33183639 G T G T 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33185040 chr3D 33185040 G A G A 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33179439 chr3D 33179439 T C T C 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33184294 chr3D 33184294 G A G A 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33181995 chr3D 33181995 T C T C 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33179805 chr3D 33179805 A G A G 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33181368 chr3D 33181368 G T G T 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33184898 chr3D 33184898 G A G A 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33187087 chr3D 33187087 G A G A 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33181436 chr3D 33181436 G A G A 3 synonymous_variant LOW transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33189695 chr3D 33189695 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G073100 chr3D_33185886 chr3D 33185886 C T C T 3 missense_variant MODERATE transcript unique_Triplet 33178830 33188783 9954 14 0.140646976090014 RFvsST 325619 368958165 368632547 no 1349.34492763622 TraesCS3D01G074600 chr3D_35816989 chr3D 35816989 A G A G 3 missense_variant MODERATE transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35818161 chr3D 35818161 A C A C 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35815753 chr3D 35815753 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817522 chr3D 35817522 A G A G 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817474 chr3D 35817474 A C A C 3 missense_variant MODERATE transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35816397 chr3D 35816397 C T C T 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35815663 chr3D 35815663 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35816257 chr3D 35816257 G C G C 3 missense_variant MODERATE transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817246 chr3D 35817246 C T C T 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817814 chr3D 35817814 T G T G 3 missense_variant MODERATE transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817885 chr3D 35817885 A A G G 4 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817750 chr3D 35817750 A G A G 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35819450 chr3D 35819450 T C T C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35817369 chr3D 35817369 G A G A 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35816930 chr3D 35816930 T A T A 3 missense_variant MODERATE transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074600 chr3D_35816391 chr3D 35816391 G A G A 3 synonymous_variant LOW transcript non_Triplet 35815792 35819470 3679 16 0.434900788257679 RFvsST 325619 368958165 368632547 no 356.255671562823 TraesCS3D01G074800 chr3D_36014869 chr3D 36014869 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36008283 36012190 3908 1 0.0255885363357216 RFvsST 325619 368958165 368632547 no 5.77881278655699 TraesCS3D01G074900 chr3D_36014144 chr3D 36014144 C T C T 3 missense_variant MODERATE transcript non_Triplet 36012832 36014779 1948 1 0.0513347022587269 RFvsST 325619 368958165 368632547 no 4.03300431481718 TraesCS3D01G075700 chr3D_36582268 chr3D 36582268 G A G A 3 synonymous_variant LOW transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36582194 chr3D 36582194 G A G A 3 missense_variant MODERATE transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36582071 chr3D 36582071 G A G A 3 missense_variant MODERATE transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36581742 chr3D 36581742 C T C T 3 missense_variant MODERATE transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36580628 chr3D 36580628 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36581671 chr3D 36581671 T C T C 3 synonymous_variant LOW transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36581080 chr3D 36581080 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36581878 chr3D 36581878 T G T G 3 synonymous_variant LOW transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36580640 chr3D 36580640 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36582110 chr3D 36582110 G C G C 3 missense_variant MODERATE transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075700 chr3D_36580994 chr3D 36580994 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36581249 36583154 1906 11 0.577124868835257 RFvsST 325619 368958165 368632547 no 184.396165442339 TraesCS3D01G075800 chr3D_36592894 chr3D 36592894 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 36588801 36592353 3553 2 0.056290458767239 RFvsST 325619 368958165 368632547 no 538.058524424519 TraesCS3D01G075800 chr3D_36589037 chr3D 36589037 G T G T 3 synonymous_variant LOW transcript unique_Triplet 36588801 36592353 3553 2 0.056290458767239 RFvsST 325619 368958165 368632547 no 538.058524424519 TraesCS3D01G076200 chr3D_36842512 chr3D 36842512 T C T C 3 synonymous_variant LOW transcript unique_Triplet 36841932 36842632 701 2 0.285306704707561 RFvsST 325619 368958165 368632547 no 32.4654903488033 TraesCS3D01G076200 chr3D_36841757 chr3D 36841757 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 36841932 36842632 701 2 0.285306704707561 RFvsST 325619 368958165 368632547 no 32.4654903488033 TraesCS3D01G076300 chr3D_36978761 chr3D 36978761 G A G A 3 synonymous_variant LOW transcript unique_Triplet 36976544 36979397 2854 3 0.105115627189909 RFvsST 325619 368958165 368632547 no 134.915939355724 TraesCS3D01G076300 chr3D_36978386 chr3D 36978386 G A G A 3 synonymous_variant LOW transcript unique_Triplet 36976544 36979397 2854 3 0.105115627189909 RFvsST 325619 368958165 368632547 no 134.915939355724 TraesCS3D01G076300 chr3D_36979022 chr3D 36979022 A G A G 3 synonymous_variant LOW transcript unique_Triplet 36976544 36979397 2854 3 0.105115627189909 RFvsST 325619 368958165 368632547 no 134.915939355724 TraesCS3D01G076400 chr3D_37063129 chr3D 37063129 T C T C 3 synonymous_variant LOW transcript unique_Triplet 37062294 37066079 3786 3 0.0792393026941363 RFvsST 325619 368958165 368632547 no 250.021322546179 TraesCS3D01G076400 chr3D_37063809 chr3D 37063809 A T A T 3 missense_variant MODERATE transcript unique_Triplet 37062294 37066079 3786 3 0.0792393026941363 RFvsST 325619 368958165 368632547 no 250.021322546179 TraesCS3D01G076400 chr3D_37062378 chr3D 37062378 A G A G 3 synonymous_variant LOW transcript unique_Triplet 37062294 37066079 3786 3 0.0792393026941363 RFvsST 325619 368958165 368632547 no 250.021322546179 TraesCS3D01G076500 chr3D_37073009 chr3D 37073009 G A G A 3 missense_variant MODERATE transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37072631 chr3D 37072631 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37072962 chr3D 37072962 A G A G 3 synonymous_variant LOW transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37081606 chr3D 37081606 T C T C 3 missense_variant MODERATE transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37072348 chr3D 37072348 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37075015 chr3D 37075015 C T C T 3 missense_variant MODERATE transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37081640 chr3D 37081640 A G A G 3 synonymous_variant LOW transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37079241 chr3D 37079241 A C A C 3 synonymous_variant LOW transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G076500 chr3D_37077249 chr3D 37077249 T A T A 3 synonymous_variant LOW transcript non_Triplet 37072929 37081789 8861 9 0.101568671707482 RFvsST 325619 368958165 368632547 no 197.041149209276 TraesCS3D01G077100 chr3D_37754945 chr3D 37754945 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077100 chr3D_37755027 chr3D 37755027 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077100 chr3D_37752123 chr3D 37752123 C T C T 3 synonymous_variant LOW transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077100 chr3D_37754763 chr3D 37754763 C A C A 3 synonymous_variant LOW transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077100 chr3D_37754907 chr3D 37754907 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077100 chr3D_37755592 chr3D 37755592 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 37751412 37754898 3487 6 0.172067679954115 RFvsST 325619 368958165 368632547 no 22.1873652035876 TraesCS3D01G077200 chr3D_37761981 chr3D 37761981 A G A G 3 synonymous_variant LOW transcript unique_Triplet 37755814 37764211 8398 1 0.0119075970469159 RFvsST 325619 368958165 368632547 no 226.788098887013 TraesCS3D01G077500 chr3D_38274779 chr3D 38274779 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 38275035 38278813 3779 2 0.0529240539825351 RFvsST 325619 368958165 368632547 no 380.513858880764 TraesCS3D01G077500 chr3D_38278862 chr3D 38278862 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 38275035 38278813 3779 2 0.0529240539825351 RFvsST 325619 368958165 368632547 no 380.513858880764 TraesCS3D01G079200 chr3D_39389317 chr3D 39389317 A T A T 3 missense_variant MODERATE transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39388189 chr3D 39388189 T C T C 3 synonymous_variant LOW transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39386505 chr3D 39386505 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39388078 chr3D 39388078 T C T C 3 synonymous_variant LOW transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39389157 chr3D 39389157 C T C T 3 synonymous_variant LOW transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39389172 chr3D 39389172 C T C T 3 synonymous_variant LOW transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39389675 chr3D 39389675 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079200 chr3D_39387570 chr3D 39387570 G A G A 3 missense_variant MODERATE transcript unique_Triplet 39386514 39389526 3013 8 0.265516096913375 RFvsST 325619 368958165 368632547 no 265.15514113249 TraesCS3D01G079600 chr3D_39539309 chr3D 39539309 T C T C 3 synonymous_variant LOW transcript unique_Triplet 39529761 39540058 10298 3 0.0291318702660711 RFvsST 325619 368958165 368632547 no 140.457423162277 TraesCS3D01G079600 chr3D_39539466 chr3D 39539466 G A G A 3 synonymous_variant LOW transcript unique_Triplet 39529761 39540058 10298 3 0.0291318702660711 RFvsST 325619 368958165 368632547 no 140.457423162277 TraesCS3D01G079600 chr3D_39539959 chr3D 39539959 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 39529761 39540058 10298 3 0.0291318702660711 RFvsST 325619 368958165 368632547 no 140.457423162277 TraesCS3D01G080200 chr3D_39995760 chr3D 39995760 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 39997472 39998835 1364 2 0.146627565982405 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G080200 chr3D_39995578 chr3D 39995578 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 39997472 39998835 1364 2 0.146627565982405 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G080300 chr3D_40006502 chr3D 40006502 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 40007532 40011355 3824 1 0.0261506276150628 RFvsST 325619 368958165 368632547 no 123.043159258886 TraesCS3D01G082200 chr3D_41675629 chr3D 41675629 G A G A 3 missense_variant MODERATE transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41675265 chr3D 41675265 C T C T 3 synonymous_variant LOW transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41672338 chr3D 41672338 T C T C 3 synonymous_variant LOW transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41675611 chr3D 41675611 T G T G 3 missense_variant MODERATE transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41675484 chr3D 41675484 G A G A 3 synonymous_variant LOW transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41675993 chr3D 41675993 C T C T 3 missense_variant MODERATE transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41673506 chr3D 41673506 T A T A 3 synonymous_variant LOW transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082200 chr3D_41673791 chr3D 41673791 G A G A 3 synonymous_variant LOW transcript unique_Triplet 41671840 41676252 4413 8 0.181282574212554 RFvsST 325619 368958165 368632547 no 179.241401976356 TraesCS3D01G082300 chr3D_41697126 chr3D 41697126 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 41697371 41699261 1891 1 0.0528820729772607 RFvsST 325619 368958165 368632547 no 116.631170618566 TraesCS3D01G082400 chr3D_41710677 chr3D 41710677 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 41710690 41712443 1754 3 0.171037628278221 RFvsST 325619 368958165 368632547 no 197.050890353699 TraesCS3D01G082400 chr3D_41712498 chr3D 41712498 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 41710690 41712443 1754 3 0.171037628278221 RFvsST 325619 368958165 368632547 no 197.050890353699 TraesCS3D01G082400 chr3D_41710640 chr3D 41710640 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 41710690 41712443 1754 3 0.171037628278221 RFvsST 325619 368958165 368632547 no 197.050890353699 TraesCS3D01G093200 chr3D_47192264 chr3D 47192264 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 47188821 47192332 3512 1 0.0284738041002278 RFvsST 325619 368958165 368632547 no 315.559623923428 TraesCS3D01G093300 chr3D_47348581 chr3D 47348581 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 47340288 47349812 9525 1 0.010498687664042 RFvsST 325619 368958165 368632547 no 296.579902043448 TraesCS3D01G093600 chr3D_47653895 chr3D 47653895 G C G C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 47653820 47656383 2564 1 0.0390015600624025 RFvsST 325619 368958165 368632547 no 186.386060384598 TraesCS3D01G106000 chr3D_58111266 chr3D 58111266 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 58114206 58117596 3391 1 0.0294898260100265 RFvsST 325619 368958165 368632547 no 36.9872277952528 TraesCS3D01G108300 chr3D_61680933 chr3D 61680933 C T C T 3 synonymous_variant LOW transcript unique_Triplet 61678721 61681137 2417 1 0.0413736036408771 RFvsST 325619 368958165 368632547 no 249.58633708325 TraesCS3D01G120500 chr3D_75989653 chr3D 75989653 C C T T 4 stop_gained HIGH transcript unique_Triplet 75984648 75989885 5238 1 0.0190912562046583 RFvsST 325619 368958165 368632547 no 539.970182330742 TraesCS3D01G123200 chr3D_80947367 chr3D 80947367 C T C T 3 missense_variant MODERATE transcript unique_Triplet 80942975 80952420 9446 1 0.0105864916366716 RFvsST 325619 368958165 368632547 no 79.6352003429975 TraesCS3D01G128600 chr3D_86353110 chr3D 86353110 C T C T 3 missense_variant MODERATE transcript unique_Triplet 86352792 86357082 4291 1 0.0233045910044279 RFvsST 325619 368958165 368632547 no 306.08556235599 TraesCS3D01G131300 chr3D_91380885 chr3D 91380885 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 91371569 91382168 10600 1 0.00943396226415094 RFvsST 325619 368958165 368632547 no 217.801484874577 TraesCS3D01G139400 chr3D_98886779 chr3D 98886779 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 98882933 98883946 1014 1 0.0986193293885602 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G140700 chr3D_102779767 chr3D 102779767 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 102779243 102781491 2249 1 0.0444642063139173 RFvsST 325619 368958165 368632547 no 846.231671955835 TraesCS3D01G155300 chr3D_122454568 chr3D 122454568 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 122455582 122456222 641 1 0.15600624024961 RFvsST 325619 368958165 368632547 no 3540.81015875953 TraesCS3D01G161400 chr3D_132161971 chr3D 132161971 G G A A 4 synonymous_variant LOW transcript unique_Triplet 132154695 132162922 8228 1 0.0121536217792902 RFvsST 325619 368958165 368632547 no 847.603685009951 TraesCS3D01G165700 chr3D_137635228 chr3D 137635228 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 137630080 137634359 4280 1 0.0233644859813084 RFvsST 325619 368958165 368632547 no 12.0636979872774 TraesCS3D01G167100 chr3D_141413357 chr3D 141413357 C C A A 4 synonymous_variant LOW transcript unique_Triplet 141413096 141422986 9891 1 0.0101102011930037 RFvsST 325619 368958165 368632547 no 95.6119901616341 TraesCS3D01G168500 chr3D_143139089 chr3D 143139089 A A T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 143139018 143142622 3605 1 0.0277392510402219 RFvsST 325619 368958165 368632547 no 205.109176177561 TraesCS3D01G178700 chr3D_160612953 chr3D 160612953 C C T T 4 missense_variant MODERATE transcript unique_Triplet 160612574 160619697 7124 1 0.0140370578326783 RFvsST 325619 368958165 368632547 no 158.868826565866 TraesCS3D01G182500 chr3D_166521424 chr3D 166521424 C C T T 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 166517188 166524045 6858 1 0.0145815106445028 RFvsST 325619 368958165 368632547 no 437.863894357495 TraesCS3D01G184600 chr3D_170537136 chr3D 170537136 C C T T 4 missense_variant MODERATE transcript unique_Triplet 170536973 170538558 1586 1 0.0630517023959647 RFvsST 325619 368958165 368632547 no 32.9878466711151 TraesCS3D01G188600 chr3D_175404753 chr3D 175404753 T T C C 4 missense_variant MODERATE transcript unique_Triplet 175404728 175408284 3557 1 0.0281135788585887 RFvsST 325619 368958165 368632547 no 198.298281274295 TraesCS3D01G196600 chr3D_199133517 chr3D 199133517 C T C T 3 missense_variant MODERATE transcript non_Triplet 199123494 199133577 10084 1 0.00991669972233241 RFvsST 325619 368958165 368632547 no 212.890664335349 TraesCS3D01G201800 chr3D_241669361 chr3D 241669361 C C T T 4 synonymous_variant LOW transcript non_Triplet 241665436 241669453 4018 1 0.0248880039820806 RFvsST 325619 368958165 368632547 no 130.294752204011 TraesCS3D01G202500 chr3D_248535212 chr3D 248535212 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 248533747 248538294 4548 1 0.0219876868953386 RFvsST 325619 368958165 368632547 no 637.875590216475 TraesCS3D01G203200 chr3D_252333007 chr3D 252333007 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 252332044 252332502 459 1 0.217864923747277 RFvsST 325619 368958165 368632547 no 92.9954721507624 TraesCS3D01G205400 chr3D_263354279 chr3D 263354279 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 263323484 263354257 30774 1 0.00324949632806915 RFvsST 325619 368958165 368632547 no 149.771104922701 TraesCS3D01G210000 chr3D_277548349 chr3D 277548349 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 277541475 277548531 7057 1 0.0141703273345614 RFvsST 325619 368958165 368632547 no 52.6933554114462 TraesCS3D01G214900 chr3D_290186939 chr3D 290186939 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 290189114 290189952 839 1 0.119189511323004 RFvsST 325619 368958165 368632547 no No_match TraesCS3D01G217000 chr3D_294350301 chr3D 294350301 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 294346422 294350414 3993 1 0.0250438266967193 RFvsST 325619 368958165 368632547 no 126.402987063276 TraesCS3D01G219500 chr3D_298588411 chr3D 298588411 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 298585590 298600733 15144 1 0.00660327522451136 RFvsST 325619 368958165 368632547 no 247.698789486758 TraesCS3D01G226500 chr3D_308270037 chr3D 308270037 A G A G 3 missense_variant MODERATE transcript unique_Triplet 308265354 308276466 11113 1 0.00899847026005579 RFvsST 325619 368958165 368632547 no 297.788733937368 TraesCS3D01G230300 chr3D_313718625 chr3D 313718625 C C T T 4 synonymous_variant LOW transcript non_Triplet 313716028 313718759 2732 1 0.0366032210834553 RFvsST 325619 368958165 368632547 no 76.9239080771057 TraesCS3D01G230400 chr3D_313793485 chr3D 313793485 T T C C 4 missense_variant MODERATE transcript unique_Triplet 313783133 313793753 10621 1 0.00941530929291027 RFvsST 325619 368958165 368632547 no 520.040281524366 TraesCS3D01G234600 chr3D_323719187 chr3D 323719187 T T C C 4 missense_variant MODERATE transcript unique_Triplet 323719103 323720914 1812 1 0.0551876379690949 RFvsST 325619 368958165 368632547 no 152.678464564376 TraesCS3D01G297300 chr3D_410986983 chr3D 410986983 G A G A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 410982607 410990435 7829 1 0.0127730233746328 RFvsST 365905141 487122688 121217548 no 33.4686614574019 TraesCS3D01G297900 chr3D_411635217 chr3D 411635217 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 411618489 411635204 16716 1 0.00598229241445322 RFvsST 365905141 487122688 121217548 no 448.015133812541 TraesCS3D01G299800 chr3D_414644015 chr3D 414644015 G G A A 4 synonymous_variant LOW transcript non_Triplet 414643803 414649924 6122 1 0.0163345311989546 RFvsST 365905141 487122688 121217548 no 245.589786097848 TraesCS3D01G313800 chr3D_427806487 chr3D 427806487 G G A A 4 missense_variant MODERATE transcript unique_Triplet 427803032 427810218 7187 1 0.0139140114094894 RFvsST 365905141 487122688 121217548 no 102.904543227669 TraesCS3D01G323600 chr3D_436643894 chr3D 436643894 G G A A 4 missense_variant MODERATE transcript non_Triplet 436642414 436645379 2966 1 0.0337154416722859 RFvsST 365905141 487122688 121217548 no 140.390544773992 TraesCS3D01G324100 chr3D_437356303 chr3D 437356303 G A G A 3 missense_variant MODERATE transcript unique_Triplet 437356112 437358577 2466 1 0.040551500405515 RFvsST 365905141 487122688 121217548 no 56.433103015765 TraesCS3D01G330100 chr3D_442807675 chr3D 442807675 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 442803310 442805348 2039 1 0.0490436488474743 RFvsST 365905141 487122688 121217548 no No_match TraesCS3D01G331500 chr3D_443673495 chr3D 443673495 A G A G 3 missense_variant MODERATE transcript non_Triplet 443670415 443676790 6376 1 0.0156838143036386 RFvsST 365905141 487122688 121217548 no 287.420682007583 TraesCS3D01G334700 chr3D_446847926 chr3D 446847926 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 446848191 446852775 4585 1 0.0218102508178844 RFvsST 365905141 487122688 121217548 no 63.5484990622958 TraesCS3D01G335700 chr3D_447578583 chr3D 447578583 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 447578708 447589405 10698 1 0.0093475415965601 RFvsST 365905141 487122688 121217548 no 98.7597372595899 TraesCS3D01G340900 chr3D_454501098 chr3D 454501098 A C A C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 454498040 454499587 1548 1 0.0645994832041344 RFvsST 365905141 487122688 121217548 no 12.9425528839413 TraesCS3D01G411800 chr3D_524304857 chr3D 524304857 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 524305739 524308992 3254 1 0.0307314074984634 RFvsST 486037117 614675133 128638017 no 15.6563942219009 TraesCS3D01G414200 chr3D_526171883 chr3D 526171883 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526171951 526172594 644 1 0.15527950310559 RFvsST 486037117 614675133 128638017 no 46.6899944935016 TraesCS3D01G425100 chr3D_537143509 chr3D 537143509 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537146749 537150589 3841 1 0.0260348867482426 RFvsST 486037117 614675133 128638017 no 43.2772561536819 TraesCS3D01G427500 chr3D_540936568 chr3D 540936568 G A G A 3 synonymous_variant LOW transcript unique_Triplet 540936322 540936953 632 1 0.158227848101266 RFvsST 486037117 614675133 128638017 no 68.0840136814593 TraesCS3D01G428200 chr3D_542382874 chr3D 542382874 C C T T 4 synonymous_variant LOW transcript unique_Triplet 542382400 542385334 2935 1 0.0340715502555366 RFvsST 486037117 614675133 128638017 no 295.476568918492 TraesCS3D01G429200 chr3D_543878451 chr3D 543878451 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 543872419 543878904 6486 1 0.0154178230033919 RFvsST 486037117 614675133 128638017 no 411.904886200812 TraesCS3D01G432300 chr3D_546199033 chr3D 546199033 G A G A 3 missense_variant MODERATE transcript unique_Triplet 546196229 546199331 3103 1 0.0322268772155978 RFvsST 486037117 614675133 128638017 no 90.6969992270225 TraesCS3D01G435200 chr3D_547512243 chr3D 547512243 C C T T 4 missense_variant MODERATE transcript non_Triplet 547511016 547513015 2000 1 0.05 RFvsST 486037117 614675133 128638017 no 40.1819970633318 TraesCS3D01G436500 chr3D_548525423 chr3D 548525423 C C T T 4 missense_variant MODERATE transcript non_Triplet 548524638 548526488 1851 1 0.0540248514316586 RFvsST 486037117 614675133 128638017 no No_match TraesCS3D01G438900 chr3D_549506496 chr3D 549506496 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 549506256 549511429 5174 1 0.0193274062620796 RFvsST 486037117 614675133 128638017 no 271.954295010689 TraesCS3D01G450200 chr3D_558560360 chr3D 558560360 G G T T 4 missense_variant MODERATE transcript unique_Triplet 558558429 558561056 2628 1 0.0380517503805175 RFvsST 486037117 614675133 128638017 no No_match TraesCS3D01G467600 chr3D_570380529 chr3D 570380529 C C T T 4 synonymous_variant LOW transcript non_Triplet 570379588 570380814 1227 1 0.0814995925020375 RFvsST 486037117 614675133 128638017 no 212.026470030514 TraesCS3D01G484600 chr3D_581549260 chr3D 581549260 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 581548398 581548985 588 1 0.170068027210884 RFvsST 486037117 614675133 128638017 no 132.632754650871 TraesCS3D01G496900 chr3D_588319514 chr3D 588319514 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 588317809 588319707 1899 1 0.0526592943654555 RFvsST 486037117 614675133 128638017 no 153.913342023059 TraesCS3D01G516200 chr3D_600123977 chr3D 600123977 T T C C 4 synonymous_variant LOW transcript unique_Triplet 600123851 600126844 2994 2 0.0668002672010688 RFvsST 486037117 614675133 128638017 no 19.1317262687961 TraesCS3D01G516200 chr3D_600124250 chr3D 600124250 A A G G 4 synonymous_variant LOW transcript unique_Triplet 600123851 600126844 2994 2 0.0668002672010688 RFvsST 486037117 614675133 128638017 no 19.1317262687961 TraesCS3D01G516800 chr3D_600418826 chr3D 600418826 C C A A 4 missense_variant MODERATE transcript unique_Triplet 600418757 600420568 1812 1 0.0551876379690949 RFvsST 486037117 614675133 128638017 no 31.8164321373648 TraesCS3D01G517100 chr3D_600563874 chr3D 600563874 G G C C 4 intron_variant MODIFIER transcript non_Triplet 600563453 600564143 691 1 0.144717800289436 RFvsST 486037117 614675133 128638017 no 5666.55436215189 TraesCS3D01G517400 chr3D_600607837 chr3D 600607837 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 600607844 600608597 754 4 0.530503978779841 RFvsST 486037117 614675133 128638017 no 68.7520913742633 TraesCS3D01G517400 chr3D_600608623 chr3D 600608623 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 600607844 600608597 754 4 0.530503978779841 RFvsST 486037117 614675133 128638017 no 68.7520913742633 TraesCS3D01G517400 chr3D_600607865 chr3D 600607865 G G A A 4 missense_variant MODERATE transcript non_Triplet 600607844 600608597 754 4 0.530503978779841 RFvsST 486037117 614675133 128638017 no 68.7520913742633 TraesCS3D01G517400 chr3D_600608008 chr3D 600608008 T T C C 4 synonymous_variant LOW transcript non_Triplet 600607844 600608597 754 4 0.530503978779841 RFvsST 486037117 614675133 128638017 no 68.7520913742633 TraesCS3D01G519000 chr3D_601922134 chr3D 601922134 G G A A 4 synonymous_variant LOW transcript non_Triplet 601918414 601924953 6540 4 0.0611620795107034 RFvsST 486037117 614675133 128638017 no 201.226227672069 TraesCS3D01G519000 chr3D_601918253 chr3D 601918253 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 601918414 601924953 6540 4 0.0611620795107034 RFvsST 486037117 614675133 128638017 no 201.226227672069 TraesCS3D01G519000 chr3D_601918251 chr3D 601918251 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 601918414 601924953 6540 4 0.0611620795107034 RFvsST 486037117 614675133 128638017 no 201.226227672069 TraesCS3D01G519000 chr3D_601918423 chr3D 601918423 G G A A 4 synonymous_variant LOW transcript non_Triplet 601918414 601924953 6540 4 0.0611620795107034 RFvsST 486037117 614675133 128638017 no 201.226227672069 TraesCS3D01G522500 chr3D_603598951 chr3D 603598951 C C T T 4 synonymous_variant LOW transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603598741 chr3D 603598741 C C G G 4 synonymous_variant LOW transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603598645 chr3D 603598645 G G C C 4 synonymous_variant LOW transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603598483 chr3D 603598483 G G A A 4 synonymous_variant LOW transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603600807 chr3D 603600807 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603598453 chr3D 603598453 G G A A 4 synonymous_variant LOW transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522500 chr3D_603598938 chr3D 603598938 G G C C 4 missense_variant MODERATE transcript unique_Triplet 603598160 603599506 1347 7 0.519673348181143 RFvsST 486037117 614675133 128638017 no 111.446266160709 TraesCS3D01G522600 chr3D_603603980 chr3D 603603980 A A G G 4 synonymous_variant LOW transcript unique_Triplet 603600923 603604343 3421 2 0.0584624378836597 RFvsST 486037117 614675133 128638017 no 174.71445117012 TraesCS3D01G522600 chr3D_603601356 chr3D 603601356 G G A A 4 synonymous_variant LOW transcript unique_Triplet 603600923 603604343 3421 2 0.0584624378836597 RFvsST 486037117 614675133 128638017 no 174.71445117012 TraesCS3D01G530300 chr3D_607067101 chr3D 607067101 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 607063841 607065690 1850 5 0.27027027027027 RFvsST 486037117 614675133 128638017 no 67.6648725746076 TraesCS3D01G530300 chr3D_607069009 chr3D 607069009 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 607063841 607065690 1850 5 0.27027027027027 RFvsST 486037117 614675133 128638017 no 67.6648725746076 TraesCS3D01G530300 chr3D_607067075 chr3D 607067075 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 607063841 607065690 1850 5 0.27027027027027 RFvsST 486037117 614675133 128638017 no 67.6648725746076 TraesCS3D01G530300 chr3D_607065661 chr3D 607065661 C C A A 4 synonymous_variant LOW transcript unique_Triplet 607063841 607065690 1850 5 0.27027027027027 RFvsST 486037117 614675133 128638017 no 67.6648725746076 TraesCS3D01G530300 chr3D_607065517 chr3D 607065517 C C T T 4 synonymous_variant LOW transcript unique_Triplet 607063841 607065690 1850 5 0.27027027027027 RFvsST 486037117 614675133 128638017 no 67.6648725746076 TraesCS3D01G530400 chr3D_607068403 chr3D 607068403 C C G G 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G530400 chr3D_607068358 chr3D 607068358 C C G G 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G530400 chr3D_607068091 chr3D 607068091 A A G G 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G530400 chr3D_607068406 chr3D 607068406 G G C C 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G530400 chr3D_607067419 chr3D 607067419 G G A A 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G530400 chr3D_607068121 chr3D 607068121 G G T T 4 synonymous_variant LOW transcript unique_Triplet 607067263 607068609 1347 6 0.44543429844098 RFvsST 486037117 614675133 128638017 no 558.531376061035 TraesCS3D01G531200 chr3D_607309371 chr3D 607309371 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607309401 607310441 1041 5 0.48030739673391 RFvsST 486037117 614675133 128638017 no 82.638456424752 TraesCS3D01G531200 chr3D_607309526 chr3D 607309526 A A C C 4 missense_variant MODERATE transcript unique_Triplet 607309401 607310441 1041 5 0.48030739673391 RFvsST 486037117 614675133 128638017 no 82.638456424752 TraesCS3D01G531200 chr3D_607309385 chr3D 607309385 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607309401 607310441 1041 5 0.48030739673391 RFvsST 486037117 614675133 128638017 no 82.638456424752 TraesCS3D01G531200 chr3D_607310283 chr3D 607310283 A A G G 4 synonymous_variant LOW transcript unique_Triplet 607309401 607310441 1041 5 0.48030739673391 RFvsST 486037117 614675133 128638017 no 82.638456424752 TraesCS3D01G531200 chr3D_607309264 chr3D 607309264 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607309401 607310441 1041 5 0.48030739673391 RFvsST 486037117 614675133 128638017 no 82.638456424752 TraesCS3D01G531900 chr3D_607924023 chr3D 607924023 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 607922801 607923646 846 5 0.591016548463357 RFvsST 486037117 614675133 128638017 no 918.452455070124 TraesCS3D01G531900 chr3D_607923517 chr3D 607923517 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 607922801 607923646 846 5 0.591016548463357 RFvsST 486037117 614675133 128638017 no 918.452455070124 TraesCS3D01G531900 chr3D_607922751 chr3D 607922751 T T G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 607922801 607923646 846 5 0.591016548463357 RFvsST 486037117 614675133 128638017 no 918.452455070124 TraesCS3D01G531900 chr3D_607923589 chr3D 607923589 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 607922801 607923646 846 5 0.591016548463357 RFvsST 486037117 614675133 128638017 no 918.452455070124 TraesCS3D01G531900 chr3D_607922846 chr3D 607922846 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 607922801 607923646 846 5 0.591016548463357 RFvsST 486037117 614675133 128638017 no 918.452455070124 TraesCS3D01G532300 chr3D_608401986 chr3D 608401986 A A G G 4 missense_variant MODERATE transcript non_Triplet 608401134 608402294 1161 5 0.430663221360896 RFvsST 486037117 614675133 128638017 no 141.513707639112 TraesCS3D01G532300 chr3D_608401679 chr3D 608401679 C C A A 4 synonymous_variant LOW transcript non_Triplet 608401134 608402294 1161 5 0.430663221360896 RFvsST 486037117 614675133 128638017 no 141.513707639112 TraesCS3D01G532300 chr3D_608402398 chr3D 608402398 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 608401134 608402294 1161 5 0.430663221360896 RFvsST 486037117 614675133 128638017 no 141.513707639112 TraesCS3D01G532300 chr3D_608402147 chr3D 608402147 T T C C 4 synonymous_variant LOW transcript non_Triplet 608401134 608402294 1161 5 0.430663221360896 RFvsST 486037117 614675133 128638017 no 141.513707639112 TraesCS3D01G532300 chr3D_608402372 chr3D 608402372 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 608401134 608402294 1161 5 0.430663221360896 RFvsST 486037117 614675133 128638017 no 141.513707639112 TraesCS3D01G533600 chr3D_609085251 chr3D 609085251 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609082427 609084694 2268 3 0.132275132275132 RFvsST 486037117 614675133 128638017 no 11.8644915588257 TraesCS3D01G533600 chr3D_609088794 chr3D 609088794 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609082427 609084694 2268 3 0.132275132275132 RFvsST 486037117 614675133 128638017 no 11.8644915588257 TraesCS3D01G533600 chr3D_609085341 chr3D 609085341 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609082427 609084694 2268 3 0.132275132275132 RFvsST 486037117 614675133 128638017 no 11.8644915588257 TraesCS3D01G533700 chr3D_609088059 chr3D 609088059 A A G G 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086116 chr3D 609086116 G G A A 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609088112 chr3D 609088112 A A G G 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086020 chr3D 609086020 G G A A 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609088126 chr3D 609088126 T T C C 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609088050 chr3D 609088050 G G A A 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086011 chr3D 609086011 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609085458 chr3D 609085458 T T C C 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086016 chr3D 609086016 T T C C 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609085846 chr3D 609085846 G G A A 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609087974 chr3D 609087974 C C T T 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609087232 chr3D 609087232 A A G G 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609087990 chr3D 609087990 C C T T 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086296 chr3D 609086296 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086113 chr3D 609086113 A A G G 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609087717 chr3D 609087717 T T G G 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086024 chr3D 609086024 A A C C 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609085421 chr3D 609085421 G G T T 4 missense_variant MODERATE transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533700 chr3D_609086524 chr3D 609086524 G G A A 4 synonymous_variant LOW transcript unique_Triplet 609085377 609088471 3095 19 0.61389337641357 RFvsST 486037117 614675133 128638017 no 468.729808124142 TraesCS3D01G533800 chr3D_609104401 chr3D 609104401 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609104422 609106969 2548 4 0.156985871271586 RFvsST 486037117 614675133 128638017 no 5.49800585047034 TraesCS3D01G533800 chr3D_609104338 chr3D 609104338 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609104422 609106969 2548 4 0.156985871271586 RFvsST 486037117 614675133 128638017 no 5.49800585047034 TraesCS3D01G533800 chr3D_609104442 chr3D 609104442 G G T T 4 synonymous_variant LOW transcript unique_Triplet 609104422 609106969 2548 4 0.156985871271586 RFvsST 486037117 614675133 128638017 no 5.49800585047034 TraesCS3D01G533800 chr3D_609106976 chr3D 609106976 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 609104422 609106969 2548 4 0.156985871271586 RFvsST 486037117 614675133 128638017 no 5.49800585047034 TraesCS3D01G535900 chr3D_609930655 chr3D 609930655 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 609928859 609929056 198 2 1.01010101010101 RFvsST 486037117 614675133 128638017 no 23.0134305073563 TraesCS3D01G535900 chr3D_609930659 chr3D 609930659 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 609928859 609929056 198 2 1.01010101010101 RFvsST 486037117 614675133 128638017 no 23.0134305073563 TraesCS3D01G537900 chr3D_610931032 chr3D 610931032 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 610929362 610931074 1713 1 0.0583771161704612 RFvsST 486037117 614675133 128638017 no 430.645168597238 TraesCS3D01G539900 chr3D_611558852 chr3D 611558852 C G C G 3 synonymous_variant LOW transcript non_Triplet 611557940 611559750 1811 1 0.0552181115405853 RFvsST 486037117 614675133 128638017 no 208.445830460775 TraesCS4A01G000900 chr4A_745577 chr4A 745577 G G A A 4 synonymous_variant LOW transcript unique_Triplet 745079 749992 4914 1 0.0203500203500203 RFvsST 189613 583707903 583518291 no 137.628986784767 TraesCS4A01G005900 chr4A_3445122 chr4A 3445122 C C A A 4 missense_variant MODERATE transcript unique_Triplet 3442258 3445130 2873 2 0.0696136442742778 RFvsST 189613 583707903 583518291 no 64.2152590020792 TraesCS4A01G005900 chr4A_3448132 chr4A 3448132 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 3442258 3445130 2873 2 0.0696136442742778 RFvsST 189613 583707903 583518291 no 64.2152590020792 TraesCS4A01G012400 chr4A_7157046 chr4A 7157046 C T C T 3 missense_variant MODERATE transcript non_Triplet 7157026 7157619 594 1 0.168350168350168 RFvsST 189613 583707903 583518291 no 359.985431227126 TraesCS4A01G012600 chr4A_7167563 chr4A 7167563 C A C A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 7164881 7167854 2974 1 0.0336247478143914 RFvsST 189613 583707903 583518291 no 134.026418319446 TraesCS4A01G012900 chr4A_7407658 chr4A 7407658 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 7400880 7404289 3410 2 0.0586510263929619 RFvsST 189613 583707903 583518291 no 20.2764769327658 TraesCS4A01G012900 chr4A_7404109 chr4A 7404109 A T A T 3 synonymous_variant LOW transcript unique_Triplet 7400880 7404289 3410 2 0.0586510263929619 RFvsST 189613 583707903 583518291 no 20.2764769327658 TraesCS4A01G013300 chr4A_7598953 chr4A 7598953 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 7599163 7599363 201 1 0.497512437810945 RFvsST 189613 583707903 583518291 no 70.4188245012296 TraesCS4A01G013400 chr4A_7739743 chr4A 7739743 A G A G 3 missense_variant MODERATE transcript unique_Triplet 7738895 7741724 2830 1 0.0353356890459364 RFvsST 189613 583707903 583518291 no 40.7697873357479 TraesCS4A01G016400 chr4A_11188435 chr4A 11188435 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 11183282 11188151 4870 1 0.0205338809034908 RFvsST 189613 583707903 583518291 no 1139.48508172872 TraesCS4A01G017300 chr4A_11675907 chr4A 11675907 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11671310 11675641 4332 4 0.0923361034164358 RFvsST 189613 583707903 583518291 no 29.601068203331 TraesCS4A01G017300 chr4A_11671414 chr4A 11671414 A G A G 3 synonymous_variant LOW transcript unique_Triplet 11671310 11675641 4332 4 0.0923361034164358 RFvsST 189613 583707903 583518291 no 29.601068203331 TraesCS4A01G017300 chr4A_11675087 chr4A 11675087 T C T C 3 synonymous_variant LOW transcript unique_Triplet 11671310 11675641 4332 4 0.0923361034164358 RFvsST 189613 583707903 583518291 no 29.601068203331 TraesCS4A01G017300 chr4A_11675698 chr4A 11675698 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11671310 11675641 4332 4 0.0923361034164358 RFvsST 189613 583707903 583518291 no 29.601068203331 TraesCS4A01G017400 chr4A_11677029 chr4A 11677029 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11676825 11678425 1601 3 0.18738288569644 RFvsST 189613 583707903 583518291 no 106.864960529312 TraesCS4A01G017400 chr4A_11677576 chr4A 11677576 G G C C 4 missense_variant MODERATE transcript unique_Triplet 11676825 11678425 1601 3 0.18738288569644 RFvsST 189613 583707903 583518291 no 106.864960529312 TraesCS4A01G017400 chr4A_11676896 chr4A 11676896 C T C T 3 missense_variant MODERATE transcript unique_Triplet 11676825 11678425 1601 3 0.18738288569644 RFvsST 189613 583707903 583518291 no 106.864960529312 TraesCS4A01G018000 chr4A_11811377 chr4A 11811377 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11808307 11811296 2990 4 0.133779264214047 RFvsST 189613 583707903 583518291 no 54.2297749493194 TraesCS4A01G018000 chr4A_11811345 chr4A 11811345 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11808307 11811296 2990 4 0.133779264214047 RFvsST 189613 583707903 583518291 no 54.2297749493194 TraesCS4A01G018000 chr4A_11811173 chr4A 11811173 G A G A 3 synonymous_variant LOW transcript unique_Triplet 11808307 11811296 2990 4 0.133779264214047 RFvsST 189613 583707903 583518291 no 54.2297749493194 TraesCS4A01G018000 chr4A_11811109 chr4A 11811109 C T C T 3 missense_variant MODERATE transcript unique_Triplet 11808307 11811296 2990 4 0.133779264214047 RFvsST 189613 583707903 583518291 no 54.2297749493194 TraesCS4A01G023800 chr4A_16969996 chr4A 16969996 G T G T 3 missense_variant MODERATE transcript unique_Triplet 16969455 16971937 2483 1 0.0402738622633911 RFvsST 189613 583707903 583518291 no 80.7986642033746 TraesCS4A01G025200 chr4A_17267809 chr4A 17267809 C G C G 3 missense_variant MODERATE transcript unique_Triplet 17264008 17267851 3844 1 0.0260145681581686 RFvsST 189613 583707903 583518291 no 379.642663007835 TraesCS4A01G025500 chr4A_17675779 chr4A 17675779 G A G A 3 synonymous_variant LOW transcript unique_Triplet 17675206 17676310 1105 1 0.0904977375565611 RFvsST 189613 583707903 583518291 no 140.768471979524 TraesCS4A01G025900 chr4A_17801758 chr4A 17801758 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17802482 17805332 2851 3 0.105226236408278 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G025900 chr4A_17802789 chr4A 17802789 G T G T 3 missense_variant MODERATE transcript non_Triplet 17802482 17805332 2851 3 0.105226236408278 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G025900 chr4A_17804176 chr4A 17804176 G A G A 3 missense_variant MODERATE transcript non_Triplet 17802482 17805332 2851 3 0.105226236408278 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G030200 chr4A_23601461 chr4A 23601461 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 23597332 23599313 1982 1 0.0504540867810293 RFvsST 189613 583707903 583518291 no 3.42608419598459 TraesCS4A01G036600 chr4A_29069708 chr4A 29069708 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 29073015 29077951 4937 1 0.0202552157180474 RFvsST 189613 583707903 583518291 no 91.3715797669398 TraesCS4A01G043600 chr4A_36377074 chr4A 36377074 T C T C 3 missense_variant MODERATE transcript unique_Triplet 36376173 36385803 9631 1 0.0103831377842384 RFvsST 189613 583707903 583518291 no 34.1204530447251 TraesCS4A01G044700 chr4A_37046456 chr4A 37046456 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 37044345 37046529 2185 1 0.045766590389016 RFvsST 189613 583707903 583518291 no 239.702251828454 TraesCS4A01G044800 chr4A_37051156 chr4A 37051156 G A G A 3 missense_variant MODERATE transcript unique_Triplet 37047804 37051292 3489 1 0.0286615075952995 RFvsST 189613 583707903 583518291 no 37.8334505283401 TraesCS4A01G044900 chr4A_37067185 chr4A 37067185 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 37058424 37062297 3874 4 0.103252452245741 RFvsST 189613 583707903 583518291 no 15.7679955420058 TraesCS4A01G044900 chr4A_37063084 chr4A 37063084 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 37058424 37062297 3874 4 0.103252452245741 RFvsST 189613 583707903 583518291 no 15.7679955420058 TraesCS4A01G044900 chr4A_37067208 chr4A 37067208 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 37058424 37062297 3874 4 0.103252452245741 RFvsST 189613 583707903 583518291 no 15.7679955420058 TraesCS4A01G044900 chr4A_37058435 chr4A 37058435 C T C T 3 missense_variant MODERATE transcript unique_Triplet 37058424 37062297 3874 4 0.103252452245741 RFvsST 189613 583707903 583518291 no 15.7679955420058 TraesCS4A01G045100 chr4A_37301659 chr4A 37301659 G T G T 3 missense_variant MODERATE transcript unique_Triplet 37299925 37301889 1965 1 0.0508905852417303 RFvsST 189613 583707903 583518291 no 50.1858159193417 TraesCS4A01G046800 chr4A_38364976 chr4A 38364976 C C A A 4 missense_variant MODERATE transcript unique_Triplet 38363059 38369102 6044 1 0.0165453342157512 RFvsST 189613 583707903 583518291 no 1075.35423986135 TraesCS4A01G049200 chr4A_40245786 chr4A 40245786 G G A A 4 missense_variant MODERATE transcript unique_Triplet 40245545 40250082 4538 3 0.0661084178052005 RFvsST 189613 583707903 583518291 no 143.390786458596 TraesCS4A01G049200 chr4A_40250065 chr4A 40250065 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 40245545 40250082 4538 3 0.0661084178052005 RFvsST 189613 583707903 583518291 no 143.390786458596 TraesCS4A01G049200 chr4A_40245610 chr4A 40245610 G G T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 40245545 40250082 4538 3 0.0661084178052005 RFvsST 189613 583707903 583518291 no 143.390786458596 TraesCS4A01G049300 chr4A_40250889 chr4A 40250889 G G T T 4 synonymous_variant LOW transcript unique_Triplet 40250716 40253174 2459 1 0.0406669377795852 RFvsST 189613 583707903 583518291 no 2269.52797554355 TraesCS4A01G049500 chr4A_40283781 chr4A 40283781 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 40282072 40283878 1807 4 0.221361372440509 RFvsST 189613 583707903 583518291 no 155.346068341425 TraesCS4A01G049500 chr4A_40283833 chr4A 40283833 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 40282072 40283878 1807 4 0.221361372440509 RFvsST 189613 583707903 583518291 no 155.346068341425 TraesCS4A01G049500 chr4A_40283876 chr4A 40283876 T T C C 4 stop_lost&splice_region_variant HIGH transcript nonUnique_Triplet 40282072 40283878 1807 4 0.221361372440509 RFvsST 189613 583707903 583518291 no 155.346068341425 TraesCS4A01G049500 chr4A_40282070 chr4A 40282070 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 40282072 40283878 1807 4 0.221361372440509 RFvsST 189613 583707903 583518291 no 155.346068341425 TraesCS4A01G049700 chr4A_40443801 chr4A 40443801 C C T T 4 synonymous_variant LOW transcript unique_Triplet 40442595 40444517 1923 5 0.260010400416017 RFvsST 189613 583707903 583518291 no 88.9607844106632 TraesCS4A01G049700 chr4A_40442385 chr4A 40442385 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 40442595 40444517 1923 5 0.260010400416017 RFvsST 189613 583707903 583518291 no 88.9607844106632 TraesCS4A01G049700 chr4A_40443646 chr4A 40443646 A A G G 4 missense_variant MODERATE transcript unique_Triplet 40442595 40444517 1923 5 0.260010400416017 RFvsST 189613 583707903 583518291 no 88.9607844106632 TraesCS4A01G049700 chr4A_40444445 chr4A 40444445 C C T T 4 missense_variant MODERATE transcript unique_Triplet 40442595 40444517 1923 5 0.260010400416017 RFvsST 189613 583707903 583518291 no 88.9607844106632 TraesCS4A01G049700 chr4A_40443193 chr4A 40443193 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 40442595 40444517 1923 5 0.260010400416017 RFvsST 189613 583707903 583518291 no 88.9607844106632 TraesCS4A01G049900 chr4A_40542730 chr4A 40542730 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 40538552 40544144 5593 1 0.0178794922224209 RFvsST 189613 583707903 583518291 no 94.0831433778438 TraesCS4A01G050000 chr4A_40861369 chr4A 40861369 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 40860014 40861390 1377 1 0.0726216412490922 RFvsST 189613 583707903 583518291 no 48.1090015549039 TraesCS4A01G050200 chr4A_40879371 chr4A 40879371 T T C C 4 missense_variant MODERATE transcript unique_Triplet 40878443 40883044 4602 2 0.0434593654932638 RFvsST 189613 583707903 583518291 no 61.6335567192914 TraesCS4A01G050200 chr4A_40879550 chr4A 40879550 G G A A 4 missense_variant MODERATE transcript unique_Triplet 40878443 40883044 4602 2 0.0434593654932638 RFvsST 189613 583707903 583518291 no 61.6335567192914 TraesCS4A01G050500 chr4A_41114477 chr4A 41114477 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 41112135 41115809 3675 1 0.0272108843537415 RFvsST 189613 583707903 583518291 no 459.431092502077 TraesCS4A01G051000 chr4A_41952438 chr4A 41952438 A A G G 4 synonymous_variant LOW transcript unique_Triplet 41952351 41959682 7332 1 0.0136388434260775 RFvsST 189613 583707903 583518291 no 261.364265428926 TraesCS4A01G052400 chr4A_43365322 chr4A 43365322 C C T T 4 synonymous_variant LOW transcript non_Triplet 43362765 43365563 2799 1 0.0357270453733476 RFvsST 189613 583707903 583518291 no 104.95888678218 TraesCS4A01G057200 chr4A_47750066 chr4A 47750066 A G A G 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 47741184 47761455 20272 1 0.00493291239147593 RFvsST 189613 583707903 583518291 no 73.3827138157706 TraesCS4A01G062100 chr4A_58884151 chr4A 58884151 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 58878577 58884041 5465 1 0.0182982616651418 RFvsST 189613 583707903 583518291 no 150.64374597749 TraesCS4A01G067400 chr4A_65463089 chr4A 65463089 A G A G 3 synonymous_variant LOW transcript unique_Triplet 65456972 65465652 8681 1 0.0115194102061974 RFvsST 189613 583707903 583518291 no 375.109126750458 TraesCS4A01G071000 chr4A_68455304 chr4A 68455304 G G T T 4 intron_variant MODIFIER transcript non_Triplet 68455101 68464028 8928 4 0.0448028673835125 RFvsST 189613 583707903 583518291 no 17.1412128450142 TraesCS4A01G071000 chr4A_68460412 chr4A 68460412 G G A A 4 missense_variant MODERATE transcript non_Triplet 68455101 68464028 8928 4 0.0448028673835125 RFvsST 189613 583707903 583518291 no 17.1412128450142 TraesCS4A01G071000 chr4A_68460958 chr4A 68460958 C T C T 3 intron_variant MODIFIER transcript non_Triplet 68455101 68464028 8928 4 0.0448028673835125 RFvsST 189613 583707903 583518291 no 17.1412128450142 TraesCS4A01G071000 chr4A_68456934 chr4A 68456934 C T C T 3 intron_variant MODIFIER transcript non_Triplet 68455101 68464028 8928 4 0.0448028673835125 RFvsST 189613 583707903 583518291 no 17.1412128450142 TraesCS4A01G071200 chr4A_68565670 chr4A 68565670 C A C A 3 missense_variant MODERATE transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68561974 chr4A 68561974 A A G G 4 missense_variant MODERATE transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68561349 chr4A 68561349 T G T G 3 synonymous_variant LOW transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68565343 chr4A 68565343 T C T C 3 missense_variant MODERATE transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68561142 chr4A 68561142 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68561325 chr4A 68561325 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071200 chr4A_68566284 chr4A 68566284 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 68560993 68566420 5428 7 0.128960943257185 RFvsST 189613 583707903 583518291 no 498.794799722694 TraesCS4A01G071400 chr4A_68690883 chr4A 68690883 T A T A 3 intron_variant MODIFIER transcript unique_Triplet 68689176 68691086 1911 3 0.156985871271586 RFvsST 189613 583707903 583518291 no 136.977870696208 TraesCS4A01G071400 chr4A_68691437 chr4A 68691437 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 68689176 68691086 1911 3 0.156985871271586 RFvsST 189613 583707903 583518291 no 136.977870696208 TraesCS4A01G071400 chr4A_68691402 chr4A 68691402 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 68689176 68691086 1911 3 0.156985871271586 RFvsST 189613 583707903 583518291 no 136.977870696208 TraesCS4A01G071600 chr4A_69268323 chr4A 69268323 G C G C 3 missense_variant MODERATE transcript unique_Triplet 69266325 69271418 5094 1 0.0196309383588536 RFvsST 189613 583707903 583518291 no 194.007922040475 TraesCS4A01G071700 chr4A_69315414 chr4A 69315414 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 69313926 69315540 1615 1 0.0619195046439629 RFvsST 189613 583707903 583518291 no 1548.38479184206 TraesCS4A01G072100 chr4A_69831362 chr4A 69831362 G A G A 3 missense_variant MODERATE transcript unique_Triplet 69831113 69834481 3369 1 0.0296823983377857 RFvsST 189613 583707903 583518291 no 399.116447589627 TraesCS4A01G089400 chr4A_95372967 chr4A 95372967 T C T C 3 synonymous_variant LOW transcript unique_Triplet 95371567 95374405 2839 1 0.0352236703064459 RFvsST 189613 583707903 583518291 no 650.691824801619 TraesCS4A01G094200 chr4A_102390260 chr4A 102390260 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 102387584 102388031 448 1 0.223214285714286 RFvsST 189613 583707903 583518291 no 82.4456203714166 TraesCS4A01G096300 chr4A_104391138 chr4A 104391138 C C A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 104391082 104391686 605 1 0.165289256198347 RFvsST 189613 583707903 583518291 no 157.799139717395 TraesCS4A01G100800 chr4A_113325240 chr4A 113325240 G C G C 3 synonymous_variant LOW transcript unique_Triplet 113324610 113325338 729 1 0.137174211248285 RFvsST 189613 583707903 583518291 no 198.273660650549 TraesCS4A01G104800 chr4A_118639579 chr4A 118639579 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 118635496 118639831 4336 1 0.0230627306273063 RFvsST 189613 583707903 583518291 no 324.559322647041 TraesCS4A01G105400 chr4A_119692981 chr4A 119692981 A A T T 4 missense_variant MODERATE transcript unique_Triplet 119691019 119697276 6258 1 0.0159795461808885 RFvsST 189613 583707903 583518291 no 16.9610303055594 TraesCS4A01G106300 chr4A_120569800 chr4A 120569800 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 120569785 120572394 2610 1 0.0383141762452107 RFvsST 189613 583707903 583518291 no 22.525814760448 TraesCS4A01G123300 chr4A_154529206 chr4A 154529206 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 154500037 154528603 28567 1 0.00350054258410054 RFvsST 189613 583707903 583518291 no 2084.13705867055 TraesCS4A01G124200 chr4A_157321961 chr4A 157321961 C C A A 4 missense_variant MODERATE transcript unique_Triplet 157320655 157323785 3131 2 0.0638773554774832 RFvsST 189613 583707903 583518291 no 375.494037849833 TraesCS4A01G124200 chr4A_157321960 chr4A 157321960 G G A A 4 missense_variant MODERATE transcript unique_Triplet 157320655 157323785 3131 2 0.0638773554774832 RFvsST 189613 583707903 583518291 no 375.494037849833 TraesCS4A01G124800 chr4A_158183895 chr4A 158183895 G A G A 3 synonymous_variant LOW transcript unique_Triplet 158182966 158189555 6590 1 0.0151745068285281 RFvsST 189613 583707903 583518291 no 330.802674419059 TraesCS4A01G125100 chr4A_160249345 chr4A 160249345 A G A G 3 synonymous_variant LOW transcript non_Triplet 160246890 160259067 12178 1 0.00821152898669732 RFvsST 189613 583707903 583518291 no 194.780200017424 TraesCS4A01G129200 chr4A_167746409 chr4A 167746409 C A C A 3 missense_variant MODERATE transcript unique_Triplet 167745185 167749347 4163 1 0.0240211386019697 RFvsST 189613 583707903 583518291 no 21.8757564166125 TraesCS4A01G131500 chr4A_175853122 chr4A 175853122 A T A T 3 missense_variant MODERATE transcript nonUnique_Triplet 175852558 175857431 4874 1 0.0205170291341814 RFvsST 189613 583707903 583518291 no 961.721793150054 TraesCS4A01G136300 chr4A_190834132 chr4A 190834132 T G T G 3 stop_lost HIGH transcript nonUnique_Triplet 190823593 190835088 11496 1 0.00869867780097425 RFvsST 189613 583707903 583518291 no 291.094001675327 TraesCS4A01G136700 chr4A_192618004 chr4A 192618004 A A G G 4 synonymous_variant LOW transcript unique_Triplet 192617883 192626197 8315 1 0.0120264582080577 RFvsST 189613 583707903 583518291 no 77.0244793593362 TraesCS4A01G139900 chr4A_212683686 chr4A 212683686 C C T T 4 synonymous_variant LOW transcript non_Triplet 212682333 212694592 12260 1 0.00815660685154975 RFvsST 189613 583707903 583518291 no 196.658855789331 TraesCS4A01G140100 chr4A_214311846 chr4A 214311846 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 214311858 214313367 1510 1 0.0662251655629139 RFvsST 189613 583707903 583518291 no 318.134947745595 TraesCS4A01G141900 chr4A_225309588 chr4A 225309588 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 225313465 225313824 360 1 0.277777777777778 RFvsST 189613 583707903 583518291 no 59.7445061229042 TraesCS4A01G143100 chr4A_234127314 chr4A 234127314 C C T T 4 missense_variant MODERATE transcript non_Triplet 234125585 234132425 6841 2 0.029235491887151 RFvsST 189613 583707903 583518291 no 217.949207408287 TraesCS4A01G143100 chr4A_234127092 chr4A 234127092 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 234125585 234132425 6841 2 0.029235491887151 RFvsST 189613 583707903 583518291 no 217.949207408287 TraesCS4A01G143200 chr4A_235662370 chr4A 235662370 A A G G 4 synonymous_variant LOW transcript non_Triplet 235648420 235662516 14097 1 0.00709370788110946 RFvsST 189613 583707903 583518291 no 187.148832345528 TraesCS4A01G144300 chr4A_242663063 chr4A 242663063 A A G G 4 intron_variant MODIFIER transcript non_Triplet 242659049 242663723 4675 1 0.0213903743315508 RFvsST 189613 583707903 583518291 no 9.30618909525171 TraesCS4A01G146100 chr4A_253445308 chr4A 253445308 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 253445513 253445917 405 1 0.246913580246914 RFvsST 189613 583707903 583518291 no 25.8529539015999 TraesCS4A01G149500 chr4A_286756156 chr4A 286756156 C T C T 3 missense_variant MODERATE transcript non_Triplet 286744191 286756220 12030 1 0.00831255195344971 RFvsST 189613 583707903 583518291 no 98.7812995822913 TraesCS4A01G151000 chr4A_299599559 chr4A 299599559 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 299599686 299602478 2793 1 0.0358037952022914 RFvsST 189613 583707903 583518291 no 526.199386547726 TraesCS4A01G156600 chr4A_312881838 chr4A 312881838 T T C C 4 missense_variant MODERATE transcript non_Triplet 312879736 312883200 3465 1 0.0288600288600289 RFvsST 189613 583707903 583518291 no 36.7215876270536 TraesCS4A01G157700 chr4A_323050408 chr4A 323050408 A G A G 3 synonymous_variant LOW transcript non_Triplet 323047430 323051285 3856 1 0.0259336099585062 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G158100 chr4A_324706673 chr4A 324706673 G A G A 3 intron_variant MODIFIER transcript non_Triplet 324705956 324708155 2200 1 0.0454545454545455 RFvsST 189613 583707903 583518291 no 320.835566070136 TraesCS4A01G158400 chr4A_327254796 chr4A 327254796 T C T C 3 synonymous_variant LOW transcript non_Triplet 327253868 327260689 6822 1 0.0146584579302257 RFvsST 189613 583707903 583518291 no 723.523350378294 TraesCS4A01G159100 chr4A_331628946 chr4A 331628946 T C T C 3 synonymous_variant LOW transcript non_Triplet 331628893 331632022 3130 1 0.0319488817891374 RFvsST 189613 583707903 583518291 no 56.6752962392545 TraesCS4A01G159500 chr4A_340492459 chr4A 340492459 G A G A 3 intron_variant MODIFIER transcript non_Triplet 340492209 340508791 16583 2 0.0120605439305313 RFvsST 189613 583707903 583518291 no 359.269110684366 TraesCS4A01G159500 chr4A_340491465 chr4A 340491465 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 340492209 340508791 16583 2 0.0120605439305313 RFvsST 189613 583707903 583518291 no 359.269110684366 TraesCS4A01G162900 chr4A_360665951 chr4A 360665951 A G A G 3 missense_variant MODERATE transcript non_Triplet 360652327 360667234 14908 1 0.00670780788838208 RFvsST 189613 583707903 583518291 no 151.765192298731 TraesCS4A01G168000 chr4A_418127481 chr4A 418127481 G A G A 3 intron_variant MODIFIER transcript non_Triplet 418125197 418133147 7951 1 0.0125770343353037 RFvsST 189613 583707903 583518291 no 13.4712133032547 TraesCS4A01G169500 chr4A_427884006 chr4A 427884006 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 427883173 427883930 758 1 0.131926121372032 RFvsST 189613 583707903 583518291 no 131.418023050048 TraesCS4A01G173500 chr4A_441762728 chr4A 441762728 A G A G 3 missense_variant MODERATE transcript unique_Triplet 441753702 441764556 10855 1 0.00921234454168586 RFvsST 189613 583707903 583518291 no 52.7412227327852 TraesCS4A01G182300 chr4A_457834935 chr4A 457834935 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 457826318 457836526 10209 1 0.00979527867567832 RFvsST 189613 583707903 583518291 no 530.817843093118 TraesCS4A01G184900 chr4A_464551651 chr4A 464551651 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 464549148 464568089 18942 1 0.0052792735719565 RFvsST 189613 583707903 583518291 no 7.58693698385372 TraesCS4A01G186100 chr4A_465327333 chr4A 465327333 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 465326992 465330134 3143 1 0.0318167356029271 RFvsST 189613 583707903 583518291 no 222.329077723443 TraesCS4A01G186200 chr4A_465403914 chr4A 465403914 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 465403704 465408630 4927 1 0.0202963263649279 RFvsST 189613 583707903 583518291 no 192.594335141429 TraesCS4A01G187100 chr4A_465894085 chr4A 465894085 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 465893542 465899342 5801 1 0.0172384071711774 RFvsST 189613 583707903 583518291 no 95.7308780479908 TraesCS4A01G192300 chr4A_472924754 chr4A 472924754 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 472918003 472921049 3047 1 0.0328191663931736 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G209000 chr4A_502030314 chr4A 502030314 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 502027925 502030925 3001 1 0.0333222259246918 RFvsST 189613 583707903 583518291 no 296.790316065033 TraesCS4A01G218400 chr4A_520125924 chr4A 520125924 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 520125235 520127884 2650 1 0.0377358490566038 RFvsST 189613 583707903 583518291 no 3202.38761306163 TraesCS4A01G221900 chr4A_527912127 chr4A 527912127 G A G A 3 missense_variant MODERATE transcript unique_Triplet 527902974 527913262 10289 1 0.00971911750413063 RFvsST 189613 583707903 583518291 no 263.095785954283 TraesCS4A01G229200 chr4A_537594050 chr4A 537594050 G G A A 4 synonymous_variant LOW transcript unique_Triplet 537592342 537596508 4167 3 0.0719942404607631 RFvsST 189613 583707903 583518291 no 57.0531654216815 TraesCS4A01G229200 chr4A_537592108 chr4A 537592108 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 537592342 537596508 4167 3 0.0719942404607631 RFvsST 189613 583707903 583518291 no 57.0531654216815 TraesCS4A01G229200 chr4A_537592555 chr4A 537592555 A A G G 4 synonymous_variant LOW transcript unique_Triplet 537592342 537596508 4167 3 0.0719942404607631 RFvsST 189613 583707903 583518291 no 57.0531654216815 TraesCS4A01G229400 chr4A_537955415 chr4A 537955415 C C A A 4 missense_variant MODERATE transcript unique_Triplet 537949589 537957582 7994 2 0.0250187640730548 RFvsST 189613 583707903 583518291 no 260.865168097992 TraesCS4A01G229400 chr4A_537957853 chr4A 537957853 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 537949589 537957582 7994 2 0.0250187640730548 RFvsST 189613 583707903 583518291 no 260.865168097992 TraesCS4A01G229700 chr4A_538908131 chr4A 538908131 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 538905249 538906763 1515 1 0.066006600660066 RFvsST 189613 583707903 583518291 no No_match TraesCS4A01G230000 chr4A_539160113 chr4A 539160113 A A C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 539156556 539160442 3887 1 0.0257267815796244 RFvsST 189613 583707903 583518291 no 62.2914955392664 TraesCS4A01G230100 chr4A_539295651 chr4A 539295651 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 539288267 539295938 7672 4 0.0521376433785193 RFvsST 189613 583707903 583518291 no 378.732716565161 TraesCS4A01G230100 chr4A_539290705 chr4A 539290705 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539288267 539295938 7672 4 0.0521376433785193 RFvsST 189613 583707903 583518291 no 378.732716565161 TraesCS4A01G230100 chr4A_539290837 chr4A 539290837 A A G G 4 synonymous_variant LOW transcript unique_Triplet 539288267 539295938 7672 4 0.0521376433785193 RFvsST 189613 583707903 583518291 no 378.732716565161 TraesCS4A01G230100 chr4A_539294350 chr4A 539294350 C C A A 4 synonymous_variant LOW transcript unique_Triplet 539288267 539295938 7672 4 0.0521376433785193 RFvsST 189613 583707903 583518291 no 378.732716565161 TraesCS4A01G230800 chr4A_540016645 chr4A 540016645 C C G G 4 missense_variant MODERATE transcript unique_Triplet 540014447 540017248 2802 2 0.0713775874375446 RFvsST 189613 583707903 583518291 no 114.875951806484 TraesCS4A01G230800 chr4A_540017168 chr4A 540017168 C C T T 4 missense_variant MODERATE transcript unique_Triplet 540014447 540017248 2802 2 0.0713775874375446 RFvsST 189613 583707903 583518291 no 114.875951806484 TraesCS4A01G231100 chr4A_540437047 chr4A 540437047 C C G G 4 missense_variant MODERATE transcript unique_Triplet 540433150 540437968 4819 1 0.0207511931936086 RFvsST 189613 583707903 583518291 no 134.884903521672 TraesCS4A01G231600 chr4A_541340685 chr4A 541340685 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 541337582 541340608 3027 3 0.0991080277502478 RFvsST 189613 583707903 583518291 no 102.846831116182 TraesCS4A01G231600 chr4A_541337842 chr4A 541337842 T T C C 4 synonymous_variant LOW transcript unique_Triplet 541337582 541340608 3027 3 0.0991080277502478 RFvsST 189613 583707903 583518291 no 102.846831116182 TraesCS4A01G231600 chr4A_541340792 chr4A 541340792 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 541337582 541340608 3027 3 0.0991080277502478 RFvsST 189613 583707903 583518291 no 102.846831116182 TraesCS4A01G234700 chr4A_543739410 chr4A 543739410 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 543735662 543740221 4560 3 0.0657894736842105 RFvsST 189613 583707903 583518291 no 355.419685509958 TraesCS4A01G234700 chr4A_543738605 chr4A 543738605 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 543735662 543740221 4560 3 0.0657894736842105 RFvsST 189613 583707903 583518291 no 355.419685509958 TraesCS4A01G234700 chr4A_543739982 chr4A 543739982 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 543735662 543740221 4560 3 0.0657894736842105 RFvsST 189613 583707903 583518291 no 355.419685509958 TraesCS4A01G235300 chr4A_544058487 chr4A 544058487 G G T T 4 missense_variant MODERATE transcript non_Triplet 544058447 544060908 2462 1 0.0406173842404549 RFvsST 189613 583707903 583518291 no 138.718814259631 TraesCS4A01G235600 chr4A_544200433 chr4A 544200433 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 544197932 544201050 3119 1 0.0320615581917281 RFvsST 189613 583707903 583518291 no 81.3220681932638 TraesCS4A01G235700 chr4A_544202284 chr4A 544202284 A A G G 4 missense_variant MODERATE transcript unique_Triplet 544201959 544204242 2284 3 0.131348511383538 RFvsST 189613 583707903 583518291 no 213.682045128446 TraesCS4A01G235700 chr4A_544204141 chr4A 544204141 A A G G 4 synonymous_variant LOW transcript unique_Triplet 544201959 544204242 2284 3 0.131348511383538 RFvsST 189613 583707903 583518291 no 213.682045128446 TraesCS4A01G235700 chr4A_544202440 chr4A 544202440 T T C C 4 missense_variant MODERATE transcript unique_Triplet 544201959 544204242 2284 3 0.131348511383538 RFvsST 189613 583707903 583518291 no 213.682045128446 TraesCS4A01G236100 chr4A_544887081 chr4A 544887081 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 544887198 544891670 4473 5 0.111781801922647 RFvsST 189613 583707903 583518291 no 776.035389636194 TraesCS4A01G236100 chr4A_544890717 chr4A 544890717 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 544887198 544891670 4473 5 0.111781801922647 RFvsST 189613 583707903 583518291 no 776.035389636194 TraesCS4A01G236100 chr4A_544891637 chr4A 544891637 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 544887198 544891670 4473 5 0.111781801922647 RFvsST 189613 583707903 583518291 no 776.035389636194 TraesCS4A01G236100 chr4A_544891604 chr4A 544891604 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 544887198 544891670 4473 5 0.111781801922647 RFvsST 189613 583707903 583518291 no 776.035389636194 TraesCS4A01G236100 chr4A_544891171 chr4A 544891171 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 544887198 544891670 4473 5 0.111781801922647 RFvsST 189613 583707903 583518291 no 776.035389636194 TraesCS4A01G236200 chr4A_544954508 chr4A 544954508 C C G G 4 missense_variant MODERATE transcript unique_Triplet 544953084 544954778 1695 1 0.0589970501474926 RFvsST 189613 583707903 583518291 no 141.784262123024 TraesCS4A01G236800 chr4A_545606919 chr4A 545606919 A A G G 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 545601815 545606948 5134 1 0.0194779898714453 RFvsST 189613 583707903 583518291 no 2914.01458599685 TraesCS4A01G237300 chr4A_546211640 chr4A 546211640 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 546210168 546212042 1875 1 0.0533333333333333 RFvsST 189613 583707903 583518291 no 46.0556114862697 TraesCS4A01G237400 chr4A_546258638 chr4A 546258638 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 546256267 546259001 2735 1 0.036563071297989 RFvsST 189613 583707903 583518291 no 184.688106904197 TraesCS4A01G313700 chr4A_604101780 chr4A 604101780 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 604104116 604105207 1092 5 0.457875457875458 RFvsST 583754800 744521639 160766840 no 189.221600664987 TraesCS4A01G313700 chr4A_604102617 chr4A 604102617 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 604104116 604105207 1092 5 0.457875457875458 RFvsST 583754800 744521639 160766840 no 189.221600664987 TraesCS4A01G313700 chr4A_604102241 chr4A 604102241 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 604104116 604105207 1092 5 0.457875457875458 RFvsST 583754800 744521639 160766840 no 189.221600664987 TraesCS4A01G313700 chr4A_604104889 chr4A 604104889 C T C T 3 missense_variant MODERATE transcript unique_Triplet 604104116 604105207 1092 5 0.457875457875458 RFvsST 583754800 744521639 160766840 no 189.221600664987 TraesCS4A01G313700 chr4A_604101791 chr4A 604101791 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 604104116 604105207 1092 5 0.457875457875458 RFvsST 583754800 744521639 160766840 no 189.221600664987 TraesCS4A01G315300 chr4A_605645857 chr4A 605645857 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 605644790 605646059 1270 1 0.078740157480315 RFvsST 583754800 744521639 160766840 no 396.550198357966 TraesCS4A01G315500 chr4A_605659570 chr4A 605659570 T G T G 3 missense_variant MODERATE transcript unique_Triplet 605656378 605659792 3415 1 0.0292825768667643 RFvsST 583754800 744521639 160766840 no 287.15612354597 TraesCS4A01G315800 chr4A_605726527 chr4A 605726527 T C T C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 605717729 605733179 15451 2 0.012944146009967 RFvsST 583754800 744521639 160766840 no 349.103905454888 TraesCS4A01G315800 chr4A_605732894 chr4A 605732894 C T C T 3 synonymous_variant LOW transcript unique_Triplet 605717729 605733179 15451 2 0.012944146009967 RFvsST 583754800 744521639 160766840 no 349.103905454888 TraesCS4A01G316400 chr4A_606366072 chr4A 606366072 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606370348 606374153 3806 2 0.0525486074619023 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G316400 chr4A_606365906 chr4A 606365906 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 606370348 606374153 3806 2 0.0525486074619023 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G316700 chr4A_606524088 chr4A 606524088 G G A A 4 synonymous_variant LOW transcript unique_Triplet 606523492 606525117 1626 1 0.0615006150061501 RFvsST 583754800 744521639 160766840 no 65.583583670846 TraesCS4A01G316900 chr4A_606586623 chr4A 606586623 G T G T 3 missense_variant MODERATE transcript non_Triplet 606586469 606587515 1047 1 0.0955109837631328 RFvsST 583754800 744521639 160766840 no 93.5522751304417 TraesCS4A01G317600 chr4A_606805750 chr4A 606805750 C T C T 3 missense_variant MODERATE transcript non_Triplet 606796975 606806270 9296 1 0.0107573149741824 RFvsST 583754800 744521639 160766840 no 462.834766749858 TraesCS4A01G317700 chr4A_606812029 chr4A 606812029 T T C C 4 synonymous_variant LOW transcript unique_Triplet 606811790 606812212 423 1 0.236406619385343 RFvsST 583754800 744521639 160766840 no 35.2899197061773 TraesCS4A01G317800 chr4A_607053280 chr4A 607053280 A A G G 4 missense_variant MODERATE transcript unique_Triplet 607045527 607055050 9524 1 0.0104997900041999 RFvsST 583754800 744521639 160766840 no 38.8146113543411 TraesCS4A01G318100 chr4A_607261243 chr4A 607261243 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 607261315 607262061 747 1 0.133868808567604 RFvsST 583754800 744521639 160766840 no 405.448374151252 TraesCS4A01G320000 chr4A_608832862 chr4A 608832862 T T C C 4 synonymous_variant LOW transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320000 chr4A_608835055 chr4A 608835055 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320000 chr4A_608828702 chr4A 608828702 T T C C 4 synonymous_variant LOW transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320000 chr4A_608828700 chr4A 608828700 G G A A 4 missense_variant MODERATE transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320000 chr4A_608835056 chr4A 608835056 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320000 chr4A_608834862 chr4A 608834862 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 608828643 608834674 6032 6 0.0994694960212202 RFvsST 583754800 744521639 160766840 no 23.0920870318869 TraesCS4A01G320500 chr4A_608983856 chr4A 608983856 C C T T 4 synonymous_variant LOW transcript unique_Triplet 608983186 608987723 4538 3 0.0661084178052005 RFvsST 583754800 744521639 160766840 no 115.90132193091 TraesCS4A01G320500 chr4A_608987615 chr4A 608987615 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 608983186 608987723 4538 3 0.0661084178052005 RFvsST 583754800 744521639 160766840 no 115.90132193091 TraesCS4A01G320500 chr4A_608983745 chr4A 608983745 C C A A 4 synonymous_variant LOW transcript unique_Triplet 608983186 608987723 4538 3 0.0661084178052005 RFvsST 583754800 744521639 160766840 no 115.90132193091 TraesCS4A01G321300 chr4A_609805169 chr4A 609805169 T T C C 4 synonymous_variant LOW transcript unique_Triplet 609804687 609807321 2635 2 0.0759013282732448 RFvsST 583754800 744521639 160766840 no 282.205255519601 TraesCS4A01G321300 chr4A_609807040 chr4A 609807040 C C A A 4 missense_variant MODERATE transcript unique_Triplet 609804687 609807321 2635 2 0.0759013282732448 RFvsST 583754800 744521639 160766840 no 282.205255519601 TraesCS4A01G321600 chr4A_609927997 chr4A 609927997 G G A A 4 missense_variant MODERATE transcript non_Triplet 609926193 609929495 3303 1 0.0302755071147442 RFvsST 583754800 744521639 160766840 no 120.118649821725 TraesCS4A01G322300 chr4A_610484276 chr4A 610484276 C C T T 4 missense_variant MODERATE transcript unique_Triplet 610484185 610490550 6366 1 0.0157084511467169 RFvsST 583754800 744521639 160766840 no 304.966028931898 TraesCS4A01G322400 chr4A_610493719 chr4A 610493719 G G C C 4 missense_variant MODERATE transcript unique_Triplet 610493560 610496978 3419 3 0.0877449546651068 RFvsST 583754800 744521639 160766840 no 150.091398617919 TraesCS4A01G322400 chr4A_610493685 chr4A 610493685 T T C C 4 missense_variant MODERATE transcript unique_Triplet 610493560 610496978 3419 3 0.0877449546651068 RFvsST 583754800 744521639 160766840 no 150.091398617919 TraesCS4A01G322400 chr4A_610493930 chr4A 610493930 A A G G 4 missense_variant MODERATE transcript unique_Triplet 610493560 610496978 3419 3 0.0877449546651068 RFvsST 583754800 744521639 160766840 no 150.091398617919 TraesCS4A01G323000 chr4A_611024716 chr4A 611024716 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 611025042 611028000 2959 1 0.0337952010814464 RFvsST 583754800 744521639 160766840 no 66.976475886869 TraesCS4A01G324400 chr4A_612060283 chr4A 612060283 G G C C 4 missense_variant MODERATE transcript non_Triplet 612059812 612061668 1857 1 0.053850296176629 RFvsST 583754800 744521639 160766840 no 171.360119936982 TraesCS4A01G326800 chr4A_613614948 chr4A 613614948 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 613606291 613615092 8802 4 0.0454442172233583 RFvsST 583754800 744521639 160766840 no 220.898647569911 TraesCS4A01G326800 chr4A_613610503 chr4A 613610503 T T C C 4 synonymous_variant LOW transcript unique_Triplet 613606291 613615092 8802 4 0.0454442172233583 RFvsST 583754800 744521639 160766840 no 220.898647569911 TraesCS4A01G326800 chr4A_613611606 chr4A 613611606 G G A A 4 missense_variant MODERATE transcript unique_Triplet 613606291 613615092 8802 4 0.0454442172233583 RFvsST 583754800 744521639 160766840 no 220.898647569911 TraesCS4A01G326800 chr4A_613610338 chr4A 613610338 G G A A 4 synonymous_variant LOW transcript unique_Triplet 613606291 613615092 8802 4 0.0454442172233583 RFvsST 583754800 744521639 160766840 no 220.898647569911 TraesCS4A01G328500 chr4A_614106534 chr4A 614106534 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 614101649 614103184 1536 1 0.0651041666666667 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G328900 chr4A_614241176 chr4A 614241176 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241256 chr4A 614241256 T T C C 4 synonymous_variant LOW transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241255 chr4A 614241255 G G A A 4 synonymous_variant LOW transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241032 chr4A 614241032 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241222 chr4A 614241222 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614244697 chr4A 614244697 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241105 chr4A 614241105 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614242140 chr4A 614242140 G G A A 4 synonymous_variant LOW transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G328900 chr4A_614241124 chr4A 614241124 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 614241223 614243111 1889 9 0.476442562202223 RFvsST 583754800 744521639 160766840 no 25.7769261028418 TraesCS4A01G329200 chr4A_614411587 chr4A 614411587 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 614401759 614406887 5129 2 0.0389939559368298 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G329200 chr4A_614411367 chr4A 614411367 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 614401759 614406887 5129 2 0.0389939559368298 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G329300 chr4A_614412406 chr4A 614412406 T T A A 4 missense_variant MODERATE transcript non_Triplet 614411595 614415624 4030 2 0.0496277915632754 RFvsST 583754800 744521639 160766840 no 18.4902819705598 TraesCS4A01G329300 chr4A_614415625 chr4A 614415625 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 614411595 614415624 4030 2 0.0496277915632754 RFvsST 583754800 744521639 160766840 no 18.4902819705598 TraesCS4A01G330500 chr4A_615220479 chr4A 615220479 G G T T 4 missense_variant MODERATE transcript non_Triplet 615219045 615222583 3539 1 0.0282565696524442 RFvsST 583754800 744521639 160766840 no 116.398587263967 TraesCS4A01G331600 chr4A_616231324 chr4A 616231324 C C T T 4 missense_variant MODERATE transcript unique_Triplet 616230369 616234110 3742 1 0.0267236771779797 RFvsST 583754800 744521639 160766840 no 6.98967944869662 TraesCS4A01G332100 chr4A_616507352 chr4A 616507352 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 616507393 616508992 1600 1 0.0625 RFvsST 583754800 744521639 160766840 no 30.0552719441941 TraesCS4A01G333800 chr4A_617097559 chr4A 617097559 C T C T 3 missense_variant MODERATE transcript non_Triplet 617094599 617097896 3298 1 0.0303214069132808 RFvsST 583754800 744521639 160766840 no 116.23167404527 TraesCS4A01G333900 chr4A_617233660 chr4A 617233660 A A G G 4 missense_variant MODERATE transcript unique_Triplet 617230785 617234228 3444 2 0.0580720092915215 RFvsST 583754800 744521639 160766840 no 248.156044057855 TraesCS4A01G333900 chr4A_617231997 chr4A 617231997 G G A A 4 missense_variant MODERATE transcript unique_Triplet 617230785 617234228 3444 2 0.0580720092915215 RFvsST 583754800 744521639 160766840 no 248.156044057855 TraesCS4A01G334400 chr4A_617445303 chr4A 617445303 C C T T 4 synonymous_variant LOW transcript unique_Triplet 617445072 617446375 1304 1 0.0766871165644172 RFvsST 583754800 744521639 160766840 no 690.468539046006 TraesCS4A01G334700 chr4A_617853922 chr4A 617853922 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 617849876 617853865 3990 1 0.025062656641604 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G336200 chr4A_618528528 chr4A 618528528 C A C A 3 missense_variant MODERATE transcript unique_Triplet 618528523 618530057 1535 3 0.195439739413681 RFvsST 583754800 744521639 160766840 no 132.549509492464 TraesCS4A01G336200 chr4A_618529826 chr4A 618529826 A A C C 4 missense_variant MODERATE transcript unique_Triplet 618528523 618530057 1535 3 0.195439739413681 RFvsST 583754800 744521639 160766840 no 132.549509492464 TraesCS4A01G336200 chr4A_618529916 chr4A 618529916 G A G A 3 synonymous_variant LOW transcript unique_Triplet 618528523 618530057 1535 3 0.195439739413681 RFvsST 583754800 744521639 160766840 no 132.549509492464 TraesCS4A01G341600 chr4A_621819009 chr4A 621819009 T T C C 4 missense_variant MODERATE transcript unique_Triplet 621816658 621819172 2515 3 0.119284294234592 RFvsST 583754800 744521639 160766840 no 271.068901812933 TraesCS4A01G341600 chr4A_621818231 chr4A 621818231 A A G G 4 synonymous_variant LOW transcript unique_Triplet 621816658 621819172 2515 3 0.119284294234592 RFvsST 583754800 744521639 160766840 no 271.068901812933 TraesCS4A01G341600 chr4A_621818735 chr4A 621818735 C C T T 4 synonymous_variant LOW transcript unique_Triplet 621816658 621819172 2515 3 0.119284294234592 RFvsST 583754800 744521639 160766840 no 271.068901812933 TraesCS4A01G341700 chr4A_621845164 chr4A 621845164 C C T T 4 synonymous_variant LOW transcript unique_Triplet 621843012 621849246 6235 1 0.0160384923817161 RFvsST 583754800 744521639 160766840 no 130.558982242006 TraesCS4A01G342100 chr4A_622174597 chr4A 622174597 C C T T 4 synonymous_variant LOW transcript non_Triplet 622173331 622175400 2070 1 0.0483091787439614 RFvsST 583754800 744521639 160766840 no 57.1288628936722 TraesCS4A01G342300 chr4A_622180290 chr4A 622180290 G G C C 4 stop_gained HIGH transcript non_Triplet 622180127 622181104 978 1 0.102249488752556 RFvsST 583754800 744521639 160766840 no 333.249334418566 TraesCS4A01G342400 chr4A_622226752 chr4A 622226752 C C T T 4 synonymous_variant LOW transcript non_Triplet 622221480 622227928 6449 3 0.0465188401302528 RFvsST 583754800 744521639 160766840 no 161.478830658434 TraesCS4A01G342400 chr4A_622225476 chr4A 622225476 C C T T 4 synonymous_variant LOW transcript non_Triplet 622221480 622227928 6449 3 0.0465188401302528 RFvsST 583754800 744521639 160766840 no 161.478830658434 TraesCS4A01G342400 chr4A_622221579 chr4A 622221579 A A G G 4 synonymous_variant LOW transcript non_Triplet 622221480 622227928 6449 3 0.0465188401302528 RFvsST 583754800 744521639 160766840 no 161.478830658434 TraesCS4A01G342500 chr4A_622235934 chr4A 622235934 G G C C 4 missense_variant MODERATE transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342500 chr4A_622235616 chr4A 622235616 T T A A 4 missense_variant MODERATE transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342500 chr4A_622235536 chr4A 622235536 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342500 chr4A_622236705 chr4A 622236705 T T C C 4 missense_variant MODERATE transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342500 chr4A_622236024 chr4A 622236024 G G A A 4 synonymous_variant LOW transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342500 chr4A_622237760 chr4A 622237760 C C T T 4 missense_variant MODERATE transcript unique_Triplet 622235590 622238103 2514 6 0.238663484486874 RFvsST 583754800 744521639 160766840 no 790.377144143091 TraesCS4A01G342700 chr4A_622283481 chr4A 622283481 G G A A 4 synonymous_variant LOW transcript unique_Triplet 622281851 622286914 5064 1 0.0197472353870458 RFvsST 583754800 744521639 160766840 no 159.949392492589 TraesCS4A01G342800 chr4A_622285994 chr4A 622285994 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 622288509 622290306 1798 3 0.166852057842047 RFvsST 583754800 744521639 160766840 no 575.292509194333 TraesCS4A01G342800 chr4A_622286420 chr4A 622286420 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 622288509 622290306 1798 3 0.166852057842047 RFvsST 583754800 744521639 160766840 no 575.292509194333 TraesCS4A01G342800 chr4A_622290276 chr4A 622290276 C C T T 4 missense_variant MODERATE transcript unique_Triplet 622288509 622290306 1798 3 0.166852057842047 RFvsST 583754800 744521639 160766840 no 575.292509194333 TraesCS4A01G343300 chr4A_623318121 chr4A 623318121 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 623315223 623317668 2446 3 0.122649223221586 RFvsST 583754800 744521639 160766840 no 670.259273272059 TraesCS4A01G343300 chr4A_623315285 chr4A 623315285 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 623315223 623317668 2446 3 0.122649223221586 RFvsST 583754800 744521639 160766840 no 670.259273272059 TraesCS4A01G343300 chr4A_623318198 chr4A 623318198 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 623315223 623317668 2446 3 0.122649223221586 RFvsST 583754800 744521639 160766840 no 670.259273272059 TraesCS4A01G343400 chr4A_623318228 chr4A 623318228 T T G G 4 synonymous_variant LOW transcript unique_Triplet 623318214 623321640 3427 3 0.0875401225561716 RFvsST 583754800 744521639 160766840 no 66.9397345757497 TraesCS4A01G343400 chr4A_623321551 chr4A 623321551 G G A A 4 synonymous_variant LOW transcript unique_Triplet 623318214 623321640 3427 3 0.0875401225561716 RFvsST 583754800 744521639 160766840 no 66.9397345757497 TraesCS4A01G343400 chr4A_623318310 chr4A 623318310 C C T T 4 synonymous_variant LOW transcript unique_Triplet 623318214 623321640 3427 3 0.0875401225561716 RFvsST 583754800 744521639 160766840 no 66.9397345757497 TraesCS4A01G343800 chr4A_623400085 chr4A 623400085 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 623400168 623402548 2381 2 0.0839983200335993 RFvsST 583754800 744521639 160766840 no 11.3707835571038 TraesCS4A01G343800 chr4A_623400052 chr4A 623400052 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 623400168 623402548 2381 2 0.0839983200335993 RFvsST 583754800 744521639 160766840 no 11.3707835571038 TraesCS4A01G349300 chr4A_626119447 chr4A 626119447 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 626116348 626119070 2723 5 0.183621006243114 RFvsST 583754800 744521639 160766840 no 267.665263188923 TraesCS4A01G349300 chr4A_626118544 chr4A 626118544 T T C C 4 missense_variant MODERATE transcript non_Triplet 626116348 626119070 2723 5 0.183621006243114 RFvsST 583754800 744521639 160766840 no 267.665263188923 TraesCS4A01G349300 chr4A_626118464 chr4A 626118464 A A G G 4 synonymous_variant LOW transcript non_Triplet 626116348 626119070 2723 5 0.183621006243114 RFvsST 583754800 744521639 160766840 no 267.665263188923 TraesCS4A01G349300 chr4A_626119154 chr4A 626119154 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 626116348 626119070 2723 5 0.183621006243114 RFvsST 583754800 744521639 160766840 no 267.665263188923 TraesCS4A01G349300 chr4A_626116538 chr4A 626116538 C C T T 4 missense_variant MODERATE transcript non_Triplet 626116348 626119070 2723 5 0.183621006243114 RFvsST 583754800 744521639 160766840 no 267.665263188923 TraesCS4A01G349400 chr4A_626121453 chr4A 626121453 A A G G 4 missense_variant MODERATE transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626120680 chr4A 626120680 G G A A 4 synonymous_variant LOW transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626120312 chr4A 626120312 C C G G 4 missense_variant MODERATE transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626120020 chr4A 626120020 A A G G 4 synonymous_variant LOW transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626119842 chr4A 626119842 A A T T 4 missense_variant MODERATE transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626121186 chr4A 626121186 G G A A 4 missense_variant MODERATE transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349400 chr4A_626121300 chr4A 626121300 T T C C 4 missense_variant MODERATE transcript unique_Triplet 626119519 626121612 2094 7 0.334288443170965 RFvsST 583754800 744521639 160766840 no 818.08053378004 TraesCS4A01G349800 chr4A_626321544 chr4A 626321544 C C T T 4 missense_variant MODERATE transcript non_Triplet 626307415 626329004 21590 3 0.0138953219082909 RFvsST 583754800 744521639 160766840 no 441.652845599542 TraesCS4A01G349800 chr4A_626323282 chr4A 626323282 A A G G 4 synonymous_variant LOW transcript non_Triplet 626307415 626329004 21590 3 0.0138953219082909 RFvsST 583754800 744521639 160766840 no 441.652845599542 TraesCS4A01G349800 chr4A_626322023 chr4A 626322023 T T C C 4 synonymous_variant LOW transcript non_Triplet 626307415 626329004 21590 3 0.0138953219082909 RFvsST 583754800 744521639 160766840 no 441.652845599542 TraesCS4A01G349900 chr4A_626342041 chr4A 626342041 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 626338150 626339452 1303 1 0.0767459708365311 RFvsST 583754800 744521639 160766840 no 19.3479927820778 TraesCS4A01G350000 chr4A_626346062 chr4A 626346062 A A G G 4 missense_variant MODERATE transcript unique_Triplet 626343275 626347359 4085 1 0.0244798041615667 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G351900 chr4A_627516490 chr4A 627516490 G G T T 4 missense_variant MODERATE transcript unique_Triplet 627516374 627520725 4352 1 0.0229779411764706 RFvsST 583754800 744521639 160766840 no 287.823226373948 TraesCS4A01G352100 chr4A_627772601 chr4A 627772601 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 627772558 627778668 6111 3 0.0490918016691213 RFvsST 583754800 744521639 160766840 no 138.791214397555 TraesCS4A01G352100 chr4A_627772778 chr4A 627772778 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 627772558 627778668 6111 3 0.0490918016691213 RFvsST 583754800 744521639 160766840 no 138.791214397555 TraesCS4A01G352100 chr4A_627772652 chr4A 627772652 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 627772558 627778668 6111 3 0.0490918016691213 RFvsST 583754800 744521639 160766840 no 138.791214397555 TraesCS4A01G352200 chr4A_627814043 chr4A 627814043 G G T T 4 missense_variant MODERATE transcript unique_Triplet 627813987 627816812 2826 3 0.106157112526539 RFvsST 583754800 744521639 160766840 no 55.0347047932182 TraesCS4A01G352200 chr4A_627815448 chr4A 627815448 A A G G 4 synonymous_variant LOW transcript unique_Triplet 627813987 627816812 2826 3 0.106157112526539 RFvsST 583754800 744521639 160766840 no 55.0347047932182 TraesCS4A01G352200 chr4A_627816604 chr4A 627816604 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 627813987 627816812 2826 3 0.106157112526539 RFvsST 583754800 744521639 160766840 no 55.0347047932182 TraesCS4A01G352300 chr4A_627819039 chr4A 627819039 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 627819137 627820590 1454 1 0.0687757909215956 RFvsST 583754800 744521639 160766840 no 1111.10358176267 TraesCS4A01G353000 chr4A_628209842 chr4A 628209842 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 628209897 628211052 1156 1 0.0865051903114187 RFvsST 583754800 744521639 160766840 no 172.781640640942 TraesCS4A01G353200 chr4A_628334112 chr4A 628334112 A A C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 628328995 628334366 5372 1 0.0186150409530901 RFvsST 583754800 744521639 160766840 no 79.5540481116126 TraesCS4A01G353300 chr4A_628485761 chr4A 628485761 G G T T 4 missense_variant MODERATE transcript non_Triplet 628483735 628486623 2889 5 0.17307026652821 RFvsST 583754800 744521639 160766840 no 415.803475985306 TraesCS4A01G353300 chr4A_628485892 chr4A 628485892 C C T T 4 synonymous_variant LOW transcript non_Triplet 628483735 628486623 2889 5 0.17307026652821 RFvsST 583754800 744521639 160766840 no 415.803475985306 TraesCS4A01G353300 chr4A_628486126 chr4A 628486126 C C G G 4 synonymous_variant LOW transcript non_Triplet 628483735 628486623 2889 5 0.17307026652821 RFvsST 583754800 744521639 160766840 no 415.803475985306 TraesCS4A01G353300 chr4A_628486294 chr4A 628486294 G G A A 4 synonymous_variant LOW transcript non_Triplet 628483735 628486623 2889 5 0.17307026652821 RFvsST 583754800 744521639 160766840 no 415.803475985306 TraesCS4A01G353300 chr4A_628485598 chr4A 628485598 C C A A 4 missense_variant MODERATE transcript non_Triplet 628483735 628486623 2889 5 0.17307026652821 RFvsST 583754800 744521639 160766840 no 415.803475985306 TraesCS4A01G353500 chr4A_628506219 chr4A 628506219 T T G G 4 synonymous_variant LOW transcript unique_Triplet 628503027 628506980 3954 1 0.0252908447142135 RFvsST 583754800 744521639 160766840 no 24.8697745039296 TraesCS4A01G355000 chr4A_629360157 chr4A 629360157 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629360623 629365668 5046 1 0.0198176773682124 RFvsST 583754800 744521639 160766840 no 1578.6666922405 TraesCS4A01G355600 chr4A_629469160 chr4A 629469160 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629466744 629468423 1680 1 0.0595238095238095 RFvsST 583754800 744521639 160766840 no 429.869552245775 TraesCS4A01G355700 chr4A_629476818 chr4A 629476818 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629476383 chr4A 629476383 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629475911 chr4A 629475911 T T C C 4 synonymous_variant LOW transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629476166 chr4A 629476166 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629476633 chr4A 629476633 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629471715 chr4A 629471715 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G355700 chr4A_629475930 chr4A 629475930 T T C C 4 missense_variant MODERATE transcript unique_Triplet 629474797 629475953 1157 7 0.605012964563526 RFvsST 583754800 744521639 160766840 no 205.079728293159 TraesCS4A01G356200 chr4A_629862694 chr4A 629862694 G G A A 4 missense_variant MODERATE transcript unique_Triplet 629862606 629865014 2409 2 0.08302200083022 RFvsST 583754800 744521639 160766840 no 149.161028184185 TraesCS4A01G356200 chr4A_629862797 chr4A 629862797 C C A A 4 missense_variant MODERATE transcript unique_Triplet 629862606 629865014 2409 2 0.08302200083022 RFvsST 583754800 744521639 160766840 no 149.161028184185 TraesCS4A01G356300 chr4A_629867491 chr4A 629867491 C C G G 4 synonymous_variant LOW transcript unique_Triplet 629867452 629874469 7018 1 0.0142490738102023 RFvsST 583754800 744521639 160766840 no 5.5971710894319 TraesCS4A01G356400 chr4A_629913362 chr4A 629913362 A A G G 4 missense_variant MODERATE transcript unique_Triplet 629911234 629917590 6357 3 0.047192071731949 RFvsST 583754800 744521639 160766840 no 149.771895251561 TraesCS4A01G356400 chr4A_629917368 chr4A 629917368 G G A A 4 synonymous_variant LOW transcript unique_Triplet 629911234 629917590 6357 3 0.047192071731949 RFvsST 583754800 744521639 160766840 no 149.771895251561 TraesCS4A01G356400 chr4A_629912208 chr4A 629912208 T T C C 4 missense_variant MODERATE transcript unique_Triplet 629911234 629917590 6357 3 0.047192071731949 RFvsST 583754800 744521639 160766840 no 149.771895251561 TraesCS4A01G357200 chr4A_630772391 chr4A 630772391 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 630772220 630775457 3238 1 0.0308832612723904 RFvsST 583754800 744521639 160766840 no 381.507396385779 TraesCS4A01G357300 chr4A_630845865 chr4A 630845865 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 630845980 630860277 14298 1 0.00699398517275143 RFvsST 583754800 744521639 160766840 no 28.0108336923589 TraesCS4A01G357400 chr4A_630864132 chr4A 630864132 C C T T 4 synonymous_variant LOW transcript unique_Triplet 630863780 630864288 509 1 0.196463654223969 RFvsST 583754800 744521639 160766840 no 780.636218803502 TraesCS4A01G358100 chr4A_631574982 chr4A 631574982 C C T T 4 missense_variant MODERATE transcript unique_Triplet 631566413 631576207 9795 3 0.0306278713629403 RFvsST 583754800 744521639 160766840 no 610.289621331917 TraesCS4A01G358100 chr4A_631575885 chr4A 631575885 A A T T 4 missense_variant MODERATE transcript unique_Triplet 631566413 631576207 9795 3 0.0306278713629403 RFvsST 583754800 744521639 160766840 no 610.289621331917 TraesCS4A01G358100 chr4A_631575999 chr4A 631575999 G G C C 4 missense_variant MODERATE transcript unique_Triplet 631566413 631576207 9795 3 0.0306278713629403 RFvsST 583754800 744521639 160766840 no 610.289621331917 TraesCS4A01G358200 chr4A_631578560 chr4A 631578560 G G A A 4 missense_variant MODERATE transcript unique_Triplet 631577529 631579059 1531 1 0.0653167864141084 RFvsST 583754800 744521639 160766840 no 119.868032322775 TraesCS4A01G358400 chr4A_631643382 chr4A 631643382 G G A A 4 missense_variant MODERATE transcript unique_Triplet 631642144 631645788 3645 3 0.0823045267489712 RFvsST 583754800 744521639 160766840 no 687.044817497527 TraesCS4A01G358400 chr4A_631645644 chr4A 631645644 G G T T 4 missense_variant MODERATE transcript unique_Triplet 631642144 631645788 3645 3 0.0823045267489712 RFvsST 583754800 744521639 160766840 no 687.044817497527 TraesCS4A01G358400 chr4A_631645186 chr4A 631645186 C C A A 4 intron_variant MODIFIER transcript unique_Triplet 631642144 631645788 3645 3 0.0823045267489712 RFvsST 583754800 744521639 160766840 no 687.044817497527 TraesCS4A01G359500 chr4A_632861961 chr4A 632861961 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 632858395 632864043 5649 5 0.0885112409275978 RFvsST 583754800 744521639 160766840 no 732.444136911111 TraesCS4A01G359500 chr4A_632861192 chr4A 632861192 G G C C 4 missense_variant MODERATE transcript unique_Triplet 632858395 632864043 5649 5 0.0885112409275978 RFvsST 583754800 744521639 160766840 no 732.444136911111 TraesCS4A01G359500 chr4A_632858940 chr4A 632858940 T T C C 4 synonymous_variant LOW transcript unique_Triplet 632858395 632864043 5649 5 0.0885112409275978 RFvsST 583754800 744521639 160766840 no 732.444136911111 TraesCS4A01G359500 chr4A_632858801 chr4A 632858801 G G T T 4 missense_variant MODERATE transcript unique_Triplet 632858395 632864043 5649 5 0.0885112409275978 RFvsST 583754800 744521639 160766840 no 732.444136911111 TraesCS4A01G359500 chr4A_632863142 chr4A 632863142 G G A A 4 missense_variant MODERATE transcript unique_Triplet 632858395 632864043 5649 5 0.0885112409275978 RFvsST 583754800 744521639 160766840 no 732.444136911111 TraesCS4A01G361100 chr4A_634737636 chr4A 634737636 A A G G 4 synonymous_variant LOW transcript unique_Triplet 634733450 634738598 5149 2 0.0388424936880948 RFvsST 583754800 744521639 160766840 no 105.441798640851 TraesCS4A01G361100 chr4A_634736497 chr4A 634736497 G G T T 4 missense_variant MODERATE transcript unique_Triplet 634733450 634738598 5149 2 0.0388424936880948 RFvsST 583754800 744521639 160766840 no 105.441798640851 TraesCS4A01G361900 chr4A_635928019 chr4A 635928019 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 635928026 635934065 6040 2 0.033112582781457 RFvsST 583754800 744521639 160766840 no 18.3527962509299 TraesCS4A01G361900 chr4A_635930864 chr4A 635930864 G G A A 4 synonymous_variant LOW transcript unique_Triplet 635928026 635934065 6040 2 0.033112582781457 RFvsST 583754800 744521639 160766840 no 18.3527962509299 TraesCS4A01G363700 chr4A_636684714 chr4A 636684714 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 636677630 636680816 3187 3 0.094132412927518 RFvsST 583754800 744521639 160766840 no 1980.76245999066 TraesCS4A01G363700 chr4A_636677567 chr4A 636677567 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 636677630 636680816 3187 3 0.094132412927518 RFvsST 583754800 744521639 160766840 no 1980.76245999066 TraesCS4A01G363700 chr4A_636684607 chr4A 636684607 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 636677630 636680816 3187 3 0.094132412927518 RFvsST 583754800 744521639 160766840 no 1980.76245999066 TraesCS4A01G363800 chr4A_636685363 chr4A 636685363 G G A A 4 synonymous_variant LOW transcript non_Triplet 636684721 636687792 3072 2 0.0651041666666667 RFvsST 583754800 744521639 160766840 no 916.60207281166 TraesCS4A01G363800 chr4A_636684736 chr4A 636684736 G G A A 4 synonymous_variant LOW transcript non_Triplet 636684721 636687792 3072 2 0.0651041666666667 RFvsST 583754800 744521639 160766840 no 916.60207281166 TraesCS4A01G364700 chr4A_637966213 chr4A 637966213 T T C C 4 synonymous_variant LOW transcript unique_Triplet 637965988 637966751 764 3 0.392670157068063 RFvsST 583754800 744521639 160766840 no 41.3575327747424 TraesCS4A01G364700 chr4A_637966878 chr4A 637966878 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 637965988 637966751 764 3 0.392670157068063 RFvsST 583754800 744521639 160766840 no 41.3575327747424 TraesCS4A01G364700 chr4A_637966288 chr4A 637966288 C C T T 4 synonymous_variant LOW transcript unique_Triplet 637965988 637966751 764 3 0.392670157068063 RFvsST 583754800 744521639 160766840 no 41.3575327747424 TraesCS4A01G364900 chr4A_638217287 chr4A 638217287 T T G G 4 missense_variant MODERATE transcript unique_Triplet 638213514 638218791 5278 2 0.0378931413414172 RFvsST 583754800 744521639 160766840 no 78.0406518711015 TraesCS4A01G364900 chr4A_638218437 chr4A 638218437 G G C C 4 missense_variant MODERATE transcript unique_Triplet 638213514 638218791 5278 2 0.0378931413414172 RFvsST 583754800 744521639 160766840 no 78.0406518711015 TraesCS4A01G365200 chr4A_638796569 chr4A 638796569 A A G G 4 synonymous_variant LOW transcript unique_Triplet 638791957 638796803 4847 2 0.041262636682484 RFvsST 583754800 744521639 160766840 no 52.4179361629102 TraesCS4A01G365200 chr4A_638794931 chr4A 638794931 T T A A 4 synonymous_variant LOW transcript unique_Triplet 638791957 638796803 4847 2 0.041262636682484 RFvsST 583754800 744521639 160766840 no 52.4179361629102 TraesCS4A01G366200 chr4A_639208998 chr4A 639208998 G G T T 4 missense_variant MODERATE transcript unique_Triplet 639205670 639209134 3465 2 0.0577200577200577 RFvsST 583754800 744521639 160766840 no 45.0031490443609 TraesCS4A01G366200 chr4A_639205835 chr4A 639205835 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 639205670 639209134 3465 2 0.0577200577200577 RFvsST 583754800 744521639 160766840 no 45.0031490443609 TraesCS4A01G367200 chr4A_640216041 chr4A 640216041 A A G G 4 missense_variant MODERATE transcript unique_Triplet 640212737 640216328 3592 1 0.0278396436525612 RFvsST 583754800 744521639 160766840 no 186.386506308152 TraesCS4A01G368700 chr4A_641402910 chr4A 641402910 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 641400899 641401733 835 1 0.119760479041916 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G369500 chr4A_641504722 chr4A 641504722 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 641504512 641508088 3577 1 0.0279563880346659 RFvsST 583754800 744521639 160766840 no 825.857464844494 TraesCS4A01G369600 chr4A_641504397 chr4A 641504397 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 641507108 641508163 1056 3 0.284090909090909 RFvsST 583754800 744521639 160766840 no 214.618298335015 TraesCS4A01G369600 chr4A_641508011 chr4A 641508011 A A G G 4 missense_variant MODERATE transcript non_Triplet 641507108 641508163 1056 3 0.284090909090909 RFvsST 583754800 744521639 160766840 no 214.618298335015 TraesCS4A01G369600 chr4A_641508056 chr4A 641508056 A A G G 4 missense_variant MODERATE transcript non_Triplet 641507108 641508163 1056 3 0.284090909090909 RFvsST 583754800 744521639 160766840 no 214.618298335015 TraesCS4A01G377500 chr4A_652857001 chr4A 652857001 C C G G 4 missense_variant MODERATE transcript non_Triplet 652849610 652857706 8097 1 0.0123502531801902 RFvsST 583754800 744521639 160766840 no 3.0055389474211 TraesCS4A01G382700 chr4A_660792709 chr4A 660792709 G G A A 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660793299 chr4A 660793299 T T A A 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660792899 chr4A 660792899 G G T T 4 missense_variant MODERATE transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660791232 chr4A 660791232 C C T T 4 missense_variant MODERATE transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660792529 chr4A 660792529 A A G G 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660791626 chr4A 660791626 C C T T 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660791047 chr4A 660791047 A A T T 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660791311 chr4A 660791311 T T C C 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660790936 chr4A 660790936 G G A A 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660794576 chr4A 660794576 T T C C 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660790990 chr4A 660790990 T T C C 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382700 chr4A_660792751 chr4A 660792751 G G A A 4 synonymous_variant LOW transcript non_Triplet 660790443 660795818 5376 12 0.223214285714286 RFvsST 583754800 744521639 160766840 no 209.566223891007 TraesCS4A01G382900 chr4A_660920362 chr4A 660920362 T T A A 4 synonymous_variant LOW transcript non_Triplet 660916378 660922098 5721 3 0.0524383848977451 RFvsST 583754800 744521639 160766840 no 297.985625320711 TraesCS4A01G382900 chr4A_660918757 chr4A 660918757 A A G G 4 synonymous_variant LOW transcript non_Triplet 660916378 660922098 5721 3 0.0524383848977451 RFvsST 583754800 744521639 160766840 no 297.985625320711 TraesCS4A01G382900 chr4A_660920371 chr4A 660920371 G G A A 4 synonymous_variant LOW transcript non_Triplet 660916378 660922098 5721 3 0.0524383848977451 RFvsST 583754800 744521639 160766840 no 297.985625320711 TraesCS4A01G384100 chr4A_661974233 chr4A 661974233 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 661969538 661969870 333 1 0.3003003003003 RFvsST 583754800 744521639 160766840 no 4.08042365904754 TraesCS4A01G384200 chr4A_661973949 chr4A 661973949 C C T T 4 synonymous_variant LOW transcript non_Triplet 661973722 661974054 333 3 0.900900900900901 RFvsST 583754800 744521639 160766840 no 135.919008426729 TraesCS4A01G384200 chr4A_661973819 chr4A 661973819 C C A A 4 missense_variant MODERATE transcript non_Triplet 661973722 661974054 333 3 0.900900900900901 RFvsST 583754800 744521639 160766840 no 135.919008426729 TraesCS4A01G384200 chr4A_661973790 chr4A 661973790 A A G G 4 synonymous_variant LOW transcript non_Triplet 661973722 661974054 333 3 0.900900900900901 RFvsST 583754800 744521639 160766840 no 135.919008426729 TraesCS4A01G384800 chr4A_662285684 chr4A 662285684 G G C C 4 missense_variant MODERATE transcript non_Triplet 662278609 662291897 13289 2 0.0150500413876138 RFvsST 583754800 744521639 160766840 no 162.719458856871 TraesCS4A01G384800 chr4A_662284608 chr4A 662284608 A A G G 4 missense_variant MODERATE transcript non_Triplet 662278609 662291897 13289 2 0.0150500413876138 RFvsST 583754800 744521639 160766840 no 162.719458856871 TraesCS4A01G386200 chr4A_663283158 chr4A 663283158 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 663284411 663290346 5936 1 0.0168463611859838 RFvsST 583754800 744521639 160766840 no 57.8833509125874 TraesCS4A01G386400 chr4A_663987330 chr4A 663987330 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 663986138 663987046 909 3 0.33003300330033 RFvsST 583754800 744521639 160766840 no 195.030634178787 TraesCS4A01G386400 chr4A_663986474 chr4A 663986474 A A T T 4 intron_variant MODIFIER transcript non_Triplet 663986138 663987046 909 3 0.33003300330033 RFvsST 583754800 744521639 160766840 no 195.030634178787 TraesCS4A01G386400 chr4A_663986612 chr4A 663986612 A A T T 4 intron_variant MODIFIER transcript non_Triplet 663986138 663987046 909 3 0.33003300330033 RFvsST 583754800 744521639 160766840 no 195.030634178787 TraesCS4A01G386500 chr4A_664153673 chr4A 664153673 T T C C 4 missense_variant MODERATE transcript non_Triplet 664153087 664154299 1213 1 0.0824402308326463 RFvsST 583754800 744521639 160766840 no 776.150984181588 TraesCS4A01G387700 chr4A_665501156 chr4A 665501156 G G T T 4 missense_variant MODERATE transcript non_Triplet 665501063 665504247 3185 4 0.125588697017268 RFvsST 583754800 744521639 160766840 no 348.284168057602 TraesCS4A01G387700 chr4A_665504597 chr4A 665504597 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 665501063 665504247 3185 4 0.125588697017268 RFvsST 583754800 744521639 160766840 no 348.284168057602 TraesCS4A01G387700 chr4A_665504629 chr4A 665504629 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 665501063 665504247 3185 4 0.125588697017268 RFvsST 583754800 744521639 160766840 no 348.284168057602 TraesCS4A01G387700 chr4A_665504205 chr4A 665504205 T T C C 4 synonymous_variant LOW transcript non_Triplet 665501063 665504247 3185 4 0.125588697017268 RFvsST 583754800 744521639 160766840 no 348.284168057602 TraesCS4A01G387900 chr4A_665606178 chr4A 665606178 A A G G 4 synonymous_variant LOW transcript non_Triplet 665606121 665609275 3155 2 0.063391442155309 RFvsST 583754800 744521639 160766840 no 394.647311322233 TraesCS4A01G387900 chr4A_665606298 chr4A 665606298 G G A A 4 synonymous_variant LOW transcript non_Triplet 665606121 665609275 3155 2 0.063391442155309 RFvsST 583754800 744521639 160766840 no 394.647311322233 TraesCS4A01G388200 chr4A_665864618 chr4A 665864618 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 665864982 665873428 8447 1 0.0118385225523855 RFvsST 583754800 744521639 160766840 no 101.74772508663 TraesCS4A01G388600 chr4A_666149052 chr4A 666149052 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 666149057 666151389 2333 1 0.042863266180883 RFvsST 583754800 744521639 160766840 no 31.5351570947592 TraesCS4A01G389600 chr4A_666979614 chr4A 666979614 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 666980143 666983528 3386 2 0.0590667454223272 RFvsST 583754800 744521639 160766840 no 45.6602025040924 TraesCS4A01G389600 chr4A_666979666 chr4A 666979666 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 666980143 666983528 3386 2 0.0590667454223272 RFvsST 583754800 744521639 160766840 no 45.6602025040924 TraesCS4A01G389900 chr4A_667174928 chr4A 667174928 A A G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 667174307 667174986 680 3 0.441176470588235 RFvsST 583754800 744521639 160766840 no 476.550133672786 TraesCS4A01G389900 chr4A_667174774 chr4A 667174774 A A G G 4 synonymous_variant LOW transcript non_Triplet 667174307 667174986 680 3 0.441176470588235 RFvsST 583754800 744521639 160766840 no 476.550133672786 TraesCS4A01G389900 chr4A_667174924 chr4A 667174924 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 667174307 667174986 680 3 0.441176470588235 RFvsST 583754800 744521639 160766840 no 476.550133672786 TraesCS4A01G390100 chr4A_667331371 chr4A 667331371 G G C C 4 synonymous_variant LOW transcript non_Triplet 667330849 667331742 894 1 0.111856823266219 RFvsST 583754800 744521639 160766840 no 44.7333905426508 TraesCS4A01G390200 chr4A_667348142 chr4A 667348142 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 667344888 667346497 1610 1 0.062111801242236 RFvsST 583754800 744521639 160766840 no 109.176829555411 TraesCS4A01G390300 chr4A_667346316 chr4A 667346316 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390300 chr4A_667346243 chr4A 667346243 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390300 chr4A_667346280 chr4A 667346280 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390300 chr4A_667350297 chr4A 667350297 G G A A 4 synonymous_variant LOW transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390300 chr4A_667346244 chr4A 667346244 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390300 chr4A_667350036 chr4A 667350036 G G A A 4 synonymous_variant LOW transcript non_Triplet 667349594 667351134 1541 6 0.389357560025957 RFvsST 583754800 744521639 160766840 no 13.185095940089 TraesCS4A01G390800 chr4A_667854914 chr4A 667854914 G G A A 4 synonymous_variant LOW transcript non_Triplet 667852919 667855180 2262 1 0.0442086648983201 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G390900 chr4A_667855278 chr4A 667855278 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 667856077 667857450 1374 1 0.0727802037845706 RFvsST 583754800 744521639 160766840 no 20.401792777049 TraesCS4A01G391000 chr4A_667860392 chr4A 667860392 G G A A 4 synonymous_variant LOW transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667861273 chr4A 667861273 T T C C 4 missense_variant MODERATE transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667859058 chr4A 667859058 G G C C 4 missense_variant MODERATE transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667859240 chr4A 667859240 C C A A 4 missense_variant MODERATE transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667859971 chr4A 667859971 T T C C 4 synonymous_variant LOW transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667859275 chr4A 667859275 G G A A 4 synonymous_variant LOW transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667859236 chr4A 667859236 T T G G 4 synonymous_variant LOW transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667861152 chr4A 667861152 G G A A 4 synonymous_variant LOW transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391000 chr4A_667858928 chr4A 667858928 A A G G 4 missense_variant MODERATE transcript non_Triplet 667858921 667862879 3959 9 0.22733013387219 RFvsST 583754800 744521639 160766840 no 316.432308805488 TraesCS4A01G391600 chr4A_668161975 chr4A 668161975 A A G G 4 missense_variant MODERATE transcript non_Triplet 668160224 668162728 2505 1 0.0399201596806387 RFvsST 583754800 744521639 160766840 no 140.653410292373 TraesCS4A01G393500 chr4A_669239476 chr4A 669239476 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 669239369 669240881 1513 1 0.0660938532716457 RFvsST 583754800 744521639 160766840 no 448.008398768869 TraesCS4A01G393600 chr4A_669320126 chr4A 669320126 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 669316246 669319924 3679 2 0.0543625985322098 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G393600 chr4A_669320115 chr4A 669320115 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 669316246 669319924 3679 2 0.0543625985322098 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G394400 chr4A_669673842 chr4A 669673842 C C T T 4 synonymous_variant LOW transcript non_Triplet 669672899 669673851 953 4 0.419727177334732 RFvsST 583754800 744521639 160766840 no 30.176071942725 TraesCS4A01G394400 chr4A_669673504 chr4A 669673504 T T C C 4 synonymous_variant LOW transcript non_Triplet 669672899 669673851 953 4 0.419727177334732 RFvsST 583754800 744521639 160766840 no 30.176071942725 TraesCS4A01G394400 chr4A_669673847 chr4A 669673847 A A G G 4 missense_variant MODERATE transcript non_Triplet 669672899 669673851 953 4 0.419727177334732 RFvsST 583754800 744521639 160766840 no 30.176071942725 TraesCS4A01G394400 chr4A_669673051 chr4A 669673051 C C A A 4 synonymous_variant LOW transcript non_Triplet 669672899 669673851 953 4 0.419727177334732 RFvsST 583754800 744521639 160766840 no 30.176071942725 TraesCS4A01G394500 chr4A_669673889 chr4A 669673889 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669680202 chr4A 669680202 G G C C 4 missense_variant MODERATE transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669680304 chr4A 669680304 T T C C 4 synonymous_variant LOW transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669680476 chr4A 669680476 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669673957 chr4A 669673957 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669680310 chr4A 669680310 C C T T 4 synonymous_variant LOW transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G394500 chr4A_669680166 chr4A 669680166 C C T T 4 synonymous_variant LOW transcript non_Triplet 669677395 669680376 2982 7 0.234741784037559 RFvsST 583754800 744521639 160766840 no 46.7376022597245 TraesCS4A01G395800 chr4A_670938693 chr4A 670938693 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 670942190 670943807 1618 1 0.0618046971569839 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G396700 chr4A_671926041 chr4A 671926041 C C G G 4 missense_variant MODERATE transcript non_Triplet 671924283 671926048 1766 5 0.28312570781427 RFvsST 583754800 744521639 160766840 no 113.388141662716 TraesCS4A01G396700 chr4A_671923103 chr4A 671923103 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 671924283 671926048 1766 5 0.28312570781427 RFvsST 583754800 744521639 160766840 no 113.388141662716 TraesCS4A01G396700 chr4A_671923145 chr4A 671923145 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 671924283 671926048 1766 5 0.28312570781427 RFvsST 583754800 744521639 160766840 no 113.388141662716 TraesCS4A01G396700 chr4A_671923049 chr4A 671923049 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 671924283 671926048 1766 5 0.28312570781427 RFvsST 583754800 744521639 160766840 no 113.388141662716 TraesCS4A01G396700 chr4A_671924074 chr4A 671924074 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 671924283 671926048 1766 5 0.28312570781427 RFvsST 583754800 744521639 160766840 no 113.388141662716 TraesCS4A01G396800 chr4A_671934139 chr4A 671934139 G G C C 4 missense_variant MODERATE transcript non_Triplet 671932237 671936050 3814 2 0.0524383848977451 RFvsST 583754800 744521639 160766840 no 15.3498769398623 TraesCS4A01G396800 chr4A_671932084 chr4A 671932084 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 671932237 671936050 3814 2 0.0524383848977451 RFvsST 583754800 744521639 160766840 no 15.3498769398623 TraesCS4A01G398300 chr4A_673412131 chr4A 673412131 G G A A 4 missense_variant MODERATE transcript non_Triplet 673411681 673413933 2253 4 0.177541056369285 RFvsST 583754800 744521639 160766840 no 48.7803518015342 TraesCS4A01G398300 chr4A_673413485 chr4A 673413485 T T C C 4 missense_variant MODERATE transcript non_Triplet 673411681 673413933 2253 4 0.177541056369285 RFvsST 583754800 744521639 160766840 no 48.7803518015342 TraesCS4A01G398300 chr4A_673412164 chr4A 673412164 G G C C 4 missense_variant MODERATE transcript non_Triplet 673411681 673413933 2253 4 0.177541056369285 RFvsST 583754800 744521639 160766840 no 48.7803518015342 TraesCS4A01G398300 chr4A_673413486 chr4A 673413486 G G C C 4 missense_variant MODERATE transcript non_Triplet 673411681 673413933 2253 4 0.177541056369285 RFvsST 583754800 744521639 160766840 no 48.7803518015342 TraesCS4A01G398400 chr4A_673446735 chr4A 673446735 T T G G 4 synonymous_variant LOW transcript non_Triplet 673443226 673451112 7887 1 0.0126790921770001 RFvsST 583754800 744521639 160766840 no 41.8431594576427 TraesCS4A01G398700 chr4A_673716634 chr4A 673716634 G G A A 4 synonymous_variant LOW transcript non_Triplet 673716503 673718494 1992 1 0.0502008032128514 RFvsST 583754800 744521639 160766840 no 581.829668635307 TraesCS4A01G399300 chr4A_673965730 chr4A 673965730 C C A A 4 missense_variant MODERATE transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399300 chr4A_673965688 chr4A 673965688 G G C C 4 missense_variant MODERATE transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399300 chr4A_673965631 chr4A 673965631 A A G G 4 synonymous_variant LOW transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399300 chr4A_673965949 chr4A 673965949 G G C C 4 synonymous_variant LOW transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399300 chr4A_673965553 chr4A 673965553 T T C C 4 synonymous_variant LOW transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399300 chr4A_673965595 chr4A 673965595 C C T T 4 synonymous_variant LOW transcript non_Triplet 673965529 673966948 1420 6 0.422535211267606 RFvsST 583754800 744521639 160766840 no 262.303604477819 TraesCS4A01G399400 chr4A_673978645 chr4A 673978645 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 673975178 673977318 2141 1 0.0467071461933676 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G399500 chr4A_673979221 chr4A 673979221 T T C C 4 synonymous_variant LOW transcript non_Triplet 673978690 673979811 1122 2 0.17825311942959 RFvsST 583754800 744521639 160766840 no 12.4036044496076 TraesCS4A01G399500 chr4A_673978791 chr4A 673978791 T T C C 4 missense_variant MODERATE transcript non_Triplet 673978690 673979811 1122 2 0.17825311942959 RFvsST 583754800 744521639 160766840 no 12.4036044496076 TraesCS4A01G400200 chr4A_674604577 chr4A 674604577 T T C C 4 synonymous_variant LOW transcript non_Triplet 674601958 674604670 2713 1 0.0368595650571323 RFvsST 583754800 744521639 160766840 no 10.5688331045154 TraesCS4A01G401700 chr4A_675600879 chr4A 675600879 T T G G 4 missense_variant MODERATE transcript non_Triplet 675600634 675602969 2336 1 0.0428082191780822 RFvsST 583754800 744521639 160766840 no 156.439549886793 TraesCS4A01G401800 chr4A_675800872 chr4A 675800872 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 675796070 675801940 5871 4 0.0681314937830012 RFvsST 583754800 744521639 160766840 no 233.799131062825 TraesCS4A01G401800 chr4A_675800581 chr4A 675800581 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 675796070 675801940 5871 4 0.0681314937830012 RFvsST 583754800 744521639 160766840 no 233.799131062825 TraesCS4A01G401800 chr4A_675801142 chr4A 675801142 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 675796070 675801940 5871 4 0.0681314937830012 RFvsST 583754800 744521639 160766840 no 233.799131062825 TraesCS4A01G401800 chr4A_675801038 chr4A 675801038 A A T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 675796070 675801940 5871 4 0.0681314937830012 RFvsST 583754800 744521639 160766840 no 233.799131062825 TraesCS4A01G402500 chr4A_675969896 chr4A 675969896 A A G G 4 missense_variant MODERATE transcript non_Triplet 675967409 675970011 2603 2 0.0768344218209758 RFvsST 583754800 744521639 160766840 no 232.719724866008 TraesCS4A01G402500 chr4A_675967537 chr4A 675967537 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 675967409 675970011 2603 2 0.0768344218209758 RFvsST 583754800 744521639 160766840 no 232.719724866008 TraesCS4A01G404500 chr4A_678129416 chr4A 678129416 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 678127175 678131168 3994 1 0.0250375563345017 RFvsST 583754800 744521639 160766840 no 229.464521593276 TraesCS4A01G405900 chr4A_679068928 chr4A 679068928 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 679068644 679069153 510 1 0.196078431372549 RFvsST 583754800 744521639 160766840 no 174.374145357859 TraesCS4A01G408000 chr4A_680587432 chr4A 680587432 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 680585695 680590244 4550 1 0.021978021978022 RFvsST 583754800 744521639 160766840 no 96.4355773942248 TraesCS4A01G408900 chr4A_681670895 chr4A 681670895 G G A A 4 synonymous_variant LOW transcript unique_Triplet 681662107 681680744 18638 1 0.00536538255177594 RFvsST 583754800 744521639 160766840 no 31.1887664555641 TraesCS4A01G410800 chr4A_683616509 chr4A 683616509 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 683616676 683618332 1657 2 0.12070006035003 RFvsST 583754800 744521639 160766840 no 5982.41755538126 TraesCS4A01G410800 chr4A_683616561 chr4A 683616561 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 683616676 683618332 1657 2 0.12070006035003 RFvsST 583754800 744521639 160766840 no 5982.41755538126 TraesCS4A01G411600 chr4A_683882629 chr4A 683882629 C C T T 4 synonymous_variant LOW transcript unique_Triplet 683877561 683899104 21544 2 0.00928332714444857 RFvsST 583754800 744521639 160766840 no 33.8682468792452 TraesCS4A01G411600 chr4A_683876073 chr4A 683876073 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 683877561 683899104 21544 2 0.00928332714444857 RFvsST 583754800 744521639 160766840 no 33.8682468792452 TraesCS4A01G412400 chr4A_684272139 chr4A 684272139 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 684266593 684267665 1073 2 0.186393289841566 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G412400 chr4A_684269297 chr4A 684269297 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 684266593 684267665 1073 2 0.186393289841566 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G412500 chr4A_684270444 chr4A 684270444 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 684269457 684271353 1897 1 0.0527148128624143 RFvsST 583754800 744521639 160766840 no 1184.56656748567 TraesCS4A01G413300 chr4A_684584361 chr4A 684584361 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 684584130 684589386 5257 1 0.0190222560395663 RFvsST 583754800 744521639 160766840 no 253.136438008639 TraesCS4A01G413700 chr4A_684616367 chr4A 684616367 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 684611351 684611656 306 1 0.326797385620915 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G413900 chr4A_684616499 chr4A 684616499 T T C C 4 synonymous_variant LOW transcript unique_Triplet 684616403 684619517 3115 2 0.0642054574638844 RFvsST 583754800 744521639 160766840 no 111.765810657717 TraesCS4A01G413900 chr4A_684616739 chr4A 684616739 T T C C 4 synonymous_variant LOW transcript unique_Triplet 684616403 684619517 3115 2 0.0642054574638844 RFvsST 583754800 744521639 160766840 no 111.765810657717 TraesCS4A01G414700 chr4A_684967029 chr4A 684967029 A A G G 4 missense_variant MODERATE transcript unique_Triplet 684965195 684968394 3200 1 0.03125 RFvsST 583754800 744521639 160766840 no 97.1481327071772 TraesCS4A01G416800 chr4A_686380511 chr4A 686380511 G G A A 4 missense_variant MODERATE transcript unique_Triplet 686375921 686384016 8096 1 0.0123517786561265 RFvsST 583754800 744521639 160766840 no 192.459869017911 TraesCS4A01G417300 chr4A_687312977 chr4A 687312977 T T C C 4 synonymous_variant LOW transcript non_Triplet 687312230 687314715 2486 1 0.0402252614641995 RFvsST 583754800 744521639 160766840 no 35.1439748566012 TraesCS4A01G418100 chr4A_688095905 chr4A 688095905 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 688092065 688095665 3601 2 0.0555401277422938 RFvsST 583754800 744521639 160766840 no 194.713067858804 TraesCS4A01G418100 chr4A_688094095 chr4A 688094095 C C T T 4 synonymous_variant LOW transcript non_Triplet 688092065 688095665 3601 2 0.0555401277422938 RFvsST 583754800 744521639 160766840 no 194.713067858804 TraesCS4A01G419400 chr4A_689849693 chr4A 689849693 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689849795 chr4A 689849795 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689849604 chr4A 689849604 C C T T 4 synonymous_variant LOW transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689846934 chr4A 689846934 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689848077 chr4A 689848077 C C T T 4 synonymous_variant LOW transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689849354 chr4A 689849354 G G C C 4 missense_variant MODERATE transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G419400 chr4A_689846953 chr4A 689846953 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 689847478 689849619 2142 7 0.326797385620915 RFvsST 583754800 744521639 160766840 no 669.59330954584 TraesCS4A01G420600 chr4A_691124514 chr4A 691124514 T T G G 4 synonymous_variant LOW transcript non_Triplet 691123920 691125062 1143 4 0.349956255468067 RFvsST 583754800 744521639 160766840 no 677.137086030906 TraesCS4A01G420600 chr4A_691125062 chr4A 691125062 A A T T 4 splice_region_variant LOW transcript non_Triplet 691123920 691125062 1143 4 0.349956255468067 RFvsST 583754800 744521639 160766840 no 677.137086030906 TraesCS4A01G420600 chr4A_691124040 chr4A 691124040 C C G G 4 synonymous_variant LOW transcript non_Triplet 691123920 691125062 1143 4 0.349956255468067 RFvsST 583754800 744521639 160766840 no 677.137086030906 TraesCS4A01G420600 chr4A_691124019 chr4A 691124019 C C G G 4 synonymous_variant LOW transcript non_Triplet 691123920 691125062 1143 4 0.349956255468067 RFvsST 583754800 744521639 160766840 no 677.137086030906 TraesCS4A01G421900 chr4A_692359054 chr4A 692359054 A A C C 4 synonymous_variant LOW transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G421900 chr4A_692358889 chr4A 692358889 T T C C 4 synonymous_variant LOW transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G421900 chr4A_692359495 chr4A 692359495 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G421900 chr4A_692359553 chr4A 692359553 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G421900 chr4A_692359045 chr4A 692359045 G G C C 4 synonymous_variant LOW transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G421900 chr4A_692358898 chr4A 692358898 C C G G 4 synonymous_variant LOW transcript non_Triplet 692358851 692359360 510 6 1.17647058823529 RFvsST 583754800 744521639 160766840 no 47.0706442498663 TraesCS4A01G422100 chr4A_692386027 chr4A 692386027 C C T T 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 692383021 692386045 3025 1 0.0330578512396694 RFvsST 583754800 744521639 160766840 no 187.591645912215 TraesCS4A01G422400 chr4A_692546067 chr4A 692546067 G G T T 4 missense_variant MODERATE transcript non_Triplet 692546017 692551647 5631 1 0.0177588350204227 RFvsST 583754800 744521639 160766840 no 101.730946591026 TraesCS4A01G422700 chr4A_692960260 chr4A 692960260 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692955633 chr4A 692955633 A A G G 4 synonymous_variant LOW transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692959730 chr4A 692959730 T T C C 4 synonymous_variant LOW transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692958237 chr4A 692958237 A A C C 4 missense_variant MODERATE transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692958315 chr4A 692958315 C C T T 4 missense_variant MODERATE transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692955469 chr4A 692955469 G G A A 4 missense_variant MODERATE transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422700 chr4A_692957449 chr4A 692957449 T T C C 4 missense_variant MODERATE transcript non_Triplet 692953459 692959802 6344 7 0.110340479192938 RFvsST 583754800 744521639 160766840 no 111.163123454197 TraesCS4A01G422900 chr4A_693277464 chr4A 693277464 T T C C 4 synonymous_variant LOW transcript non_Triplet 693274790 693278073 3284 2 0.0609013398294762 RFvsST 583754800 744521639 160766840 no 538.424736388486 TraesCS4A01G422900 chr4A_693277415 chr4A 693277415 A A G G 4 missense_variant MODERATE transcript non_Triplet 693274790 693278073 3284 2 0.0609013398294762 RFvsST 583754800 744521639 160766840 no 538.424736388486 TraesCS4A01G423000 chr4A_693280325 chr4A 693280325 C C T T 4 synonymous_variant LOW transcript non_Triplet 693279815 693280424 610 2 0.327868852459016 RFvsST 583754800 744521639 160766840 no 73.6911250384709 TraesCS4A01G423000 chr4A_693278307 chr4A 693278307 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 693279815 693280424 610 2 0.327868852459016 RFvsST 583754800 744521639 160766840 no 73.6911250384709 TraesCS4A01G425000 chr4A_696005293 chr4A 696005293 A A G G 4 synonymous_variant LOW transcript non_Triplet 696005186 696006398 1213 1 0.0824402308326463 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G425300 chr4A_697386523 chr4A 697386523 G G A A 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697388992 chr4A 697388992 A A C C 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697388985 chr4A 697388985 C C T T 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697387656 chr4A 697387656 C C T T 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697387293 chr4A 697387293 G G A A 4 missense_variant MODERATE transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697387263 chr4A 697387263 C C T T 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697387151 chr4A 697387151 A A G G 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697387430 chr4A 697387430 C C T T 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697386529 chr4A 697386529 T T C C 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697389261 chr4A 697389261 A A C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G425300 chr4A_697388695 chr4A 697388695 C C T T 4 synonymous_variant LOW transcript non_Triplet 697382833 697390065 7233 11 0.152080741047975 RFvsST 583754800 744521639 160766840 no 142.685970388755 TraesCS4A01G426200 chr4A_697944819 chr4A 697944819 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 697947253 697949084 1832 1 0.0545851528384279 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G427500 chr4A_698428064 chr4A 698428064 G G T T 4 missense_variant MODERATE transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698431550 chr4A 698431550 C C T T 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698431833 chr4A 698431833 C C T T 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698432504 chr4A 698432504 C C A A 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427508 chr4A 698427508 T T C C 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427726 chr4A 698427726 C C G G 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427843 chr4A 698427843 A A C C 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427287 chr4A 698427287 C C G G 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427517 chr4A 698427517 C C G G 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427574 chr4A 698427574 C C A A 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G427500 chr4A_698427302 chr4A 698427302 C C G G 4 synonymous_variant LOW transcript non_Triplet 698426815 698432810 5996 11 0.183455637091394 RFvsST 583754800 744521639 160766840 no 26.6189924541164 TraesCS4A01G428600 chr4A_699795392 chr4A 699795392 G G A A 4 synonymous_variant LOW transcript non_Triplet 699793967 699796519 2553 1 0.0391696043869957 RFvsST 583754800 744521639 160766840 no 13.1769130209723 TraesCS4A01G428700 chr4A_699885281 chr4A 699885281 G G A A 4 synonymous_variant LOW transcript non_Triplet 699884052 699885371 1320 2 0.151515151515152 RFvsST 583754800 744521639 160766840 no 133.270321353479 TraesCS4A01G428700 chr4A_699884519 chr4A 699884519 C C T T 4 synonymous_variant LOW transcript non_Triplet 699884052 699885371 1320 2 0.151515151515152 RFvsST 583754800 744521639 160766840 no 133.270321353479 TraesCS4A01G429400 chr4A_700422179 chr4A 700422179 C C T T 4 missense_variant MODERATE transcript non_Triplet 700417779 700422201 4423 1 0.0226090888537192 RFvsST 583754800 744521639 160766840 no 83.0459321005431 TraesCS4A01G431200 chr4A_702044279 chr4A 702044279 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 702038328 702039507 1180 1 0.0847457627118644 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G431300 chr4A_702046155 chr4A 702046155 G G T T 4 synonymous_variant LOW transcript non_Triplet 702044351 702046457 2107 1 0.0474608448030375 RFvsST 583754800 744521639 160766840 no 1150.45630522873 TraesCS4A01G432300 chr4A_703269154 chr4A 703269154 A A G G 4 missense_variant MODERATE transcript non_Triplet 703268559 703270798 2240 2 0.0892857142857143 RFvsST 583754800 744521639 160766840 no 144.444815071037 TraesCS4A01G432300 chr4A_703269197 chr4A 703269197 C C A A 4 missense_variant MODERATE transcript non_Triplet 703268559 703270798 2240 2 0.0892857142857143 RFvsST 583754800 744521639 160766840 no 144.444815071037 TraesCS4A01G432400 chr4A_703340979 chr4A 703340979 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 703336757 703340732 3976 2 0.0503018108651912 RFvsST 583754800 744521639 160766840 no 56.2427240265911 TraesCS4A01G432400 chr4A_703338884 chr4A 703338884 G G A A 4 synonymous_variant LOW transcript non_Triplet 703336757 703340732 3976 2 0.0503018108651912 RFvsST 583754800 744521639 160766840 no 56.2427240265911 TraesCS4A01G434000 chr4A_704796465 chr4A 704796465 A A G G 4 synonymous_variant LOW transcript non_Triplet 704795701 704797806 2106 5 0.237416904083571 RFvsST 583754800 744521639 160766840 no 52.6822078887169 TraesCS4A01G434000 chr4A_704797188 chr4A 704797188 A A G G 4 missense_variant MODERATE transcript non_Triplet 704795701 704797806 2106 5 0.237416904083571 RFvsST 583754800 744521639 160766840 no 52.6822078887169 TraesCS4A01G434000 chr4A_704797281 chr4A 704797281 T T C C 4 missense_variant MODERATE transcript non_Triplet 704795701 704797806 2106 5 0.237416904083571 RFvsST 583754800 744521639 160766840 no 52.6822078887169 TraesCS4A01G434000 chr4A_704796426 chr4A 704796426 A A T T 4 synonymous_variant LOW transcript non_Triplet 704795701 704797806 2106 5 0.237416904083571 RFvsST 583754800 744521639 160766840 no 52.6822078887169 TraesCS4A01G434000 chr4A_704797057 chr4A 704797057 C C T T 4 synonymous_variant LOW transcript non_Triplet 704795701 704797806 2106 5 0.237416904083571 RFvsST 583754800 744521639 160766840 no 52.6822078887169 TraesCS4A01G434600 chr4A_705178372 chr4A 705178372 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705178948 chr4A 705178948 T T C C 4 synonymous_variant LOW transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705178861 chr4A 705178861 A A G G 4 synonymous_variant LOW transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705179008 chr4A 705179008 A A G G 4 synonymous_variant LOW transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705178510 chr4A 705178510 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705178456 chr4A 705178456 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705179065 chr4A 705179065 A A G G 4 synonymous_variant LOW transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434600 chr4A_705179038 chr4A 705179038 T T C C 4 synonymous_variant LOW transcript non_Triplet 705178291 705180456 2166 8 0.369344413665743 RFvsST 583754800 744521639 160766840 no 790.753751964485 TraesCS4A01G434800 chr4A_705508588 chr4A 705508588 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 705504781 705508363 3583 2 0.0558191459670667 RFvsST 583754800 744521639 160766840 no 1098.1116712799 TraesCS4A01G434800 chr4A_705504096 chr4A 705504096 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 705504781 705508363 3583 2 0.0558191459670667 RFvsST 583754800 744521639 160766840 no 1098.1116712799 TraesCS4A01G435200 chr4A_705537256 chr4A 705537256 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705539312 chr4A 705539312 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705537268 chr4A 705537268 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705537200 chr4A 705537200 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705539343 chr4A 705539343 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705538010 chr4A 705538010 C C T T 4 synonymous_variant LOW transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705537362 chr4A 705537362 G G A A 4 synonymous_variant LOW transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705537190 chr4A 705537190 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705539359 chr4A 705539359 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705539287 chr4A 705539287 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435200 chr4A_705538022 chr4A 705538022 T T C C 4 synonymous_variant LOW transcript non_Triplet 705537314 705539254 1941 11 0.566718186501803 RFvsST 583754800 744521639 160766840 no 63.121515216626 TraesCS4A01G435600 chr4A_705633571 chr4A 705633571 A A G G 4 missense_variant MODERATE transcript non_Triplet 705632681 705633981 1301 3 0.230591852421214 RFvsST 583754800 744521639 160766840 no 94.8396250567826 TraesCS4A01G435600 chr4A_705634072 chr4A 705634072 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 705632681 705633981 1301 3 0.230591852421214 RFvsST 583754800 744521639 160766840 no 94.8396250567826 TraesCS4A01G435600 chr4A_705633699 chr4A 705633699 C C T T 4 synonymous_variant LOW transcript non_Triplet 705632681 705633981 1301 3 0.230591852421214 RFvsST 583754800 744521639 160766840 no 94.8396250567826 TraesCS4A01G437100 chr4A_707037081 chr4A 707037081 A A C C 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707037269 chr4A 707037269 A A G G 4 synonymous_variant LOW transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707039289 chr4A 707039289 G G A A 4 synonymous_variant LOW transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040413 chr4A 707040413 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707037378 chr4A 707037378 T T C C 4 synonymous_variant LOW transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707039624 chr4A 707039624 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040540 chr4A 707040540 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040372 chr4A 707040372 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707036970 chr4A 707036970 T T C C 4 synonymous_variant LOW transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040537 chr4A 707040537 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040341 chr4A 707040341 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437100 chr4A_707040342 chr4A 707040342 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 707036686 707039415 2730 12 0.43956043956044 RFvsST 583754800 744521639 160766840 no 43.3054124564192 TraesCS4A01G437200 chr4A_707047893 chr4A 707047893 G G C C 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G437200 chr4A_707042431 chr4A 707042431 A A T T 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G437200 chr4A_707041084 chr4A 707041084 G G A A 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G437200 chr4A_707041335 chr4A 707041335 G G A A 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G437200 chr4A_707041102 chr4A 707041102 A A T T 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G437200 chr4A_707046864 chr4A 707046864 C C T T 4 synonymous_variant LOW transcript non_Triplet 707040590 707048030 7441 6 0.0806343233436366 RFvsST 583754800 744521639 160766840 no 86.4304161115514 TraesCS4A01G438500 chr4A_708321499 chr4A 708321499 A A G G 4 missense_variant MODERATE transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708323221 chr4A 708323221 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322244 chr4A 708322244 G G C C 4 synonymous_variant LOW transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708321770 chr4A 708321770 T T G G 4 missense_variant MODERATE transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322984 chr4A 708322984 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708321847 chr4A 708321847 C C T T 4 missense_variant MODERATE transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322046 chr4A 708322046 A A G G 4 synonymous_variant LOW transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708323438 chr4A 708323438 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322292 chr4A 708322292 G G A A 4 synonymous_variant LOW transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322028 chr4A 708322028 G G A A 4 synonymous_variant LOW transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708323122 chr4A 708323122 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708321522 chr4A 708321522 A A G G 4 synonymous_variant LOW transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708322304 chr4A 708322304 C C A A 4 missense_variant MODERATE transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G438500 chr4A_708323462 chr4A 708323462 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 708321357 708322381 1025 14 1.36585365853659 RFvsST 583754800 744521639 160766840 no 102.428659679591 TraesCS4A01G439000 chr4A_708610662 chr4A 708610662 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612765 chr4A 708612765 G G A A 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612756 chr4A 708612756 C C T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613544 chr4A 708613544 A A G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613559 chr4A 708613559 A A G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612807 chr4A 708612807 C C T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613572 chr4A 708613572 C C T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612828 chr4A 708612828 G G T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613158 chr4A 708613158 T T A A 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610794 chr4A 708610794 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610673 chr4A 708610673 C C T T 4 missense_variant MODERATE transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613323 chr4A 708613323 T T C C 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613266 chr4A 708613266 G G T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612540 chr4A 708612540 T T C C 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708614021 chr4A 708614021 C C A A 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610260 chr4A 708610260 T T C C 4 missense_variant MODERATE transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612660 chr4A 708612660 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612606 chr4A 708612606 C C T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612567 chr4A 708612567 A A C C 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610629 chr4A 708610629 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610435 chr4A 708610435 C C T T 4 missense_variant MODERATE transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610506 chr4A 708610506 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708612636 chr4A 708612636 T T C C 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610503 chr4A 708610503 C C G G 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708613754 chr4A 708613754 G G A A 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G439000 chr4A_708610611 chr4A 708610611 C C T T 4 synonymous_variant LOW transcript non_Triplet 708610194 708614330 4137 26 0.628474740149867 RFvsST 583754800 744521639 160766840 no 629.958109426617 TraesCS4A01G440600 chr4A_709616033 chr4A 709616033 C C A A 4 synonymous_variant LOW transcript non_Triplet 709612443 709616324 3882 2 0.0515198351365276 RFvsST 583754800 744521639 160766840 no 116.078440117637 TraesCS4A01G440600 chr4A_709616051 chr4A 709616051 G G C C 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 709612443 709616324 3882 2 0.0515198351365276 RFvsST 583754800 744521639 160766840 no 116.078440117637 TraesCS4A01G441400 chr4A_709896124 chr4A 709896124 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709898119 chr4A 709898119 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709896219 chr4A 709896219 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709896096 chr4A 709896096 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709894948 chr4A 709894948 A A C C 4 synonymous_variant LOW transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709896214 chr4A 709896214 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709898087 chr4A 709898087 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709894868 chr4A 709894868 G G T T 4 missense_variant MODERATE transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709894705 chr4A 709894705 G G T T 4 missense_variant MODERATE transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709896354 chr4A 709896354 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441400 chr4A_709894256 chr4A 709894256 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 709894624 709896089 1466 11 0.750341064120055 RFvsST 583754800 744521639 160766840 no 112.038735820512 TraesCS4A01G441500 chr4A_709902136 chr4A 709902136 G G C C 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709902067 chr4A 709902067 T T C C 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901725 chr4A 709901725 C C G G 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709902127 chr4A 709902127 G G T T 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901503 chr4A 709901503 C C T T 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709904408 chr4A 709904408 A A G G 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901446 chr4A 709901446 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709904391 chr4A 709904391 T T C C 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901995 chr4A 709901995 C C A A 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709906330 chr4A 709906330 A A G G 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709909036 chr4A 709909036 G G A A 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901378 chr4A 709901378 C C G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709902366 chr4A 709902366 G G T T 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709906763 chr4A 709906763 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901869 chr4A 709901869 A A C C 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901350 chr4A 709901350 A A T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709909123 chr4A 709909123 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709906637 chr4A 709906637 C C T T 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901720 chr4A 709901720 G G A A 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709905356 chr4A 709905356 A A G G 4 synonymous_variant LOW transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709901448 chr4A 709901448 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709902263 chr4A 709902263 G G A A 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G441500 chr4A_709905783 chr4A 709905783 G G T T 4 missense_variant MODERATE transcript non_Triplet 709900905 709909255 8351 23 0.2754161178302 RFvsST 583754800 744521639 160766840 no 528.990189787457 TraesCS4A01G442100 chr4A_710243605 chr4A 710243605 T T C C 4 missense_variant MODERATE transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243464 chr4A 710243464 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243561 chr4A 710243561 A A G G 4 synonymous_variant LOW transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243164 chr4A 710243164 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243835 chr4A 710243835 A A G G 4 missense_variant MODERATE transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243814 chr4A 710243814 G G T T 4 missense_variant MODERATE transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243759 chr4A 710243759 C C G G 4 synonymous_variant LOW transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442100 chr4A_710243567 chr4A 710243567 T T C C 4 synonymous_variant LOW transcript non_Triplet 710243465 710244619 1155 8 0.692640692640693 RFvsST 583754800 744521639 160766840 no 84.1162330567484 TraesCS4A01G442400 chr4A_710394129 chr4A 710394129 G G A A 4 missense_variant MODERATE transcript non_Triplet 710393742 710394650 909 2 0.22002200220022 RFvsST 583754800 744521639 160766840 no 250.696718045723 TraesCS4A01G442400 chr4A_710394808 chr4A 710394808 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 710393742 710394650 909 2 0.22002200220022 RFvsST 583754800 744521639 160766840 no 250.696718045723 TraesCS4A01G442800 chr4A_710694676 chr4A 710694676 T T C C 4 missense_variant MODERATE transcript non_Triplet 710693933 710695540 1608 3 0.186567164179104 RFvsST 583754800 744521639 160766840 no 242.037071963307 TraesCS4A01G442800 chr4A_710694239 chr4A 710694239 A A G G 4 synonymous_variant LOW transcript non_Triplet 710693933 710695540 1608 3 0.186567164179104 RFvsST 583754800 744521639 160766840 no 242.037071963307 TraesCS4A01G442800 chr4A_710694018 chr4A 710694018 C C T T 4 missense_variant MODERATE transcript non_Triplet 710693933 710695540 1608 3 0.186567164179104 RFvsST 583754800 744521639 160766840 no 242.037071963307 TraesCS4A01G442900 chr4A_710743028 chr4A 710743028 T T C C 4 synonymous_variant LOW transcript non_Triplet 710742945 710744427 1483 5 0.337154416722859 RFvsST 583754800 744521639 160766840 no 7.08129777079091 TraesCS4A01G442900 chr4A_710744165 chr4A 710744165 G G A A 4 synonymous_variant LOW transcript non_Triplet 710742945 710744427 1483 5 0.337154416722859 RFvsST 583754800 744521639 160766840 no 7.08129777079091 TraesCS4A01G442900 chr4A_710744291 chr4A 710744291 G G A A 4 synonymous_variant LOW transcript non_Triplet 710742945 710744427 1483 5 0.337154416722859 RFvsST 583754800 744521639 160766840 no 7.08129777079091 TraesCS4A01G442900 chr4A_710744470 chr4A 710744470 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 710742945 710744427 1483 5 0.337154416722859 RFvsST 583754800 744521639 160766840 no 7.08129777079091 TraesCS4A01G442900 chr4A_710744556 chr4A 710744556 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 710742945 710744427 1483 5 0.337154416722859 RFvsST 583754800 744521639 160766840 no 7.08129777079091 TraesCS4A01G444200 chr4A_712863131 chr4A 712863131 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 712856736 712858739 2004 4 0.199600798403194 RFvsST 583754800 744521639 160766840 no 88.1438698999854 TraesCS4A01G444200 chr4A_712863205 chr4A 712863205 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 712856736 712858739 2004 4 0.199600798403194 RFvsST 583754800 744521639 160766840 no 88.1438698999854 TraesCS4A01G444200 chr4A_712863058 chr4A 712863058 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 712856736 712858739 2004 4 0.199600798403194 RFvsST 583754800 744521639 160766840 no 88.1438698999854 TraesCS4A01G444200 chr4A_712857732 chr4A 712857732 G G C C 4 missense_variant MODERATE transcript non_Triplet 712856736 712858739 2004 4 0.199600798403194 RFvsST 583754800 744521639 160766840 no 88.1438698999854 TraesCS4A01G444300 chr4A_712865254 chr4A 712865254 C C T T 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712867733 chr4A 712867733 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872585 chr4A 712872585 A A G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712865230 chr4A 712865230 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712864087 chr4A 712864087 G G A A 4 missense_variant MODERATE transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712865622 chr4A 712865622 T T C C 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863795 chr4A 712863795 A A G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712864107 chr4A 712864107 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712865491 chr4A 712865491 T T C C 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712873841 chr4A 712873841 G G C C 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872888 chr4A 712872888 C C T T 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712867706 chr4A 712867706 T T C C 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712865821 chr4A 712865821 A A T T 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863918 chr4A 712863918 C C T T 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863359 chr4A 712863359 C C T T 4 missense_variant MODERATE transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872775 chr4A 712872775 T T G G 4 missense_variant MODERATE transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712864927 chr4A 712864927 C C T T 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863357 chr4A 712863357 C C G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872970 chr4A 712872970 T T C C 4 missense_variant MODERATE transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872612 chr4A 712872612 T T A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872765 chr4A 712872765 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863984 chr4A 712863984 A A G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863426 chr4A 712863426 A A G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863434 chr4A 712863434 T T G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863915 chr4A 712863915 T T C C 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863969 chr4A 712863969 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863960 chr4A 712863960 A A G G 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712863954 chr4A 712863954 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712872639 chr4A 712872639 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444300 chr4A_712871113 chr4A 712871113 G G A A 4 synonymous_variant LOW transcript non_Triplet 712863210 712873993 10784 30 0.278189910979229 RFvsST 583754800 744521639 160766840 no 619.583525182954 TraesCS4A01G444500 chr4A_712914253 chr4A 712914253 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 712915290 712917030 1741 1 0.0574382538770821 RFvsST 583754800 744521639 160766840 no 19.865118394838 TraesCS4A01G445000 chr4A_713117686 chr4A 713117686 C C T T 4 missense_variant MODERATE transcript non_Triplet 713115583 713117802 2220 3 0.135135135135135 RFvsST 583754800 744521639 160766840 no 34.0978882793794 TraesCS4A01G445000 chr4A_713115768 chr4A 713115768 C T C T 3 synonymous_variant LOW transcript non_Triplet 713115583 713117802 2220 3 0.135135135135135 RFvsST 583754800 744521639 160766840 no 34.0978882793794 TraesCS4A01G445000 chr4A_713116185 chr4A 713116185 C C T T 4 missense_variant MODERATE transcript non_Triplet 713115583 713117802 2220 3 0.135135135135135 RFvsST 583754800 744521639 160766840 no 34.0978882793794 TraesCS4A01G445900 chr4A_713725063 chr4A 713725063 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 713728709 713730201 1493 1 0.0669792364367046 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G446600 chr4A_714103364 chr4A 714103364 T C T C 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103474 chr4A 714103474 A C A C 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103270 chr4A 714103270 C A C A 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103389 chr4A 714103389 C A C A 3 synonymous_variant LOW transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102024 chr4A 714102024 C G C G 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102306 chr4A 714102306 G C G C 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102027 chr4A 714102027 G A G A 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102301 chr4A 714102301 C A C A 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102107 chr4A 714102107 G A G A 3 synonymous_variant LOW transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103425 chr4A 714103425 A G A G 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103461 chr4A 714103461 A G A G 3 synonymous_variant LOW transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714100322 chr4A 714100322 T C T C 3 synonymous_variant LOW transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102105 chr4A 714102105 T C T C 3 synonymous_variant LOW transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714100323 chr4A 714100323 G A G A 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714103477 chr4A 714103477 G A G A 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102241 chr4A 714102241 T C T C 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G446600 chr4A_714102479 chr4A 714102479 C G C G 3 missense_variant MODERATE transcript non_Triplet 714099723 714103581 3859 17 0.440528634361234 RFvsST 583754800 744521639 160766840 no 169.409148227763 TraesCS4A01G448800 chr4A_715100656 chr4A 715100656 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 715098019 715099107 1089 2 0.183654729109275 RFvsST 583754800 744521639 160766840 no 81.496046699173 TraesCS4A01G448800 chr4A_715100655 chr4A 715100655 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 715098019 715099107 1089 2 0.183654729109275 RFvsST 583754800 744521639 160766840 no 81.496046699173 TraesCS4A01G452400 chr4A_717307287 chr4A 717307287 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 717307494 717311250 3757 3 0.079850944902848 RFvsST 583754800 744521639 160766840 no 168.253876052385 TraesCS4A01G452400 chr4A_717307668 chr4A 717307668 C C T T 4 synonymous_variant LOW transcript non_Triplet 717307494 717311250 3757 3 0.079850944902848 RFvsST 583754800 744521639 160766840 no 168.253876052385 TraesCS4A01G452400 chr4A_717307533 chr4A 717307533 G A G A 3 synonymous_variant LOW transcript non_Triplet 717307494 717311250 3757 3 0.079850944902848 RFvsST 583754800 744521639 160766840 no 168.253876052385 TraesCS4A01G452600 chr4A_717724502 chr4A 717724502 C G C G 3 missense_variant MODERATE transcript non_Triplet 717723895 717724822 928 2 0.21551724137931 RFvsST 583754800 744521639 160766840 no 117.925355947746 TraesCS4A01G452600 chr4A_717724084 chr4A 717724084 A C A C 3 synonymous_variant LOW transcript non_Triplet 717723895 717724822 928 2 0.21551724137931 RFvsST 583754800 744521639 160766840 no 117.925355947746 TraesCS4A01G452700 chr4A_717738276 chr4A 717738276 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 717738477 717742320 3844 2 0.0520291363163372 RFvsST 583754800 744521639 160766840 no 606.504308428449 TraesCS4A01G452700 chr4A_717738267 chr4A 717738267 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 717738477 717742320 3844 2 0.0520291363163372 RFvsST 583754800 744521639 160766840 no 606.504308428449 TraesCS4A01G454800 chr4A_718848912 chr4A 718848912 A A C C 4 synonymous_variant LOW transcript non_Triplet 718848841 718850219 1379 2 0.145032632342277 RFvsST 583754800 744521639 160766840 no 521.540560799092 TraesCS4A01G454800 chr4A_718850127 chr4A 718850127 G A G A 3 missense_variant MODERATE transcript non_Triplet 718848841 718850219 1379 2 0.145032632342277 RFvsST 583754800 744521639 160766840 no 521.540560799092 TraesCS4A01G455000 chr4A_718866607 chr4A 718866607 C T C T 3 missense_variant MODERATE transcript non_Triplet 718866179 718867005 827 2 0.241837968561064 RFvsST 583754800 744521639 160766840 no 153.858479586924 TraesCS4A01G455000 chr4A_718866298 chr4A 718866298 T C T C 3 synonymous_variant LOW transcript non_Triplet 718866179 718867005 827 2 0.241837968561064 RFvsST 583754800 744521639 160766840 no 153.858479586924 TraesCS4A01G455800 chr4A_719168705 chr4A 719168705 C C A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168314 chr4A 719168314 C T C T 3 missense_variant MODERATE transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168633 chr4A 719168633 G G C C 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168246 chr4A 719168246 C C G G 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168636 chr4A 719168636 C C G G 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168150 chr4A 719168150 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168024 chr4A 719168024 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168180 chr4A 719168180 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719167993 chr4A 719167993 T T C C 4 missense_variant MODERATE transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168174 chr4A 719168174 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719168262 chr4A 719168262 C C T T 4 missense_variant MODERATE transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719167919 chr4A 719167919 A A C C 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719167918 chr4A 719167918 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455800 chr4A_719167967 chr4A 719167967 G G A A 4 synonymous_variant LOW transcript non_Triplet 719164439 719168794 4356 14 0.32139577594123 RFvsST 583754800 744521639 160766840 no 611.448720865425 TraesCS4A01G455900 chr4A_719178749 chr4A 719178749 G G A A 4 synonymous_variant LOW transcript non_Triplet 719178222 719179736 1515 3 0.198019801980198 RFvsST 583754800 744521639 160766840 no 223.291558408514 TraesCS4A01G455900 chr4A_719178851 chr4A 719178851 C C T T 4 synonymous_variant LOW transcript non_Triplet 719178222 719179736 1515 3 0.198019801980198 RFvsST 583754800 744521639 160766840 no 223.291558408514 TraesCS4A01G455900 chr4A_719178869 chr4A 719178869 T T C C 4 synonymous_variant LOW transcript non_Triplet 719178222 719179736 1515 3 0.198019801980198 RFvsST 583754800 744521639 160766840 no 223.291558408514 TraesCS4A01G456000 chr4A_720515742 chr4A 720515742 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 720513302 720514657 1356 1 0.0737463126843658 RFvsST 583754800 744521639 160766840 no 21.5811209022514 TraesCS4A01G456300 chr4A_721385172 chr4A 721385172 C C T T 4 synonymous_variant LOW transcript non_Triplet 721381316 721385942 4627 4 0.0864491030905554 RFvsST 583754800 744521639 160766840 no 314.614113848783 TraesCS4A01G456300 chr4A_721385709 chr4A 721385709 G G C C 4 synonymous_variant LOW transcript non_Triplet 721381316 721385942 4627 4 0.0864491030905554 RFvsST 583754800 744521639 160766840 no 314.614113848783 TraesCS4A01G456300 chr4A_721385667 chr4A 721385667 C C G G 4 synonymous_variant LOW transcript non_Triplet 721381316 721385942 4627 4 0.0864491030905554 RFvsST 583754800 744521639 160766840 no 314.614113848783 TraesCS4A01G456300 chr4A_721385643 chr4A 721385643 C T C T 3 synonymous_variant LOW transcript non_Triplet 721381316 721385942 4627 4 0.0864491030905554 RFvsST 583754800 744521639 160766840 no 314.614113848783 TraesCS4A01G457100 chr4A_722410554 chr4A 722410554 A T A T 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411200 chr4A 722411200 G A G A 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411727 chr4A 722411727 G A G A 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411158 chr4A 722411158 A G A G 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411179 chr4A 722411179 T T C C 4 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411776 chr4A 722411776 G A G A 3 missense_variant MODERATE transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722410527 chr4A 722410527 C T C T 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411143 chr4A 722411143 T C T C 3 synonymous_variant LOW transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722413423 chr4A 722413423 A G A G 3 missense_variant MODERATE transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411800 chr4A 722411800 G C G C 3 missense_variant MODERATE transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457100 chr4A_722411168 chr4A 722411168 G G C C 4 missense_variant MODERATE transcript non_Triplet 722410147 722413452 3306 11 0.332728372655777 RFvsST 583754800 744521639 160766840 no 42.6188933027377 TraesCS4A01G457200 chr4A_722413483 chr4A 722413483 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 722414858 722415789 932 3 0.321888412017167 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G457200 chr4A_722413492 chr4A 722413492 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 722414858 722415789 932 3 0.321888412017167 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G457200 chr4A_722413803 chr4A 722413803 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 722414858 722415789 932 3 0.321888412017167 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G460000 chr4A_725660945 chr4A 725660945 G G A A 4 synonymous_variant LOW transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725661168 chr4A 725661168 G G A A 4 missense_variant MODERATE transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725663547 chr4A 725663547 A A G G 4 synonymous_variant LOW transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725661945 chr4A 725661945 T T C C 4 synonymous_variant LOW transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725661913 chr4A 725661913 G G A A 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725664380 chr4A 725664380 A A G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725664463 chr4A 725664463 C C T T 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725664411 chr4A 725664411 A A C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725663433 chr4A 725663433 G G T T 4 synonymous_variant LOW transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G460000 chr4A_725663113 chr4A 725663113 T T C C 4 synonymous_variant LOW transcript non_Triplet 725660348 725664584 4237 10 0.236016049091338 RFvsST 583754800 744521639 160766840 no 266.577692491707 TraesCS4A01G462100 chr4A_726440383 chr4A 726440383 A G A G 3 missense_variant MODERATE transcript non_Triplet 726436348 726440669 4322 5 0.11568718186025 RFvsST 583754800 744521639 160766840 no 48.0077676722077 TraesCS4A01G462100 chr4A_726436336 chr4A 726436336 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 726436348 726440669 4322 5 0.11568718186025 RFvsST 583754800 744521639 160766840 no 48.0077676722077 TraesCS4A01G462100 chr4A_726436337 chr4A 726436337 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 726436348 726440669 4322 5 0.11568718186025 RFvsST 583754800 744521639 160766840 no 48.0077676722077 TraesCS4A01G462100 chr4A_726440399 chr4A 726440399 G A G A 3 synonymous_variant LOW transcript non_Triplet 726436348 726440669 4322 5 0.11568718186025 RFvsST 583754800 744521639 160766840 no 48.0077676722077 TraesCS4A01G462100 chr4A_726440146 chr4A 726440146 A G A G 3 synonymous_variant LOW transcript non_Triplet 726436348 726440669 4322 5 0.11568718186025 RFvsST 583754800 744521639 160766840 no 48.0077676722077 TraesCS4A01G462200 chr4A_726447609 chr4A 726447609 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 726442154 726444278 2125 2 0.0941176470588235 RFvsST 583754800 744521639 160766840 no 30.0271278246645 TraesCS4A01G462200 chr4A_726440814 chr4A 726440814 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 726442154 726444278 2125 2 0.0941176470588235 RFvsST 583754800 744521639 160766840 no 30.0271278246645 TraesCS4A01G462300 chr4A_726447050 chr4A 726447050 G A G A 3 synonymous_variant LOW transcript non_Triplet 726446203 726447490 1288 5 0.388198757763975 RFvsST 583754800 744521639 160766840 no 99.9425473254528 TraesCS4A01G462300 chr4A_726446392 chr4A 726446392 T C T C 3 missense_variant MODERATE transcript non_Triplet 726446203 726447490 1288 5 0.388198757763975 RFvsST 583754800 744521639 160766840 no 99.9425473254528 TraesCS4A01G462300 chr4A_726445126 chr4A 726445126 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 726446203 726447490 1288 5 0.388198757763975 RFvsST 583754800 744521639 160766840 no 99.9425473254528 TraesCS4A01G462300 chr4A_726446394 chr4A 726446394 A G A G 3 missense_variant MODERATE transcript non_Triplet 726446203 726447490 1288 5 0.388198757763975 RFvsST 583754800 744521639 160766840 no 99.9425473254528 TraesCS4A01G462300 chr4A_726447334 chr4A 726447334 G A G A 3 synonymous_variant LOW transcript non_Triplet 726446203 726447490 1288 5 0.388198757763975 RFvsST 583754800 744521639 160766840 no 99.9425473254528 TraesCS4A01G469900 chr4A_731339324 chr4A 731339324 G T G T 3 synonymous_variant LOW transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731338035 chr4A 731338035 C A C A 3 missense_variant MODERATE transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731338070 chr4A 731338070 T C T C 3 missense_variant MODERATE transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731340564 chr4A 731340564 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731338242 chr4A 731338242 T C T C 3 missense_variant MODERATE transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731338157 chr4A 731338157 T C T C 3 missense_variant MODERATE transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731338142 chr4A 731338142 G A G A 3 missense_variant MODERATE transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G469900 chr4A_731340578 chr4A 731340578 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 731338027 731340484 2458 8 0.32546786004882 RFvsST 583754800 744521639 160766840 no 170.422711874911 TraesCS4A01G470800 chr4A_731604481 chr4A 731604481 T C T C 3 intron_variant MODIFIER transcript non_Triplet 731600609 731616777 16169 1 0.00618467437689406 RFvsST 583754800 744521639 160766840 no 7.40691612092781 TraesCS4A01G471500 chr4A_732004686 chr4A 732004686 C T C T 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004464 chr4A 732004464 G C G C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004703 chr4A 732004703 A G A G 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004332 chr4A 732004332 G C G C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005121 chr4A 732005121 G T G T 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004539 chr4A 732004539 C A C A 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004790 chr4A 732004790 T C T C 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004638 chr4A 732004638 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005331 chr4A 732005331 C G C G 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004977 chr4A 732004977 A C A C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005605 chr4A 732005605 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004616 chr4A 732004616 C G C G 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005351 chr4A 732005351 T G T G 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005256 chr4A 732005256 G A G A 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004840 chr4A 732004840 T A T A 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004891 chr4A 732004891 C T C T 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004329 chr4A 732004329 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005107 chr4A 732005107 G C G C 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005403 chr4A 732005403 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004506 chr4A 732004506 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732004989 chr4A 732004989 T C T C 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005391 chr4A 732005391 C G C G 3 synonymous_variant LOW transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G471500 chr4A_732005417 chr4A 732005417 A T A T 3 missense_variant MODERATE transcript non_Triplet 732004255 732005637 1383 23 1.66305133767173 RFvsST 583754800 744521639 160766840 no 607.583808976256 TraesCS4A01G472100 chr4A_732512197 chr4A 732512197 C T C T 3 missense_variant MODERATE transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472100 chr4A_732513891 chr4A 732513891 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472100 chr4A_732512417 chr4A 732512417 A G A G 3 synonymous_variant LOW transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472100 chr4A_732515576 chr4A 732515576 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472100 chr4A_732512434 chr4A 732512434 C T C T 3 missense_variant MODERATE transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472100 chr4A_732513674 chr4A 732513674 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 732511718 732513094 1377 6 0.435729847494553 RFvsST 583754800 744521639 160766840 no 459.315196736181 TraesCS4A01G472200 chr4A_732516742 chr4A 732516742 G T G T 3 synonymous_variant LOW transcript non_Triplet 732515640 732517344 1705 1 0.0586510263929619 RFvsST 583754800 744521639 160766840 no 250.422477765062 TraesCS4A01G472300 chr4A_732520183 chr4A 732520183 C T C T 3 synonymous_variant LOW transcript non_Triplet 732517419 732521895 4477 2 0.0446727719454992 RFvsST 583754800 744521639 160766840 no 96.8228847419084 TraesCS4A01G472300 chr4A_732521590 chr4A 732521590 G C G C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 732517419 732521895 4477 2 0.0446727719454992 RFvsST 583754800 744521639 160766840 no 96.8228847419084 TraesCS4A01G472400 chr4A_732771352 chr4A 732771352 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 732769923 732771320 1398 4 0.286123032904149 RFvsST 583754800 744521639 160766840 no 172.207690343455 TraesCS4A01G472400 chr4A_732771742 chr4A 732771742 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 732769923 732771320 1398 4 0.286123032904149 RFvsST 583754800 744521639 160766840 no 172.207690343455 TraesCS4A01G472400 chr4A_732771171 chr4A 732771171 T C T C 3 synonymous_variant LOW transcript non_Triplet 732769923 732771320 1398 4 0.286123032904149 RFvsST 583754800 744521639 160766840 no 172.207690343455 TraesCS4A01G472400 chr4A_732772457 chr4A 732772457 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 732769923 732771320 1398 4 0.286123032904149 RFvsST 583754800 744521639 160766840 no 172.207690343455 TraesCS4A01G472600 chr4A_732779265 chr4A 732779265 A G A G 3 missense_variant MODERATE transcript non_Triplet 732778944 732780700 1757 3 0.170745589072282 RFvsST 583754800 744521639 160766840 no 176.351202247883 TraesCS4A01G472600 chr4A_732778962 chr4A 732778962 G A G A 3 missense_variant MODERATE transcript non_Triplet 732778944 732780700 1757 3 0.170745589072282 RFvsST 583754800 744521639 160766840 no 176.351202247883 TraesCS4A01G472600 chr4A_732780778 chr4A 732780778 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 732778944 732780700 1757 3 0.170745589072282 RFvsST 583754800 744521639 160766840 no 176.351202247883 TraesCS4A01G473600 chr4A_733604527 chr4A 733604527 A G A G 3 missense_variant MODERATE transcript non_Triplet 733604342 733606012 1671 2 0.119688809096349 RFvsST 583754800 744521639 160766840 no 211.086729294571 TraesCS4A01G473600 chr4A_733604909 chr4A 733604909 C G C G 3 missense_variant MODERATE transcript non_Triplet 733604342 733606012 1671 2 0.119688809096349 RFvsST 583754800 744521639 160766840 no 211.086729294571 TraesCS4A01G474000 chr4A_733696056 chr4A 733696056 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 733693375 733695306 1932 2 0.10351966873706 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G474000 chr4A_733696092 chr4A 733696092 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 733693375 733695306 1932 2 0.10351966873706 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G474100 chr4A_733698848 chr4A 733698848 C G C G 3 synonymous_variant LOW transcript non_Triplet 733696309 733700079 3771 1 0.0265181649429859 RFvsST 583754800 744521639 160766840 no 90.7722629471525 TraesCS4A01G474200 chr4A_733706290 chr4A 733706290 G C G C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709421 chr4A 733709421 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733705998 chr4A 733705998 G C G C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733706314 chr4A 733706314 A G A G 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733706001 chr4A 733706001 C G C G 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709504 chr4A 733709504 C G C G 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733705968 chr4A 733705968 G C G C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733705416 chr4A 733705416 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733711292 chr4A 733711292 C T C T 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709358 chr4A 733709358 C T C T 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710660 chr4A 733710660 G C G C 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733705417 chr4A 733705417 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709631 chr4A 733709631 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733711277 chr4A 733711277 G A G A 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733706839 chr4A 733706839 C T C T 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733711339 chr4A 733711339 C A C A 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710561 chr4A 733710561 G A G A 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733711471 chr4A 733711471 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733711599 chr4A 733711599 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709721 chr4A 733709721 G A G A 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709913 chr4A 733709913 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710081 chr4A 733710081 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709860 chr4A 733709860 A G A G 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709805 chr4A 733709805 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709413 chr4A 733709413 A G A G 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710357 chr4A 733710357 C T C T 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733709966 chr4A 733709966 T C T C 3 missense_variant MODERATE transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710360 chr4A 733710360 G G A A 4 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G474200 chr4A_733710096 chr4A 733710096 T C T C 3 synonymous_variant LOW transcript non_Triplet 733705462 733711785 6324 29 0.458570524984187 RFvsST 583754800 744521639 160766840 no 622.870826519293 TraesCS4A01G475200 chr4A_734102158 chr4A 734102158 A G A G 3 synonymous_variant LOW transcript non_Triplet 734101960 734104708 2749 2 0.0727537286285922 RFvsST 583754800 744521639 160766840 no 183.412224371797 TraesCS4A01G475200 chr4A_734108342 chr4A 734108342 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 734101960 734104708 2749 2 0.0727537286285922 RFvsST 583754800 744521639 160766840 no 183.412224371797 TraesCS4A01G481200 chr4A_737156972 chr4A 737156972 C T C T 3 missense_variant MODERATE transcript non_Triplet 737155019 737158174 3156 4 0.126742712294043 RFvsST 583754800 744521639 160766840 no 90.1181325691615 TraesCS4A01G481200 chr4A_737156968 chr4A 737156968 T T C C 4 missense_variant MODERATE transcript non_Triplet 737155019 737158174 3156 4 0.126742712294043 RFvsST 583754800 744521639 160766840 no 90.1181325691615 TraesCS4A01G481200 chr4A_737157609 chr4A 737157609 G T G T 3 synonymous_variant LOW transcript non_Triplet 737155019 737158174 3156 4 0.126742712294043 RFvsST 583754800 744521639 160766840 no 90.1181325691615 TraesCS4A01G481200 chr4A_737157230 chr4A 737157230 C C A A 4 missense_variant MODERATE transcript non_Triplet 737155019 737158174 3156 4 0.126742712294043 RFvsST 583754800 744521639 160766840 no 90.1181325691615 TraesCS4A01G481300 chr4A_737198375 chr4A 737198375 A G A G 3 missense_variant MODERATE transcript non_Triplet 737194092 737205711 11620 2 0.0172117039586919 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G481300 chr4A_737199511 chr4A 737199511 T C T C 3 synonymous_variant LOW transcript non_Triplet 737194092 737205711 11620 2 0.0172117039586919 RFvsST 583754800 744521639 160766840 no No_match TraesCS4A01G481400 chr4A_737333368 chr4A 737333368 A G A G 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737333360 chr4A 737333360 G A G A 3 missense_variant MODERATE transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737334655 chr4A 737334655 T T C C 4 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737338063 chr4A 737338063 C A C A 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737334544 chr4A 737334544 A G A G 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737338911 chr4A 737338911 A G A G 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737334022 chr4A 737334022 T C T C 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737337374 chr4A 737337374 C A C A 3 missense_variant MODERATE transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737333647 chr4A 737333647 C T C T 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481400 chr4A_737338908 chr4A 737338908 G A G A 3 synonymous_variant LOW transcript non_Triplet 737332547 737340863 8317 10 0.120235661897319 RFvsST 583754800 744521639 160766840 no 380.891640634795 TraesCS4A01G481800 chr4A_737408442 chr4A 737408442 G G A A 4 missense_variant MODERATE transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481800 chr4A_737409154 chr4A 737409154 T A T A 3 missense_variant MODERATE transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481800 chr4A_737411674 chr4A 737411674 T C T C 3 synonymous_variant LOW transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481800 chr4A_737411924 chr4A 737411924 G A G A 3 synonymous_variant LOW transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481800 chr4A_737409408 chr4A 737409408 C A C A 3 synonymous_variant LOW transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481800 chr4A_737408441 chr4A 737408441 C G C G 3 synonymous_variant LOW transcript non_Triplet 737407845 737412573 4729 6 0.126876718122225 RFvsST 583754800 744521639 160766840 no 28.1106499544877 TraesCS4A01G481900 chr4A_737442933 chr4A 737442933 A A C C 4 synonymous_variant LOW transcript non_Triplet 737442822 737443544 723 1 0.138312586445367 RFvsST 583754800 744521639 160766840 no 53.5855924629779 TraesCS4A01G482000 chr4A_737481098 chr4A 737481098 G G A A 4 missense_variant MODERATE transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737479750 chr4A 737479750 G G C C 4 synonymous_variant LOW transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737479765 chr4A 737479765 G C G C 3 synonymous_variant LOW transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737481208 chr4A 737481208 G G C C 4 missense_variant MODERATE transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737481169 chr4A 737481169 C G C G 3 synonymous_variant LOW transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737481217 chr4A 737481217 G G C C 4 synonymous_variant LOW transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482000 chr4A_737481121 chr4A 737481121 G G C C 4 synonymous_variant LOW transcript non_Triplet 737479622 737481253 1632 7 0.428921568627451 RFvsST 583754800 744521639 160766840 no 87.4921901220299 TraesCS4A01G482100 chr4A_737484990 chr4A 737484990 C C T T 4 synonymous_variant LOW transcript non_Triplet 737484837 737487601 2765 1 0.0361663652802893 RFvsST 583754800 744521639 160766840 no 8.57235680677823 TraesCS4A01G484000 chr4A_738730276 chr4A 738730276 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 738728561 738741315 12755 2 0.0156801254410035 RFvsST 583754800 744521639 160766840 no 1044.45003342073 TraesCS4A01G484000 chr4A_738732293 chr4A 738732293 C C T T 4 synonymous_variant LOW transcript non_Triplet 738728561 738741315 12755 2 0.0156801254410035 RFvsST 583754800 744521639 160766840 no 1044.45003342073 TraesCS4A01G484800 chr4A_738888517 chr4A 738888517 C T C T 3 synonymous_variant LOW transcript non_Triplet 738886835 738890615 3781 1 0.0264480296217932 RFvsST 583754800 744521639 160766840 no 463.493295258825 TraesCS4A01G485300 chr4A_739038616 chr4A 739038616 T C T C 3 synonymous_variant LOW transcript non_Triplet 739027495 739038859 11365 3 0.0263968323801144 RFvsST 583754800 744521639 160766840 no 272.665408171996 TraesCS4A01G485300 chr4A_739034086 chr4A 739034086 T C T C 3 missense_variant MODERATE transcript non_Triplet 739027495 739038859 11365 3 0.0263968323801144 RFvsST 583754800 744521639 160766840 no 272.665408171996 TraesCS4A01G485300 chr4A_739030370 chr4A 739030370 A G A G 3 synonymous_variant LOW transcript non_Triplet 739027495 739038859 11365 3 0.0263968323801144 RFvsST 583754800 744521639 160766840 no 272.665408171996 TraesCS4A01G485400 chr4A_739066548 chr4A 739066548 C T C T 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739067873 chr4A 739067873 G C G C 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739066827 chr4A 739066827 G A G A 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739067906 chr4A 739067906 A G A G 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739065044 chr4A 739065044 G A G A 3 missense_variant MODERATE transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739065016 chr4A 739065016 A G A G 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739068139 chr4A 739068139 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739065046 chr4A 739065046 C T C T 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4A01G485400 chr4A_739067501 chr4A 739067501 C T C T 3 synonymous_variant LOW transcript non_Triplet 739064972 739068098 3127 9 0.287815797889351 RFvsST 583754800 744521639 160766840 no 897.22878999871 TraesCS4B01G000500 chr4B_538662 chr4B 538662 C C G G 4 synonymous_variant LOW transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000500 chr4B_538056 chr4B 538056 C T C T 3 synonymous_variant LOW transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000500 chr4B_538638 chr4B 538638 A T A T 3 synonymous_variant LOW transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000500 chr4B_537395 chr4B 537395 G G A A 4 synonymous_variant LOW transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000500 chr4B_537229 chr4B 537229 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000500 chr4B_537188 chr4B 537188 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 537269 539799 2531 6 0.237060450414856 RFvsST 235724 673534552 673298829 no 56.3014062335536 TraesCS4B01G000900 chr4B_622350 chr4B 622350 A C A C 3 synonymous_variant LOW transcript unique_Triplet 621258 623032 1775 3 0.169014084507042 RFvsST 235724 673534552 673298829 no 71.7719374197278 TraesCS4B01G000900 chr4B_622353 chr4B 622353 A G A G 3 synonymous_variant LOW transcript unique_Triplet 621258 623032 1775 3 0.169014084507042 RFvsST 235724 673534552 673298829 no 71.7719374197278 TraesCS4B01G000900 chr4B_623107 chr4B 623107 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 621258 623032 1775 3 0.169014084507042 RFvsST 235724 673534552 673298829 no 71.7719374197278 TraesCS4B01G001000 chr4B_640209 chr4B 640209 A G A G 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_639870 chr4B 639870 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640719 chr4B 640719 C G C G 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640835 chr4B 640835 T C T C 3 missense_variant MODERATE transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640494 chr4B 640494 G A G A 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640945 chr4B 640945 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640653 chr4B 640653 C G C G 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640647 chr4B 640647 A C A C 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640525 chr4B 640525 G A G A 3 missense_variant MODERATE transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640722 chr4B 640722 G C G C 3 synonymous_variant LOW transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001000 chr4B_640195 chr4B 640195 G C G C 3 missense_variant MODERATE transcript unique_Triplet 639894 640937 1044 11 1.0536398467433 RFvsST 235724 673534552 673298829 no 217.255219386049 TraesCS4B01G001500 chr4B_824735 chr4B 824735 A G A G 3 synonymous_variant LOW transcript non_Triplet 824570 825934 1365 2 0.146520146520147 RFvsST 235724 673534552 673298829 no 87.6611495557066 TraesCS4B01G001500 chr4B_825748 chr4B 825748 C A C A 3 missense_variant MODERATE transcript non_Triplet 824570 825934 1365 2 0.146520146520147 RFvsST 235724 673534552 673298829 no 87.6611495557066 TraesCS4B01G002400 chr4B_1255619 chr4B 1255619 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 1258094 1262777 4684 2 0.0426985482493595 RFvsST 235724 673534552 673298829 no 213.758503681897 TraesCS4B01G002400 chr4B_1254297 chr4B 1254297 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 1258094 1262777 4684 2 0.0426985482493595 RFvsST 235724 673534552 673298829 no 213.758503681897 TraesCS4B01G003000 chr4B_1774260 chr4B 1774260 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1774336 1777873 3538 2 0.0565291124929339 RFvsST 235724 673534552 673298829 no 473.399122679555 TraesCS4B01G003000 chr4B_1774237 chr4B 1774237 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1774336 1777873 3538 2 0.0565291124929339 RFvsST 235724 673534552 673298829 no 473.399122679555 TraesCS4B01G003100 chr4B_1782382 chr4B 1782382 G G A A 4 synonymous_variant LOW transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003100 chr4B_1778353 chr4B 1778353 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003100 chr4B_1782384 chr4B 1782384 C T C T 3 missense_variant MODERATE transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003100 chr4B_1778348 chr4B 1778348 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003100 chr4B_1778402 chr4B 1778402 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003100 chr4B_1778308 chr4B 1778308 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 1781032 1784884 3853 6 0.155722813392162 RFvsST 235724 673534552 673298829 no 122.477860061946 TraesCS4B01G003400 chr4B_1981572 chr4B 1981572 G G C C 4 synonymous_variant LOW transcript non_Triplet 1981455 1985539 4085 2 0.0489596083231334 RFvsST 235724 673534552 673298829 no 1.99821109268859 TraesCS4B01G003400 chr4B_1981991 chr4B 1981991 G A G A 3 synonymous_variant LOW transcript non_Triplet 1981455 1985539 4085 2 0.0489596083231334 RFvsST 235724 673534552 673298829 no 1.99821109268859 TraesCS4B01G003600 chr4B_2150180 chr4B 2150180 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2148376 2150179 1804 1 0.0554323725055432 RFvsST 235724 673534552 673298829 no 226.80104562496 TraesCS4B01G006600 chr4B_4516894 chr4B 4516894 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4517364 chr4B 4517364 G C G C 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4517615 chr4B 4517615 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4520164 chr4B 4520164 A T A T 3 missense_variant MODERATE transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4520016 chr4B 4520016 G A G A 3 missense_variant MODERATE transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4519957 chr4B 4519957 A G A G 3 missense_variant MODERATE transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G006600 chr4B_4517328 chr4B 4517328 G C G C 3 synonymous_variant LOW transcript unique_Triplet 4516943 4520387 3445 7 0.203193033381713 RFvsST 235724 673534552 673298829 no 171.415059708503 TraesCS4B01G007100 chr4B_4852602 chr4B 4852602 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4852026 chr4B 4852026 G T G T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4849818 chr4B 4849818 G C G C 3 synonymous_variant LOW transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4852517 chr4B 4852517 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4852104 chr4B 4852104 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4848614 chr4B 4848614 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4849815 chr4B 4849815 T C T C 3 synonymous_variant LOW transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4848913 chr4B 4848913 A C A C 3 missense_variant MODERATE transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4852040 chr4B 4852040 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4852611 chr4B 4852611 C A C A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4848758 chr4B 4848758 G C G C 3 synonymous_variant LOW transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007100 chr4B_4851101 chr4B 4851101 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4848543 4852830 4288 12 0.279850746268657 RFvsST 235724 673534552 673298829 no 583.11753196432 TraesCS4B01G007300 chr4B_4894236 chr4B 4894236 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 4894435 4897140 2706 1 0.0369549150036955 RFvsST 235724 673534552 673298829 no 340.803675679064 TraesCS4B01G009200 chr4B_6011725 chr4B 6011725 C T A T,A 6 downstream_gene_variant MODIFIER transcript unique_Triplet 6008020 6011642 3623 5 0.138007176373171 RFvsST 235724 673534552 673298829 no 167.240304095388 TraesCS4B01G009200 chr4B_6011438 chr4B 6011438 A A G G 4 synonymous_variant LOW transcript unique_Triplet 6008020 6011642 3623 5 0.138007176373171 RFvsST 235724 673534552 673298829 no 167.240304095388 TraesCS4B01G009200 chr4B_6011726 chr4B 6011726 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 6008020 6011642 3623 5 0.138007176373171 RFvsST 235724 673534552 673298829 no 167.240304095388 TraesCS4B01G009200 chr4B_6008162 chr4B 6008162 G C G C 3 missense_variant MODERATE transcript unique_Triplet 6008020 6011642 3623 5 0.138007176373171 RFvsST 235724 673534552 673298829 no 167.240304095388 TraesCS4B01G009200 chr4B_6011433 chr4B 6011433 A G A G 3 missense_variant MODERATE transcript unique_Triplet 6008020 6011642 3623 5 0.138007176373171 RFvsST 235724 673534552 673298829 no 167.240304095388 TraesCS4B01G009300 chr4B_6027072 chr4B 6027072 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6026839 chr4B 6026839 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6030040 chr4B 6030040 T G T G 3 synonymous_variant LOW transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027313 chr4B 6027313 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6030036 chr4B 6030036 C C T T 4 missense_variant MODERATE transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027134 chr4B 6027134 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6030047 chr4B 6030047 A T A T 3 missense_variant MODERATE transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027078 chr4B 6027078 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6026924 chr4B 6026924 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027373 chr4B 6027373 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027378 chr4B 6027378 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009300 chr4B_6027383 chr4B 6027383 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6029635 6030355 721 12 1.66435506241331 RFvsST 235724 673534552 673298829 no 92.3926770333775 TraesCS4B01G009400 chr4B_6030362 chr4B 6030362 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 6033835 6035279 1445 4 0.27681660899654 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G009400 chr4B_6030399 chr4B 6030399 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 6033835 6035279 1445 4 0.27681660899654 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G009400 chr4B_6030402 chr4B 6030402 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 6033835 6035279 1445 4 0.27681660899654 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G009400 chr4B_6030431 chr4B 6030431 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 6033835 6035279 1445 4 0.27681660899654 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G009500 chr4B_6039595 chr4B 6039595 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6041765 chr4B 6041765 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6041716 chr4B 6041716 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6041701 chr4B 6041701 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6039665 chr4B 6039665 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6041758 chr4B 6041758 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6041457 chr4B 6041457 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6042343 chr4B 6042343 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009500 chr4B_6039603 chr4B 6039603 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 6039104 6042537 3434 9 0.262085032032615 RFvsST 235724 673534552 673298829 no 231.661700091459 TraesCS4B01G009800 chr4B_6140302 chr4B 6140302 G G C C 4 synonymous_variant LOW transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6140764 chr4B 6140764 A G C G,C 6 synonymous_variant LOW transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6139581 chr4B 6139581 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6139865 chr4B 6139865 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6140393 chr4B 6140393 T T C C 4 missense_variant MODERATE transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6140368 chr4B 6140368 C C G G 4 synonymous_variant LOW transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009800 chr4B_6140326 chr4B 6140326 C C G G 4 synonymous_variant LOW transcript unique_Triplet 6140156 6141307 1152 7 0.607638888888889 RFvsST 235724 673534552 673298829 no 1828.36916344053 TraesCS4B01G009900 chr4B_6149866 chr4B 6149866 G G A A 4 synonymous_variant LOW transcript unique_Triplet 6145862 6150103 4242 3 0.0707213578500707 RFvsST 235724 673534552 673298829 no 38.3098776984078 TraesCS4B01G009900 chr4B_6150079 chr4B 6150079 G G A A 4 synonymous_variant LOW transcript unique_Triplet 6145862 6150103 4242 3 0.0707213578500707 RFvsST 235724 673534552 673298829 no 38.3098776984078 TraesCS4B01G009900 chr4B_6149830 chr4B 6149830 T T C C 4 synonymous_variant LOW transcript unique_Triplet 6145862 6150103 4242 3 0.0707213578500707 RFvsST 235724 673534552 673298829 no 38.3098776984078 TraesCS4B01G013500 chr4B_9683787 chr4B 9683787 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 9676270 9683958 7689 1 0.013005592404734 RFvsST 235724 673534552 673298829 no 338.322230851787 TraesCS4B01G014700 chr4B_10591263 chr4B 10591263 G G T T 4 synonymous_variant LOW transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10592584 chr4B 10592584 C C T T 4 synonymous_variant LOW transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10588864 chr4B 10588864 C C A A 4 missense_variant MODERATE transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10591793 chr4B 10591793 G G A A 4 synonymous_variant LOW transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10591134 chr4B 10591134 T T C C 4 synonymous_variant LOW transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10590797 chr4B 10590797 C C T T 4 synonymous_variant LOW transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G014700 chr4B_10590944 chr4B 10590944 T T A A 4 missense_variant MODERATE transcript unique_Triplet 10587301 10592800 5500 7 0.127272727272727 RFvsST 235724 673534552 673298829 no 132.343630600423 TraesCS4B01G018200 chr4B_13284383 chr4B 13284383 C G C G 3 missense_variant MODERATE transcript unique_Triplet 13283367 13285097 1731 1 0.0577700751010976 RFvsST 235724 673534552 673298829 no 52.4670944649615 TraesCS4B01G018900 chr4B_13944965 chr4B 13944965 C C G G 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13947462 chr4B 13947462 A A G G 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13944587 chr4B 13944587 C C G G 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13944566 chr4B 13944566 T T C C 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13944963 chr4B 13944963 C C A A 4 missense_variant MODERATE transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13944454 chr4B 13944454 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13945870 chr4B 13945870 C C G G 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13945600 chr4B 13945600 T T C C 4 synonymous_variant LOW transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13947722 chr4B 13947722 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G018900 chr4B_13944270 chr4B 13944270 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 13944552 13947600 3049 10 0.32797638570023 RFvsST 235724 673534552 673298829 no 672.316437064303 TraesCS4B01G019000 chr4B_13976590 chr4B 13976590 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 13973843 13976333 2491 4 0.160578081091931 RFvsST 235724 673534552 673298829 no 19.0589362205507 TraesCS4B01G019000 chr4B_13977243 chr4B 13977243 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 13973843 13976333 2491 4 0.160578081091931 RFvsST 235724 673534552 673298829 no 19.0589362205507 TraesCS4B01G019000 chr4B_13973913 chr4B 13973913 G G A A 4 missense_variant MODERATE transcript non_Triplet 13973843 13976333 2491 4 0.160578081091931 RFvsST 235724 673534552 673298829 no 19.0589362205507 TraesCS4B01G019000 chr4B_13976526 chr4B 13976526 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 13973843 13976333 2491 4 0.160578081091931 RFvsST 235724 673534552 673298829 no 19.0589362205507 TraesCS4B01G019100 chr4B_13981735 chr4B 13981735 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 13977250 13981662 4413 2 0.0453206435531385 RFvsST 235724 673534552 673298829 no 39.7440236072078 TraesCS4B01G019100 chr4B_13977274 chr4B 13977274 G G A A 4 synonymous_variant LOW transcript non_Triplet 13977250 13981662 4413 2 0.0453206435531385 RFvsST 235724 673534552 673298829 no 39.7440236072078 TraesCS4B01G019600 chr4B_14055243 chr4B 14055243 A C A C 3 synonymous_variant LOW transcript unique_Triplet 14054651 14055886 1236 1 0.0809061488673139 RFvsST 235724 673534552 673298829 no 66.3233387134204 TraesCS4B01G019700 chr4B_14110621 chr4B 14110621 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 14104211 14107757 3547 1 0.0281928390188892 RFvsST 235724 673534552 673298829 no 27.6766827877258 TraesCS4B01G019900 chr4B_14111237 chr4B 14111237 T T C C 4 missense_variant MODERATE transcript unique_Triplet 14110754 14115548 4795 1 0.0208550573514077 RFvsST 235724 673534552 673298829 no 92.4291303519255 TraesCS4B01G020000 chr4B_14118214 chr4B 14118214 T C T C 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14118208 chr4B 14118208 G A G A 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14123326 chr4B 14123326 T C T C 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14119351 chr4B 14119351 G A G A 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14118285 chr4B 14118285 T C T C 3 missense_variant MODERATE transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14125620 chr4B 14125620 C G C G 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14124036 chr4B 14124036 T C T C 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14123985 chr4B 14123985 A C A C 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14119683 chr4B 14119683 T C T C 3 missense_variant MODERATE transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14119436 chr4B 14119436 T C T C 3 missense_variant MODERATE transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14124159 chr4B 14124159 C T C T 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14122587 chr4B 14122587 T C T C 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14124030 chr4B 14124030 T A T A 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14125596 chr4B 14125596 C G C G 3 synonymous_variant LOW transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G020000 chr4B_14124098 chr4B 14124098 T C T C 3 missense_variant MODERATE transcript unique_Triplet 14118078 14125801 7724 15 0.194199896426722 RFvsST 235724 673534552 673298829 no 109.756633737661 TraesCS4B01G022300 chr4B_16061708 chr4B 16061708 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 16056897 16063157 6261 4 0.0638875578980993 RFvsST 235724 673534552 673298829 no 51.436497214312 TraesCS4B01G022300 chr4B_16058486 chr4B 16058486 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 16056897 16063157 6261 4 0.0638875578980993 RFvsST 235724 673534552 673298829 no 51.436497214312 TraesCS4B01G022300 chr4B_16061660 chr4B 16061660 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 16056897 16063157 6261 4 0.0638875578980993 RFvsST 235724 673534552 673298829 no 51.436497214312 TraesCS4B01G022300 chr4B_16058123 chr4B 16058123 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 16056897 16063157 6261 4 0.0638875578980993 RFvsST 235724 673534552 673298829 no 51.436497214312 TraesCS4B01G023200 chr4B_16895009 chr4B 16895009 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 16894777 16895391 615 2 0.32520325203252 RFvsST 235724 673534552 673298829 no 44.1960660532106 TraesCS4B01G023200 chr4B_16895018 chr4B 16895018 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 16894777 16895391 615 2 0.32520325203252 RFvsST 235724 673534552 673298829 no 44.1960660532106 TraesCS4B01G023800 chr4B_17096599 chr4B 17096599 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17091704 17095208 3505 3 0.0855920114122682 RFvsST 235724 673534552 673298829 no 7561.77320737577 TraesCS4B01G023800 chr4B_17097450 chr4B 17097450 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17091704 17095208 3505 3 0.0855920114122682 RFvsST 235724 673534552 673298829 no 7561.77320737577 TraesCS4B01G023800 chr4B_17096912 chr4B 17096912 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17091704 17095208 3505 3 0.0855920114122682 RFvsST 235724 673534552 673298829 no 7561.77320737577 TraesCS4B01G026400 chr4B_19755390 chr4B 19755390 C T C T 3 missense_variant MODERATE transcript unique_Triplet 19754785 19759359 4575 1 0.0218579234972678 RFvsST 235724 673534552 673298829 no 163.934007959887 TraesCS4B01G028000 chr4B_20748905 chr4B 20748905 A A T T 4 synonymous_variant LOW transcript unique_Triplet 20747166 20748964 1799 1 0.0555864369093941 RFvsST 235724 673534552 673298829 no 170.604173053461 TraesCS4B01G028700 chr4B_21215988 chr4B 21215988 G C G C 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21215886 chr4B 21215886 T G T G 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21215832 chr4B 21215832 C G C G 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21215928 chr4B 21215928 C G C G 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21218678 chr4B 21218678 T T A A 4 missense_variant MODERATE transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21215925 chr4B 21215925 C G C G 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028700 chr4B_21215748 chr4B 21215748 C T C T 3 synonymous_variant LOW transcript unique_Triplet 21215665 21219098 3434 7 0.203843913803145 RFvsST 235724 673534552 673298829 no 67.5232765910652 TraesCS4B01G028900 chr4B_21377425 chr4B 21377425 T C T C 3 missense_variant MODERATE transcript unique_Triplet 21366456 21378019 11564 5 0.0432376340366655 RFvsST 235724 673534552 673298829 no 214.055638066399 TraesCS4B01G028900 chr4B_21370562 chr4B 21370562 A G A G 3 missense_variant MODERATE transcript unique_Triplet 21366456 21378019 11564 5 0.0432376340366655 RFvsST 235724 673534552 673298829 no 214.055638066399 TraesCS4B01G028900 chr4B_21377111 chr4B 21377111 A G A G 3 synonymous_variant LOW transcript unique_Triplet 21366456 21378019 11564 5 0.0432376340366655 RFvsST 235724 673534552 673298829 no 214.055638066399 TraesCS4B01G028900 chr4B_21377117 chr4B 21377117 T C T C 3 synonymous_variant LOW transcript unique_Triplet 21366456 21378019 11564 5 0.0432376340366655 RFvsST 235724 673534552 673298829 no 214.055638066399 TraesCS4B01G028900 chr4B_21377911 chr4B 21377911 C T C T 3 synonymous_variant LOW transcript unique_Triplet 21366456 21378019 11564 5 0.0432376340366655 RFvsST 235724 673534552 673298829 no 214.055638066399 TraesCS4B01G029000 chr4B_21379042 chr4B 21379042 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 21379078 21379368 291 1 0.343642611683849 RFvsST 235724 673534552 673298829 no 234.368929669435 TraesCS4B01G029300 chr4B_21553941 chr4B 21553941 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21551279 21553934 2656 1 0.0376506024096386 RFvsST 235724 673534552 673298829 no 15.6632999974958 TraesCS4B01G030300 chr4B_22563138 chr4B 22563138 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 22564759 22574557 9799 4 0.0408204918869272 RFvsST 235724 673534552 673298829 no 106.736729381086 TraesCS4B01G030300 chr4B_22574472 chr4B 22574472 C T C T 3 missense_variant MODERATE transcript unique_Triplet 22564759 22574557 9799 4 0.0408204918869272 RFvsST 235724 673534552 673298829 no 106.736729381086 TraesCS4B01G030300 chr4B_22575131 chr4B 22575131 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 22564759 22574557 9799 4 0.0408204918869272 RFvsST 235724 673534552 673298829 no 106.736729381086 TraesCS4B01G030300 chr4B_22574513 chr4B 22574513 C T C T 3 synonymous_variant LOW transcript unique_Triplet 22564759 22574557 9799 4 0.0408204918869272 RFvsST 235724 673534552 673298829 no 106.736729381086 TraesCS4B01G030400 chr4B_22848778 chr4B 22848778 G A G A 3 synonymous_variant LOW transcript unique_Triplet 22837460 22859463 22004 1 0.0045446282494092 RFvsST 235724 673534552 673298829 no 624.301506429451 TraesCS4B01G030500 chr4B_22863587 chr4B 22863587 G C G C 3 missense_variant MODERATE transcript unique_Triplet 22862067 22867037 4971 2 0.0402333534500101 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G030500 chr4B_22865848 chr4B 22865848 G A G A 3 synonymous_variant LOW transcript unique_Triplet 22862067 22867037 4971 2 0.0402333534500101 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G032800 chr4B_24566350 chr4B 24566350 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 24563203 24566505 3303 2 0.0605510142294883 RFvsST 235724 673534552 673298829 no 88.6029791174976 TraesCS4B01G032800 chr4B_24566370 chr4B 24566370 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 24563203 24566505 3303 2 0.0605510142294883 RFvsST 235724 673534552 673298829 no 88.6029791174976 TraesCS4B01G036800 chr4B_26491532 chr4B 26491532 T T C C 4 missense_variant MODERATE transcript unique_Triplet 26486605 26492023 5419 1 0.0184535892231039 RFvsST 235724 673534552 673298829 no 182.537357162718 TraesCS4B01G043100 chr4B_30861571 chr4B 30861571 C C T T 4 stop_gained HIGH transcript unique_Triplet 30861382 30863247 1866 1 0.0535905680600214 RFvsST 235724 673534552 673298829 no 1451.57968384454 TraesCS4B01G045000 chr4B_32423845 chr4B 32423845 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 32420568 32425092 4525 3 0.0662983425414365 RFvsST 235724 673534552 673298829 no 357.64369887977 TraesCS4B01G045000 chr4B_32423844 chr4B 32423844 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 32420568 32425092 4525 3 0.0662983425414365 RFvsST 235724 673534552 673298829 no 357.64369887977 TraesCS4B01G045000 chr4B_32424973 chr4B 32424973 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 32420568 32425092 4525 3 0.0662983425414365 RFvsST 235724 673534552 673298829 no 357.64369887977 TraesCS4B01G045100 chr4B_32424160 chr4B 32424160 G G C C 4 missense_variant MODERATE transcript non_Triplet 32423873 32424934 1062 2 0.188323917137476 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G045100 chr4B_32424157 chr4B 32424157 G G A A 4 missense_variant MODERATE transcript non_Triplet 32423873 32424934 1062 2 0.188323917137476 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G045400 chr4B_32496476 chr4B 32496476 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 32496484 32498047 1564 1 0.0639386189258312 RFvsST 235724 673534552 673298829 no 24.2535084272867 TraesCS4B01G045700 chr4B_32896670 chr4B 32896670 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 32896637 32898153 1517 1 0.0659195781147001 RFvsST 235724 673534552 673298829 no 3040.39378675289 TraesCS4B01G047900 chr4B_35526220 chr4B 35526220 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 35520607 35526208 5602 2 0.0357015351660121 RFvsST 235724 673534552 673298829 no 919.32039322424 TraesCS4B01G047900 chr4B_35520772 chr4B 35520772 A A G G 4 synonymous_variant LOW transcript unique_Triplet 35520607 35526208 5602 2 0.0357015351660121 RFvsST 235724 673534552 673298829 no 919.32039322424 TraesCS4B01G049500 chr4B_37863351 chr4B 37863351 A A G G 4 synonymous_variant LOW transcript unique_Triplet 37859589 37869575 9987 2 0.0200260338439972 RFvsST 235724 673534552 673298829 no 220.685489077566 TraesCS4B01G049500 chr4B_37869248 chr4B 37869248 C C T T 4 missense_variant MODERATE transcript unique_Triplet 37859589 37869575 9987 2 0.0200260338439972 RFvsST 235724 673534552 673298829 no 220.685489077566 TraesCS4B01G049700 chr4B_38028398 chr4B 38028398 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 38025500 38028386 2887 1 0.0346380325597506 RFvsST 235724 673534552 673298829 no 434.900938888156 TraesCS4B01G049800 chr4B_38282771 chr4B 38282771 A A G G 4 synonymous_variant LOW transcript unique_Triplet 38280792 38284453 3662 4 0.109229929000546 RFvsST 235724 673534552 673298829 no 331.383711046743 TraesCS4B01G049800 chr4B_38281242 chr4B 38281242 T T C C 4 synonymous_variant LOW transcript unique_Triplet 38280792 38284453 3662 4 0.109229929000546 RFvsST 235724 673534552 673298829 no 331.383711046743 TraesCS4B01G049800 chr4B_38280897 chr4B 38280897 A A G G 4 synonymous_variant LOW transcript unique_Triplet 38280792 38284453 3662 4 0.109229929000546 RFvsST 235724 673534552 673298829 no 331.383711046743 TraesCS4B01G049800 chr4B_38282972 chr4B 38282972 A A G G 4 synonymous_variant LOW transcript unique_Triplet 38280792 38284453 3662 4 0.109229929000546 RFvsST 235724 673534552 673298829 no 331.383711046743 TraesCS4B01G051600 chr4B_40235821 chr4B 40235821 C C G G 4 intron_variant MODIFIER transcript non_Triplet 40234246 40236605 2360 1 0.0423728813559322 RFvsST 235724 673534552 673298829 no 578.586514785443 TraesCS4B01G051900 chr4B_40752468 chr4B 40752468 C C T T 4 synonymous_variant LOW transcript unique_Triplet 40746392 40753625 7234 1 0.0138236107271219 RFvsST 235724 673534552 673298829 no 686.956846441404 TraesCS4B01G056700 chr4B_46609855 chr4B 46609855 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 46607160 46609661 2502 5 0.199840127897682 RFvsST 235724 673534552 673298829 no 935.399553685578 TraesCS4B01G056700 chr4B_46607069 chr4B 46607069 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 46607160 46609661 2502 5 0.199840127897682 RFvsST 235724 673534552 673298829 no 935.399553685578 TraesCS4B01G056700 chr4B_46609391 chr4B 46609391 T T C C 4 synonymous_variant LOW transcript unique_Triplet 46607160 46609661 2502 5 0.199840127897682 RFvsST 235724 673534552 673298829 no 935.399553685578 TraesCS4B01G056700 chr4B_46608203 chr4B 46608203 C C T T 4 synonymous_variant LOW transcript unique_Triplet 46607160 46609661 2502 5 0.199840127897682 RFvsST 235724 673534552 673298829 no 935.399553685578 TraesCS4B01G056700 chr4B_46609742 chr4B 46609742 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 46607160 46609661 2502 5 0.199840127897682 RFvsST 235724 673534552 673298829 no 935.399553685578 TraesCS4B01G065900 chr4B_58784128 chr4B 58784128 G G A A 4 missense_variant MODERATE transcript unique_Triplet 58782428 58785536 3109 1 0.0321646831778707 RFvsST 235724 673534552 673298829 no 103.539582950925 TraesCS4B01G068100 chr4B_60543810 chr4B 60543810 C C G G 4 missense_variant MODERATE transcript unique_Triplet 60542831 60547494 4664 1 0.0214408233276158 RFvsST 235724 673534552 673298829 no 111.369699892136 TraesCS4B01G069700 chr4B_63751752 chr4B 63751752 T T C C 4 synonymous_variant LOW transcript unique_Triplet 63749760 63759072 9313 1 0.0107376785139053 RFvsST 235724 673534552 673298829 no 115.276031799509 TraesCS4B01G080300 chr4B_78025849 chr4B 78025849 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 78022085 78033407 11323 1 0.00883158173628897 RFvsST 235724 673534552 673298829 no 149.835046355329 TraesCS4B01G081200 chr4B_78818194 chr4B 78818194 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 78818186 78819636 1451 1 0.0689179875947622 RFvsST 235724 673534552 673298829 no 633.651567450218 TraesCS4B01G084700 chr4B_83054121 chr4B 83054121 A A G G 4 missense_variant MODERATE transcript unique_Triplet 83052927 83058776 5850 1 0.0170940170940171 RFvsST 235724 673534552 673298829 no 481.004924282258 TraesCS4B01G089500 chr4B_90727087 chr4B 90727087 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 90727625 90729025 1401 1 0.0713775874375446 RFvsST 235724 673534552 673298829 no 48730.6655598961 TraesCS4B01G092600 chr4B_95346311 chr4B 95346311 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 95343539 95349069 5531 1 0.0180799132164166 RFvsST 235724 673534552 673298829 no 218.220395914032 TraesCS4B01G114600 chr4B_130625061 chr4B 130625061 T T C C 4 missense_variant MODERATE transcript unique_Triplet 130622796 130626665 3870 1 0.0258397932816537 RFvsST 235724 673534552 673298829 no 1880.78560717261 TraesCS4B01G115000 chr4B_131709212 chr4B 131709212 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 131705592 131706179 588 1 0.170068027210884 RFvsST 235724 673534552 673298829 no 7.65947443847055 TraesCS4B01G121700 chr4B_144683191 chr4B 144683191 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 144680289 144683484 3196 1 0.0312891113892365 RFvsST 235724 673534552 673298829 no 417.195352476061 TraesCS4B01G122500 chr4B_145530531 chr4B 145530531 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 145533780 145534890 1111 1 0.09000900090009 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G124800 chr4B_150740535 chr4B 150740535 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 150737871 150740509 2639 1 0.0378931413414172 RFvsST 235724 673534552 673298829 no 206.66091947232 TraesCS4B01G128100 chr4B_167915812 chr4B 167915812 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 167913692 167914538 847 1 0.118063754427391 RFvsST 235724 673534552 673298829 no 653.489956392054 TraesCS4B01G132700 chr4B_172508540 chr4B 172508540 G G A A 4 missense_variant MODERATE transcript unique_Triplet 172507960 172511363 3404 1 0.0293772032902468 RFvsST 235724 673534552 673298829 no 127.643792442521 TraesCS4B01G133700 chr4B_173355602 chr4B 173355602 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 173354640 173366997 12358 1 0.00809192425958893 RFvsST 235724 673534552 673298829 no 11.5230594283014 TraesCS4B01G142500 chr4B_188210875 chr4B 188210875 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 188211028 188211759 732 2 0.273224043715847 RFvsST 235724 673534552 673298829 no 85.3682967016844 TraesCS4B01G142500 chr4B_188211711 chr4B 188211711 C C G G 4 missense_variant MODERATE transcript unique_Triplet 188211028 188211759 732 2 0.273224043715847 RFvsST 235724 673534552 673298829 no 85.3682967016844 TraesCS4B01G150500 chr4B_235398607 chr4B 235398607 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 235355774 235398548 42775 1 0.00233781414377557 RFvsST 235724 673534552 673298829 no 107.572396753084 TraesCS4B01G153600 chr4B_265288218 chr4B 265288218 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 265289839 265290375 537 1 0.186219739292365 RFvsST 235724 673534552 673298829 no 55.390896576814 TraesCS4B01G155300 chr4B_277321002 chr4B 277321002 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 277317186 277320817 3632 1 0.0275330396475771 RFvsST 235724 673534552 673298829 no 101.493260433967 TraesCS4B01G156400 chr4B_286744595 chr4B 286744595 A A T T 4 missense_variant MODERATE transcript non_Triplet 286744480 286749244 4765 1 0.0209863588667366 RFvsST 235724 673534552 673298829 no 302.237470227456 TraesCS4B01G157600 chr4B_299567182 chr4B 299567182 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 299551269 299567017 15749 1 0.00634960949901581 RFvsST 235724 673534552 673298829 no 227.370286496156 TraesCS4B01G160000 chr4B_311352103 chr4B 311352103 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 311352299 311375244 22946 1 0.00435805804933322 RFvsST 235724 673534552 673298829 no 196.279307892595 TraesCS4B01G161600 chr4B_320327143 chr4B 320327143 T T G G 4 synonymous_variant LOW transcript non_Triplet 320325115 320331217 6103 1 0.0163853842372604 RFvsST 235724 673534552 673298829 no 177.683018178939 TraesCS4B01G163200 chr4B_332574423 chr4B 332574423 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 332575119 332575910 792 1 0.126262626262626 RFvsST 235724 673534552 673298829 no 134.520857911753 TraesCS4B01G169000 chr4B_369288247 chr4B 369288247 C C T T 4 missense_variant MODERATE transcript non_Triplet 369287975 369288631 657 1 0.15220700152207 RFvsST 235724 673534552 673298829 no 69.1037502144055 TraesCS4B01G170000 chr4B_371975491 chr4B 371975491 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 371968746 371977591 8846 1 0.0113045444268596 RFvsST 235724 673534552 673298829 no 576.661244386491 TraesCS4B01G171100 chr4B_374629991 chr4B 374629991 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 374627166 374629847 2682 1 0.0372856077554064 RFvsST 235724 673534552 673298829 no 145.403933291117 TraesCS4B01G171700 chr4B_376031558 chr4B 376031558 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 376029084 376029497 414 1 0.241545893719807 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G181800 chr4B_398786661 chr4B 398786661 T T C C 4 missense_variant MODERATE transcript unique_Triplet 398786214 398789553 3340 1 0.029940119760479 RFvsST 235724 673534552 673298829 no 150.390699525326 TraesCS4B01G182400 chr4B_399941698 chr4B 399941698 C C T T 4 synonymous_variant LOW transcript unique_Triplet 399940013 399947754 7742 1 0.0129165590286748 RFvsST 235724 673534552 673298829 no 247.156070820775 TraesCS4B01G183900 chr4B_403258027 chr4B 403258027 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 403253337 403254329 993 1 0.100704934541793 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G186500 chr4B_406461370 chr4B 406461370 T T A A 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 406457286 406461720 4435 1 0.0225479143179256 RFvsST 235724 673534552 673298829 no 494.799574599122 TraesCS4B01G195100 chr4B_420195661 chr4B 420195661 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 420196942 420197676 735 1 0.136054421768707 RFvsST 235724 673534552 673298829 no 175.085624531334 TraesCS4B01G195900 chr4B_422036199 chr4B 422036199 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 422030176 422034573 4398 1 0.022737608003638 RFvsST 235724 673534552 673298829 no 329.520033487132 TraesCS4B01G199000 chr4B_427511676 chr4B 427511676 G G A A 4 missense_variant MODERATE transcript unique_Triplet 427503869 427513121 9253 1 0.0108073057386793 RFvsST 235724 673534552 673298829 no 288.480698818952 TraesCS4B01G200800 chr4B_428965065 chr4B 428965065 G G A A 4 missense_variant MODERATE transcript unique_Triplet 428964857 428965658 802 1 0.124688279301746 RFvsST 235724 673534552 673298829 no 999.142695722563 TraesCS4B01G201500 chr4B_431789175 chr4B 431789175 G G A A 4 missense_variant MODERATE transcript unique_Triplet 431788850 431794482 5633 1 0.0177525297354873 RFvsST 235724 673534552 673298829 no 554.046033398228 TraesCS4B01G207700 chr4B_443817298 chr4B 443817298 A A G G 4 missense_variant MODERATE transcript unique_Triplet 443814399 443817776 3378 1 0.029603315571344 RFvsST 235724 673534552 673298829 no 421.602011407084 TraesCS4B01G209700 chr4B_447441485 chr4B 447441485 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 447441430 447450315 8886 1 0.0112536574386676 RFvsST 235724 673534552 673298829 no 345.001200223231 TraesCS4B01G213600 chr4B_452720584 chr4B 452720584 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 452720650 452723349 2700 1 0.037037037037037 RFvsST 235724 673534552 673298829 no 804.972737184458 TraesCS4B01G220500 chr4B_463709616 chr4B 463709616 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 463709839 463714746 4908 1 0.0203748981255094 RFvsST 235724 673534552 673298829 no 468.726219368373 TraesCS4B01G222700 chr4B_467271679 chr4B 467271679 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 467271337 467278180 6844 1 0.0146113383985973 RFvsST 235724 673534552 673298829 no 750.939801557609 TraesCS4B01G224200 chr4B_469015107 chr4B 469015107 G G A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 469011404 469016751 5348 2 0.037397157816006 RFvsST 235724 673534552 673298829 no 242.752202872047 TraesCS4B01G224200 chr4B_469016722 chr4B 469016722 G G T T 4 missense_variant MODERATE transcript unique_Triplet 469011404 469016751 5348 2 0.037397157816006 RFvsST 235724 673534552 673298829 no 242.752202872047 TraesCS4B01G225500 chr4B_472134031 chr4B 472134031 T T C C 4 synonymous_variant LOW transcript unique_Triplet 472133199 472135124 1926 1 0.0519210799584631 RFvsST 235724 673534552 673298829 no 434.107050456007 TraesCS4B01G229100 chr4B_480050826 chr4B 480050826 C C T T 4 missense_variant MODERATE transcript unique_Triplet 480050006 480054576 4571 1 0.0218770509735288 RFvsST 235724 673534552 673298829 no 49.6890820687743 TraesCS4B01G229500 chr4B_480593848 chr4B 480593848 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 480590359 480593014 2656 1 0.0376506024096386 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G229600 chr4B_480599393 chr4B 480599393 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 480593871 480599317 5447 1 0.0183587295759133 RFvsST 235724 673534552 673298829 no 153.381835300556 TraesCS4B01G230000 chr4B_480924000 chr4B 480924000 T T C C 4 synonymous_variant LOW transcript unique_Triplet 480923883 480925697 1815 1 0.0550964187327824 RFvsST 235724 673534552 673298829 no 112.819432337754 TraesCS4B01G230400 chr4B_481576195 chr4B 481576195 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 481576340 481578030 1691 1 0.0591366055588409 RFvsST 235724 673534552 673298829 no 44.0472378956075 TraesCS4B01G231300 chr4B_482986525 chr4B 482986525 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482983517 482984547 1031 5 0.484966052376334 RFvsST 235724 673534552 673298829 no 315.520559019253 TraesCS4B01G231300 chr4B_482985577 chr4B 482985577 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482983517 482984547 1031 5 0.484966052376334 RFvsST 235724 673534552 673298829 no 315.520559019253 TraesCS4B01G231300 chr4B_482988627 chr4B 482988627 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482983517 482984547 1031 5 0.484966052376334 RFvsST 235724 673534552 673298829 no 315.520559019253 TraesCS4B01G231300 chr4B_482986522 chr4B 482986522 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482983517 482984547 1031 5 0.484966052376334 RFvsST 235724 673534552 673298829 no 315.520559019253 TraesCS4B01G231300 chr4B_482988482 chr4B 482988482 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 482983517 482984547 1031 5 0.484966052376334 RFvsST 235724 673534552 673298829 no 315.520559019253 TraesCS4B01G231400 chr4B_483333599 chr4B 483333599 C C T T 4 missense_variant MODERATE transcript unique_Triplet 483333376 483335441 2066 1 0.0484027105517909 RFvsST 235724 673534552 673298829 no 50.8015256493315 TraesCS4B01G232100 chr4B_483757109 chr4B 483757109 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 483759576 483763137 3562 4 0.112296462661426 RFvsST 235724 673534552 673298829 no 72.6538517533272 TraesCS4B01G232100 chr4B_483755728 chr4B 483755728 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 483759576 483763137 3562 4 0.112296462661426 RFvsST 235724 673534552 673298829 no 72.6538517533272 TraesCS4B01G232100 chr4B_483755841 chr4B 483755841 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 483759576 483763137 3562 4 0.112296462661426 RFvsST 235724 673534552 673298829 no 72.6538517533272 TraesCS4B01G232100 chr4B_483756166 chr4B 483756166 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 483759576 483763137 3562 4 0.112296462661426 RFvsST 235724 673534552 673298829 no 72.6538517533272 TraesCS4B01G232200 chr4B_483766431 chr4B 483766431 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 483763854 483765413 1560 1 0.0641025641025641 RFvsST 235724 673534552 673298829 no 7.48481112641154 TraesCS4B01G238800 chr4B_495597492 chr4B 495597492 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 495591377 495596795 5419 1 0.0184535892231039 RFvsST 235724 673534552 673298829 no 110.579977900789 TraesCS4B01G239000 chr4B_496242732 chr4B 496242732 G G A A 4 missense_variant MODERATE transcript non_Triplet 496241828 496243194 1367 5 0.365764447695684 RFvsST 235724 673534552 673298829 no 223.962421406365 TraesCS4B01G239000 chr4B_496242069 chr4B 496242069 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 496241828 496243194 1367 5 0.365764447695684 RFvsST 235724 673534552 673298829 no 223.962421406365 TraesCS4B01G239000 chr4B_496242058 chr4B 496242058 A A C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 496241828 496243194 1367 5 0.365764447695684 RFvsST 235724 673534552 673298829 no 223.962421406365 TraesCS4B01G239000 chr4B_496242972 chr4B 496242972 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 496241828 496243194 1367 5 0.365764447695684 RFvsST 235724 673534552 673298829 no 223.962421406365 TraesCS4B01G239000 chr4B_496242748 chr4B 496242748 C C T T 4 missense_variant MODERATE transcript non_Triplet 496241828 496243194 1367 5 0.365764447695684 RFvsST 235724 673534552 673298829 no 223.962421406365 TraesCS4B01G239500 chr4B_496547432 chr4B 496547432 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 496547632 496550131 2500 4 0.16 RFvsST 235724 673534552 673298829 no 1.36887622979669 TraesCS4B01G239500 chr4B_496547698 chr4B 496547698 C C T T 4 missense_variant MODERATE transcript unique_Triplet 496547632 496550131 2500 4 0.16 RFvsST 235724 673534552 673298829 no 1.36887622979669 TraesCS4B01G239500 chr4B_496547521 chr4B 496547521 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 496547632 496550131 2500 4 0.16 RFvsST 235724 673534552 673298829 no 1.36887622979669 TraesCS4B01G239500 chr4B_496550104 chr4B 496550104 C C G G 4 missense_variant MODERATE transcript unique_Triplet 496547632 496550131 2500 4 0.16 RFvsST 235724 673534552 673298829 no 1.36887622979669 TraesCS4B01G239700 chr4B_497229321 chr4B 497229321 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 497229997 497232782 2786 2 0.0717875089734386 RFvsST 235724 673534552 673298829 no 183.448927773129 TraesCS4B01G239700 chr4B_497229357 chr4B 497229357 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 497229997 497232782 2786 2 0.0717875089734386 RFvsST 235724 673534552 673298829 no 183.448927773129 TraesCS4B01G239900 chr4B_497551966 chr4B 497551966 G G C C 4 synonymous_variant LOW transcript unique_Triplet 497551385 497554460 3076 2 0.0650195058517555 RFvsST 235724 673534552 673298829 no 741.458518270074 TraesCS4B01G239900 chr4B_497553795 chr4B 497553795 G G A A 4 missense_variant MODERATE transcript unique_Triplet 497551385 497554460 3076 2 0.0650195058517555 RFvsST 235724 673534552 673298829 no 741.458518270074 TraesCS4B01G240100 chr4B_497865224 chr4B 497865224 C C T T 4 synonymous_variant LOW transcript unique_Triplet 497862671 497867930 5260 1 0.0190114068441065 RFvsST 235724 673534552 673298829 no 568.620844381015 TraesCS4B01G240300 chr4B_498393218 chr4B 498393218 T T C C 4 missense_variant MODERATE transcript unique_Triplet 498377942 498395068 17127 2 0.0116774683248672 RFvsST 235724 673534552 673298829 no 56.4489530720154 TraesCS4B01G240300 chr4B_498394879 chr4B 498394879 G G C C 4 synonymous_variant LOW transcript unique_Triplet 498377942 498395068 17127 2 0.0116774683248672 RFvsST 235724 673534552 673298829 no 56.4489530720154 TraesCS4B01G240800 chr4B_499846088 chr4B 499846088 C C T T 4 missense_variant MODERATE transcript unique_Triplet 499840933 499849746 8814 4 0.045382346267302 RFvsST 235724 673534552 673298829 no 70.2016250825782 TraesCS4B01G240800 chr4B_499847103 chr4B 499847103 G G C C 4 missense_variant MODERATE transcript unique_Triplet 499840933 499849746 8814 4 0.045382346267302 RFvsST 235724 673534552 673298829 no 70.2016250825782 TraesCS4B01G240800 chr4B_499849204 chr4B 499849204 A A G G 4 synonymous_variant LOW transcript unique_Triplet 499840933 499849746 8814 4 0.045382346267302 RFvsST 235724 673534552 673298829 no 70.2016250825782 TraesCS4B01G240800 chr4B_499849183 chr4B 499849183 C C T T 4 synonymous_variant LOW transcript unique_Triplet 499840933 499849746 8814 4 0.045382346267302 RFvsST 235724 673534552 673298829 no 70.2016250825782 TraesCS4B01G241100 chr4B_500052947 chr4B 500052947 G G C C 4 synonymous_variant LOW transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053651 chr4B 500053651 A A G G 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053306 chr4B 500053306 T T G G 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500052817 chr4B 500052817 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053605 chr4B 500053605 C C T T 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053224 chr4B 500053224 G G C C 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500052946 chr4B 500052946 C C A A 4 stop_gained HIGH transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500052808 chr4B 500052808 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053746 chr4B 500053746 G G A A 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500054222 chr4B 500054222 G G C C 4 synonymous_variant LOW transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053280 chr4B 500053280 C C T T 4 synonymous_variant LOW transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053796 chr4B 500053796 A A G G 4 synonymous_variant LOW transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G241100 chr4B_500053731 chr4B 500053731 G G A A 4 missense_variant MODERATE transcript unique_Triplet 500052828 500054399 1572 13 0.826972010178117 RFvsST 235724 673534552 673298829 no 575.914434235991 TraesCS4B01G242600 chr4B_502403128 chr4B 502403128 G G T T 4 missense_variant MODERATE transcript unique_Triplet 502402077 502410845 8769 2 0.0228076177443266 RFvsST 235724 673534552 673298829 no 216.634233491368 TraesCS4B01G242600 chr4B_502403129 chr4B 502403129 G G T T 4 missense_variant MODERATE transcript unique_Triplet 502402077 502410845 8769 2 0.0228076177443266 RFvsST 235724 673534552 673298829 no 216.634233491368 TraesCS4B01G243000 chr4B_503559280 chr4B 503559280 T T G G 4 missense_variant MODERATE transcript unique_Triplet 503558345 503560221 1877 1 0.053276505061268 RFvsST 235724 673534552 673298829 no 171.049659823748 TraesCS4B01G244500 chr4B_506146445 chr4B 506146445 G G A A 4 synonymous_variant LOW transcript unique_Triplet 506144390 506148621 4232 1 0.0236294896030246 RFvsST 235724 673534552 673298829 no 432.276894409945 TraesCS4B01G247300 chr4B_512162076 chr4B 512162076 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 512162163 512166271 4109 1 0.0243368216110976 RFvsST 235724 673534552 673298829 no 92.7595031012052 TraesCS4B01G250800 chr4B_517213232 chr4B 517213232 C C T T 4 missense_variant MODERATE transcript unique_Triplet 517213218 517215914 2697 1 0.0370782350760104 RFvsST 235724 673534552 673298829 no 187.46269151531 TraesCS4B01G253200 chr4B_519046355 chr4B 519046355 C C G G 4 missense_variant MODERATE transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519045194 chr4B 519045194 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519045596 chr4B 519045596 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519046702 chr4B 519046702 C C A A 4 missense_variant MODERATE transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519048645 chr4B 519048645 A A G G 4 synonymous_variant LOW transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519049108 chr4B 519049108 T T C C 4 missense_variant MODERATE transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253200 chr4B_519049913 chr4B 519049913 G G A A 4 missense_variant MODERATE transcript unique_Triplet 519046283 519051734 5452 7 0.128393250183419 RFvsST 235724 673534552 673298829 no 282.757288852468 TraesCS4B01G253300 chr4B_519251997 chr4B 519251997 A A C C 4 missense_variant MODERATE transcript unique_Triplet 519248726 519258114 9389 4 0.0426030461177974 RFvsST 235724 673534552 673298829 no 388.928567662494 TraesCS4B01G253300 chr4B_519249015 chr4B 519249015 T T C C 4 missense_variant MODERATE transcript unique_Triplet 519248726 519258114 9389 4 0.0426030461177974 RFvsST 235724 673534552 673298829 no 388.928567662494 TraesCS4B01G253300 chr4B_519257712 chr4B 519257712 A A C C 4 missense_variant MODERATE transcript unique_Triplet 519248726 519258114 9389 4 0.0426030461177974 RFvsST 235724 673534552 673298829 no 388.928567662494 TraesCS4B01G253300 chr4B_519255598 chr4B 519255598 A A T T 4 missense_variant MODERATE transcript unique_Triplet 519248726 519258114 9389 4 0.0426030461177974 RFvsST 235724 673534552 673298829 no 388.928567662494 TraesCS4B01G254300 chr4B_519607990 chr4B 519607990 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254300 chr4B_519607936 chr4B 519607936 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254300 chr4B_519608997 chr4B 519608997 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254300 chr4B_519608399 chr4B 519608399 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254300 chr4B_519606539 chr4B 519606539 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254300 chr4B_519606498 chr4B 519606498 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 519606232 519609269 3038 6 0.197498354180382 RFvsST 235724 673534552 673298829 no 169.467671583391 TraesCS4B01G254400 chr4B_519789852 chr4B 519789852 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 519789305 519794687 5383 2 0.0371540033438603 RFvsST 235724 673534552 673298829 no 91.241474977007 TraesCS4B01G254400 chr4B_519794533 chr4B 519794533 G G C C 4 missense_variant MODERATE transcript unique_Triplet 519789305 519794687 5383 2 0.0371540033438603 RFvsST 235724 673534552 673298829 no 91.241474977007 TraesCS4B01G254800 chr4B_520211547 chr4B 520211547 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 520209568 520214702 5135 2 0.0389483933787731 RFvsST 235724 673534552 673298829 no 95.2551499721978 TraesCS4B01G254800 chr4B_520214509 chr4B 520214509 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 520209568 520214702 5135 2 0.0389483933787731 RFvsST 235724 673534552 673298829 no 95.2551499721978 TraesCS4B01G254900 chr4B_520221801 chr4B 520221801 T T C C 4 missense_variant MODERATE transcript unique_Triplet 520219526 520222243 2718 1 0.0367917586460633 RFvsST 235724 673534552 673298829 no 23.8449517093797 TraesCS4B01G255400 chr4B_520240371 chr4B 520240371 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 520240066 520242140 2075 1 0.0481927710843373 RFvsST 235724 673534552 673298829 no 169.374578630007 TraesCS4B01G258000 chr4B_524011079 chr4B 524011079 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 524005454 524010864 5411 1 0.0184808722971724 RFvsST 235724 673534552 673298829 no 447.487869372426 TraesCS4B01G271800 chr4B_548120966 chr4B 548120966 A A G G 4 synonymous_variant LOW transcript unique_Triplet 548120604 548121236 633 5 0.789889415481832 RFvsST 235724 673534552 673298829 no 220.744252026217 TraesCS4B01G271800 chr4B_548120969 chr4B 548120969 T T C C 4 synonymous_variant LOW transcript unique_Triplet 548120604 548121236 633 5 0.789889415481832 RFvsST 235724 673534552 673298829 no 220.744252026217 TraesCS4B01G271800 chr4B_548120906 chr4B 548120906 C C G G 4 synonymous_variant LOW transcript unique_Triplet 548120604 548121236 633 5 0.789889415481832 RFvsST 235724 673534552 673298829 no 220.744252026217 TraesCS4B01G271800 chr4B_548121101 chr4B 548121101 T T G G 4 synonymous_variant LOW transcript unique_Triplet 548120604 548121236 633 5 0.789889415481832 RFvsST 235724 673534552 673298829 no 220.744252026217 TraesCS4B01G271800 chr4B_548121313 chr4B 548121313 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 548120604 548121236 633 5 0.789889415481832 RFvsST 235724 673534552 673298829 no 220.744252026217 TraesCS4B01G272200 chr4B_548863371 chr4B 548863371 C C A A 4 missense_variant MODERATE transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548862947 chr4B 548862947 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548861789 chr4B 548861789 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548863289 chr4B 548863289 G G A A 4 missense_variant MODERATE transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548861624 chr4B 548861624 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548863742 chr4B 548863742 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548862126 chr4B 548862126 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548864402 chr4B 548864402 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548863373 chr4B 548863373 C C G G 4 missense_variant MODERATE transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548861003 chr4B 548861003 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272200 chr4B_548862990 chr4B 548862990 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 548863051 548863659 609 11 1.80623973727422 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G272300 chr4B_549131963 chr4B 549131963 A A G G 4 synonymous_variant LOW transcript non_Triplet 549130724 549134605 3882 2 0.0515198351365276 RFvsST 235724 673534552 673298829 no 78.2627070958129 TraesCS4B01G272300 chr4B_549139289 chr4B 549139289 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 549130724 549134605 3882 2 0.0515198351365276 RFvsST 235724 673534552 673298829 no 78.2627070958129 TraesCS4B01G272500 chr4B_550394720 chr4B 550394720 C C T T 4 missense_variant MODERATE transcript unique_Triplet 550393779 550398073 4295 1 0.0232828870779977 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G273400 chr4B_551069228 chr4B 551069228 A A T T 4 missense_variant MODERATE transcript unique_Triplet 551065055 551070651 5597 3 0.0536001429337145 RFvsST 235724 673534552 673298829 no 103.818999972175 TraesCS4B01G273400 chr4B_551070207 chr4B 551070207 T T A A 4 missense_variant MODERATE transcript unique_Triplet 551065055 551070651 5597 3 0.0536001429337145 RFvsST 235724 673534552 673298829 no 103.818999972175 TraesCS4B01G273400 chr4B_551070522 chr4B 551070522 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 551065055 551070651 5597 3 0.0536001429337145 RFvsST 235724 673534552 673298829 no 103.818999972175 TraesCS4B01G273500 chr4B_551075661 chr4B 551075661 C C T T 4 missense_variant MODERATE transcript unique_Triplet 551075295 551076554 1260 1 0.0793650793650794 RFvsST 235724 673534552 673298829 no 112.938737694072 TraesCS4B01G274200 chr4B_552018152 chr4B 552018152 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 552014074 552017871 3798 4 0.105318588730911 RFvsST 235724 673534552 673298829 no 262.150527812664 TraesCS4B01G274200 chr4B_552014510 chr4B 552014510 G G A A 4 missense_variant MODERATE transcript unique_Triplet 552014074 552017871 3798 4 0.105318588730911 RFvsST 235724 673534552 673298829 no 262.150527812664 TraesCS4B01G274200 chr4B_552014043 chr4B 552014043 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 552014074 552017871 3798 4 0.105318588730911 RFvsST 235724 673534552 673298829 no 262.150527812664 TraesCS4B01G274200 chr4B_552014073 chr4B 552014073 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 552014074 552017871 3798 4 0.105318588730911 RFvsST 235724 673534552 673298829 no 262.150527812664 TraesCS4B01G274400 chr4B_552027915 chr4B 552027915 T T C C 4 missense_variant MODERATE transcript non_Triplet 552027757 552028452 696 1 0.14367816091954 RFvsST 235724 673534552 673298829 no 105.347129835527 TraesCS4B01G274500 chr4B_552033655 chr4B 552033655 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 552029826 552033714 3889 1 0.0257135510413988 RFvsST 235724 673534552 673298829 no 2602.08121009858 TraesCS4B01G276200 chr4B_555933347 chr4B 555933347 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 555925225 555933113 7889 1 0.012675877804538 RFvsST 235724 673534552 673298829 no 187.156484552347 TraesCS4B01G278100 chr4B_560014873 chr4B 560014873 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 560012716 560014885 2170 3 0.138248847926267 RFvsST 235724 673534552 673298829 no 280.415168498579 TraesCS4B01G278100 chr4B_560014632 chr4B 560014632 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 560012716 560014885 2170 3 0.138248847926267 RFvsST 235724 673534552 673298829 no 280.415168498579 TraesCS4B01G278100 chr4B_560014246 chr4B 560014246 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 560012716 560014885 2170 3 0.138248847926267 RFvsST 235724 673534552 673298829 no 280.415168498579 TraesCS4B01G278500 chr4B_561385712 chr4B 561385712 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278500 chr4B_561385703 chr4B 561385703 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278500 chr4B_561387047 chr4B 561387047 T T A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278500 chr4B_561386769 chr4B 561386769 C C T T 4 missense_variant MODERATE transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278500 chr4B_561386647 chr4B 561386647 C C G G 4 synonymous_variant LOW transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278500 chr4B_561386646 chr4B 561386646 T T C C 4 missense_variant MODERATE transcript unique_Triplet 561385814 561386898 1085 6 0.552995391705069 RFvsST 235724 673534552 673298829 no 183.467703225362 TraesCS4B01G278900 chr4B_562349255 chr4B 562349255 G G T T 4 synonymous_variant LOW transcript unique_Triplet 562349013 562353047 4035 2 0.0495662949194548 RFvsST 235724 673534552 673298829 no 377.916914463266 TraesCS4B01G278900 chr4B_562349185 chr4B 562349185 C C T T 4 missense_variant MODERATE transcript unique_Triplet 562349013 562353047 4035 2 0.0495662949194548 RFvsST 235724 673534552 673298829 no 377.916914463266 TraesCS4B01G279800 chr4B_562707505 chr4B 562707505 G G A A 4 missense_variant MODERATE transcript unique_Triplet 562704899 562707602 2704 3 0.11094674556213 RFvsST 235724 673534552 673298829 no 75.4198661784072 TraesCS4B01G279800 chr4B_562707222 chr4B 562707222 G G A A 4 missense_variant MODERATE transcript unique_Triplet 562704899 562707602 2704 3 0.11094674556213 RFvsST 235724 673534552 673298829 no 75.4198661784072 TraesCS4B01G279800 chr4B_562706974 chr4B 562706974 G G A A 4 synonymous_variant LOW transcript unique_Triplet 562704899 562707602 2704 3 0.11094674556213 RFvsST 235724 673534552 673298829 no 75.4198661784072 TraesCS4B01G280000 chr4B_562881849 chr4B 562881849 T T C C 4 synonymous_variant LOW transcript unique_Triplet 562880284 562882743 2460 5 0.203252032520325 RFvsST 235724 673534552 673298829 no 212.753080496393 TraesCS4B01G280000 chr4B_562883636 chr4B 562883636 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 562880284 562882743 2460 5 0.203252032520325 RFvsST 235724 673534552 673298829 no 212.753080496393 TraesCS4B01G280000 chr4B_562880922 chr4B 562880922 C C T T 4 synonymous_variant LOW transcript unique_Triplet 562880284 562882743 2460 5 0.203252032520325 RFvsST 235724 673534552 673298829 no 212.753080496393 TraesCS4B01G280000 chr4B_562880847 chr4B 562880847 G G A A 4 synonymous_variant LOW transcript unique_Triplet 562880284 562882743 2460 5 0.203252032520325 RFvsST 235724 673534552 673298829 no 212.753080496393 TraesCS4B01G280000 chr4B_562877817 chr4B 562877817 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 562880284 562882743 2460 5 0.203252032520325 RFvsST 235724 673534552 673298829 no 212.753080496393 TraesCS4B01G280300 chr4B_562933293 chr4B 562933293 C C G G 4 missense_variant MODERATE transcript unique_Triplet 562933223 562939206 5984 1 0.0167112299465241 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G280600 chr4B_563627247 chr4B 563627247 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 563620724 563626048 5325 1 0.0187793427230047 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G280700 chr4B_563630104 chr4B 563630104 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 563627267 563629115 1849 4 0.216333153055706 RFvsST 235724 673534552 673298829 no 1099.01656950722 TraesCS4B01G280700 chr4B_563628994 chr4B 563628994 A A G G 4 missense_variant MODERATE transcript unique_Triplet 563627267 563629115 1849 4 0.216333153055706 RFvsST 235724 673534552 673298829 no 1099.01656950722 TraesCS4B01G280700 chr4B_563629065 chr4B 563629065 G G A A 4 synonymous_variant LOW transcript unique_Triplet 563627267 563629115 1849 4 0.216333153055706 RFvsST 235724 673534552 673298829 no 1099.01656950722 TraesCS4B01G280700 chr4B_563628520 chr4B 563628520 C C T T 4 missense_variant MODERATE transcript unique_Triplet 563627267 563629115 1849 4 0.216333153055706 RFvsST 235724 673534552 673298829 no 1099.01656950722 TraesCS4B01G280800 chr4B_563786382 chr4B 563786382 A A G G 4 synonymous_variant LOW transcript non_Triplet 563785408 563786427 1020 2 0.196078431372549 RFvsST 235724 673534552 673298829 no 15.0605282083828 TraesCS4B01G280800 chr4B_563785338 chr4B 563785338 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 563785408 563786427 1020 2 0.196078431372549 RFvsST 235724 673534552 673298829 no 15.0605282083828 TraesCS4B01G281200 chr4B_564223839 chr4B 564223839 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564223159 564223788 630 2 0.317460317460317 RFvsST 235724 673534552 673298829 no 570.849284532767 TraesCS4B01G281200 chr4B_564222961 chr4B 564222961 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 564223159 564223788 630 2 0.317460317460317 RFvsST 235724 673534552 673298829 no 570.849284532767 TraesCS4B01G281400 chr4B_564393308 chr4B 564393308 G G A A 4 synonymous_variant LOW transcript unique_Triplet 564383823 564395728 11906 5 0.0419956324542248 RFvsST 235724 673534552 673298829 no 894.497129366957 TraesCS4B01G281400 chr4B_564394563 chr4B 564394563 G G A A 4 missense_variant MODERATE transcript unique_Triplet 564383823 564395728 11906 5 0.0419956324542248 RFvsST 235724 673534552 673298829 no 894.497129366957 TraesCS4B01G281400 chr4B_564394207 chr4B 564394207 G G T T 4 missense_variant MODERATE transcript unique_Triplet 564383823 564395728 11906 5 0.0419956324542248 RFvsST 235724 673534552 673298829 no 894.497129366957 TraesCS4B01G281400 chr4B_564393463 chr4B 564393463 G G A A 4 missense_variant MODERATE transcript unique_Triplet 564383823 564395728 11906 5 0.0419956324542248 RFvsST 235724 673534552 673298829 no 894.497129366957 TraesCS4B01G281400 chr4B_564388305 chr4B 564388305 A A T T 4 synonymous_variant LOW transcript unique_Triplet 564383823 564395728 11906 5 0.0419956324542248 RFvsST 235724 673534552 673298829 no 894.497129366957 TraesCS4B01G282100 chr4B_565092815 chr4B 565092815 C C G G 4 synonymous_variant LOW transcript unique_Triplet 565092269 565094325 2057 1 0.0486144871171609 RFvsST 235724 673534552 673298829 no 202.759333149792 TraesCS4B01G283200 chr4B_566597592 chr4B 566597592 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 566594535 566597566 3032 1 0.0329815303430079 RFvsST 235724 673534552 673298829 no 13.5527956991509 TraesCS4B01G283700 chr4B_567173872 chr4B 567173872 A A C C 4 synonymous_variant LOW transcript unique_Triplet 567173630 567176184 2555 4 0.156555772994129 RFvsST 235724 673534552 673298829 no 77.721370137295 TraesCS4B01G283700 chr4B_567173851 chr4B 567173851 T T C C 4 synonymous_variant LOW transcript unique_Triplet 567173630 567176184 2555 4 0.156555772994129 RFvsST 235724 673534552 673298829 no 77.721370137295 TraesCS4B01G283700 chr4B_567173809 chr4B 567173809 G G A A 4 synonymous_variant LOW transcript unique_Triplet 567173630 567176184 2555 4 0.156555772994129 RFvsST 235724 673534552 673298829 no 77.721370137295 TraesCS4B01G283700 chr4B_567176302 chr4B 567176302 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 567173630 567176184 2555 4 0.156555772994129 RFvsST 235724 673534552 673298829 no 77.721370137295 TraesCS4B01G286000 chr4B_569630673 chr4B 569630673 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 569628760 569630327 1568 1 0.0637755102040816 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G286600 chr4B_570144599 chr4B 570144599 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 570138452 570140057 1606 1 0.062266500622665 RFvsST 235724 673534552 673298829 no 46.1295812302556 TraesCS4B01G286700 chr4B_570150758 chr4B 570150758 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286700 chr4B_570148243 chr4B 570148243 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286700 chr4B_570145554 chr4B 570145554 T T C C 4 missense_variant MODERATE transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286700 chr4B_570145138 chr4B 570145138 T T C C 4 synonymous_variant LOW transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286700 chr4B_570150623 chr4B 570150623 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286700 chr4B_570150792 chr4B 570150792 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570141651 570146481 4831 6 0.124197888635893 RFvsST 235724 673534552 673298829 no 96.358095853406 TraesCS4B01G286900 chr4B_570240893 chr4B 570240893 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 570240836 570243125 2290 1 0.0436681222707424 RFvsST 235724 673534552 673298829 no 835.618600044689 TraesCS4B01G287100 chr4B_570348302 chr4B 570348302 C C T T 4 missense_variant MODERATE transcript unique_Triplet 570347982 570348347 366 1 0.273224043715847 RFvsST 235724 673534552 673298829 no 39.281747348178 TraesCS4B01G287200 chr4B_570736227 chr4B 570736227 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 570732523 570735634 3112 3 0.096401028277635 RFvsST 235724 673534552 673298829 no 17.5042050149887 TraesCS4B01G287200 chr4B_570735730 chr4B 570735730 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 570732523 570735634 3112 3 0.096401028277635 RFvsST 235724 673534552 673298829 no 17.5042050149887 TraesCS4B01G287200 chr4B_570736275 chr4B 570736275 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 570732523 570735634 3112 3 0.096401028277635 RFvsST 235724 673534552 673298829 no 17.5042050149887 TraesCS4B01G287300 chr4B_570740016 chr4B 570740016 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570736283 570739792 3510 3 0.0854700854700855 RFvsST 235724 673534552 673298829 no 100.295831071741 TraesCS4B01G287300 chr4B_570738199 chr4B 570738199 C C T T 4 missense_variant MODERATE transcript unique_Triplet 570736283 570739792 3510 3 0.0854700854700855 RFvsST 235724 673534552 673298829 no 100.295831071741 TraesCS4B01G287300 chr4B_570739873 chr4B 570739873 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570736283 570739792 3510 3 0.0854700854700855 RFvsST 235724 673534552 673298829 no 100.295831071741 TraesCS4B01G287800 chr4B_571473739 chr4B 571473739 G G T T 4 synonymous_variant LOW transcript unique_Triplet 571469011 571473792 4782 1 0.0209117524048515 RFvsST 235724 673534552 673298829 no 1499.8302391228 TraesCS4B01G288100 chr4B_573275605 chr4B 573275605 T T C C 4 missense_variant MODERATE transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G288100 chr4B_573276005 chr4B 573276005 A A G G 4 missense_variant MODERATE transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G288100 chr4B_573275601 chr4B 573275601 G G A A 4 missense_variant MODERATE transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G288100 chr4B_573273206 chr4B 573273206 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G288100 chr4B_573275528 chr4B 573275528 C C T T 4 synonymous_variant LOW transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G288100 chr4B_573273433 chr4B 573273433 G G C C 4 missense_variant MODERATE transcript unique_Triplet 573273300 573276188 2889 6 0.207684319833853 RFvsST 235724 673534552 673298829 no 108.990999635276 TraesCS4B01G289300 chr4B_574225546 chr4B 574225546 C C T T 4 synonymous_variant LOW transcript unique_Triplet 574223402 574227031 3630 1 0.0275482093663912 RFvsST 235724 673534552 673298829 no 127.32600578764 TraesCS4B01G289600 chr4B_574446468 chr4B 574446468 G G C C 4 missense_variant MODERATE transcript unique_Triplet 574442287 574447047 4761 2 0.0420079815164881 RFvsST 235724 673534552 673298829 no 38.8309707872859 TraesCS4B01G289600 chr4B_574446532 chr4B 574446532 G G A A 4 missense_variant MODERATE transcript unique_Triplet 574442287 574447047 4761 2 0.0420079815164881 RFvsST 235724 673534552 673298829 no 38.8309707872859 TraesCS4B01G290000 chr4B_574950326 chr4B 574950326 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 574940598 574945500 4903 3 0.0611870283499898 RFvsST 235724 673534552 673298829 no 60.7172782148943 TraesCS4B01G290000 chr4B_574941078 chr4B 574941078 G G A A 4 missense_variant MODERATE transcript unique_Triplet 574940598 574945500 4903 3 0.0611870283499898 RFvsST 235724 673534552 673298829 no 60.7172782148943 TraesCS4B01G290000 chr4B_574950327 chr4B 574950327 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 574940598 574945500 4903 3 0.0611870283499898 RFvsST 235724 673534552 673298829 no 60.7172782148943 TraesCS4B01G290200 chr4B_574950598 chr4B 574950598 A A G G 4 synonymous_variant LOW transcript unique_Triplet 574950538 574953438 2901 1 0.0344708721130645 RFvsST 235724 673534552 673298829 no 352.197823857416 TraesCS4B01G290400 chr4B_575527507 chr4B 575527507 A A G G 4 synonymous_variant LOW transcript non_Triplet 575526003 575527657 1655 1 0.0604229607250755 RFvsST 235724 673534552 673298829 no 13.3791859144578 TraesCS4B01G290500 chr4B_575608552 chr4B 575608552 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 575608697 575608897 201 2 0.995024875621891 RFvsST 235724 673534552 673298829 no 485.770279265061 TraesCS4B01G290500 chr4B_575608591 chr4B 575608591 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 575608697 575608897 201 2 0.995024875621891 RFvsST 235724 673534552 673298829 no 485.770279265061 TraesCS4B01G290600 chr4B_575622174 chr4B 575622174 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621920 chr4B 575621920 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617765 chr4B 575617765 T T C C 4 missense_variant MODERATE transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620433 chr4B 575620433 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617732 chr4B 575617732 A A G G 4 missense_variant MODERATE transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575619339 chr4B 575619339 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575619474 chr4B 575619474 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617398 chr4B 575617398 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621665 chr4B 575621665 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620443 chr4B 575620443 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621959 chr4B 575621959 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621876 chr4B 575621876 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618703 chr4B 575618703 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617586 chr4B 575617586 A A G G 4 synonymous_variant LOW transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618962 chr4B 575618962 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618665 chr4B 575618665 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575619246 chr4B 575619246 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621903 chr4B 575621903 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575619427 chr4B 575619427 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618062 chr4B 575618062 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617965 chr4B 575617965 G G C C 4 missense_variant MODERATE transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618852 chr4B 575618852 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620959 chr4B 575620959 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618615 chr4B 575618615 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617690 chr4B 575617690 T T C C 4 missense_variant MODERATE transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575617873 chr4B 575617873 A A G G 4 missense_variant MODERATE transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621181 chr4B 575621181 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618345 chr4B 575618345 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621879 chr4B 575621879 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620760 chr4B 575620760 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620509 chr4B 575620509 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620671 chr4B 575620671 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620034 chr4B 575620034 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575620097 chr4B 575620097 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621217 chr4B 575621217 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575621240 chr4B 575621240 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G290600 chr4B_575618012 chr4B 575618012 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 575617402 575618047 646 37 5.72755417956656 RFvsST 235724 673534552 673298829 no 77.0166598470418 TraesCS4B01G291000 chr4B_575779985 chr4B 575779985 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 575777820 575779843 2024 1 0.0494071146245059 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G291200 chr4B_576109539 chr4B 576109539 G G A A 4 synonymous_variant LOW transcript unique_Triplet 576107240 576110180 2941 2 0.0680040802448147 RFvsST 235724 673534552 673298829 no 90.7140939222453 TraesCS4B01G291200 chr4B_576107236 chr4B 576107236 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 576107240 576110180 2941 2 0.0680040802448147 RFvsST 235724 673534552 673298829 no 90.7140939222453 TraesCS4B01G291300 chr4B_576200087 chr4B 576200087 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 576194950 576195600 651 3 0.460829493087558 RFvsST 235724 673534552 673298829 no 374.896762138134 TraesCS4B01G291300 chr4B_576200092 chr4B 576200092 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 576194950 576195600 651 3 0.460829493087558 RFvsST 235724 673534552 673298829 no 374.896762138134 TraesCS4B01G291300 chr4B_576194895 chr4B 576194895 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 576194950 576195600 651 3 0.460829493087558 RFvsST 235724 673534552 673298829 no 374.896762138134 TraesCS4B01G291400 chr4B_576202964 chr4B 576202964 G G A A 4 synonymous_variant LOW transcript unique_Triplet 576200178 576203473 3296 1 0.0303398058252427 RFvsST 235724 673534552 673298829 no 55.0578234453715 TraesCS4B01G291700 chr4B_577000922 chr4B 577000922 T T C C 4 missense_variant MODERATE transcript unique_Triplet 577000639 577003186 2548 1 0.0392464678178964 RFvsST 235724 673534552 673298829 no 169.478454866361 TraesCS4B01G291800 chr4B_577013640 chr4B 577013640 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 577012957 577013550 594 1 0.168350168350168 RFvsST 235724 673534552 673298829 no 435.929096999837 TraesCS4B01G292100 chr4B_577651195 chr4B 577651195 C C G G 4 missense_variant MODERATE transcript unique_Triplet 577651119 577655441 4323 1 0.0231320842007865 RFvsST 235724 673534552 673298829 no 140.347806032676 TraesCS4B01G292400 chr4B_578037085 chr4B 578037085 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 578029415 578033968 4554 1 0.0219587176108915 RFvsST 235724 673534552 673298829 no 38.7751214455666 TraesCS4B01G292700 chr4B_578052963 chr4B 578052963 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 578052482 578052907 426 1 0.234741784037559 RFvsST 235724 673534552 673298829 no 39.8013339570413 TraesCS4B01G292800 chr4B_578071572 chr4B 578071572 G G C C 4 missense_variant MODERATE transcript unique_Triplet 578069993 578071628 1636 1 0.0611246943765281 RFvsST 235724 673534552 673298829 no 122.717725632771 TraesCS4B01G293600 chr4B_579398634 chr4B 579398634 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 579391381 579397973 6593 1 0.0151676020021235 RFvsST 235724 673534552 673298829 no 872.197178509623 TraesCS4B01G293700 chr4B_579406810 chr4B 579406810 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 579405559 579406714 1156 2 0.173010380622837 RFvsST 235724 673534552 673298829 no 143.401967984017 TraesCS4B01G293700 chr4B_579406811 chr4B 579406811 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 579405559 579406714 1156 2 0.173010380622837 RFvsST 235724 673534552 673298829 no 143.401967984017 TraesCS4B01G299100 chr4B_585464291 chr4B 585464291 A A G G 4 synonymous_variant LOW transcript unique_Triplet 585463331 585465135 1805 1 0.0554016620498615 RFvsST 235724 673534552 673298829 no 218.33977762222 TraesCS4B01G299600 chr4B_586070262 chr4B 586070262 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 586069069 586070277 1209 2 0.165425971877585 RFvsST 235724 673534552 673298829 no 170.985958186278 TraesCS4B01G299600 chr4B_586069962 chr4B 586069962 C C A A 4 missense_variant MODERATE transcript non_Triplet 586069069 586070277 1209 2 0.165425971877585 RFvsST 235724 673534552 673298829 no 170.985958186278 TraesCS4B01G302500 chr4B_589175278 chr4B 589175278 T T C C 4 missense_variant MODERATE transcript unique_Triplet 589174397 589179320 4924 1 0.0203086921202275 RFvsST 235724 673534552 673298829 no 1032.62736982127 TraesCS4B01G306300 chr4B_595282849 chr4B 595282849 A A G G 4 synonymous_variant LOW transcript unique_Triplet 595277740 595285792 8053 1 0.0124177325220415 RFvsST 235724 673534552 673298829 no 923.583276472855 TraesCS4B01G307900 chr4B_598261415 chr4B 598261415 T T C C 4 missense_variant MODERATE transcript non_Triplet 598260685 598264089 3405 1 0.0293685756240822 RFvsST 235724 673534552 673298829 no 272.366566747677 TraesCS4B01G310600 chr4B_600673144 chr4B 600673144 A A G G 4 synonymous_variant LOW transcript unique_Triplet 600670579 600673253 2675 1 0.0373831775700935 RFvsST 235724 673534552 673298829 no 117.511549805896 TraesCS4B01G311100 chr4B_601192625 chr4B 601192625 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 601195048 601198424 3377 1 0.0296120817293456 RFvsST 235724 673534552 673298829 no 1607.61019736032 TraesCS4B01G311700 chr4B_601538791 chr4B 601538791 C C T T 4 synonymous_variant LOW transcript unique_Triplet 601518109 601539150 21042 2 0.0095047999239616 RFvsST 235724 673534552 673298829 no 28.7780500648378 TraesCS4B01G311700 chr4B_601514108 chr4B 601514108 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 601518109 601539150 21042 2 0.0095047999239616 RFvsST 235724 673534552 673298829 no 28.7780500648378 TraesCS4B01G312200 chr4B_601931300 chr4B 601931300 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 601930907 601931218 312 2 0.641025641025641 RFvsST 235724 673534552 673298829 no 123.422394914496 TraesCS4B01G312200 chr4B_601930972 chr4B 601930972 C C A A 4 synonymous_variant LOW transcript non_Triplet 601930907 601931218 312 2 0.641025641025641 RFvsST 235724 673534552 673298829 no 123.422394914496 TraesCS4B01G313900 chr4B_604004011 chr4B 604004011 A A G G 4 missense_variant MODERATE transcript non_Triplet 604000910 604005300 4391 1 0.0227738556137554 RFvsST 235724 673534552 673298829 no 382.410851363315 TraesCS4B01G314000 chr4B_604051758 chr4B 604051758 C C T T 4 synonymous_variant LOW transcript unique_Triplet 604048044 604053627 5584 4 0.0716332378223496 RFvsST 235724 673534552 673298829 no 317.407917625678 TraesCS4B01G314000 chr4B_604052473 chr4B 604052473 A A C C 4 missense_variant MODERATE transcript unique_Triplet 604048044 604053627 5584 4 0.0716332378223496 RFvsST 235724 673534552 673298829 no 317.407917625678 TraesCS4B01G314000 chr4B_604051637 chr4B 604051637 T T C C 4 missense_variant MODERATE transcript unique_Triplet 604048044 604053627 5584 4 0.0716332378223496 RFvsST 235724 673534552 673298829 no 317.407917625678 TraesCS4B01G314000 chr4B_604048394 chr4B 604048394 G G A A 4 synonymous_variant LOW transcript unique_Triplet 604048044 604053627 5584 4 0.0716332378223496 RFvsST 235724 673534552 673298829 no 317.407917625678 TraesCS4B01G314600 chr4B_604149025 chr4B 604149025 A A G G 4 synonymous_variant LOW transcript unique_Triplet 604145831 604149165 3335 3 0.0899550224887556 RFvsST 235724 673534552 673298829 no 115.876512215807 TraesCS4B01G314600 chr4B_604149320 chr4B 604149320 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 604145831 604149165 3335 3 0.0899550224887556 RFvsST 235724 673534552 673298829 no 115.876512215807 TraesCS4B01G314600 chr4B_604148302 chr4B 604148302 A A G G 4 missense_variant MODERATE transcript unique_Triplet 604145831 604149165 3335 3 0.0899550224887556 RFvsST 235724 673534552 673298829 no 115.876512215807 TraesCS4B01G315300 chr4B_604696339 chr4B 604696339 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 604682300 604696410 14111 3 0.021260009921338 RFvsST 235724 673534552 673298829 no 18.9793544595245 TraesCS4B01G315300 chr4B_604693248 chr4B 604693248 A A T T 4 synonymous_variant LOW transcript unique_Triplet 604682300 604696410 14111 3 0.021260009921338 RFvsST 235724 673534552 673298829 no 18.9793544595245 TraesCS4B01G315300 chr4B_604682296 chr4B 604682296 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 604682300 604696410 14111 3 0.021260009921338 RFvsST 235724 673534552 673298829 no 18.9793544595245 TraesCS4B01G315400 chr4B_604878579 chr4B 604878579 C C G G 4 missense_variant MODERATE transcript unique_Triplet 604877387 604880326 2940 2 0.0680272108843537 RFvsST 235724 673534552 673298829 no 69.902678100077 TraesCS4B01G315400 chr4B_604878512 chr4B 604878512 A A C C 4 missense_variant MODERATE transcript unique_Triplet 604877387 604880326 2940 2 0.0680272108843537 RFvsST 235724 673534552 673298829 no 69.902678100077 TraesCS4B01G318300 chr4B_608944293 chr4B 608944293 A A G G 4 synonymous_variant LOW transcript unique_Triplet 608942132 608945547 3416 1 0.0292740046838408 RFvsST 235724 673534552 673298829 no 55.4509450168387 TraesCS4B01G320900 chr4B_612213836 chr4B 612213836 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 612209436 612210856 1421 2 0.140745953553835 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G320900 chr4B_612213665 chr4B 612213665 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 612209436 612210856 1421 2 0.140745953553835 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G321000 chr4B_612214564 chr4B 612214564 A A G G 4 synonymous_variant LOW transcript unique_Triplet 612213910 612220621 6712 2 0.0297973778307509 RFvsST 235724 673534552 673298829 no 2.72640392426121 TraesCS4B01G321000 chr4B_612215073 chr4B 612215073 A A G G 4 synonymous_variant LOW transcript unique_Triplet 612213910 612220621 6712 2 0.0297973778307509 RFvsST 235724 673534552 673298829 no 2.72640392426121 TraesCS4B01G321100 chr4B_612250644 chr4B 612250644 T T C C 4 synonymous_variant LOW transcript unique_Triplet 612250551 612253985 3435 3 0.0873362445414847 RFvsST 235724 673534552 673298829 no 38.8397072924721 TraesCS4B01G321100 chr4B_612253957 chr4B 612253957 A A G G 4 missense_variant MODERATE transcript unique_Triplet 612250551 612253985 3435 3 0.0873362445414847 RFvsST 235724 673534552 673298829 no 38.8397072924721 TraesCS4B01G321100 chr4B_612253913 chr4B 612253913 T T C C 4 missense_variant MODERATE transcript unique_Triplet 612250551 612253985 3435 3 0.0873362445414847 RFvsST 235724 673534552 673298829 no 38.8397072924721 TraesCS4B01G321200 chr4B_612262498 chr4B 612262498 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 612260030 612261486 1457 1 0.0686341798215511 RFvsST 235724 673534552 673298829 no 55.0251500191909 TraesCS4B01G321300 chr4B_612284247 chr4B 612284247 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 612262694 612284007 21314 3 0.0140752557004786 RFvsST 235724 673534552 673298829 no 434.020831138814 TraesCS4B01G321300 chr4B_612283082 chr4B 612283082 G G A A 4 missense_variant MODERATE transcript unique_Triplet 612262694 612284007 21314 3 0.0140752557004786 RFvsST 235724 673534552 673298829 no 434.020831138814 TraesCS4B01G321300 chr4B_612284191 chr4B 612284191 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 612262694 612284007 21314 3 0.0140752557004786 RFvsST 235724 673534552 673298829 no 434.020831138814 TraesCS4B01G321400 chr4B_612327223 chr4B 612327223 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 612324280 612325007 728 2 0.274725274725275 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G321400 chr4B_612327389 chr4B 612327389 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 612324280 612325007 728 2 0.274725274725275 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G321500 chr4B_612343203 chr4B 612343203 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 612331810 612339848 8039 1 0.0124393581291205 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G321800 chr4B_612763170 chr4B 612763170 C C T T 4 synonymous_variant LOW transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612759792 chr4B 612759792 T T C C 4 synonymous_variant LOW transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612761648 chr4B 612761648 C C G G 4 missense_variant MODERATE transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612763450 chr4B 612763450 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612763713 chr4B 612763713 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612763807 chr4B 612763807 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G321800 chr4B_612761606 chr4B 612761606 A A G G 4 synonymous_variant LOW transcript unique_Triplet 612759304 612763284 3981 7 0.17583521728209 RFvsST 235724 673534552 673298829 no 52.948085972041 TraesCS4B01G322500 chr4B_613153792 chr4B 613153792 C T C T 3 synonymous_variant LOW transcript unique_Triplet 613150484 613154892 4409 2 0.0453617600362894 RFvsST 235724 673534552 673298829 no 157.10853086746 TraesCS4B01G322500 chr4B_613153798 chr4B 613153798 G A G A 3 synonymous_variant LOW transcript unique_Triplet 613150484 613154892 4409 2 0.0453617600362894 RFvsST 235724 673534552 673298829 no 157.10853086746 TraesCS4B01G326900 chr4B_617766738 chr4B 617766738 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 617765289 617766719 1431 2 0.139762403913347 RFvsST 235724 673534552 673298829 no 53.3225048194753 TraesCS4B01G326900 chr4B_617766832 chr4B 617766832 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 617765289 617766719 1431 2 0.139762403913347 RFvsST 235724 673534552 673298829 no 53.3225048194753 TraesCS4B01G327200 chr4B_618159759 chr4B 618159759 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 618158376 618159486 1111 1 0.09000900090009 RFvsST 235724 673534552 673298829 no 108.507385485343 TraesCS4B01G327800 chr4B_618590963 chr4B 618590963 C T C T 3 synonymous_variant LOW transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G327800 chr4B_618591023 chr4B 618591023 G A G A 3 synonymous_variant LOW transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G327800 chr4B_618593515 chr4B 618593515 A G A G 3 synonymous_variant LOW transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G327800 chr4B_618593727 chr4B 618593727 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G327800 chr4B_618595004 chr4B 618595004 T C T C 3 missense_variant MODERATE transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G327800 chr4B_618592395 chr4B 618592395 T C T C 3 synonymous_variant LOW transcript unique_Triplet 618589256 618595439 6184 6 0.0970245795601552 RFvsST 235724 673534552 673298829 no 293.000044892268 TraesCS4B01G328200 chr4B_619079517 chr4B 619079517 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 619075288 619079876 4589 2 0.0435824798431031 RFvsST 235724 673534552 673298829 no 32.7576354154344 TraesCS4B01G328200 chr4B_619079741 chr4B 619079741 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 619075288 619079876 4589 2 0.0435824798431031 RFvsST 235724 673534552 673298829 no 32.7576354154344 TraesCS4B01G329400 chr4B_620054467 chr4B 620054467 C A C A 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620059122 chr4B 620059122 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620051109 chr4B 620051109 A G A G 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620059209 chr4B 620059209 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620054485 chr4B 620054485 G A G A 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620054839 chr4B 620054839 T C T C 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620051450 chr4B 620051450 T C T C 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329400 chr4B_620054887 chr4B 620054887 T C T C 3 synonymous_variant LOW transcript unique_Triplet 620050430 620054971 4542 8 0.176133861734919 RFvsST 235724 673534552 673298829 no 24.6252440035236 TraesCS4B01G329500 chr4B_620058710 chr4B 620058710 G A G A 3 synonymous_variant LOW transcript non_Triplet 620056385 620060938 4554 5 0.109793588054458 RFvsST 235724 673534552 673298829 no 353.314190359701 TraesCS4B01G329500 chr4B_620055074 chr4B 620055074 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 620056385 620060938 4554 5 0.109793588054458 RFvsST 235724 673534552 673298829 no 353.314190359701 TraesCS4B01G329500 chr4B_620056884 chr4B 620056884 A C A C 3 missense_variant MODERATE transcript non_Triplet 620056385 620060938 4554 5 0.109793588054458 RFvsST 235724 673534552 673298829 no 353.314190359701 TraesCS4B01G329500 chr4B_620055163 chr4B 620055163 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 620056385 620060938 4554 5 0.109793588054458 RFvsST 235724 673534552 673298829 no 353.314190359701 TraesCS4B01G329500 chr4B_620056801 chr4B 620056801 G C G C 3 missense_variant MODERATE transcript non_Triplet 620056385 620060938 4554 5 0.109793588054458 RFvsST 235724 673534552 673298829 no 353.314190359701 TraesCS4B01G336100 chr4B_627941151 chr4B 627941151 A A T T 4 synonymous_variant LOW transcript unique_Triplet 627938867 627944279 5413 1 0.0184740439682246 RFvsST 235724 673534552 673298829 no 156.118061030803 TraesCS4B01G339600 chr4B_632871437 chr4B 632871437 G G A A 4 missense_variant MODERATE transcript unique_Triplet 632863949 632875550 11602 1 0.00861920358558869 RFvsST 235724 673534552 673298829 no 59.9189516182375 TraesCS4B01G342900 chr4B_636782723 chr4B 636782723 A T A T 3 missense_variant MODERATE transcript non_Triplet 636782084 636783170 1087 4 0.367985280588776 RFvsST 235724 673534552 673298829 no 544.830604769098 TraesCS4B01G342900 chr4B_636781981 chr4B 636781981 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 636782084 636783170 1087 4 0.367985280588776 RFvsST 235724 673534552 673298829 no 544.830604769098 TraesCS4B01G342900 chr4B_636782120 chr4B 636782120 A G A G 3 missense_variant MODERATE transcript non_Triplet 636782084 636783170 1087 4 0.367985280588776 RFvsST 235724 673534552 673298829 no 544.830604769098 TraesCS4B01G342900 chr4B_636782600 chr4B 636782600 A G A G 3 missense_variant MODERATE transcript non_Triplet 636782084 636783170 1087 4 0.367985280588776 RFvsST 235724 673534552 673298829 no 544.830604769098 TraesCS4B01G343700 chr4B_637386158 chr4B 637386158 T C T C 3 missense_variant MODERATE transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637387535 chr4B 637387535 C T C T 3 synonymous_variant LOW transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637387486 chr4B 637387486 T C T C 3 missense_variant MODERATE transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637388228 chr4B 637388228 G C G C 3 missense_variant MODERATE transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637387809 chr4B 637387809 C T C T 3 missense_variant MODERATE transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637388027 chr4B 637388027 T C T C 3 synonymous_variant LOW transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637387933 chr4B 637387933 C T C T 3 missense_variant MODERATE transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637387355 chr4B 637387355 G A G A 3 synonymous_variant LOW transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G343700 chr4B_637388270 chr4B 637388270 G T G T 3 synonymous_variant LOW transcript unique_Triplet 637386058 637388507 2450 9 0.36734693877551 RFvsST 235724 673534552 673298829 no 189.317967145346 TraesCS4B01G344500 chr4B_638116120 chr4B 638116120 C T C T 3 missense_variant MODERATE transcript unique_Triplet 638115689 638120475 4787 1 0.0208899101733863 RFvsST 235724 673534552 673298829 no 38.8743716306668 TraesCS4B01G344600 chr4B_638121011 chr4B 638121011 G A G A 3 synonymous_variant LOW transcript unique_Triplet 638120976 638122050 1075 1 0.0930232558139535 RFvsST 235724 673534552 673298829 no 605.417835621231 TraesCS4B01G346900 chr4B_640536260 chr4B 640536260 T T C C 4 missense_variant MODERATE transcript unique_Triplet 640532917 640536498 3582 1 0.0279173646007817 RFvsST 235724 673534552 673298829 no 456.71303790101 TraesCS4B01G348800 chr4B_642194247 chr4B 642194247 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 642191343 642196074 4732 4 0.084530853761623 RFvsST 235724 673534552 673298829 no 643.445362781112 TraesCS4B01G348800 chr4B_642192477 chr4B 642192477 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 642191343 642196074 4732 4 0.084530853761623 RFvsST 235724 673534552 673298829 no 643.445362781112 TraesCS4B01G348800 chr4B_642191439 chr4B 642191439 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 642191343 642196074 4732 4 0.084530853761623 RFvsST 235724 673534552 673298829 no 643.445362781112 TraesCS4B01G348800 chr4B_642194366 chr4B 642194366 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 642191343 642196074 4732 4 0.084530853761623 RFvsST 235724 673534552 673298829 no 643.445362781112 TraesCS4B01G359300 chr4B_649607274 chr4B 649607274 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 649603043 649606860 3818 1 0.0261917234154007 RFvsST 235724 673534552 673298829 no 175.061925911546 TraesCS4B01G359500 chr4B_649830455 chr4B 649830455 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 649835123 649837054 1932 3 0.15527950310559 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G359500 chr4B_649830473 chr4B 649830473 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 649835123 649837054 1932 3 0.15527950310559 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G359500 chr4B_649830661 chr4B 649830661 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 649835123 649837054 1932 3 0.15527950310559 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G360500 chr4B_650632497 chr4B 650632497 G G A A 4 missense_variant MODERATE transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360500 chr4B_650636069 chr4B 650636069 G G A A 4 synonymous_variant LOW transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360500 chr4B_650632819 chr4B 650632819 C G C G 3 missense_variant MODERATE transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360500 chr4B_650635542 chr4B 650635542 C C T T 4 missense_variant MODERATE transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360500 chr4B_650632693 chr4B 650632693 T C T C 3 synonymous_variant LOW transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360500 chr4B_650634242 chr4B 650634242 A G A G 3 missense_variant MODERATE transcript unique_Triplet 650631851 650636595 4745 6 0.126448893572181 RFvsST 235724 673534552 673298829 no 217.601302986724 TraesCS4B01G360700 chr4B_650665477 chr4B 650665477 C C G G 4 missense_variant MODERATE transcript non_Triplet 650665219 650666949 1731 1 0.0577700751010976 RFvsST 235724 673534552 673298829 no 46.8065982615015 TraesCS4B01G360800 chr4B_650683297 chr4B 650683297 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 650683367 650688212 4846 2 0.0412711514651259 RFvsST 235724 673534552 673298829 no 69.2424217323055 TraesCS4B01G360800 chr4B_650683278 chr4B 650683278 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 650683367 650688212 4846 2 0.0412711514651259 RFvsST 235724 673534552 673298829 no 69.2424217323055 TraesCS4B01G361000 chr4B_650696262 chr4B 650696262 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650696765 chr4B 650696765 C T C T 3 missense_variant MODERATE transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650696804 chr4B 650696804 G G C C 4 missense_variant MODERATE transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650696996 chr4B 650696996 G G C C 4 synonymous_variant LOW transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650697034 chr4B 650697034 C C T T 4 missense_variant MODERATE transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650697146 chr4B 650697146 A A C C 4 synonymous_variant LOW transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650696816 chr4B 650696816 G A G A 3 missense_variant MODERATE transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361000 chr4B_650696981 chr4B 650696981 A A G G 4 synonymous_variant LOW transcript unique_Triplet 650696009 650699065 3057 8 0.261694471704285 RFvsST 235724 673534552 673298829 no 101.688052004353 TraesCS4B01G361700 chr4B_650895049 chr4B 650895049 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650890341 chr4B 650890341 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650890491 chr4B 650890491 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650890275 chr4B 650890275 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650896155 chr4B 650896155 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650896144 chr4B 650896144 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650893068 chr4B 650893068 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650892871 chr4B 650892871 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361700 chr4B_650894124 chr4B 650894124 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 650889159 650895965 6807 9 0.132216835610401 RFvsST 235724 673534552 673298829 no 437.340758157438 TraesCS4B01G361800 chr4B_650937771 chr4B 650937771 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 650935173 650937731 2559 1 0.0390777647518562 RFvsST 235724 673534552 673298829 no 62.9200200631136 TraesCS4B01G363100 chr4B_651992719 chr4B 651992719 G C G C 3 missense_variant MODERATE transcript unique_Triplet 651991659 651994070 2412 1 0.0414593698175788 RFvsST 235724 673534552 673298829 no 31.019955074145 TraesCS4B01G363400 chr4B_652267986 chr4B 652267986 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652268002 chr4B 652268002 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267456 chr4B 652267456 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267919 chr4B 652267919 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267649 chr4B 652267649 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267563 chr4B 652267563 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267829 chr4B 652267829 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267763 chr4B 652267763 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G363400 chr4B_652267393 chr4B 652267393 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 652272369 652277516 5148 9 0.174825174825175 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G365600 chr4B_653426918 chr4B 653426918 A A G G 4 synonymous_variant LOW transcript non_Triplet 653426888 653431922 5035 1 0.0198609731876862 RFvsST 235724 673534552 673298829 no 177.672203807319 TraesCS4B01G367200 chr4B_654263402 chr4B 654263402 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 654263410 654267522 4113 2 0.0486263068319961 RFvsST 235724 673534552 673298829 no 2574.47786543218 TraesCS4B01G367200 chr4B_654263494 chr4B 654263494 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 654263410 654267522 4113 2 0.0486263068319961 RFvsST 235724 673534552 673298829 no 2574.47786543218 TraesCS4B01G367300 chr4B_654275166 chr4B 654275166 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 654273788 654275716 1929 2 0.103680663556247 RFvsST 235724 673534552 673298829 no 100.912837480156 TraesCS4B01G367300 chr4B_654273766 chr4B 654273766 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 654273788 654275716 1929 2 0.103680663556247 RFvsST 235724 673534552 673298829 no 100.912837480156 TraesCS4B01G367700 chr4B_654560817 chr4B 654560817 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 654560940 654561404 465 3 0.645161290322581 RFvsST 235724 673534552 673298829 no 42.5788456752528 TraesCS4B01G367700 chr4B_654560825 chr4B 654560825 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 654560940 654561404 465 3 0.645161290322581 RFvsST 235724 673534552 673298829 no 42.5788456752528 TraesCS4B01G367700 chr4B_654561090 chr4B 654561090 C C G G 4 missense_variant MODERATE transcript non_Triplet 654560940 654561404 465 3 0.645161290322581 RFvsST 235724 673534552 673298829 no 42.5788456752528 TraesCS4B01G370000 chr4B_655771716 chr4B 655771716 C C T T 4 missense_variant MODERATE transcript non_Triplet 655771123 655774984 3862 2 0.0517866390471258 RFvsST 235724 673534552 673298829 no 102.937888077033 TraesCS4B01G370000 chr4B_655771920 chr4B 655771920 C C T T 4 missense_variant MODERATE transcript non_Triplet 655771123 655774984 3862 2 0.0517866390471258 RFvsST 235724 673534552 673298829 no 102.937888077033 TraesCS4B01G370200 chr4B_656159995 chr4B 656159995 A A G G 4 missense_variant MODERATE transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656163142 chr4B 656163142 C C T T 4 synonymous_variant LOW transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656163789 chr4B 656163789 T T C C 4 synonymous_variant LOW transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656160635 chr4B 656160635 A A C C 4 intron_variant MODIFIER transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656164310 chr4B 656164310 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656160637 chr4B 656160637 C C T T 4 intron_variant MODIFIER transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656163187 chr4B 656163187 C C T T 4 synonymous_variant LOW transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656160523 chr4B 656160523 T T C C 4 intron_variant MODIFIER transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656159976 chr4B 656159976 C C T T 4 synonymous_variant LOW transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G370200 chr4B_656164029 chr4B 656164029 G G A A 4 missense_variant MODERATE transcript non_Triplet 656159593 656164198 4606 10 0.217108119843682 RFvsST 235724 673534552 673298829 no 74.543476723917 TraesCS4B01G371300 chr4B_656899720 chr4B 656899720 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 656899689 656902772 3084 4 0.12970168612192 RFvsST 235724 673534552 673298829 no 36.5224767253607 TraesCS4B01G371300 chr4B_656902707 chr4B 656902707 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 656899689 656902772 3084 4 0.12970168612192 RFvsST 235724 673534552 673298829 no 36.5224767253607 TraesCS4B01G371300 chr4B_656902576 chr4B 656902576 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 656899689 656902772 3084 4 0.12970168612192 RFvsST 235724 673534552 673298829 no 36.5224767253607 TraesCS4B01G371300 chr4B_656902812 chr4B 656902812 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 656899689 656902772 3084 4 0.12970168612192 RFvsST 235724 673534552 673298829 no 36.5224767253607 TraesCS4B01G371400 chr4B_656909858 chr4B 656909858 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 656903710 656910880 7171 4 0.0557802259099149 RFvsST 235724 673534552 673298829 no 106.338080814469 TraesCS4B01G371400 chr4B_656903889 chr4B 656903889 G G A A 4 stop_gained HIGH transcript nonUnique_Triplet 656903710 656910880 7171 4 0.0557802259099149 RFvsST 235724 673534552 673298829 no 106.338080814469 TraesCS4B01G371400 chr4B_656903904 chr4B 656903904 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 656903710 656910880 7171 4 0.0557802259099149 RFvsST 235724 673534552 673298829 no 106.338080814469 TraesCS4B01G371400 chr4B_656903801 chr4B 656903801 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 656903710 656910880 7171 4 0.0557802259099149 RFvsST 235724 673534552 673298829 no 106.338080814469 TraesCS4B01G371600 chr4B_657172059 chr4B 657172059 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 657165429 657170289 4861 1 0.020571898786258 RFvsST 235724 673534552 673298829 no 13.8185225391778 TraesCS4B01G371700 chr4B_657172751 chr4B 657172751 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657172920 chr4B 657172920 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657172226 chr4B 657172226 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657173103 chr4B 657173103 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657172269 chr4B 657172269 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657175001 chr4B 657175001 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657174935 chr4B 657174935 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657173055 chr4B 657173055 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657172755 chr4B 657172755 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657176336 chr4B 657176336 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371700 chr4B_657172306 chr4B 657172306 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 657172200 657176401 4202 11 0.261780104712042 RFvsST 235724 673534552 673298829 no 473.479764258289 TraesCS4B01G371800 chr4B_657185114 chr4B 657185114 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 657182387 657184485 2099 2 0.0952834683182468 RFvsST 235724 673534552 673298829 no 10.8729025595696 TraesCS4B01G371800 chr4B_657185082 chr4B 657185082 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 657182387 657184485 2099 2 0.0952834683182468 RFvsST 235724 673534552 673298829 no 10.8729025595696 TraesCS4B01G371900 chr4B_657185355 chr4B 657185355 C C T T 4 synonymous_variant LOW transcript unique_Triplet 657185169 657188101 2933 2 0.0681895669962496 RFvsST 235724 673534552 673298829 no 250.252303741334 TraesCS4B01G371900 chr4B_657185273 chr4B 657185273 G G A A 4 synonymous_variant LOW transcript unique_Triplet 657185169 657188101 2933 2 0.0681895669962496 RFvsST 235724 673534552 673298829 no 250.252303741334 TraesCS4B01G377600 chr4B_660354936 chr4B 660354936 C C G G 4 missense_variant MODERATE transcript non_Triplet 660352751 660355762 3012 1 0.0332005312084993 RFvsST 235724 673534552 673298829 no 139.719341704513 TraesCS4B01G380100 chr4B_660656121 chr4B 660656121 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 660652558 660653969 1412 1 0.0708215297450425 RFvsST 235724 673534552 673298829 no No_match TraesCS4B01G380200 chr4B_660657416 chr4B 660657416 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 660655709 660657375 1667 3 0.17996400719856 RFvsST 235724 673534552 673298829 no 1998.76137836673 TraesCS4B01G380200 chr4B_660657220 chr4B 660657220 C C G G 4 synonymous_variant LOW transcript non_Triplet 660655709 660657375 1667 3 0.17996400719856 RFvsST 235724 673534552 673298829 no 1998.76137836673 TraesCS4B01G380200 chr4B_660657449 chr4B 660657449 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 660655709 660657375 1667 3 0.17996400719856 RFvsST 235724 673534552 673298829 no 1998.76137836673 TraesCS4B01G383800 chr4B_663441597 chr4B 663441597 C C T T 4 synonymous_variant LOW transcript non_Triplet 663440885 663442899 2015 1 0.0496277915632754 RFvsST 235724 673534552 673298829 no 19.9389466675778 TraesCS4B01G386000 chr4B_664778017 chr4B 664778017 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 664773741 664777332 3592 1 0.0278396436525612 RFvsST 235724 673534552 673298829 no 586.089079184642 TraesCS4B01G386100 chr4B_664778752 chr4B 664778752 A A G G 4 synonymous_variant LOW transcript non_Triplet 664778050 664780174 2125 1 0.0470588235294118 RFvsST 235724 673534552 673298829 no 676.980304328714 TraesCS4B01G387800 chr4B_665397190 chr4B 665397190 C T C T 3 missense_variant MODERATE transcript non_Triplet 665397009 665404982 7974 3 0.0376222723852521 RFvsST 235724 673534552 673298829 no 20.1118494602618 TraesCS4B01G387800 chr4B_665404895 chr4B 665404895 G G A A 4 missense_variant MODERATE transcript non_Triplet 665397009 665404982 7974 3 0.0376222723852521 RFvsST 235724 673534552 673298829 no 20.1118494602618 TraesCS4B01G387800 chr4B_665403725 chr4B 665403725 A G A G 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 665397009 665404982 7974 3 0.0376222723852521 RFvsST 235724 673534552 673298829 no 20.1118494602618 TraesCS4B01G390700 chr4B_666611880 chr4B 666611880 C A C A 3 missense_variant MODERATE transcript non_Triplet 666611614 666612183 570 1 0.175438596491228 RFvsST 235724 673534552 673298829 no 211.109104781301 TraesCS4B01G391800 chr4B_667415821 chr4B 667415821 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667416905 chr4B 667416905 T C T C 3 synonymous_variant LOW transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667415726 chr4B 667415726 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667416967 chr4B 667416967 G A G A 3 missense_variant MODERATE transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667415735 chr4B 667415735 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667415823 chr4B 667415823 T A T A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667415724 chr4B 667415724 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G391800 chr4B_667415807 chr4B 667415807 C A C A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 667415325 667417923 2599 8 0.307810696421701 RFvsST 235724 673534552 673298829 no 509.421133584164 TraesCS4B01G395100 chr4B_669341231 chr4B 669341231 C T C T 3 missense_variant MODERATE transcript non_Triplet 669340878 669341471 594 1 0.168350168350168 RFvsST 235724 673534552 673298829 no 112.600426439784 TraesCS4B01G395900 chr4B_670444699 chr4B 670444699 T T C C 4 synonymous_variant LOW transcript non_Triplet 670442885 670446819 3935 1 0.0254129606099111 RFvsST 235724 673534552 673298829 no 51.6519986090999 TraesCS4B01G397700 chr4B_671755108 chr4B 671755108 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 671755036 671761185 6150 1 0.016260162601626 RFvsST 235724 673534552 673298829 no 27.6333749315335 TraesCS4B01G398200 chr4B_672240603 chr4B 672240603 A G A G 3 synonymous_variant LOW transcript non_Triplet 672236090 672244272 8183 1 0.0122204570450935 RFvsST 235724 673534552 673298829 no 279.47882686543 TraesCS4B01G398400 chr4B_672303258 chr4B 672303258 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 672296565 672305318 8754 4 0.0456933973040896 RFvsST 235724 673534552 673298829 no 124.096261544274 TraesCS4B01G398400 chr4B_672305737 chr4B 672305737 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 672296565 672305318 8754 4 0.0456933973040896 RFvsST 235724 673534552 673298829 no 124.096261544274 TraesCS4B01G398400 chr4B_672305477 chr4B 672305477 T A T A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 672296565 672305318 8754 4 0.0456933973040896 RFvsST 235724 673534552 673298829 no 124.096261544274 TraesCS4B01G398400 chr4B_672305557 chr4B 672305557 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 672296565 672305318 8754 4 0.0456933973040896 RFvsST 235724 673534552 673298829 no 124.096261544274 TraesCS4B01G399000 chr4B_673189313 chr4B 673189313 G A G A 3 missense_variant MODERATE transcript non_Triplet 673189104 673192316 3213 1 0.0311235605353252 RFvsST 235724 673534552 673298829 no 49.4064890256121 TraesCS4D01G006100 chr4D_3397245 chr4D 3397245 G G T T 4 synonymous_variant LOW transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006100 chr4D_3396383 chr4D 3396383 G G A A 4 synonymous_variant LOW transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006100 chr4D_3396341 chr4D 3396341 C C G G 4 synonymous_variant LOW transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006100 chr4D_3397128 chr4D 3397128 C C T T 4 synonymous_variant LOW transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006100 chr4D_3397209 chr4D 3397209 G G A A 4 synonymous_variant LOW transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006100 chr4D_3396009 chr4D 3396009 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 3396041 3400090 4050 6 0.148148148148148 RFvsST 459805 509852857 509393053 no 164.727566518601 TraesCS4D01G006400 chr4D_3427751 chr4D 3427751 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 3426358 3427205 848 2 0.235849056603774 RFvsST 459805 21775252 21315448 no 8.69125338415472 TraesCS4D01G006400 chr4D_3427621 chr4D 3427621 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 3426358 3427205 848 2 0.235849056603774 RFvsST 459805 21775252 21315448 no 8.69125338415472 TraesCS4D01G006500 chr4D_3427873 chr4D 3427873 A A G G 4 synonymous_variant LOW transcript unique_Triplet 3427774 3428509 736 4 0.543478260869565 RFvsST 459805 509852857 509393053 no 146.831020614734 TraesCS4D01G006500 chr4D_3428039 chr4D 3428039 C C T T 4 missense_variant MODERATE transcript unique_Triplet 3427774 3428509 736 4 0.543478260869565 RFvsST 459805 509852857 509393053 no 146.831020614734 TraesCS4D01G006500 chr4D_3427863 chr4D 3427863 G G A A 4 missense_variant MODERATE transcript unique_Triplet 3427774 3428509 736 4 0.543478260869565 RFvsST 459805 509852857 509393053 no 146.831020614734 TraesCS4D01G006500 chr4D_3427933 chr4D 3427933 T T G G 4 synonymous_variant LOW transcript unique_Triplet 3427774 3428509 736 4 0.543478260869565 RFvsST 459805 509852857 509393053 no 146.831020614734 TraesCS4D01G006600 chr4D_3430550 chr4D 3430550 G G A A 4 synonymous_variant LOW transcript non_Triplet 3429990 3430708 719 4 0.556328233657858 RFvsST 459805 509852857 509393053 no 315.272037822173 TraesCS4D01G006600 chr4D_3430116 chr4D 3430116 A A G G 4 synonymous_variant LOW transcript non_Triplet 3429990 3430708 719 4 0.556328233657858 RFvsST 459805 509852857 509393053 no 315.272037822173 TraesCS4D01G006600 chr4D_3430155 chr4D 3430155 G G C C 4 synonymous_variant LOW transcript non_Triplet 3429990 3430708 719 4 0.556328233657858 RFvsST 459805 509852857 509393053 no 315.272037822173 TraesCS4D01G006600 chr4D_3430138 chr4D 3430138 C C T T 4 missense_variant MODERATE transcript non_Triplet 3429990 3430708 719 4 0.556328233657858 RFvsST 459805 509852857 509393053 no 315.272037822173 TraesCS4D01G006700 chr4D_3437758 chr4D 3437758 T T G G 4 synonymous_variant LOW transcript unique_Triplet 3434490 3437791 3302 1 0.0302846759539673 RFvsST 459805 509852857 509393053 no 256.80137382802 TraesCS4D01G007400 chr4D_3715503 chr4D 3715503 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 3712491 3716532 4042 1 0.024740227610094 RFvsST 459805 21775252 21315448 no 74.0396789832307 TraesCS4D01G052700 chr4D_28994536 chr4D 28994536 C C T T 4 missense_variant MODERATE transcript unique_Triplet 28972128 28995173 23046 2 0.00867829558274755 RFvsST 6682318 346132292 339449975 no 144.62167024655 TraesCS4D01G052700 chr4D_28994535 chr4D 28994535 A A C C 4 missense_variant MODERATE transcript unique_Triplet 28972128 28995173 23046 2 0.00867829558274755 RFvsST 6682318 346132292 339449975 no 144.62167024655 TraesCS4D01G056300 chr4D_31652139 chr4D 31652139 G G C C 4 synonymous_variant LOW transcript non_Triplet 31649864 31652812 2949 1 0.0339097999321804 RFvsST 6682318 346132292 339449975 no 28.7497872634884 TraesCS4D01G064400 chr4D_39855547 chr4D 39855547 A A G G 4 missense_variant MODERATE transcript unique_Triplet 39852446 39857359 4914 1 0.0203500203500203 RFvsST 6682318 346132292 339449975 no 125.40076580203 TraesCS4D01G074000 chr4D_48598253 chr4D 48598253 C C T T 4 missense_variant MODERATE transcript unique_Triplet 48594828 48598903 4076 1 0.0245338567222767 RFvsST 6682318 346132292 339449975 no No_match TraesCS4D01G074200 chr4D_48704882 chr4D 48704882 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 48699917 48713222 13306 1 0.00751540658349617 RFvsST 6682318 346132292 339449975 no 28.3409432158701 TraesCS4D01G083800 chr4D_57487641 chr4D 57487641 C G C G 3 missense_variant MODERATE transcript unique_Triplet 57478943 57488723 9781 1 0.0102239034863511 RFvsST 6682318 346132292 339449975 no 242.908663459825 TraesCS4D01G084900 chr4D_58946688 chr4D 58946688 T C T C 3 synonymous_variant LOW transcript non_Triplet 58946136 58947666 1531 1 0.0653167864141084 RFvsST 6682318 346132292 339449975 no 333.220251439099 TraesCS4D01G093500 chr4D_68809470 chr4D 68809470 G A G A 3 missense_variant MODERATE transcript unique_Triplet 68808765 68811024 2260 1 0.0442477876106195 RFvsST 459805 509852857 509393053 no 95.6026618652008 TraesCS4D01G118600 chr4D_99659976 chr4D 99659976 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 99658516 99666103 7588 1 0.0131787032156036 RFvsST 459805 509852857 509393053 no 244.702351970676 TraesCS4D01G121700 chr4D_103235624 chr4D 103235624 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 103236456 103236863 408 1 0.245098039215686 RFvsST 459805 509852857 509393053 no 31.8109998395354 TraesCS4D01G124000 chr4D_108627373 chr4D 108627373 C C G G 4 synonymous_variant LOW transcript non_Triplet 108626401 108631156 4756 1 0.0210260723296888 RFvsST 459805 509852857 509393053 no 597.1304803279 TraesCS4D01G131400 chr4D_118310946 chr4D 118310946 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 118311882 118314646 2765 1 0.0361663652802893 RFvsST 6682318 346132292 339449975 no 116.111785100761 TraesCS4D01G132600 chr4D_119408277 chr4D 119408277 C C T T 4 synonymous_variant LOW transcript unique_Triplet 119406330 119410913 4584 1 0.0218150087260035 RFvsST 459805 509852857 509393053 no 302.864268657149 TraesCS4D01G144500 chr4D_132938300 chr4D 132938300 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 132941998 132964184 22187 1 0.00450714382295939 RFvsST 6682318 346132292 339449975 no No_match TraesCS4D01G149900 chr4D_163413220 chr4D 163413220 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 163412069 163412957 889 1 0.112485939257593 RFvsST 6682318 346132292 339449975 no 73.1728101414953 TraesCS4D01G155800 chr4D_208561805 chr4D 208561805 C C G G 4 missense_variant MODERATE transcript non_Triplet 208557748 208562002 4255 1 0.0235017626321974 RFvsST 459805 509852857 509393053 no 217.307910043131 TraesCS4D01G156300 chr4D_210464259 chr4D 210464259 G G A A 4 synonymous_variant LOW transcript non_Triplet 210451488 210464644 13157 1 0.00760051683514479 RFvsST 459805 509852857 509393053 no 53.8737039215728 TraesCS4D01G159600 chr4D_230488133 chr4D 230488133 T T C C 4 synonymous_variant LOW transcript non_Triplet 230471875 230493346 21472 1 0.00465722801788376 RFvsST 6682318 346132292 339449975 no 188.781780167564 TraesCS4D01G163700 chr4D_259499045 chr4D 259499045 C C T T 4 intron_variant MODIFIER transcript non_Triplet 259491483 259503910 12428 1 0.00804634695848085 RFvsST 459805 509852857 509393053 no No_match TraesCS4D01G167400 chr4D_289334525 chr4D 289334525 T C T C 3 missense_variant MODERATE transcript non_Triplet 289334518 289341167 6650 1 0.0150375939849624 RFvsST 6682318 346132292 339449975 no 756.937495982051 TraesCS4D01G168200 chr4D_292848286 chr4D 292848286 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 292849473 292851074 1602 1 0.0624219725343321 RFvsST 6682318 346132292 339449975 no 103.027831639708 TraesCS4D01G170800 chr4D_297305000 chr4D 297305000 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 297301941 297310140 8200 2 0.024390243902439 RFvsST 459805 509852857 509393053 no 1116.72415849486 TraesCS4D01G170800 chr4D_297305001 chr4D 297305001 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 297301941 297310140 8200 2 0.024390243902439 RFvsST 459805 509852857 509393053 no 1116.72415849486 TraesCS4D01G201900 chr4D_348799983 chr4D 348799983 T C T C 3 synonymous_variant LOW transcript unique_Triplet 348797701 348802114 4414 2 0.0453103760761214 RFvsST 301299223 509852857 208553635 no 861.932327926925 TraesCS4D01G201900 chr4D_348800051 chr4D 348800051 C A C A 3 missense_variant MODERATE transcript unique_Triplet 348797701 348802114 4414 2 0.0453103760761214 RFvsST 301299223 509852857 208553635 no 861.932327926925 TraesCS4D01G204600 chr4D_352124891 chr4D 352124891 G T G T 3 missense_variant MODERATE transcript unique_Triplet 352124810 352125547 738 1 0.13550135501355 RFvsST 459805 509852857 509393053 no 90.7671146335369 TraesCS4D01G205800 chr4D_353427785 chr4D 353427785 G A G A 3 missense_variant MODERATE transcript unique_Triplet 353425064 353427789 2726 1 0.0366837857666911 RFvsST 301299223 509852857 208553635 no 376.662484730854 TraesCS4D01G209300 chr4D_360764341 chr4D 360764341 C T C T 3 missense_variant MODERATE transcript unique_Triplet 360762592 360764943 2352 1 0.0425170068027211 RFvsST 301299223 509852857 208553635 no 35.0427876184022 TraesCS4D01G209600 chr4D_360952383 chr4D 360952383 A G A G 3 synonymous_variant LOW transcript unique_Triplet 360952254 360952831 578 1 0.173010380622837 RFvsST 459805 509852857 509393053 no 64.8420896051005 TraesCS4D01G233400 chr4D_394142265 chr4D 394142265 T T C C 4 missense_variant MODERATE transcript non_Triplet 394140993 394144340 3348 1 0.029868578255675 RFvsST 459805 509852857 509393053 no 100.805065736626 TraesCS4D01G236800 chr4D_398907454 chr4D 398907454 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 398903051 398905064 2014 3 0.148957298907646 RFvsST 459805 509852857 509393053 no 66.8526289982 TraesCS4D01G236800 chr4D_398905270 chr4D 398905270 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 398903051 398905064 2014 3 0.148957298907646 RFvsST 459805 509852857 509393053 no 66.8526289982 TraesCS4D01G236800 chr4D_398908298 chr4D 398908298 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 398903051 398905064 2014 3 0.148957298907646 RFvsST 459805 509852857 509393053 no 66.8526289982 TraesCS4D01G240800 chr4D_403182410 chr4D 403182410 G G C C 4 synonymous_variant LOW transcript unique_Triplet 403182162 403183748 1587 1 0.0630119722747322 RFvsST 301299223 509852857 208553635 no 127.977905940123 TraesCS4D01G241800 chr4D_404111904 chr4D 404111904 C C A A 4 synonymous_variant LOW transcript non_Triplet 404110938 404113418 2481 1 0.0403063280935107 RFvsST 301299223 509852857 208553635 no 1073.98199204938 TraesCS4D01G247100 chr4D_416053015 chr4D 416053015 A G A G 3 missense_variant MODERATE transcript unique_Triplet 416050405 416072058 21654 1 0.00461808441858317 RFvsST 301299223 509852857 208553635 no 69.3271549927344 TraesCS4D01G256700 chr4D_426519596 chr4D 426519596 A G A G 3 synonymous_variant LOW transcript unique_Triplet 426518541 426522114 3574 1 0.0279798545047566 RFvsST 301299223 509852857 208553635 no 313.044159006509 TraesCS4D01G267800 chr4D_438790257 chr4D 438790257 C C T T 4 missense_variant MODERATE transcript non_Triplet 438790145 438794178 4034 1 0.0247892910262766 RFvsST 459805 509852857 509393053 no 1174.76792813451 TraesCS4D01G271500 chr4D_442177219 chr4D 442177219 G G A A 4 missense_variant MODERATE transcript unique_Triplet 442171356 442177364 6009 1 0.0166417041105009 RFvsST 459805 509852857 509393053 no 557.390225690958 TraesCS4D01G280300 chr4D_451281153 chr4D 451281153 C C T T 4 synonymous_variant LOW transcript unique_Triplet 451279420 451281426 2007 1 0.049825610363727 RFvsST 459805 509852857 509393053 no 29.6899061167383 TraesCS4D01G286700 chr4D_458383850 chr4D 458383850 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 458384021 458385084 1064 1 0.093984962406015 RFvsST 301299223 509852857 208553635 no 437.025738006996 TraesCS4D01G294100 chr4D_464536974 chr4D 464536974 C C T T 4 synonymous_variant LOW transcript unique_Triplet 464531237 464538759 7523 1 0.0132925694536754 RFvsST 301299223 509852857 208553635 no 223.025864301671 TraesCS4D01G301100 chr4D_469305316 chr4D 469305316 A T A T 3 missense_variant MODERATE transcript nonUnique_Triplet 469304660 469319667 15008 1 0.00666311300639659 RFvsST 301299223 509852857 208553635 no 4.94458846204317 TraesCS4D01G302500 chr4D_470233258 chr4D 470233258 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 470230158 470235700 5543 1 0.0180407721450478 RFvsST 301299223 509852857 208553635 no 227.795543721189 TraesCS4D01G305100 chr4D_473809666 chr4D 473809666 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 473809683 473811498 1816 1 0.0550660792951542 RFvsST 459805 509852857 509393053 no 7.42699770075833 TraesCS4D01G309500 chr4D_477122572 chr4D 477122572 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 477102440 477122503 20064 1 0.00498405103668262 RFvsST 459805 509852857 509393053 no 15.6125230158708 TraesCS4D01G311700 chr4D_477917115 chr4D 477917115 C T C T 3 missense_variant MODERATE transcript unique_Triplet 477915323 477918473 3151 1 0.0317359568390987 RFvsST 301299223 509852857 208553635 no 99.0512616010587 TraesCS4D01G316600 chr4D_481883289 chr4D 481883289 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 481883344 481883900 557 1 0.179533213644524 RFvsST 301299223 509852857 208553635 no 94.1794660335894 TraesCS4D01G332600 chr4D_490131358 chr4D 490131358 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 490127178 490131761 4584 1 0.0218150087260035 RFvsST 301299223 509852857 208553635 no 299.114708781686 TraesCS4D01G335400 chr4D_493920346 chr4D 493920346 G G T T 4 missense_variant MODERATE transcript unique_Triplet 493919241 493924160 4920 1 0.0203252032520325 RFvsST 301299223 509852857 208553635 no 74.2691986599066 TraesCS4D01G338900 chr4D_497031213 chr4D 497031213 G A G A 3 missense_variant MODERATE transcript unique_Triplet 497028838 497031532 2695 1 0.0371057513914657 RFvsST 301299223 509852857 208553635 no 288.948283660652 TraesCS4D01G344300 chr4D_499618923 chr4D 499618923 T C T C 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 499618289 499619717 1429 1 0.0699790062981106 RFvsST 459805 509852857 509393053 no 3212.59582735327 TraesCS4D01G348400 chr4D_502066046 chr4D 502066046 G A G A 3 missense_variant MODERATE transcript unique_Triplet 502065807 502066544 738 2 0.2710027100271 RFvsST 301299223 509852857 208553635 no 381.971461767621 TraesCS4D01G348400 chr4D_502066060 chr4D 502066060 T T C C 4 missense_variant MODERATE transcript unique_Triplet 502065807 502066544 738 2 0.2710027100271 RFvsST 301299223 509852857 208553635 no 381.971461767621 TraesCS4D01G349200 chr4D_502416119 chr4D 502416119 T T C C 4 missense_variant MODERATE transcript unique_Triplet 502415689 502419913 4225 1 0.0236686390532544 RFvsST 459805 509852857 509393053 no 75.0813019031056 TraesCS4D01G350700 chr4D_502748467 chr4D 502748467 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 502747944 502751601 3658 1 0.0273373428102788 RFvsST 459805 509852857 509393053 no 185.301258991472 TraesCS4D01G356400 chr4D_505352837 chr4D 505352837 G A G A 3 synonymous_variant LOW transcript unique_Triplet 505352690 505354773 2084 2 0.0959692898272553 RFvsST 301299223 509852857 208553635 no 182.941691416361 TraesCS4D01G356400 chr4D_505353043 chr4D 505353043 C C T T 4 missense_variant MODERATE transcript unique_Triplet 505352690 505354773 2084 2 0.0959692898272553 RFvsST 301299223 509852857 208553635 no 182.941691416361 TraesCS4D01G362900 chr4D_509095616 chr4D 509095616 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 509095522 509096669 1148 1 0.0871080139372822 RFvsST 459805 509852857 509393053 no 133.233600626207 TraesCS4D01G364600 chr4D_509364642 chr4D 509364642 C T C T 3 synonymous_variant LOW transcript unique_Triplet 509363547 509373498 9952 1 0.010048231511254 RFvsST 301299223 509852857 208553635 no 42.6840843010391 TraesCS5A01G000600 chr5A_641668 chr5A 641668 T T C C 4 synonymous_variant LOW transcript non_Triplet 638965 644115 5151 2 0.03882741215298 RFvsST 13922 82306649 82292728 no 33.7206360862988 TraesCS5A01G000600 chr5A_641692 chr5A 641692 T T C C 4 synonymous_variant LOW transcript non_Triplet 638965 644115 5151 2 0.03882741215298 RFvsST 13922 82306649 82292728 no 33.7206360862988 TraesCS5A01G000700 chr5A_644225 chr5A 644225 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 644931 645971 1041 1 0.0960614793467819 RFvsST 13922 82306649 82292728 no 1048.62641750953 TraesCS5A01G002600 chr5A_2112701 chr5A 2112701 T C T C 3 synonymous_variant LOW transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002600 chr5A_2113505 chr5A 2113505 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002600 chr5A_2109014 chr5A 2109014 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002600 chr5A_2113372 chr5A 2113372 T G T G 3 missense_variant MODERATE transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002600 chr5A_2110927 chr5A 2110927 A G A G 3 missense_variant MODERATE transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002600 chr5A_2113467 chr5A 2113467 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 2110603 2113440 2838 6 0.211416490486258 RFvsST 13922 82306649 82292728 no 211.807238312127 TraesCS5A01G002700 chr5A_2121454 chr5A 2121454 C A C A 3 intron_variant MODIFIER transcript non_Triplet 2120996 2123863 2868 1 0.0348675034867503 RFvsST 13922 82306649 82292728 no 1144.98133596447 TraesCS5A01G004000 chr5A_2869563 chr5A 2869563 G G A A 4 synonymous_variant LOW transcript non_Triplet 2867161 2869710 2550 2 0.0784313725490196 RFvsST 13922 82306649 82292728 no 231.082868927511 TraesCS5A01G004000 chr5A_2867609 chr5A 2867609 T C T C 3 missense_variant MODERATE transcript non_Triplet 2867161 2869710 2550 2 0.0784313725490196 RFvsST 13922 82306649 82292728 no 231.082868927511 TraesCS5A01G004400 chr5A_3088583 chr5A 3088583 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3088393 chr5A 3088393 G G C C 4 synonymous_variant LOW transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3088523 chr5A 3088523 G G A A 4 missense_variant MODERATE transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3088343 chr5A 3088343 C C T T 4 missense_variant MODERATE transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3085661 chr5A 3085661 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3085823 chr5A 3085823 A A G G 4 missense_variant MODERATE transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3088181 chr5A 3088181 C C T T 4 synonymous_variant LOW transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G004400 chr5A_3089206 chr5A 3089206 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 3085702 3088555 2854 8 0.28030833917309 RFvsST 13922 82306649 82292728 no 748.10115204213 TraesCS5A01G008300 chr5A_5998441 chr5A 5998441 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 5989263 5999179 9917 1 0.0100836946657255 RFvsST 13922 82306649 82292728 no 23.5537559371348 TraesCS5A01G015600 chr5A_11062031 chr5A 11062031 T G T G 3 missense_variant MODERATE transcript unique_Triplet 11054790 11068602 13813 1 0.00723955693911533 RFvsST 13922 82306649 82292728 no 886.211795573384 TraesCS5A01G019200 chr5A_14844708 chr5A 14844708 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 14844273 14848275 4003 1 0.024981264051961 RFvsST 13922 82306649 82292728 no 17.3034581022847 TraesCS5A01G020900 chr5A_17224259 chr5A 17224259 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 17221683 17224224 2542 1 0.03933910306845 RFvsST 13922 82306649 82292728 no 1266.3500035748 TraesCS5A01G024500 chr5A_19226117 chr5A 19226117 C T C T 3 missense_variant MODERATE transcript non_Triplet 19223415 19227300 3886 2 0.0514668039114771 RFvsST 13922 82306649 82292728 no 67.3365950787237 TraesCS5A01G024500 chr5A_19223164 chr5A 19223164 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 19223415 19227300 3886 2 0.0514668039114771 RFvsST 13922 82306649 82292728 no 67.3365950787237 TraesCS5A01G024600 chr5A_19233769 chr5A 19233769 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 19229384 19232950 3567 5 0.140173815531259 RFvsST 13922 82306649 82292728 no 223.926444736522 TraesCS5A01G024600 chr5A_19231234 chr5A 19231234 G A G A 3 synonymous_variant LOW transcript non_Triplet 19229384 19232950 3567 5 0.140173815531259 RFvsST 13922 82306649 82292728 no 223.926444736522 TraesCS5A01G024600 chr5A_19232048 chr5A 19232048 A G A G 3 missense_variant MODERATE transcript non_Triplet 19229384 19232950 3567 5 0.140173815531259 RFvsST 13922 82306649 82292728 no 223.926444736522 TraesCS5A01G024600 chr5A_19231046 chr5A 19231046 C T C T 3 synonymous_variant LOW transcript non_Triplet 19229384 19232950 3567 5 0.140173815531259 RFvsST 13922 82306649 82292728 no 223.926444736522 TraesCS5A01G024600 chr5A_19233447 chr5A 19233447 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 19229384 19232950 3567 5 0.140173815531259 RFvsST 13922 82306649 82292728 no 223.926444736522 TraesCS5A01G024900 chr5A_19273091 chr5A 19273091 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 19268602 19273477 4876 2 0.0410172272354389 RFvsST 13922 82306649 82292728 no 4703.63053164931 TraesCS5A01G024900 chr5A_19273780 chr5A 19273780 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 19268602 19273477 4876 2 0.0410172272354389 RFvsST 13922 82306649 82292728 no 4703.63053164931 TraesCS5A01G025400 chr5A_19978086 chr5A 19978086 G G A A 4 synonymous_variant LOW transcript non_Triplet 19976110 19979972 3863 2 0.0517732332384157 RFvsST 13922 82306649 82292728 no 368.971997887403 TraesCS5A01G025400 chr5A_19980186 chr5A 19980186 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 19976110 19979972 3863 2 0.0517732332384157 RFvsST 13922 82306649 82292728 no 368.971997887403 TraesCS5A01G025900 chr5A_20994312 chr5A 20994312 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 20993223 20998405 5183 4 0.0771753810534439 RFvsST 13922 82306649 82292728 no No_match TraesCS5A01G025900 chr5A_20994259 chr5A 20994259 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 20993223 20998405 5183 4 0.0771753810534439 RFvsST 13922 82306649 82292728 no No_match TraesCS5A01G025900 chr5A_20998504 chr5A 20998504 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 20993223 20998405 5183 4 0.0771753810534439 RFvsST 13922 82306649 82292728 no No_match TraesCS5A01G025900 chr5A_20993327 chr5A 20993327 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 20993223 20998405 5183 4 0.0771753810534439 RFvsST 13922 82306649 82292728 no No_match TraesCS5A01G026000 chr5A_21411087 chr5A 21411087 C T C T 3 synonymous_variant LOW transcript unique_Triplet 21408052 21411438 3387 2 0.0590493061706525 RFvsST 13922 82306649 82292728 no 260.742800734604 TraesCS5A01G026000 chr5A_21408679 chr5A 21408679 G C G C 3 missense_variant MODERATE transcript unique_Triplet 21408052 21411438 3387 2 0.0590493061706525 RFvsST 13922 82306649 82292728 no 260.742800734604 TraesCS5A01G030000 chr5A_26134831 chr5A 26134831 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 26131321 26134845 3525 1 0.0283687943262411 RFvsST 13922 82306649 82292728 no 68.8593914882735 TraesCS5A01G030100 chr5A_26144276 chr5A 26144276 G A G A 3 synonymous_variant LOW transcript non_Triplet 26144011 26145591 1581 2 0.126502213788741 RFvsST 13922 82306649 82292728 no 11.6569478548392 TraesCS5A01G030100 chr5A_26144236 chr5A 26144236 C G C G 3 missense_variant MODERATE transcript non_Triplet 26144011 26145591 1581 2 0.126502213788741 RFvsST 13922 82306649 82292728 no 11.6569478548392 TraesCS5A01G030300 chr5A_26440510 chr5A 26440510 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 26440467 26449266 8800 2 0.0227272727272727 RFvsST 13922 82306649 82292728 no 153.517158968032 TraesCS5A01G030300 chr5A_26449585 chr5A 26449585 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 26440467 26449266 8800 2 0.0227272727272727 RFvsST 13922 82306649 82292728 no 153.517158968032 TraesCS5A01G030500 chr5A_26468464 chr5A 26468464 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 26466873 26468455 1583 3 0.189513581806696 RFvsST 13922 82306649 82292728 no 7.46989775584361 TraesCS5A01G030500 chr5A_26466635 chr5A 26466635 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 26466873 26468455 1583 3 0.189513581806696 RFvsST 13922 82306649 82292728 no 7.46989775584361 TraesCS5A01G030500 chr5A_26466646 chr5A 26466646 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 26466873 26468455 1583 3 0.189513581806696 RFvsST 13922 82306649 82292728 no 7.46989775584361 TraesCS5A01G030800 chr5A_28104282 chr5A 28104282 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 28104117 28106647 2531 3 0.118530225207428 RFvsST 13922 82306649 82292728 no 670.047235091038 TraesCS5A01G030800 chr5A_28104875 chr5A 28104875 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 28104117 28106647 2531 3 0.118530225207428 RFvsST 13922 82306649 82292728 no 670.047235091038 TraesCS5A01G030800 chr5A_28103951 chr5A 28103951 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 28104117 28106647 2531 3 0.118530225207428 RFvsST 13922 82306649 82292728 no 670.047235091038 TraesCS5A01G031000 chr5A_28665628 chr5A 28665628 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 28664497 28665783 1287 1 0.0777000777000777 RFvsST 13922 82306649 82292728 no 345.653278484856 TraesCS5A01G031100 chr5A_28671030 chr5A 28671030 A G A G 3 missense_variant MODERATE transcript unique_Triplet 28670984 28674778 3795 1 0.0263504611330698 RFvsST 13922 82306649 82292728 no 5.16348044332949 TraesCS5A01G032000 chr5A_29627858 chr5A 29627858 C T C T 3 synonymous_variant LOW transcript non_Triplet 29626599 29627882 1284 2 0.155763239875389 RFvsST 13922 82306649 82292728 no 17.2209837619736 TraesCS5A01G032000 chr5A_29626595 chr5A 29626595 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 29626599 29627882 1284 2 0.155763239875389 RFvsST 13922 82306649 82292728 no 17.2209837619736 TraesCS5A01G032300 chr5A_29678811 chr5A 29678811 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 29680512 29682207 1696 1 0.0589622641509434 RFvsST 13922 82306649 82292728 no 25.7737368809249 TraesCS5A01G106300 chr5A_174577281 chr5A 174577281 G A G A 3 missense_variant MODERATE transcript unique_Triplet 174574200 174603205 29006 1 0.0034475625732607 RFvsST 88988819 316350890 227362072 no 1.99109269788609 TraesCS5A01G107900 chr5A_191035700 chr5A 191035700 A A C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 191035529 191040494 4966 1 0.0201369311316955 RFvsST 88988819 316350890 227362072 no 456.187799453407 TraesCS5A01G108400 chr5A_193921924 chr5A 193921924 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 193918529 193921880 3352 1 0.0298329355608592 RFvsST 88988819 316350890 227362072 no 1506.61536883115 TraesCS5A01G161600 chr5A_344544730 chr5A 344544730 G G A A 4 synonymous_variant LOW transcript unique_Triplet 344535914 344544787 8874 1 0.0112688753662385 RFvsST 286678925 609619180 322940256 no 246.301135679557 TraesCS5A01G166400 chr5A_355178537 chr5A 355178537 A A T T 4 missense_variant MODERATE transcript unique_Triplet 355177862 355188089 10228 1 0.00977708251857646 RFvsST 286678925 609619180 322940256 no 624.936239222223 TraesCS5A01G175600 chr5A_369634067 chr5A 369634067 C C T T 4 synonymous_variant LOW transcript unique_Triplet 369624072 369639171 15100 1 0.00662251655629139 RFvsST 286678925 609619180 322940256 no 365.760225924714 TraesCS5A01G179900 chr5A_378518064 chr5A 378518064 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 378509943 378517966 8024 1 0.0124626121635095 RFvsST 286678925 609619180 322940256 no 1.36887622979669 TraesCS5A01G187200 chr5A_389064334 chr5A 389064334 G T G T 3 missense_variant MODERATE transcript unique_Triplet 389061882 389064369 2488 1 0.0401929260450161 RFvsST 286678925 609619180 322940256 no 96.4711219788311 TraesCS5A01G187400 chr5A_389132252 chr5A 389132252 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 389132290 389133846 1557 1 0.0642260757867694 RFvsST 286678925 609619180 322940256 no 153.547456101209 TraesCS5A01G188100 chr5A_389718131 chr5A 389718131 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 389719489 389724079 4591 1 0.0217817468961011 RFvsST 286678925 609619180 322940256 no 13.1422353072176 TraesCS5A01G188500 chr5A_390237592 chr5A 390237592 A G A G 3 synonymous_variant LOW transcript unique_Triplet 390234456 390237742 3287 3 0.0912686340127776 RFvsST 286678925 609619180 322940256 no 48.643420682327 TraesCS5A01G188500 chr5A_390234433 chr5A 390234433 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 390234456 390237742 3287 3 0.0912686340127776 RFvsST 286678925 609619180 322940256 no 48.643420682327 TraesCS5A01G188500 chr5A_390236429 chr5A 390236429 T C T C 3 missense_variant MODERATE transcript unique_Triplet 390234456 390237742 3287 3 0.0912686340127776 RFvsST 286678925 609619180 322940256 no 48.643420682327 TraesCS5A01G188700 chr5A_390365972 chr5A 390365972 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 390366248 390370467 4220 3 0.0710900473933649 RFvsST 286678925 609619180 322940256 no 42.0140373052489 TraesCS5A01G188700 chr5A_390367274 chr5A 390367274 A G A G 3 synonymous_variant LOW transcript unique_Triplet 390366248 390370467 4220 3 0.0710900473933649 RFvsST 286678925 609619180 322940256 no 42.0140373052489 TraesCS5A01G188700 chr5A_390365979 chr5A 390365979 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 390366248 390370467 4220 3 0.0710900473933649 RFvsST 286678925 609619180 322940256 no 42.0140373052489 TraesCS5A01G188800 chr5A_390554802 chr5A 390554802 A G A G 3 synonymous_variant LOW transcript unique_Triplet 390553164 390563367 10204 2 0.0196001568012544 RFvsST 286678925 609619180 322940256 no 19.8595504669376 TraesCS5A01G188800 chr5A_390553255 chr5A 390553255 G C G C 3 missense_variant MODERATE transcript unique_Triplet 390553164 390563367 10204 2 0.0196001568012544 RFvsST 286678925 609619180 322940256 no 19.8595504669376 TraesCS5A01G189000 chr5A_391517132 chr5A 391517132 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 391517125 391521309 4185 5 0.1194743130227 RFvsST 286678925 609619180 322940256 no 234.510806726649 TraesCS5A01G189000 chr5A_391520758 chr5A 391520758 T T C C 4 synonymous_variant LOW transcript unique_Triplet 391517125 391521309 4185 5 0.1194743130227 RFvsST 286678925 609619180 322940256 no 234.510806726649 TraesCS5A01G189000 chr5A_391517312 chr5A 391517312 G G T T 4 synonymous_variant LOW transcript unique_Triplet 391517125 391521309 4185 5 0.1194743130227 RFvsST 286678925 609619180 322940256 no 234.510806726649 TraesCS5A01G189000 chr5A_391517425 chr5A 391517425 G G A A 4 missense_variant MODERATE transcript unique_Triplet 391517125 391521309 4185 5 0.1194743130227 RFvsST 286678925 609619180 322940256 no 234.510806726649 TraesCS5A01G189000 chr5A_391519996 chr5A 391519996 A A G G 4 synonymous_variant LOW transcript unique_Triplet 391517125 391521309 4185 5 0.1194743130227 RFvsST 286678925 609619180 322940256 no 234.510806726649 TraesCS5A01G189100 chr5A_391548937 chr5A 391548937 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 391543779 391546273 2495 5 0.200400801603206 RFvsST 286678925 609619180 322940256 no 134.568311472599 TraesCS5A01G189100 chr5A_391548928 chr5A 391548928 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 391543779 391546273 2495 5 0.200400801603206 RFvsST 286678925 609619180 322940256 no 134.568311472599 TraesCS5A01G189100 chr5A_391543802 chr5A 391543802 T T C C 4 missense_variant MODERATE transcript unique_Triplet 391543779 391546273 2495 5 0.200400801603206 RFvsST 286678925 609619180 322940256 no 134.568311472599 TraesCS5A01G189100 chr5A_391548970 chr5A 391548970 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 391543779 391546273 2495 5 0.200400801603206 RFvsST 286678925 609619180 322940256 no 134.568311472599 TraesCS5A01G189100 chr5A_391543280 chr5A 391543280 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 391543779 391546273 2495 5 0.200400801603206 RFvsST 286678925 609619180 322940256 no 134.568311472599 TraesCS5A01G189200 chr5A_391550048 chr5A 391550048 G G C C 4 synonymous_variant LOW transcript unique_Triplet 391549134 391553896 4763 1 0.0209951711106445 RFvsST 286678925 609619180 322940256 no 117.610518697997 TraesCS5A01G190000 chr5A_394181833 chr5A 394181833 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 394181403 394183239 1837 1 0.0544365813826892 RFvsST 286678925 609619180 322940256 no 985.819513845381 TraesCS5A01G190600 chr5A_395053849 chr5A 395053849 C T C T 3 missense_variant MODERATE transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395057369 chr5A 395057369 T T A A 4 synonymous_variant LOW transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395057667 chr5A 395057667 T T C C 4 missense_variant MODERATE transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395058143 chr5A 395058143 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395057867 chr5A 395057867 G G A A 4 missense_variant MODERATE transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395058347 chr5A 395058347 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395055025 chr5A 395055025 C C T T 4 missense_variant MODERATE transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395058414 chr5A 395058414 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395058407 chr5A 395058407 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G190600 chr5A_395057446 chr5A 395057446 A G A G 3 missense_variant MODERATE transcript unique_Triplet 395053759 395058088 4330 10 0.23094688221709 RFvsST 286678925 609619180 322940256 no 70.969103309508 TraesCS5A01G191000 chr5A_395303724 chr5A 395303724 T G T G 3 intron_variant MODIFIER transcript non_Triplet 395303485 395304102 618 3 0.485436893203883 RFvsST 286678925 609619180 322940256 no 1848.46442721391 TraesCS5A01G191000 chr5A_395303226 chr5A 395303226 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 395303485 395304102 618 3 0.485436893203883 RFvsST 286678925 609619180 322940256 no 1848.46442721391 TraesCS5A01G191000 chr5A_395303749 chr5A 395303749 G C G C 3 intron_variant MODIFIER transcript non_Triplet 395303485 395304102 618 3 0.485436893203883 RFvsST 286678925 609619180 322940256 no 1848.46442721391 TraesCS5A01G191300 chr5A_395759737 chr5A 395759737 G A G A 3 synonymous_variant LOW transcript unique_Triplet 395759701 395760282 582 1 0.171821305841924 RFvsST 286678925 609619180 322940256 no 101.670712741443 TraesCS5A01G192700 chr5A_396230644 chr5A 396230644 C T C T 3 synonymous_variant LOW transcript non_Triplet 396229969 396230848 880 1 0.113636363636364 RFvsST 286678925 609619180 322940256 no 26.9783985359683 TraesCS5A01G198200 chr5A_402539828 chr5A 402539828 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 402540171 402541936 1766 4 0.226500566251416 RFvsST 286678925 609619180 322940256 no 495.476822499193 TraesCS5A01G198200 chr5A_402541576 chr5A 402541576 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 402540171 402541936 1766 4 0.226500566251416 RFvsST 286678925 609619180 322940256 no 495.476822499193 TraesCS5A01G198200 chr5A_402539729 chr5A 402539729 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 402540171 402541936 1766 4 0.226500566251416 RFvsST 286678925 609619180 322940256 no 495.476822499193 TraesCS5A01G198200 chr5A_402542366 chr5A 402542366 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 402540171 402541936 1766 4 0.226500566251416 RFvsST 286678925 609619180 322940256 no 495.476822499193 TraesCS5A01G198700 chr5A_403346140 chr5A 403346140 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 403351088 403355310 4223 3 0.0710395453469098 RFvsST 286678925 609619180 322940256 no 151.81431178338 TraesCS5A01G198700 chr5A_403352023 chr5A 403352023 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 403351088 403355310 4223 3 0.0710395453469098 RFvsST 286678925 609619180 322940256 no 151.81431178338 TraesCS5A01G198700 chr5A_403355316 chr5A 403355316 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 403351088 403355310 4223 3 0.0710395453469098 RFvsST 286678925 609619180 322940256 no 151.81431178338 TraesCS5A01G199000 chr5A_403872918 chr5A 403872918 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403872471 chr5A 403872471 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403870574 chr5A 403870574 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403870994 chr5A 403870994 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403871979 chr5A 403871979 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403870530 chr5A 403870530 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403873923 chr5A 403873923 C T C T 3 missense_variant MODERATE transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403871667 chr5A 403871667 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403870741 chr5A 403870741 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199000 chr5A_403873784 chr5A 403873784 G A G A 3 missense_variant MODERATE transcript non_Triplet 403873235 403877317 4083 10 0.244917952485917 RFvsST 286678925 609619180 322940256 no 25.5738699940775 TraesCS5A01G199300 chr5A_404177639 chr5A 404177639 G C G C 3 missense_variant MODERATE transcript unique_Triplet 404177302 404178633 1332 2 0.15015015015015 RFvsST 286678925 609619180 322940256 no 36.4422446532614 TraesCS5A01G199300 chr5A_404177638 chr5A 404177638 G A G A 3 synonymous_variant LOW transcript unique_Triplet 404177302 404178633 1332 2 0.15015015015015 RFvsST 286678925 609619180 322940256 no 36.4422446532614 TraesCS5A01G199600 chr5A_404311244 chr5A 404311244 T G T G 3 synonymous_variant LOW transcript non_Triplet 404310698 404315766 5069 3 0.059183270862103 RFvsST 286678925 609619180 322940256 no 94.4602031460551 TraesCS5A01G199600 chr5A_404314074 chr5A 404314074 A G A G 3 synonymous_variant LOW transcript non_Triplet 404310698 404315766 5069 3 0.059183270862103 RFvsST 286678925 609619180 322940256 no 94.4602031460551 TraesCS5A01G199600 chr5A_404311246 chr5A 404311246 C A C A 3 missense_variant MODERATE transcript non_Triplet 404310698 404315766 5069 3 0.059183270862103 RFvsST 286678925 609619180 322940256 no 94.4602031460551 TraesCS5A01G199700 chr5A_404535361 chr5A 404535361 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G199700 chr5A_404534937 chr5A 404534937 G A G A 3 missense_variant MODERATE transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G199700 chr5A_404532826 chr5A 404532826 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G199700 chr5A_404533831 chr5A 404533831 G A G A 3 synonymous_variant LOW transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G199700 chr5A_404534415 chr5A 404534415 T A T A 3 missense_variant MODERATE transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G199700 chr5A_404535144 chr5A 404535144 A G A G 3 synonymous_variant LOW transcript unique_Triplet 404531317 404535246 3930 6 0.152671755725191 RFvsST 286678925 609619180 322940256 no 236.283209391326 TraesCS5A01G207000 chr5A_417896017 chr5A 417896017 G C G C 3 synonymous_variant LOW transcript unique_Triplet 417883499 417896290 12792 1 0.00781738586616635 RFvsST 286678925 609619180 322940256 no 417.078817870236 TraesCS5A01G211700 chr5A_426931074 chr5A 426931074 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 426931071 426937351 6281 1 0.0159210316828531 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G212000 chr5A_427203511 chr5A 427203511 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 427205926 427207515 1590 1 0.0628930817610063 RFvsST 286678925 609619180 322940256 no 193.509627806861 TraesCS5A01G212700 chr5A_427853259 chr5A 427853259 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 427850638 427853235 2598 2 0.0769822940723634 RFvsST 286678925 609619180 322940256 no 17.679055247294 TraesCS5A01G212700 chr5A_427854535 chr5A 427854535 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 427850638 427853235 2598 2 0.0769822940723634 RFvsST 286678925 609619180 322940256 no 17.679055247294 TraesCS5A01G212800 chr5A_427894868 chr5A 427894868 T C T C 3 missense_variant MODERATE transcript unique_Triplet 427894110 427895666 1557 1 0.0642260757867694 RFvsST 286678925 609619180 322940256 no 38.6084159186065 TraesCS5A01G213600 chr5A_429251500 chr5A 429251500 G C G C 3 missense_variant MODERATE transcript unique_Triplet 429245477 429251612 6136 1 0.0162972620599739 RFvsST 286678925 609619180 322940256 no 41.7805819472279 TraesCS5A01G214400 chr5A_429983966 chr5A 429983966 T A T A 3 missense_variant MODERATE transcript unique_Triplet 429981067 429985416 4350 1 0.0229885057471264 RFvsST 286678925 609619180 322940256 no 57.6074366626639 TraesCS5A01G214900 chr5A_430246218 chr5A 430246218 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 430242070 430245426 3357 2 0.0595770032767352 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G214900 chr5A_430248621 chr5A 430248621 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 430242070 430245426 3357 2 0.0595770032767352 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G215000 chr5A_430246395 chr5A 430246395 C C G G 4 missense_variant MODERATE transcript unique_Triplet 430246359 430248321 1963 1 0.0509424350483953 RFvsST 286678925 609619180 322940256 no 24.4160661739444 TraesCS5A01G220200 chr5A_436892120 chr5A 436892120 T T G G 4 missense_variant MODERATE transcript unique_Triplet 436888528 436892281 3754 2 0.053276505061268 RFvsST 286678925 609619180 322940256 no 135.456143135997 TraesCS5A01G220200 chr5A_436889072 chr5A 436889072 T T C C 4 synonymous_variant LOW transcript unique_Triplet 436888528 436892281 3754 2 0.053276505061268 RFvsST 286678925 609619180 322940256 no 135.456143135997 TraesCS5A01G220500 chr5A_437040252 chr5A 437040252 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437039693 chr5A 437039693 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437039952 chr5A 437039952 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437036530 chr5A 437036530 G G T T 4 missense_variant MODERATE transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437039839 chr5A 437039839 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437039961 chr5A 437039961 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437035312 chr5A 437035312 A A G G 4 missense_variant MODERATE transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437036765 chr5A 437036765 T T C C 4 synonymous_variant LOW transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G220500 chr5A_437039718 chr5A 437039718 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 437035060 437036869 1810 9 0.497237569060773 RFvsST 286678925 609619180 322940256 no 29.2015411614663 TraesCS5A01G232800 chr5A_448109931 chr5A 448109931 C C T T 4 synonymous_variant LOW transcript non_Triplet 448109372 448112984 3613 1 0.0276778300581234 RFvsST 286678925 609619180 322940256 no 1054.53378213243 TraesCS5A01G233500 chr5A_448831145 chr5A 448831145 T T A A 4 missense_variant MODERATE transcript unique_Triplet 448831108 448834293 3186 1 0.0313873195229127 RFvsST 286678925 609619180 322940256 no 61.0123954768918 TraesCS5A01G233900 chr5A_450166630 chr5A 450166630 A G A G 3 synonymous_variant LOW transcript unique_Triplet 450164412 450168240 3829 2 0.0522329589971272 RFvsST 286678925 609619180 322940256 no 105.936515852674 TraesCS5A01G233900 chr5A_450168584 chr5A 450168584 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 450164412 450168240 3829 2 0.0522329589971272 RFvsST 286678925 609619180 322940256 no 105.936515852674 TraesCS5A01G234100 chr5A_450466923 chr5A 450466923 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 450471166 450471992 827 2 0.241837968561064 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G234100 chr5A_450467507 chr5A 450467507 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 450471166 450471992 827 2 0.241837968561064 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G249600 chr5A_464206318 chr5A 464206318 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 464206324 464210946 4623 4 0.0865239022279905 RFvsST 286678925 609619180 322940256 no 231.832680452923 TraesCS5A01G249600 chr5A_464206521 chr5A 464206521 A G A G 3 missense_variant MODERATE transcript non_Triplet 464206324 464210946 4623 4 0.0865239022279905 RFvsST 286678925 609619180 322940256 no 231.832680452923 TraesCS5A01G249600 chr5A_464210161 chr5A 464210161 C G C G 3 intron_variant MODIFIER transcript non_Triplet 464206324 464210946 4623 4 0.0865239022279905 RFvsST 286678925 609619180 322940256 no 231.832680452923 TraesCS5A01G249600 chr5A_464210850 chr5A 464210850 G A G A 3 missense_variant MODERATE transcript non_Triplet 464206324 464210946 4623 4 0.0865239022279905 RFvsST 286678925 609619180 322940256 no 231.832680452923 TraesCS5A01G249700 chr5A_464478517 chr5A 464478517 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464471482 464478646 7165 1 0.0139567341242149 RFvsST 286678925 609619180 322940256 no 192.636033966716 TraesCS5A01G251400 chr5A_467378498 chr5A 467378498 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 467372137 467379517 7381 2 0.0270965993767782 RFvsST 286678925 609619180 322940256 no 28.1211859316025 TraesCS5A01G251400 chr5A_467379120 chr5A 467379120 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 467372137 467379517 7381 2 0.0270965993767782 RFvsST 286678925 609619180 322940256 no 28.1211859316025 TraesCS5A01G251600 chr5A_467382536 chr5A 467382536 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 467380897 467384492 3596 1 0.0278086763070078 RFvsST 286678925 609619180 322940256 no 90.0051175988596 TraesCS5A01G252300 chr5A_468467313 chr5A 468467313 A G A G 3 missense_variant MODERATE transcript non_Triplet 468467059 468469114 2056 1 0.0486381322957198 RFvsST 286678925 609619180 322940256 no 156.646755475679 TraesCS5A01G253800 chr5A_469896937 chr5A 469896937 A G A G 3 synonymous_variant LOW transcript non_Triplet 469896377 469897651 1275 2 0.156862745098039 RFvsST 286678925 609619180 322940256 no 224.386566912382 TraesCS5A01G253800 chr5A_469897102 chr5A 469897102 G C G C 3 synonymous_variant LOW transcript non_Triplet 469896377 469897651 1275 2 0.156862745098039 RFvsST 286678925 609619180 322940256 no 224.386566912382 TraesCS5A01G255100 chr5A_470928088 chr5A 470928088 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 470923930 470924939 1010 1 0.099009900990099 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G256700 chr5A_472276160 chr5A 472276160 A G A G 3 missense_variant MODERATE transcript unique_Triplet 472274579 472278029 3451 3 0.0869313242538395 RFvsST 286678925 609619180 322940256 no 103.291308421477 TraesCS5A01G256700 chr5A_472278049 chr5A 472278049 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 472274579 472278029 3451 3 0.0869313242538395 RFvsST 286678925 609619180 322940256 no 103.291308421477 TraesCS5A01G256700 chr5A_472274567 chr5A 472274567 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 472274579 472278029 3451 3 0.0869313242538395 RFvsST 286678925 609619180 322940256 no 103.291308421477 TraesCS5A01G257000 chr5A_472343970 chr5A 472343970 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 472343789 472347557 3769 1 0.0265322366675511 RFvsST 286678925 609619180 322940256 no 173.816825299021 TraesCS5A01G257100 chr5A_472435649 chr5A 472435649 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 472434204 472435616 1413 4 0.283085633404105 RFvsST 286678925 609619180 322940256 no 1576.54572617888 TraesCS5A01G257100 chr5A_472434126 chr5A 472434126 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 472434204 472435616 1413 4 0.283085633404105 RFvsST 286678925 609619180 322940256 no 1576.54572617888 TraesCS5A01G257100 chr5A_472434261 chr5A 472434261 A G A G 3 synonymous_variant LOW transcript unique_Triplet 472434204 472435616 1413 4 0.283085633404105 RFvsST 286678925 609619180 322940256 no 1576.54572617888 TraesCS5A01G257100 chr5A_472435359 chr5A 472435359 G C G C 3 missense_variant MODERATE transcript unique_Triplet 472434204 472435616 1413 4 0.283085633404105 RFvsST 286678925 609619180 322940256 no 1576.54572617888 TraesCS5A01G257200 chr5A_472474658 chr5A 472474658 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 472479490 472480873 1384 3 0.216763005780347 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G257200 chr5A_472474674 chr5A 472474674 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 472479490 472480873 1384 3 0.216763005780347 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G257200 chr5A_472477510 chr5A 472477510 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 472479490 472480873 1384 3 0.216763005780347 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G258100 chr5A_473021496 chr5A 473021496 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 473020789 473025314 4526 5 0.110472823685373 RFvsST 286678925 609619180 322940256 no 245.259907228474 TraesCS5A01G258100 chr5A_473023881 chr5A 473023881 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 473020789 473025314 4526 5 0.110472823685373 RFvsST 286678925 609619180 322940256 no 245.259907228474 TraesCS5A01G258100 chr5A_473021769 chr5A 473021769 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 473020789 473025314 4526 5 0.110472823685373 RFvsST 286678925 609619180 322940256 no 245.259907228474 TraesCS5A01G258100 chr5A_473021401 chr5A 473021401 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 473020789 473025314 4526 5 0.110472823685373 RFvsST 286678925 609619180 322940256 no 245.259907228474 TraesCS5A01G258100 chr5A_473021393 chr5A 473021393 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 473020789 473025314 4526 5 0.110472823685373 RFvsST 286678925 609619180 322940256 no 245.259907228474 TraesCS5A01G259200 chr5A_473634607 chr5A 473634607 A G A G 3 synonymous_variant LOW transcript unique_Triplet 473625207 473634785 9579 1 0.0104395030796534 RFvsST 286678925 609619180 322940256 no 77.2542754680561 TraesCS5A01G261700 chr5A_475373131 chr5A 475373131 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 475373464 475376414 2951 1 0.0338868180277872 RFvsST 286678925 609619180 322940256 no 62.4985730930392 TraesCS5A01G263500 chr5A_476402743 chr5A 476402743 T G T G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 476402396 476404030 1635 1 0.0611620795107034 RFvsST 286678925 609619180 322940256 no 1009.97029946595 TraesCS5A01G264300 chr5A_476666159 chr5A 476666159 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 476666218 476666577 360 1 0.277777777777778 RFvsST 286678925 609619180 322940256 no 86.8465191364164 TraesCS5A01G264800 chr5A_476838103 chr5A 476838103 C C G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 476835729 476838246 2518 2 0.079428117553614 RFvsST 286678925 609619180 322940256 no 103.04447295945 TraesCS5A01G264800 chr5A_476837907 chr5A 476837907 C C T T 4 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 476835729 476838246 2518 2 0.079428117553614 RFvsST 286678925 609619180 322940256 no 103.04447295945 TraesCS5A01G267100 chr5A_478820958 chr5A 478820958 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 478816240 478821265 5026 1 0.0198965380023876 RFvsST 286678925 609619180 322940256 no 53.6848936456955 TraesCS5A01G268100 chr5A_478898569 chr5A 478898569 G G A A 4 synonymous_variant LOW transcript unique_Triplet 478896750 478899729 2980 1 0.0335570469798658 RFvsST 286678925 609619180 322940256 no 571.216530764767 TraesCS5A01G269800 chr5A_480337525 chr5A 480337525 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 480334855 480337272 2418 1 0.0413564929693962 RFvsST 286678925 609619180 322940256 no 4357.36943205731 TraesCS5A01G270900 chr5A_481665299 chr5A 481665299 C C T T 4 synonymous_variant LOW transcript unique_Triplet 481665273 481669992 4720 2 0.0423728813559322 RFvsST 286678925 609619180 322940256 no 112.896467155024 TraesCS5A01G270900 chr5A_481670337 chr5A 481670337 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 481665273 481669992 4720 2 0.0423728813559322 RFvsST 286678925 609619180 322940256 no 112.896467155024 TraesCS5A01G271200 chr5A_481896757 chr5A 481896757 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 481893488 481895166 1679 4 0.238237045860631 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G271200 chr5A_481896721 chr5A 481896721 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 481893488 481895166 1679 4 0.238237045860631 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G271200 chr5A_481896719 chr5A 481896719 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 481893488 481895166 1679 4 0.238237045860631 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G271200 chr5A_481896860 chr5A 481896860 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 481893488 481895166 1679 4 0.238237045860631 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G271300 chr5A_481900784 chr5A 481900784 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 481895424 481896362 939 1 0.106496272630458 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G271400 chr5A_481899301 chr5A 481899301 A A G G 4 synonymous_variant LOW transcript unique_Triplet 481896862 481899682 2821 1 0.0354484225451967 RFvsST 286678925 609619180 322940256 no 63.3439173749193 TraesCS5A01G271500 chr5A_481902982 chr5A 481902982 G G A A 4 missense_variant MODERATE transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G271500 chr5A_481903179 chr5A 481903179 G G A A 4 synonymous_variant LOW transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G271500 chr5A_481903082 chr5A 481903082 C C G G 4 missense_variant MODERATE transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G271500 chr5A_481901424 chr5A 481901424 G G A A 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G271500 chr5A_481903353 chr5A 481903353 C C G G 4 synonymous_variant LOW transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G271500 chr5A_481902902 chr5A 481902902 T T C C 4 missense_variant MODERATE transcript unique_Triplet 481900792 481904262 3471 6 0.17286084701815 RFvsST 286678925 609619180 322940256 no 178.967058683937 TraesCS5A01G277500 chr5A_487365186 chr5A 487365186 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 487365075 487366259 1185 1 0.0843881856540084 RFvsST 286678925 609619180 322940256 no 682.186028636473 TraesCS5A01G277800 chr5A_487685129 chr5A 487685129 G G A A 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487684954 chr5A 487684954 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487684654 chr5A 487684654 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487684596 chr5A 487684596 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487684448 chr5A 487684448 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686659 chr5A 487686659 T T G G 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686197 chr5A 487686197 A A G G 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487685710 chr5A 487685710 T T C C 4 synonymous_variant LOW transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686530 chr5A 487686530 T T A A 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686597 chr5A 487686597 T T C C 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487685704 chr5A 487685704 C C T T 4 stop_gained HIGH transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686485 chr5A 487686485 C C T T 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G277800 chr5A_487686353 chr5A 487686353 G G A A 4 missense_variant MODERATE transcript non_Triplet 487685035 487686798 1764 13 0.736961451247165 RFvsST 286678925 609619180 322940256 no 200.035498087187 TraesCS5A01G279200 chr5A_488264336 chr5A 488264336 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 488262403 488264591 2189 1 0.0456829602558246 RFvsST 286678925 609619180 322940256 no 232.716095471465 TraesCS5A01G279400 chr5A_488315956 chr5A 488315956 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 488315727 488317551 1825 1 0.0547945205479452 RFvsST 286678925 609619180 322940256 no 65.4328283383664 TraesCS5A01G280800 chr5A_489934589 chr5A 489934589 C C T T 4 synonymous_variant LOW transcript unique_Triplet 489933114 489934844 1731 1 0.0577700751010976 RFvsST 286678925 609619180 322940256 no 105.680582726431 TraesCS5A01G294600 chr5A_503520210 chr5A 503520210 C T C T 3 synonymous_variant LOW transcript unique_Triplet 503518062 503522610 4549 2 0.043965706748736 RFvsST 286678925 609619180 322940256 no 120.733763337898 TraesCS5A01G294600 chr5A_503518096 chr5A 503518096 C T C T 3 missense_variant MODERATE transcript unique_Triplet 503518062 503522610 4549 2 0.043965706748736 RFvsST 286678925 609619180 322940256 no 120.733763337898 TraesCS5A01G295100 chr5A_503781791 chr5A 503781791 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 503776182 503781751 5570 5 0.0897666068222621 RFvsST 286678925 609619180 322940256 no 348.328901595585 TraesCS5A01G295100 chr5A_503782973 chr5A 503782973 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 503776182 503781751 5570 5 0.0897666068222621 RFvsST 286678925 609619180 322940256 no 348.328901595585 TraesCS5A01G295100 chr5A_503776124 chr5A 503776124 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 503776182 503781751 5570 5 0.0897666068222621 RFvsST 286678925 609619180 322940256 no 348.328901595585 TraesCS5A01G295100 chr5A_503776203 chr5A 503776203 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503776182 503781751 5570 5 0.0897666068222621 RFvsST 286678925 609619180 322940256 no 348.328901595585 TraesCS5A01G295100 chr5A_503777763 chr5A 503777763 A G A G 3 missense_variant MODERATE transcript unique_Triplet 503776182 503781751 5570 5 0.0897666068222621 RFvsST 286678925 609619180 322940256 no 348.328901595585 TraesCS5A01G295200 chr5A_503788458 chr5A 503788458 C G C G 3 missense_variant MODERATE transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503784952 chr5A 503784952 A G A G 3 missense_variant MODERATE transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503788457 chr5A 503788457 G G A A 4 missense_variant MODERATE transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503784726 chr5A 503784726 T G T G 3 synonymous_variant LOW transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503788378 chr5A 503788378 G A G A 3 synonymous_variant LOW transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503785485 chr5A 503785485 A G A G 3 synonymous_variant LOW transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295200 chr5A_503788470 chr5A 503788470 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 503783117 503788467 5351 7 0.130816669781349 RFvsST 286678925 609619180 322940256 no 286.006112502587 TraesCS5A01G295400 chr5A_503873770 chr5A 503873770 G G A A 4 synonymous_variant LOW transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295400 chr5A_503872887 chr5A 503872887 C A C A 3 missense_variant MODERATE transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295400 chr5A_503872586 chr5A 503872586 A A G G 4 missense_variant MODERATE transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295400 chr5A_503873410 chr5A 503873410 C C A A 4 missense_variant MODERATE transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295400 chr5A_503874885 chr5A 503874885 G G C C 4 synonymous_variant LOW transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295400 chr5A_503874183 chr5A 503874183 C C A A 4 stop_gained HIGH transcript non_Triplet 503872199 503874965 2767 6 0.216841344416335 RFvsST 286678925 609619180 322940256 no 133.418811259557 TraesCS5A01G295700 chr5A_503947448 chr5A 503947448 G G T T 4 synonymous_variant LOW transcript unique_Triplet 503941562 503947466 5905 1 0.0169348010160881 RFvsST 286678925 609619180 322940256 no 41.5439607544394 TraesCS5A01G295900 chr5A_504573805 chr5A 504573805 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 504566978 504573657 6680 4 0.0598802395209581 RFvsST 286678925 609619180 322940256 no 74.3870238280018 TraesCS5A01G295900 chr5A_504567412 chr5A 504567412 C T C T 3 missense_variant MODERATE transcript non_Triplet 504566978 504573657 6680 4 0.0598802395209581 RFvsST 286678925 609619180 322940256 no 74.3870238280018 TraesCS5A01G295900 chr5A_504573907 chr5A 504573907 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 504566978 504573657 6680 4 0.0598802395209581 RFvsST 286678925 609619180 322940256 no 74.3870238280018 TraesCS5A01G295900 chr5A_504567587 chr5A 504567587 C C T T 4 intron_variant MODIFIER transcript non_Triplet 504566978 504573657 6680 4 0.0598802395209581 RFvsST 286678925 609619180 322940256 no 74.3870238280018 TraesCS5A01G296000 chr5A_504576352 chr5A 504576352 C C A A 4 missense_variant MODERATE transcript non_Triplet 504576199 504576528 330 1 0.303030303030303 RFvsST 286678925 609619180 322940256 no 65.6229061292211 TraesCS5A01G296300 chr5A_504775887 chr5A 504775887 C T C T 3 missense_variant MODERATE transcript unique_Triplet 504772707 504775991 3285 3 0.091324200913242 RFvsST 286678925 609619180 322940256 no 90.4104028006182 TraesCS5A01G296300 chr5A_504779916 chr5A 504779916 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504772707 504775991 3285 3 0.091324200913242 RFvsST 286678925 609619180 322940256 no 90.4104028006182 TraesCS5A01G296300 chr5A_504780676 chr5A 504780676 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504772707 504775991 3285 3 0.091324200913242 RFvsST 286678925 609619180 322940256 no 90.4104028006182 TraesCS5A01G296400 chr5A_504781472 chr5A 504781472 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504778214 504779835 1622 4 0.246609124537608 RFvsST 286678925 609619180 322940256 no 178.670504704751 TraesCS5A01G296400 chr5A_504781260 chr5A 504781260 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504778214 504779835 1622 4 0.246609124537608 RFvsST 286678925 609619180 322940256 no 178.670504704751 TraesCS5A01G296400 chr5A_504781448 chr5A 504781448 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504778214 504779835 1622 4 0.246609124537608 RFvsST 286678925 609619180 322940256 no 178.670504704751 TraesCS5A01G296400 chr5A_504781178 chr5A 504781178 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504778214 504779835 1622 4 0.246609124537608 RFvsST 286678925 609619180 322940256 no 178.670504704751 TraesCS5A01G296500 chr5A_504783952 chr5A 504783952 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 504781600 504783558 1959 2 0.102092904543134 RFvsST 286678925 609619180 322940256 no 141.581588229835 TraesCS5A01G296500 chr5A_504783189 chr5A 504783189 T T C C 4 missense_variant MODERATE transcript non_Triplet 504781600 504783558 1959 2 0.102092904543134 RFvsST 286678925 609619180 322940256 no 141.581588229835 TraesCS5A01G296600 chr5A_504852056 chr5A 504852056 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 504852122 504855547 3426 1 0.0291885580852306 RFvsST 286678925 609619180 322940256 no 164.033800866417 TraesCS5A01G297000 chr5A_504873247 chr5A 504873247 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 504875950 504881354 5405 2 0.0370027752081406 RFvsST 286678925 609619180 322940256 no 13.8908980065762 TraesCS5A01G297000 chr5A_504873440 chr5A 504873440 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 504875950 504881354 5405 2 0.0370027752081406 RFvsST 286678925 609619180 322940256 no 13.8908980065762 TraesCS5A01G297100 chr5A_504955466 chr5A 504955466 C C T T 4 synonymous_variant LOW transcript unique_Triplet 504955243 504955976 734 2 0.272479564032698 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G297100 chr5A_504955525 chr5A 504955525 T T C C 4 missense_variant MODERATE transcript unique_Triplet 504955243 504955976 734 2 0.272479564032698 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G297300 chr5A_505018726 chr5A 505018726 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 505018900 505023557 4658 1 0.021468441391155 RFvsST 286678925 609619180 322940256 no 27.4995134599843 TraesCS5A01G297900 chr5A_505506271 chr5A 505506271 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 505503022 505506319 3298 2 0.0606428138265616 RFvsST 286678925 609619180 322940256 no 54.3320691199971 TraesCS5A01G297900 chr5A_505506311 chr5A 505506311 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 505503022 505506319 3298 2 0.0606428138265616 RFvsST 286678925 609619180 322940256 no 54.3320691199971 TraesCS5A01G298200 chr5A_505589280 chr5A 505589280 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 505589268 505596795 7528 2 0.026567481402763 RFvsST 286678925 609619180 322940256 no 56.3668376040365 TraesCS5A01G298200 chr5A_505596624 chr5A 505596624 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 505589268 505596795 7528 2 0.026567481402763 RFvsST 286678925 609619180 322940256 no 56.3668376040365 TraesCS5A01G298300 chr5A_505596835 chr5A 505596835 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 505597939 505599484 1546 2 0.129366106080207 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G298300 chr5A_505597052 chr5A 505597052 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 505597939 505599484 1546 2 0.129366106080207 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G298500 chr5A_505611755 chr5A 505611755 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 505610220 505613309 3090 2 0.0647249190938511 RFvsST 286678925 609619180 322940256 no 25.3304085623985 TraesCS5A01G298500 chr5A_505611756 chr5A 505611756 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 505610220 505613309 3090 2 0.0647249190938511 RFvsST 286678925 609619180 322940256 no 25.3304085623985 TraesCS5A01G298800 chr5A_506142081 chr5A 506142081 A A G G 4 synonymous_variant LOW transcript unique_Triplet 506130407 506142210 11804 1 0.0084717045069468 RFvsST 286678925 609619180 322940256 no 115.736305777164 TraesCS5A01G299300 chr5A_508872088 chr5A 508872088 T T C C 4 synonymous_variant LOW transcript unique_Triplet 508869299 508873265 3967 1 0.0252079657171666 RFvsST 286678925 609619180 322940256 no 343.062076900272 TraesCS5A01G300800 chr5A_510078493 chr5A 510078493 G A G A 3 missense_variant MODERATE transcript non_Triplet 510077720 510078694 975 3 0.307692307692308 RFvsST 286678925 609619180 322940256 no 616.542119642024 TraesCS5A01G300800 chr5A_510078395 chr5A 510078395 G G A A 4 synonymous_variant LOW transcript non_Triplet 510077720 510078694 975 3 0.307692307692308 RFvsST 286678925 609619180 322940256 no 616.542119642024 TraesCS5A01G300800 chr5A_510077664 chr5A 510077664 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 510077720 510078694 975 3 0.307692307692308 RFvsST 286678925 609619180 322940256 no 616.542119642024 TraesCS5A01G301000 chr5A_510159847 chr5A 510159847 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 510160228 510161421 1194 2 0.16750418760469 RFvsST 286678925 609619180 322940256 no 35.9599469246205 TraesCS5A01G301000 chr5A_510161142 chr5A 510161142 G G A A 4 missense_variant MODERATE transcript non_Triplet 510160228 510161421 1194 2 0.16750418760469 RFvsST 286678925 609619180 322940256 no 35.9599469246205 TraesCS5A01G301100 chr5A_510184968 chr5A 510184968 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 510184984 510186680 1697 4 0.235710076605775 RFvsST 286678925 609619180 322940256 no 282.064659356723 TraesCS5A01G301100 chr5A_510185098 chr5A 510185098 G C G C 3 missense_variant MODERATE transcript non_Triplet 510184984 510186680 1697 4 0.235710076605775 RFvsST 286678925 609619180 322940256 no 282.064659356723 TraesCS5A01G301100 chr5A_510185124 chr5A 510185124 C C T T 4 splice_region_variant&intron_variant LOW transcript non_Triplet 510184984 510186680 1697 4 0.235710076605775 RFvsST 286678925 609619180 322940256 no 282.064659356723 TraesCS5A01G301100 chr5A_510184939 chr5A 510184939 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 510184984 510186680 1697 4 0.235710076605775 RFvsST 286678925 609619180 322940256 no 282.064659356723 TraesCS5A01G301400 chr5A_510288585 chr5A 510288585 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 510288589 510290370 1782 2 0.112233445566779 RFvsST 286678925 609619180 322940256 no 31.4099655527944 TraesCS5A01G301400 chr5A_510288500 chr5A 510288500 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 510288589 510290370 1782 2 0.112233445566779 RFvsST 286678925 609619180 322940256 no 31.4099655527944 TraesCS5A01G301800 chr5A_510555057 chr5A 510555057 C C T T 4 missense_variant MODERATE transcript unique_Triplet 510552180 510558083 5904 2 0.0338753387533875 RFvsST 286678925 609619180 322940256 no 53.9108769053215 TraesCS5A01G301800 chr5A_510555664 chr5A 510555664 A A G G 4 synonymous_variant LOW transcript unique_Triplet 510552180 510558083 5904 2 0.0338753387533875 RFvsST 286678925 609619180 322940256 no 53.9108769053215 TraesCS5A01G302100 chr5A_510912197 chr5A 510912197 T T A A 4 missense_variant MODERATE transcript non_Triplet 510909754 510913544 3791 1 0.0263782643102084 RFvsST 286678925 609619180 322940256 no 264.860523639215 TraesCS5A01G302300 chr5A_511877258 chr5A 511877258 C C T T 4 missense_variant MODERATE transcript unique_Triplet 511877160 511881784 4625 3 0.0648648648648649 RFvsST 286678925 609619180 322940256 no 20.2046853692349 TraesCS5A01G302300 chr5A_511879755 chr5A 511879755 T C T C 3 synonymous_variant LOW transcript unique_Triplet 511877160 511881784 4625 3 0.0648648648648649 RFvsST 286678925 609619180 322940256 no 20.2046853692349 TraesCS5A01G302300 chr5A_511879083 chr5A 511879083 T T G G 4 missense_variant MODERATE transcript unique_Triplet 511877160 511881784 4625 3 0.0648648648648649 RFvsST 286678925 609619180 322940256 no 20.2046853692349 TraesCS5A01G303100 chr5A_512258815 chr5A 512258815 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 512253127 512257558 4432 1 0.0225631768953069 RFvsST 286678925 609619180 322940256 no 166.903889661452 TraesCS5A01G305200 chr5A_514095940 chr5A 514095940 C T C T 3 missense_variant MODERATE transcript non_Triplet 514093135 514096373 3239 1 0.0308737264587836 RFvsST 286678925 609619180 322940256 no 1169.35367018806 TraesCS5A01G307300 chr5A_519951786 chr5A 519951786 C T C T 3 synonymous_variant LOW transcript unique_Triplet 519945130 519956066 10937 1 0.0091432751211484 RFvsST 286678925 609619180 322940256 no 153.738842781643 TraesCS5A01G309800 chr5A_522057701 chr5A 522057701 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 522056296 522058796 2501 1 0.039984006397441 RFvsST 286678925 609619180 322940256 no 1167.84282067891 TraesCS5A01G309900 chr5A_522064765 chr5A 522064765 G A G A 3 missense_variant MODERATE transcript unique_Triplet 522061845 522065289 3445 1 0.0290275761973875 RFvsST 286678925 609619180 322940256 no 190.977550250375 TraesCS5A01G310800 chr5A_522605151 chr5A 522605151 C G C G 3 synonymous_variant LOW transcript non_Triplet 522604914 522611884 6971 2 0.0286902883373978 RFvsST 286678925 609619180 322940256 no 23.1757466405753 TraesCS5A01G310800 chr5A_522605176 chr5A 522605176 T G T G 3 missense_variant MODERATE transcript non_Triplet 522604914 522611884 6971 2 0.0286902883373978 RFvsST 286678925 609619180 322940256 no 23.1757466405753 TraesCS5A01G311300 chr5A_523016017 chr5A 523016017 G G A A 4 missense_variant MODERATE transcript non_Triplet 523015457 523016095 639 1 0.156494522691706 RFvsST 286678925 609619180 322940256 no 308.463472975573 TraesCS5A01G312700 chr5A_524049793 chr5A 524049793 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 524047919 524049832 1914 3 0.156739811912226 RFvsST 286678925 609619180 322940256 no 76.8531078436424 TraesCS5A01G312700 chr5A_524049517 chr5A 524049517 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 524047919 524049832 1914 3 0.156739811912226 RFvsST 286678925 609619180 322940256 no 76.8531078436424 TraesCS5A01G312700 chr5A_524047694 chr5A 524047694 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 524047919 524049832 1914 3 0.156739811912226 RFvsST 286678925 609619180 322940256 no 76.8531078436424 TraesCS5A01G312800 chr5A_524052734 chr5A 524052734 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 524051819 524054467 2649 1 0.0377500943752359 RFvsST 286678925 609619180 322940256 no 25.0354148657233 TraesCS5A01G313200 chr5A_524244279 chr5A 524244279 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 524241614 524247123 5510 4 0.0725952813067151 RFvsST 286678925 609619180 322940256 no 148.895080029819 TraesCS5A01G313200 chr5A_524245133 chr5A 524245133 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 524241614 524247123 5510 4 0.0725952813067151 RFvsST 286678925 609619180 322940256 no 148.895080029819 TraesCS5A01G313200 chr5A_524245503 chr5A 524245503 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 524241614 524247123 5510 4 0.0725952813067151 RFvsST 286678925 609619180 322940256 no 148.895080029819 TraesCS5A01G313200 chr5A_524247128 chr5A 524247128 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 524241614 524247123 5510 4 0.0725952813067151 RFvsST 286678925 609619180 322940256 no 148.895080029819 TraesCS5A01G314000 chr5A_524671090 chr5A 524671090 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 524670970 524674026 3057 2 0.0654236179260713 RFvsST 286678925 609619180 322940256 no 431.159581575666 TraesCS5A01G314000 chr5A_524671184 chr5A 524671184 C A C A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 524670970 524674026 3057 2 0.0654236179260713 RFvsST 286678925 609619180 322940256 no 431.159581575666 TraesCS5A01G314800 chr5A_525117667 chr5A 525117667 C G C G 3 synonymous_variant LOW transcript unique_Triplet 525116056 525117885 1830 1 0.0546448087431694 RFvsST 286678925 609619180 322940256 no 57.384130553967 TraesCS5A01G315700 chr5A_526397263 chr5A 526397263 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G315700 chr5A_526397364 chr5A 526397364 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G315700 chr5A_526396953 chr5A 526396953 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G315700 chr5A_526398696 chr5A 526398696 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G315700 chr5A_526397474 chr5A 526397474 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G315700 chr5A_526397576 chr5A 526397576 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 526393791 526396666 2876 6 0.208623087621697 RFvsST 286678925 609619180 322940256 no 81.5908370859299 TraesCS5A01G316100 chr5A_526579001 chr5A 526579001 A C A C 3 missense_variant MODERATE transcript unique_Triplet 526576501 526579029 2529 1 0.0395413206801107 RFvsST 286678925 609619180 322940256 no 3.43367282632747 TraesCS5A01G316500 chr5A_526659750 chr5A 526659750 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 526656176 526660726 4551 2 0.0439463854098 RFvsST 286678925 609619180 322940256 no 257.436962198233 TraesCS5A01G316500 chr5A_526659533 chr5A 526659533 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 526656176 526660726 4551 2 0.0439463854098 RFvsST 286678925 609619180 322940256 no 257.436962198233 TraesCS5A01G316600 chr5A_527490746 chr5A 527490746 C G C G 3 synonymous_variant LOW transcript non_Triplet 527489845 527491552 1708 2 0.117096018735363 RFvsST 286678925 609619180 322940256 no 344.337299624625 TraesCS5A01G316600 chr5A_527490443 chr5A 527490443 G G T T 4 missense_variant MODERATE transcript non_Triplet 527489845 527491552 1708 2 0.117096018735363 RFvsST 286678925 609619180 322940256 no 344.337299624625 TraesCS5A01G316700 chr5A_527846231 chr5A 527846231 A G A G 3 synonymous_variant LOW transcript unique_Triplet 527844579 527846876 2298 2 0.0870322019147084 RFvsST 286678925 609619180 322940256 no 43.1389732478128 TraesCS5A01G316700 chr5A_527844934 chr5A 527844934 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 527844579 527846876 2298 2 0.0870322019147084 RFvsST 286678925 609619180 322940256 no 43.1389732478128 TraesCS5A01G317100 chr5A_528114650 chr5A 528114650 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 528110836 528114741 3906 2 0.0512032770097286 RFvsST 286678925 609619180 322940256 no 1044.47368817923 TraesCS5A01G317100 chr5A_528114675 chr5A 528114675 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 528110836 528114741 3906 2 0.0512032770097286 RFvsST 286678925 609619180 322940256 no 1044.47368817923 TraesCS5A01G317600 chr5A_528489294 chr5A 528489294 A A C C 4 missense_variant MODERATE transcript non_Triplet 528488445 528490157 1713 1 0.0583771161704612 RFvsST 286678925 609619180 322940256 no 88.4719610457006 TraesCS5A01G317900 chr5A_528603847 chr5A 528603847 C C T T 4 synonymous_variant LOW transcript non_Triplet 528603556 528604138 583 1 0.171526586620926 RFvsST 286678925 609619180 322940256 no 21.8049131856213 TraesCS5A01G318000 chr5A_528891785 chr5A 528891785 G G C C 4 missense_variant MODERATE transcript non_Triplet 528890769 528892403 1635 2 0.122324159021407 RFvsST 286678925 609619180 322940256 no 248.896055581678 TraesCS5A01G318000 chr5A_528892058 chr5A 528892058 A A C C 4 synonymous_variant LOW transcript non_Triplet 528890769 528892403 1635 2 0.122324159021407 RFvsST 286678925 609619180 322940256 no 248.896055581678 TraesCS5A01G318200 chr5A_528935968 chr5A 528935968 A A G G 4 synonymous_variant LOW transcript unique_Triplet 528935399 528944100 8702 1 0.0114916111238796 RFvsST 286678925 609619180 322940256 no 490.974146152816 TraesCS5A01G318500 chr5A_529095477 chr5A 529095477 T T C C 4 synonymous_variant LOW transcript unique_Triplet 529089027 529096694 7668 2 0.0260824204486176 RFvsST 286678925 609619180 322940256 no 46.9400180791287 TraesCS5A01G318500 chr5A_529095573 chr5A 529095573 G G A A 4 synonymous_variant LOW transcript unique_Triplet 529089027 529096694 7668 2 0.0260824204486176 RFvsST 286678925 609619180 322940256 no 46.9400180791287 TraesCS5A01G318900 chr5A_529369035 chr5A 529369035 C C A A 4 missense_variant MODERATE transcript unique_Triplet 529368805 529369134 330 1 0.303030303030303 RFvsST 286678925 609619180 322940256 no 114.582087637939 TraesCS5A01G319800 chr5A_533023381 chr5A 533023381 T T C C 4 missense_variant MODERATE transcript unique_Triplet 533020806 533024315 3510 1 0.0284900284900285 RFvsST 286678925 609619180 322940256 no 445.587882408978 TraesCS5A01G319900 chr5A_533071439 chr5A 533071439 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 533071664 533073141 1478 1 0.06765899864682 RFvsST 286678925 609619180 322940256 no 57.4686098195394 TraesCS5A01G326000 chr5A_536677334 chr5A 536677334 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 536675069 536676328 1260 4 0.317460317460317 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G326000 chr5A_536679679 chr5A 536679679 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 536675069 536676328 1260 4 0.317460317460317 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G326000 chr5A_536678901 chr5A 536678901 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 536675069 536676328 1260 4 0.317460317460317 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G326000 chr5A_536677319 chr5A 536677319 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 536675069 536676328 1260 4 0.317460317460317 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G329400 chr5A_538320812 chr5A 538320812 T A T A 3 missense_variant MODERATE transcript unique_Triplet 538317664 538322519 4856 1 0.0205930807248764 RFvsST 286678925 609619180 322940256 no 364.838145269845 TraesCS5A01G330500 chr5A_540052878 chr5A 540052878 C A C A 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052080 chr5A 540052080 A G A G 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052877 chr5A 540052877 C G C G 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052138 chr5A 540052138 T C T C 3 synonymous_variant LOW transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052751 chr5A 540052751 T T G G 4 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540054288 chr5A 540054288 T C T C 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540053290 chr5A 540053290 A G A G 3 synonymous_variant LOW transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052567 chr5A 540052567 T G T G 3 synonymous_variant LOW transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540053372 chr5A 540053372 A G A G 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330500 chr5A_540052568 chr5A 540052568 T C T C 3 missense_variant MODERATE transcript unique_Triplet 540051920 540054655 2736 10 0.365497076023392 RFvsST 286678925 609619180 322940256 no 1729.65009423088 TraesCS5A01G330700 chr5A_540063793 chr5A 540063793 A C A C 3 missense_variant MODERATE transcript unique_Triplet 540060449 540064077 3629 1 0.0275558004960044 RFvsST 286678925 609619180 322940256 no 322.960941525943 TraesCS5A01G330900 chr5A_540285454 chr5A 540285454 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 540280820 540285706 4887 2 0.0409249028033558 RFvsST 286678925 609619180 322940256 no 41.2707503187421 TraesCS5A01G330900 chr5A_540284697 chr5A 540284697 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 540280820 540285706 4887 2 0.0409249028033558 RFvsST 286678925 609619180 322940256 no 41.2707503187421 TraesCS5A01G331000 chr5A_540285817 chr5A 540285817 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 540289584 540292953 3370 1 0.029673590504451 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G331800 chr5A_540394062 chr5A 540394062 G A G A 3 synonymous_variant LOW transcript unique_Triplet 540393729 540394976 1248 1 0.0801282051282051 RFvsST 286678925 609619180 322940256 no 59.9836104825626 TraesCS5A01G335200 chr5A_544512225 chr5A 544512225 G G A A 4 missense_variant MODERATE transcript non_Triplet 544512184 544515425 3242 1 0.0308451573103023 RFvsST 286678925 609619180 322940256 no 177.94557357573 TraesCS5A01G335500 chr5A_544568655 chr5A 544568655 A A G G 4 missense_variant MODERATE transcript unique_Triplet 544565215 544568939 3725 1 0.0268456375838926 RFvsST 286678925 609619180 322940256 no 661.927534059869 TraesCS5A01G338800 chr5A_546525316 chr5A 546525316 G C G C 3 missense_variant MODERATE transcript unique_Triplet 546523469 546531388 7920 1 0.0126262626262626 RFvsST 286678925 609619180 322940256 no 258.900680108099 TraesCS5A01G341200 chr5A_547415476 chr5A 547415476 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 547409317 547412444 3128 1 0.0319693094629156 RFvsST 286678925 609619180 322940256 no 67.8150068625871 TraesCS5A01G342500 chr5A_547646665 chr5A 547646665 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 547644855 547645467 613 1 0.163132137030995 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G342600 chr5A_547647099 chr5A 547647099 A A G G 4 synonymous_variant LOW transcript unique_Triplet 547646865 547652386 5522 1 0.0181093806591815 RFvsST 286678925 609619180 322940256 no 68.5926384940187 TraesCS5A01G344000 chr5A_548504716 chr5A 548504716 T C T C 3 missense_variant MODERATE transcript unique_Triplet 548504696 548507943 3248 2 0.061576354679803 RFvsST 286678925 609619180 322940256 no 197.661664565097 TraesCS5A01G344000 chr5A_548504982 chr5A 548504982 A G A G 3 missense_variant MODERATE transcript unique_Triplet 548504696 548507943 3248 2 0.061576354679803 RFvsST 286678925 609619180 322940256 no 197.661664565097 TraesCS5A01G346300 chr5A_549219075 chr5A 549219075 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 549214634 549215068 435 1 0.229885057471264 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G348500 chr5A_552078497 chr5A 552078497 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 552078011 552078447 437 3 0.68649885583524 RFvsST 286678925 609619180 322940256 no 158.463523990597 TraesCS5A01G348500 chr5A_552078382 chr5A 552078382 G C G C 3 synonymous_variant LOW transcript non_Triplet 552078011 552078447 437 3 0.68649885583524 RFvsST 286678925 609619180 322940256 no 158.463523990597 TraesCS5A01G348500 chr5A_552078379 chr5A 552078379 G C G C 3 synonymous_variant LOW transcript non_Triplet 552078011 552078447 437 3 0.68649885583524 RFvsST 286678925 609619180 322940256 no 158.463523990597 TraesCS5A01G349500 chr5A_552523503 chr5A 552523503 A G A G 3 synonymous_variant LOW transcript unique_Triplet 552522546 552526933 4388 5 0.113947128532361 RFvsST 286678925 609619180 322940256 no 640.539722005968 TraesCS5A01G349500 chr5A_552524429 chr5A 552524429 G C G C 3 missense_variant MODERATE transcript unique_Triplet 552522546 552526933 4388 5 0.113947128532361 RFvsST 286678925 609619180 322940256 no 640.539722005968 TraesCS5A01G349500 chr5A_552523174 chr5A 552523174 C T C T 3 missense_variant MODERATE transcript unique_Triplet 552522546 552526933 4388 5 0.113947128532361 RFvsST 286678925 609619180 322940256 no 640.539722005968 TraesCS5A01G349500 chr5A_552524906 chr5A 552524906 A G A G 3 missense_variant MODERATE transcript unique_Triplet 552522546 552526933 4388 5 0.113947128532361 RFvsST 286678925 609619180 322940256 no 640.539722005968 TraesCS5A01G349500 chr5A_552523257 chr5A 552523257 C T C T 3 synonymous_variant LOW transcript unique_Triplet 552522546 552526933 4388 5 0.113947128532361 RFvsST 286678925 609619180 322940256 no 640.539722005968 TraesCS5A01G350200 chr5A_552954223 chr5A 552954223 A G A G 3 missense_variant MODERATE transcript unique_Triplet 552954180 552958940 4761 1 0.0210039907582441 RFvsST 286678925 609619180 322940256 no 66.9025219745462 TraesCS5A01G356300 chr5A_558684533 chr5A 558684533 G C G C 3 missense_variant MODERATE transcript unique_Triplet 558683014 558684572 1559 1 0.064143681847338 RFvsST 286678925 609619180 322940256 no 56.2575700201756 TraesCS5A01G356700 chr5A_559014669 chr5A 559014669 C C A A 4 missense_variant MODERATE transcript unique_Triplet 559012838 559015737 2900 3 0.103448275862069 RFvsST 286678925 609619180 322940256 no 251.933747485976 TraesCS5A01G356700 chr5A_559012722 chr5A 559012722 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 559012838 559015737 2900 3 0.103448275862069 RFvsST 286678925 609619180 322940256 no 251.933747485976 TraesCS5A01G356700 chr5A_559015746 chr5A 559015746 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 559012838 559015737 2900 3 0.103448275862069 RFvsST 286678925 609619180 322940256 no 251.933747485976 TraesCS5A01G359100 chr5A_561172375 chr5A 561172375 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359100 chr5A_561172374 chr5A 561172374 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359100 chr5A_561175296 chr5A 561175296 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359100 chr5A_561173979 chr5A 561173979 C T C T 3 missense_variant MODERATE transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359100 chr5A_561174871 chr5A 561174871 C T C T 3 synonymous_variant LOW transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359100 chr5A_561175448 chr5A 561175448 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 561173966 561175194 1229 6 0.48820179007323 RFvsST 286678925 609619180 322940256 no 36.1114331804653 TraesCS5A01G359800 chr5A_561660942 chr5A 561660942 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 561654948 561657253 2306 2 0.0867302688638335 RFvsST 286678925 609619180 322940256 no 748.014214725023 TraesCS5A01G359800 chr5A_561660767 chr5A 561660767 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 561654948 561657253 2306 2 0.0867302688638335 RFvsST 286678925 609619180 322940256 no 748.014214725023 TraesCS5A01G359900 chr5A_561661114 chr5A 561661114 C T C T 3 missense_variant MODERATE transcript unique_Triplet 561660944 561666221 5278 3 0.0568397120121258 RFvsST 286678925 609619180 322940256 no 34.8630233561504 TraesCS5A01G359900 chr5A_561665074 chr5A 561665074 A G A G 3 synonymous_variant LOW transcript unique_Triplet 561660944 561666221 5278 3 0.0568397120121258 RFvsST 286678925 609619180 322940256 no 34.8630233561504 TraesCS5A01G359900 chr5A_561664230 chr5A 561664230 G A G A 3 synonymous_variant LOW transcript unique_Triplet 561660944 561666221 5278 3 0.0568397120121258 RFvsST 286678925 609619180 322940256 no 34.8630233561504 TraesCS5A01G360000 chr5A_561693060 chr5A 561693060 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 561692882 561693608 727 3 0.412654745529574 RFvsST 286678925 609619180 322940256 no 360.051182231383 TraesCS5A01G360000 chr5A_561693130 chr5A 561693130 G A G A 3 synonymous_variant LOW transcript unique_Triplet 561692882 561693608 727 3 0.412654745529574 RFvsST 286678925 609619180 322940256 no 360.051182231383 TraesCS5A01G360000 chr5A_561693050 chr5A 561693050 A C A C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 561692882 561693608 727 3 0.412654745529574 RFvsST 286678925 609619180 322940256 no 360.051182231383 TraesCS5A01G360100 chr5A_561810770 chr5A 561810770 C T C T 3 synonymous_variant LOW transcript unique_Triplet 561810561 561812858 2298 5 0.217580504786771 RFvsST 286678925 609619180 322940256 no 104.276096593855 TraesCS5A01G360100 chr5A_561810559 chr5A 561810559 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 561810561 561812858 2298 5 0.217580504786771 RFvsST 286678925 609619180 322940256 no 104.276096593855 TraesCS5A01G360100 chr5A_561810440 chr5A 561810440 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 561810561 561812858 2298 5 0.217580504786771 RFvsST 286678925 609619180 322940256 no 104.276096593855 TraesCS5A01G360100 chr5A_561811146 chr5A 561811146 G A G A 3 missense_variant MODERATE transcript unique_Triplet 561810561 561812858 2298 5 0.217580504786771 RFvsST 286678925 609619180 322940256 no 104.276096593855 TraesCS5A01G360100 chr5A_561810766 chr5A 561810766 A G A G 3 missense_variant MODERATE transcript unique_Triplet 561810561 561812858 2298 5 0.217580504786771 RFvsST 286678925 609619180 322940256 no 104.276096593855 TraesCS5A01G360200 chr5A_561968293 chr5A 561968293 C A C A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 561968230 561973109 4880 5 0.102459016393443 RFvsST 286678925 609619180 322940256 no 405.163462572285 TraesCS5A01G360200 chr5A_561972509 chr5A 561972509 T C T C 3 missense_variant MODERATE transcript unique_Triplet 561968230 561973109 4880 5 0.102459016393443 RFvsST 286678925 609619180 322940256 no 405.163462572285 TraesCS5A01G360200 chr5A_561969342 chr5A 561969342 C T C T 3 synonymous_variant LOW transcript unique_Triplet 561968230 561973109 4880 5 0.102459016393443 RFvsST 286678925 609619180 322940256 no 405.163462572285 TraesCS5A01G360200 chr5A_561972896 chr5A 561972896 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 561968230 561973109 4880 5 0.102459016393443 RFvsST 286678925 609619180 322940256 no 405.163462572285 TraesCS5A01G360200 chr5A_561968292 chr5A 561968292 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 561968230 561973109 4880 5 0.102459016393443 RFvsST 286678925 609619180 322940256 no 405.163462572285 TraesCS5A01G361100 chr5A_562486331 chr5A 562486331 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 562481479 562486290 4812 5 0.103906899418121 RFvsST 286678925 609619180 322940256 no 90.1683916442254 TraesCS5A01G361100 chr5A_562484254 chr5A 562484254 A C A C 3 missense_variant MODERATE transcript unique_Triplet 562481479 562486290 4812 5 0.103906899418121 RFvsST 286678925 609619180 322940256 no 90.1683916442254 TraesCS5A01G361100 chr5A_562484499 chr5A 562484499 T C T C 3 missense_variant MODERATE transcript unique_Triplet 562481479 562486290 4812 5 0.103906899418121 RFvsST 286678925 609619180 322940256 no 90.1683916442254 TraesCS5A01G361100 chr5A_562481699 chr5A 562481699 A G A G 3 synonymous_variant LOW transcript unique_Triplet 562481479 562486290 4812 5 0.103906899418121 RFvsST 286678925 609619180 322940256 no 90.1683916442254 TraesCS5A01G361100 chr5A_562481958 chr5A 562481958 C T C T 3 missense_variant MODERATE transcript unique_Triplet 562481479 562486290 4812 5 0.103906899418121 RFvsST 286678925 609619180 322940256 no 90.1683916442254 TraesCS5A01G361500 chr5A_562862748 chr5A 562862748 G T G T 3 missense_variant MODERATE transcript unique_Triplet 562861246 562865518 4273 1 0.0234027615258601 RFvsST 286678925 609619180 322940256 no 72.1031893993594 TraesCS5A01G362100 chr5A_563327438 chr5A 563327438 A T A T 3 missense_variant MODERATE transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563327720 chr5A 563327720 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563326951 chr5A 563326951 G C G C 3 missense_variant MODERATE transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563316087 chr5A 563316087 T C T C 3 synonymous_variant LOW transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563327499 chr5A 563327499 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563315825 chr5A 563315825 G A G A 3 missense_variant MODERATE transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563317819 chr5A 563317819 C T C T 3 missense_variant MODERATE transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G362100 chr5A_563318490 chr5A 563318490 G A G A 3 missense_variant MODERATE transcript unique_Triplet 563314782 563328014 13233 8 0.0604549232978161 RFvsST 286678925 609619180 322940256 no 618.053092223884 TraesCS5A01G363200 chr5A_563841535 chr5A 563841535 A A C C 4 synonymous_variant LOW transcript non_Triplet 563839556 563843523 3968 3 0.0756048387096774 RFvsST 286678925 609619180 322940256 no 116.067220331495 TraesCS5A01G363200 chr5A_563843119 chr5A 563843119 G G A A 4 missense_variant MODERATE transcript non_Triplet 563839556 563843523 3968 3 0.0756048387096774 RFvsST 286678925 609619180 322940256 no 116.067220331495 TraesCS5A01G363200 chr5A_563843557 chr5A 563843557 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 563839556 563843523 3968 3 0.0756048387096774 RFvsST 286678925 609619180 322940256 no 116.067220331495 TraesCS5A01G363300 chr5A_564073780 chr5A 564073780 G G A A 4 missense_variant MODERATE transcript unique_Triplet 564071639 564074208 2570 4 0.155642023346304 RFvsST 286678925 609619180 322940256 no 127.285691351402 TraesCS5A01G363300 chr5A_564071739 chr5A 564071739 T T C C 4 missense_variant MODERATE transcript unique_Triplet 564071639 564074208 2570 4 0.155642023346304 RFvsST 286678925 609619180 322940256 no 127.285691351402 TraesCS5A01G363300 chr5A_564071034 chr5A 564071034 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564071639 564074208 2570 4 0.155642023346304 RFvsST 286678925 609619180 322940256 no 127.285691351402 TraesCS5A01G363300 chr5A_564073354 chr5A 564073354 C C T T 4 synonymous_variant LOW transcript unique_Triplet 564071639 564074208 2570 4 0.155642023346304 RFvsST 286678925 609619180 322940256 no 127.285691351402 TraesCS5A01G363400 chr5A_564074384 chr5A 564074384 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 564075387 564079303 3917 1 0.0255297421496043 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G364100 chr5A_564497880 chr5A 564497880 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 564495823 564498054 2232 2 0.0896057347670251 RFvsST 286678925 609619180 322940256 no 171.617169526039 TraesCS5A01G364100 chr5A_564497958 chr5A 564497958 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 564495823 564498054 2232 2 0.0896057347670251 RFvsST 286678925 609619180 322940256 no 171.617169526039 TraesCS5A01G365000 chr5A_565391580 chr5A 565391580 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 565393339 565395542 2204 3 0.136116152450091 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G365000 chr5A_565391634 chr5A 565391634 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 565393339 565395542 2204 3 0.136116152450091 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G365000 chr5A_565392502 chr5A 565392502 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 565393339 565395542 2204 3 0.136116152450091 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G365300 chr5A_565490450 chr5A 565490450 A C A C 3 synonymous_variant LOW transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565490571 chr5A 565490571 T A T A 3 missense_variant MODERATE transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565490597 chr5A 565490597 T C T C 3 synonymous_variant LOW transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565490438 chr5A 565490438 C T C T 3 synonymous_variant LOW transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565489085 chr5A 565489085 G C G C 3 missense_variant MODERATE transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565489337 chr5A 565489337 A C A C 3 missense_variant MODERATE transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365300 chr5A_565490183 chr5A 565490183 C T C T 3 synonymous_variant LOW transcript non_Triplet 565488362 565490747 2386 7 0.293378038558257 RFvsST 286678925 609619180 322940256 no 379.445533436689 TraesCS5A01G365800 chr5A_565682923 chr5A 565682923 C T C T 3 synonymous_variant LOW transcript unique_Triplet 565682533 565684319 1787 1 0.0559597090095132 RFvsST 286678925 609619180 322940256 no 414.850410258241 TraesCS5A01G366900 chr5A_567526003 chr5A 567526003 T C T C 3 synonymous_variant LOW transcript unique_Triplet 567523083 567526624 3542 1 0.0282326369282891 RFvsST 286678925 609619180 322940256 no 108.55469705607 TraesCS5A01G367000 chr5A_567691388 chr5A 567691388 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367000 chr5A_567695461 chr5A 567695461 G A G A 3 synonymous_variant LOW transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367000 chr5A_567691316 chr5A 567691316 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367000 chr5A_567697397 chr5A 567697397 G A G A 3 synonymous_variant LOW transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367000 chr5A_567691454 chr5A 567691454 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367000 chr5A_567691457 chr5A 567691457 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 567691510 567697696 6187 6 0.0969775335380637 RFvsST 286678925 609619180 322940256 no 261.225157188696 TraesCS5A01G367300 chr5A_567782714 chr5A 567782714 C T C T 3 synonymous_variant LOW transcript unique_Triplet 567781152 567782867 1716 1 0.0582750582750583 RFvsST 286678925 609619180 322940256 no 110.107188494785 TraesCS5A01G367700 chr5A_567917336 chr5A 567917336 T C T C 3 synonymous_variant LOW transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367700 chr5A_567917976 chr5A 567917976 A T A T 3 missense_variant MODERATE transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367700 chr5A_567922797 chr5A 567922797 T A T A 3 missense_variant MODERATE transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367700 chr5A_567918653 chr5A 567918653 C A C A 3 missense_variant MODERATE transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367700 chr5A_567917814 chr5A 567917814 C T C T 3 missense_variant MODERATE transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367700 chr5A_567926176 chr5A 567926176 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 567916316 567926130 9815 6 0.0611309220580744 RFvsST 286678925 609619180 322940256 no 130.904987089135 TraesCS5A01G367800 chr5A_568157171 chr5A 568157171 T C T C 3 synonymous_variant LOW transcript unique_Triplet 568157117 568159557 2441 2 0.0819336337566571 RFvsST 286678925 609619180 322940256 no 55.5812483075928 TraesCS5A01G367800 chr5A_568157892 chr5A 568157892 A C A C 3 missense_variant MODERATE transcript unique_Triplet 568157117 568159557 2441 2 0.0819336337566571 RFvsST 286678925 609619180 322940256 no 55.5812483075928 TraesCS5A01G367900 chr5A_568164513 chr5A 568164513 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 568159648 568164880 5233 3 0.0573284922606535 RFvsST 286678925 609619180 322940256 no 56.028293980262 TraesCS5A01G367900 chr5A_568160290 chr5A 568160290 A C A C 3 missense_variant MODERATE transcript unique_Triplet 568159648 568164880 5233 3 0.0573284922606535 RFvsST 286678925 609619180 322940256 no 56.028293980262 TraesCS5A01G367900 chr5A_568163121 chr5A 568163121 A G A G 3 synonymous_variant LOW transcript unique_Triplet 568159648 568164880 5233 3 0.0573284922606535 RFvsST 286678925 609619180 322940256 no 56.028293980262 TraesCS5A01G368000 chr5A_568166956 chr5A 568166956 C A C A 3 missense_variant MODERATE transcript unique_Triplet 568166847 568167236 390 2 0.512820512820513 RFvsST 286678925 609619180 322940256 no 42.9702475447405 TraesCS5A01G368000 chr5A_568167167 chr5A 568167167 C G C G 3 missense_variant MODERATE transcript unique_Triplet 568166847 568167236 390 2 0.512820512820513 RFvsST 286678925 609619180 322940256 no 42.9702475447405 TraesCS5A01G368700 chr5A_569217422 chr5A 569217422 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 569217518 569219778 2261 1 0.0442282176028306 RFvsST 286678925 609619180 322940256 no 66.9428993450105 TraesCS5A01G368800 chr5A_569225865 chr5A 569225865 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569222678 569225620 2943 3 0.101936799184506 RFvsST 286678925 609619180 322940256 no 56.4213867586402 TraesCS5A01G368800 chr5A_569224565 chr5A 569224565 G A G A 3 missense_variant MODERATE transcript unique_Triplet 569222678 569225620 2943 3 0.101936799184506 RFvsST 286678925 609619180 322940256 no 56.4213867586402 TraesCS5A01G368800 chr5A_569223631 chr5A 569223631 G C G C 3 missense_variant MODERATE transcript unique_Triplet 569222678 569225620 2943 3 0.101936799184506 RFvsST 286678925 609619180 322940256 no 56.4213867586402 TraesCS5A01G369000 chr5A_569288674 chr5A 569288674 A C A C 3 missense_variant MODERATE transcript unique_Triplet 569285572 569289333 3762 2 0.0531632110579479 RFvsST 286678925 609619180 322940256 no 92.3847290158035 TraesCS5A01G369000 chr5A_569285729 chr5A 569285729 A G A G 3 missense_variant MODERATE transcript unique_Triplet 569285572 569289333 3762 2 0.0531632110579479 RFvsST 286678925 609619180 322940256 no 92.3847290158035 TraesCS5A01G369100 chr5A_569448945 chr5A 569448945 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569452203 569456729 4527 1 0.0220896841175171 RFvsST 286678925 609619180 322940256 no 5.29193597905034 TraesCS5A01G369400 chr5A_569549789 chr5A 569549789 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569543651 569544904 1254 3 0.239234449760766 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G369400 chr5A_569546422 chr5A 569546422 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569543651 569544904 1254 3 0.239234449760766 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G369400 chr5A_569546416 chr5A 569546416 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569543651 569544904 1254 3 0.239234449760766 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G369500 chr5A_569547062 chr5A 569547062 A G A G 3 synonymous_variant LOW transcript unique_Triplet 569546425 569550473 4049 2 0.0493949123240306 RFvsST 286678925 609619180 322940256 no 85.5896981340808 TraesCS5A01G369500 chr5A_569546545 chr5A 569546545 A G A G 3 synonymous_variant LOW transcript unique_Triplet 569546425 569550473 4049 2 0.0493949123240306 RFvsST 286678925 609619180 322940256 no 85.5896981340808 TraesCS5A01G369600 chr5A_569650371 chr5A 569650371 G A G A 3 missense_variant MODERATE transcript non_Triplet 569650209 569651951 1743 3 0.172117039586919 RFvsST 286678925 609619180 322940256 no 143.251034966452 TraesCS5A01G369600 chr5A_569651321 chr5A 569651321 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 569650209 569651951 1743 3 0.172117039586919 RFvsST 286678925 609619180 322940256 no 143.251034966452 TraesCS5A01G369600 chr5A_569650546 chr5A 569650546 G G A A 4 stop_gained HIGH transcript non_Triplet 569650209 569651951 1743 3 0.172117039586919 RFvsST 286678925 609619180 322940256 no 143.251034966452 TraesCS5A01G370000 chr5A_569698773 chr5A 569698773 C T C T 3 synonymous_variant LOW transcript unique_Triplet 569698717 569701549 2833 2 0.0705965407695023 RFvsST 286678925 609619180 322940256 no 1139.65872638059 TraesCS5A01G370000 chr5A_569698941 chr5A 569698941 G A G A 3 synonymous_variant LOW transcript unique_Triplet 569698717 569701549 2833 2 0.0705965407695023 RFvsST 286678925 609619180 322940256 no 1139.65872638059 TraesCS5A01G370100 chr5A_569699755 chr5A 569699755 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569703103 569719656 16554 5 0.0302041802585478 RFvsST 286678925 609619180 322940256 no 97.8415348928468 TraesCS5A01G370100 chr5A_569718522 chr5A 569718522 G A G A 3 synonymous_variant LOW transcript unique_Triplet 569703103 569719656 16554 5 0.0302041802585478 RFvsST 286678925 609619180 322940256 no 97.8415348928468 TraesCS5A01G370100 chr5A_569719359 chr5A 569719359 A G A G 3 synonymous_variant LOW transcript unique_Triplet 569703103 569719656 16554 5 0.0302041802585478 RFvsST 286678925 609619180 322940256 no 97.8415348928468 TraesCS5A01G370100 chr5A_569699735 chr5A 569699735 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569703103 569719656 16554 5 0.0302041802585478 RFvsST 286678925 609619180 322940256 no 97.8415348928468 TraesCS5A01G370100 chr5A_569713143 chr5A 569713143 C T C T 3 missense_variant MODERATE transcript unique_Triplet 569703103 569719656 16554 5 0.0302041802585478 RFvsST 286678925 609619180 322940256 no 97.8415348928468 TraesCS5A01G370500 chr5A_569865054 chr5A 569865054 G G A A 4 synonymous_variant LOW transcript unique_Triplet 569863834 569868830 4997 2 0.0400240144086452 RFvsST 286678925 609619180 322940256 no 23.4581712105009 TraesCS5A01G370500 chr5A_569868859 chr5A 569868859 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 569863834 569868830 4997 2 0.0400240144086452 RFvsST 286678925 609619180 322940256 no 23.4581712105009 TraesCS5A01G370600 chr5A_569876487 chr5A 569876487 A G A G 3 missense_variant MODERATE transcript unique_Triplet 569874515 569876586 2072 3 0.144787644787645 RFvsST 286678925 609619180 322940256 no 43.9472402769959 TraesCS5A01G370600 chr5A_569874710 chr5A 569874710 A G A G 3 synonymous_variant LOW transcript unique_Triplet 569874515 569876586 2072 3 0.144787644787645 RFvsST 286678925 609619180 322940256 no 43.9472402769959 TraesCS5A01G370600 chr5A_569876604 chr5A 569876604 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569874515 569876586 2072 3 0.144787644787645 RFvsST 286678925 609619180 322940256 no 43.9472402769959 TraesCS5A01G370700 chr5A_569992073 chr5A 569992073 G A G A 3 synonymous_variant LOW transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569989089 chr5A 569989089 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569991966 chr5A 569991966 A G A G 3 missense_variant MODERATE transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569993135 chr5A 569993135 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569992150 chr5A 569992150 C T C T 3 missense_variant MODERATE transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569989132 chr5A 569989132 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569992137 chr5A 569992137 C T C T 3 missense_variant MODERATE transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569993101 chr5A 569993101 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G370700 chr5A_569993112 chr5A 569993112 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 569989404 569992702 3299 9 0.27280994240679 RFvsST 286678925 609619180 322940256 no 245.44033943213 TraesCS5A01G371100 chr5A_570184808 chr5A 570184808 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 570184882 570186539 1658 4 0.241254523522316 RFvsST 286678925 609619180 322940256 no 32.0850603650496 TraesCS5A01G371100 chr5A_570184762 chr5A 570184762 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 570184882 570186539 1658 4 0.241254523522316 RFvsST 286678925 609619180 322940256 no 32.0850603650496 TraesCS5A01G371100 chr5A_570186180 chr5A 570186180 C C T T 4 missense_variant MODERATE transcript non_Triplet 570184882 570186539 1658 4 0.241254523522316 RFvsST 286678925 609619180 322940256 no 32.0850603650496 TraesCS5A01G371100 chr5A_570184747 chr5A 570184747 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 570184882 570186539 1658 4 0.241254523522316 RFvsST 286678925 609619180 322940256 no 32.0850603650496 TraesCS5A01G371200 chr5A_570188613 chr5A 570188613 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570188422 chr5A 570188422 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570187942 chr5A 570187942 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570188412 chr5A 570188412 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570186552 chr5A 570186552 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570187072 chr5A 570187072 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570186551 chr5A 570186551 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570186640 chr5A 570186640 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371200 chr5A_570186745 chr5A 570186745 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 570190643 570193640 2998 9 0.300200133422282 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G371800 chr5A_570499860 chr5A 570499860 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570499924 570503318 3395 4 0.117820324005891 RFvsST 286678925 609619180 322940256 no 294.267261215261 TraesCS5A01G371800 chr5A_570502397 chr5A 570502397 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 570499924 570503318 3395 4 0.117820324005891 RFvsST 286678925 609619180 322940256 no 294.267261215261 TraesCS5A01G371800 chr5A_570502957 chr5A 570502957 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 570499924 570503318 3395 4 0.117820324005891 RFvsST 286678925 609619180 322940256 no 294.267261215261 TraesCS5A01G371800 chr5A_570502806 chr5A 570502806 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 570499924 570503318 3395 4 0.117820324005891 RFvsST 286678925 609619180 322940256 no 294.267261215261 TraesCS5A01G372100 chr5A_570713177 chr5A 570713177 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 570713133 570718001 4869 3 0.0616142945163278 RFvsST 286678925 609619180 322940256 no 728.786632073633 TraesCS5A01G372100 chr5A_570717087 chr5A 570717087 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 570713133 570718001 4869 3 0.0616142945163278 RFvsST 286678925 609619180 322940256 no 728.786632073633 TraesCS5A01G372100 chr5A_570713088 chr5A 570713088 G T G T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570713133 570718001 4869 3 0.0616142945163278 RFvsST 286678925 609619180 322940256 no 728.786632073633 TraesCS5A01G372300 chr5A_570774624 chr5A 570774624 C C T T 4 missense_variant MODERATE transcript unique_Triplet 570774380 570776774 2395 1 0.0417536534446764 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G372400 chr5A_570776784 chr5A 570776784 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 570778187 570779638 1452 1 0.068870523415978 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G372900 chr5A_570941378 chr5A 570941378 T A T A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570937891 570941358 3468 1 0.0288350634371396 RFvsST 286678925 609619180 322940256 no 733.600092902069 TraesCS5A01G373000 chr5A_571155241 chr5A 571155241 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 571149603 571155587 5985 3 0.050125313283208 RFvsST 286678925 609619180 322940256 no 94.5242460737967 TraesCS5A01G373000 chr5A_571155311 chr5A 571155311 T A T A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 571149603 571155587 5985 3 0.050125313283208 RFvsST 286678925 609619180 322940256 no 94.5242460737967 TraesCS5A01G373000 chr5A_571155101 chr5A 571155101 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 571149603 571155587 5985 3 0.050125313283208 RFvsST 286678925 609619180 322940256 no 94.5242460737967 TraesCS5A01G373500 chr5A_571466742 chr5A 571466742 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 571465039 571467853 2815 2 0.0710479573712256 RFvsST 286678925 609619180 322940256 no 41.0147598446114 TraesCS5A01G373500 chr5A_571467281 chr5A 571467281 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 571465039 571467853 2815 2 0.0710479573712256 RFvsST 286678925 609619180 322940256 no 41.0147598446114 TraesCS5A01G373700 chr5A_571683569 chr5A 571683569 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571684846 571685457 612 1 0.163398692810458 RFvsST 286678925 609619180 322940256 no 15.077438787058 TraesCS5A01G373900 chr5A_571789629 chr5A 571789629 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571780280 571789210 8931 2 0.022393908856791 RFvsST 286678925 609619180 322940256 no 92.45144549086 TraesCS5A01G373900 chr5A_571780534 chr5A 571780534 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 571780280 571789210 8931 2 0.022393908856791 RFvsST 286678925 609619180 322940256 no 92.45144549086 TraesCS5A01G374300 chr5A_572819950 chr5A 572819950 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 572812705 572820300 7596 3 0.0394944707740916 RFvsST 286678925 609619180 322940256 no 251.631368797576 TraesCS5A01G374300 chr5A_572812664 chr5A 572812664 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 572812705 572820300 7596 3 0.0394944707740916 RFvsST 286678925 609619180 322940256 no 251.631368797576 TraesCS5A01G374300 chr5A_572814943 chr5A 572814943 T C T C 3 synonymous_variant LOW transcript unique_Triplet 572812705 572820300 7596 3 0.0394944707740916 RFvsST 286678925 609619180 322940256 no 251.631368797576 TraesCS5A01G374400 chr5A_572830393 chr5A 572830393 A G A G 3 missense_variant MODERATE transcript unique_Triplet 572824507 572832804 8298 3 0.0361532899493854 RFvsST 286678925 609619180 322940256 no 199.525969770424 TraesCS5A01G374400 chr5A_572830264 chr5A 572830264 A C A C 3 missense_variant MODERATE transcript unique_Triplet 572824507 572832804 8298 3 0.0361532899493854 RFvsST 286678925 609619180 322940256 no 199.525969770424 TraesCS5A01G374400 chr5A_572820539 chr5A 572820539 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 572824507 572832804 8298 3 0.0361532899493854 RFvsST 286678925 609619180 322940256 no 199.525969770424 TraesCS5A01G375300 chr5A_573101126 chr5A 573101126 A G A G 3 synonymous_variant LOW transcript unique_Triplet 573100442 573102443 2002 2 0.0999000999000999 RFvsST 286678925 609619180 322940256 no 76.1226971491856 TraesCS5A01G375300 chr5A_573098983 chr5A 573098983 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 573100442 573102443 2002 2 0.0999000999000999 RFvsST 286678925 609619180 322940256 no 76.1226971491856 TraesCS5A01G375500 chr5A_573588670 chr5A 573588670 G A G A 3 splice_donor_variant&intron_variant HIGH transcript unique_Triplet 573587265 573591227 3963 3 0.0757002271006813 RFvsST 286678925 609619180 322940256 no 375.121060514422 TraesCS5A01G375500 chr5A_573589851 chr5A 573589851 A G A G 3 missense_variant MODERATE transcript unique_Triplet 573587265 573591227 3963 3 0.0757002271006813 RFvsST 286678925 609619180 322940256 no 375.121060514422 TraesCS5A01G375500 chr5A_573587113 chr5A 573587113 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 573587265 573591227 3963 3 0.0757002271006813 RFvsST 286678925 609619180 322940256 no 375.121060514422 TraesCS5A01G377100 chr5A_574750020 chr5A 574750020 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 574742969 574751917 8949 1 0.0111744328975305 RFvsST 286678925 609619180 322940256 no 448.49938895455 TraesCS5A01G378400 chr5A_575665121 chr5A 575665121 A A G G 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 575660766 575667556 6791 1 0.0147253718156383 RFvsST 286678925 609619180 322940256 no 19.0483437075983 TraesCS5A01G380600 chr5A_577956962 chr5A 577956962 A A G G 4 synonymous_variant LOW transcript unique_Triplet 577950969 577963021 12053 1 0.00829668962084128 RFvsST 286678925 609619180 322940256 no 53.5684344759183 TraesCS5A01G381000 chr5A_578447886 chr5A 578447886 C C T T 4 missense_variant MODERATE transcript unique_Triplet 578447360 578449273 1914 5 0.26123301985371 RFvsST 286678925 609619180 322940256 no 85.821009477348 TraesCS5A01G381000 chr5A_578447723 chr5A 578447723 C C T T 4 missense_variant MODERATE transcript unique_Triplet 578447360 578449273 1914 5 0.26123301985371 RFvsST 286678925 609619180 322940256 no 85.821009477348 TraesCS5A01G381000 chr5A_578447368 chr5A 578447368 C C T T 4 synonymous_variant LOW transcript unique_Triplet 578447360 578449273 1914 5 0.26123301985371 RFvsST 286678925 609619180 322940256 no 85.821009477348 TraesCS5A01G381000 chr5A_578448167 chr5A 578448167 A A G G 4 missense_variant MODERATE transcript unique_Triplet 578447360 578449273 1914 5 0.26123301985371 RFvsST 286678925 609619180 322940256 no 85.821009477348 TraesCS5A01G381000 chr5A_578446563 chr5A 578446563 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 578447360 578449273 1914 5 0.26123301985371 RFvsST 286678925 609619180 322940256 no 85.821009477348 TraesCS5A01G381200 chr5A_578956465 chr5A 578956465 G G T T 4 synonymous_variant LOW transcript non_Triplet 578955806 578956597 792 1 0.126262626262626 RFvsST 286678925 609619180 322940256 no 195.324685860304 TraesCS5A01G382400 chr5A_580283282 chr5A 580283282 A T A T 3 missense_variant MODERATE transcript unique_Triplet 580282111 580287974 5864 1 0.0170532060027285 RFvsST 286678925 609619180 322940256 no 105.593476528173 TraesCS5A01G382700 chr5A_580802809 chr5A 580802809 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 580794359 580798445 4087 1 0.0244678248103744 RFvsST 286678925 609619180 322940256 no 908.112589921798 TraesCS5A01G382800 chr5A_580801555 chr5A 580801555 C G C G 3 missense_variant MODERATE transcript unique_Triplet 580799964 580801653 1690 2 0.118343195266272 RFvsST 286678925 609619180 322940256 no 11.5894297686116 TraesCS5A01G382800 chr5A_580799894 chr5A 580799894 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 580799964 580801653 1690 2 0.118343195266272 RFvsST 286678925 609619180 322940256 no 11.5894297686116 TraesCS5A01G383000 chr5A_580935831 chr5A 580935831 G A G A 3 synonymous_variant LOW transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580940307 chr5A 580940307 G A G A 3 synonymous_variant LOW transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580939572 chr5A 580939572 G A G A 3 synonymous_variant LOW transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580939178 chr5A 580939178 A C A C 3 missense_variant MODERATE transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580935521 chr5A 580935521 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580936023 chr5A 580936023 T A T A 3 missense_variant MODERATE transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383000 chr5A_580937600 chr5A 580937600 C A C A 3 synonymous_variant LOW transcript unique_Triplet 580935828 580943823 7996 7 0.087543771885943 RFvsST 286678925 609619180 322940256 no 191.382020645906 TraesCS5A01G383700 chr5A_581302317 chr5A 581302317 T C T C 3 missense_variant MODERATE transcript unique_Triplet 581302072 581305855 3784 1 0.0264270613107822 RFvsST 286678925 609619180 322940256 no 95.8956793776203 TraesCS5A01G383800 chr5A_581488651 chr5A 581488651 C A C A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 581487008 581488298 1291 1 0.0774593338497289 RFvsST 286678925 609619180 322940256 no 84.0074218453235 TraesCS5A01G384200 chr5A_582104154 chr5A 582104154 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 582100027 582104146 4120 4 0.0970873786407767 RFvsST 286678925 609619180 322940256 no 314.4062737537 TraesCS5A01G384200 chr5A_582104163 chr5A 582104163 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 582100027 582104146 4120 4 0.0970873786407767 RFvsST 286678925 609619180 322940256 no 314.4062737537 TraesCS5A01G384200 chr5A_582103426 chr5A 582103426 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 582100027 582104146 4120 4 0.0970873786407767 RFvsST 286678925 609619180 322940256 no 314.4062737537 TraesCS5A01G384200 chr5A_582104005 chr5A 582104005 T C T C 3 synonymous_variant LOW transcript unique_Triplet 582100027 582104146 4120 4 0.0970873786407767 RFvsST 286678925 609619180 322940256 no 314.4062737537 TraesCS5A01G384300 chr5A_582107688 chr5A 582107688 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 582107204 582107662 459 2 0.435729847494553 RFvsST 286678925 609619180 322940256 no 413.296454917537 TraesCS5A01G384300 chr5A_582107423 chr5A 582107423 A G A G 3 synonymous_variant LOW transcript unique_Triplet 582107204 582107662 459 2 0.435729847494553 RFvsST 286678925 609619180 322940256 no 413.296454917537 TraesCS5A01G384400 chr5A_582384471 chr5A 582384471 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 582381772 582383638 1867 1 0.0535618639528656 RFvsST 286678925 609619180 322940256 no No_match TraesCS5A01G384500 chr5A_582386673 chr5A 582386673 C T C T 3 synonymous_variant LOW transcript unique_Triplet 582384638 582394877 10240 1 0.009765625 RFvsST 286678925 609619180 322940256 no 2.12922191911412 TraesCS5A01G384600 chr5A_582400675 chr5A 582400675 A C A C 3 synonymous_variant LOW transcript unique_Triplet 582400175 582401356 1182 2 0.169204737732657 RFvsST 286678925 609619180 322940256 no 680.95562306725 TraesCS5A01G384600 chr5A_582401292 chr5A 582401292 T C T C 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 582400175 582401356 1182 2 0.169204737732657 RFvsST 286678925 609619180 322940256 no 680.95562306725 TraesCS5A01G384700 chr5A_582607911 chr5A 582607911 A G A G 3 missense_variant MODERATE transcript non_Triplet 582607895 582608569 675 1 0.148148148148148 RFvsST 286678925 609619180 322940256 no 34.1139498786966 TraesCS5A01G385300 chr5A_582964896 chr5A 582964896 T A T A 3 missense_variant MODERATE transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582966517 chr5A 582966517 C T C T 3 synonymous_variant LOW transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582966892 chr5A 582966892 A C A C 3 synonymous_variant LOW transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582962849 chr5A 582962849 T C T C 3 missense_variant MODERATE transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582961622 chr5A 582961622 C A C A 3 missense_variant MODERATE transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582962548 chr5A 582962548 A G A G 3 synonymous_variant LOW transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582961902 chr5A 582961902 T C T C 3 missense_variant MODERATE transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582966601 chr5A 582966601 T C T C 3 synonymous_variant LOW transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385300 chr5A_582966976 chr5A 582966976 A G A G 3 synonymous_variant LOW transcript unique_Triplet 582960875 582967141 6267 9 0.143609382479655 RFvsST 286678925 609619180 322940256 no 118.958567776287 TraesCS5A01G385500 chr5A_583560623 chr5A 583560623 C T C T 3 missense_variant MODERATE transcript unique_Triplet 583558170 583561853 3684 3 0.0814332247557003 RFvsST 286678925 609619180 322940256 no 14.0857598963346 TraesCS5A01G385500 chr5A_583561386 chr5A 583561386 A G A G 3 missense_variant MODERATE transcript unique_Triplet 583558170 583561853 3684 3 0.0814332247557003 RFvsST 286678925 609619180 322940256 no 14.0857598963346 TraesCS5A01G385500 chr5A_583560607 chr5A 583560607 A T A T 3 missense_variant MODERATE transcript unique_Triplet 583558170 583561853 3684 3 0.0814332247557003 RFvsST 286678925 609619180 322940256 no 14.0857598963346 TraesCS5A01G386300 chr5A_584040193 chr5A 584040193 A G A G 3 missense_variant MODERATE transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584038572 chr5A 584038572 C T C T 3 synonymous_variant LOW transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584037194 chr5A 584037194 C T C T 3 missense_variant MODERATE transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584037446 chr5A 584037446 G A G A 3 missense_variant MODERATE transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584044012 chr5A 584044012 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584036133 chr5A 584036133 G A G A 3 synonymous_variant LOW transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386300 chr5A_584037299 chr5A 584037299 A G A G 3 missense_variant MODERATE transcript unique_Triplet 584035444 584043832 8389 7 0.0834426034092264 RFvsST 286678925 609619180 322940256 no 359.358336410787 TraesCS5A01G386400 chr5A_584045356 chr5A 584045356 T C T C 3 synonymous_variant LOW transcript unique_Triplet 584044953 584045860 908 1 0.110132158590308 RFvsST 286678925 609619180 322940256 no 116.053815276798 TraesCS5A01G386500 chr5A_584055533 chr5A 584055533 G C G C 3 missense_variant MODERATE transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386500 chr5A_584045730 chr5A 584045730 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386500 chr5A_584056533 chr5A 584056533 T C T C 3 synonymous_variant LOW transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386500 chr5A_584053337 chr5A 584053337 G A G A 3 synonymous_variant LOW transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386500 chr5A_584053995 chr5A 584053995 C T C T 3 synonymous_variant LOW transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386500 chr5A_584057175 chr5A 584057175 A C A C 3 missense_variant MODERATE transcript unique_Triplet 584049719 584058870 9152 6 0.0655594405594406 RFvsST 286678925 609619180 322940256 no 44.9231665219496 TraesCS5A01G386800 chr5A_584450324 chr5A 584450324 C G C G 3 missense_variant MODERATE transcript unique_Triplet 584449643 584454446 4804 1 0.0208159866777685 RFvsST 286678925 609619180 322940256 no 74.1055450147762 TraesCS5A01G386900 chr5A_584455773 chr5A 584455773 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 584454702 584456012 1311 2 0.15255530129672 RFvsST 286678925 609619180 322940256 no 439.256695530258 TraesCS5A01G386900 chr5A_584455960 chr5A 584455960 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 584454702 584456012 1311 2 0.15255530129672 RFvsST 286678925 609619180 322940256 no 439.256695530258 TraesCS5A01G485700 chr5A_657057643 chr5A 657057643 G A G A 3 synonymous_variant LOW transcript unique_Triplet 657039659 657061915 22257 4 0.0179718740171631 RFvsST 623492647 708805841 85313195 no 30.115432118775 TraesCS5A01G485700 chr5A_657061990 chr5A 657061990 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 657039659 657061915 22257 4 0.0179718740171631 RFvsST 623492647 708805841 85313195 no 30.115432118775 TraesCS5A01G485700 chr5A_657054754 chr5A 657054754 G A G A 3 missense_variant MODERATE transcript unique_Triplet 657039659 657061915 22257 4 0.0179718740171631 RFvsST 623492647 708805841 85313195 no 30.115432118775 TraesCS5A01G485700 chr5A_657039650 chr5A 657039650 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 657039659 657061915 22257 4 0.0179718740171631 RFvsST 623492647 708805841 85313195 no 30.115432118775 TraesCS5A01G486300 chr5A_657202023 chr5A 657202023 A G A G 3 synonymous_variant LOW transcript unique_Triplet 657201072 657205353 4282 1 0.0233535730966838 RFvsST 623492647 708805841 85313195 no 156.917569268048 TraesCS5A01G486600 chr5A_657381432 chr5A 657381432 T G T G 3 missense_variant MODERATE transcript unique_Triplet 657378660 657381734 3075 1 0.032520325203252 RFvsST 623492647 708805841 85313195 no 5.9440101865309 TraesCS5A01G487700 chr5A_657761245 chr5A 657761245 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 657756999 657757659 661 1 0.151285930408472 RFvsST 623492647 708805841 85313195 no 8.54095846183404 TraesCS5A01G489800 chr5A_659457572 chr5A 659457572 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 659456808 659459568 2761 1 0.0362187613183629 RFvsST 623492647 708805841 85313195 no 805.6484005988 TraesCS5A01G496200 chr5A_663721988 chr5A 663721988 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 663726423 663726758 336 2 0.595238095238095 RFvsST 623492647 708805841 85313195 no 190.209937154834 TraesCS5A01G496200 chr5A_663721992 chr5A 663721992 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 663726423 663726758 336 2 0.595238095238095 RFvsST 623492647 708805841 85313195 no 190.209937154834 TraesCS5A01G496400 chr5A_663843083 chr5A 663843083 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 663841608 663843359 1752 1 0.0570776255707763 RFvsST 623492647 708805841 85313195 no 88.3378350539112 TraesCS5A01G496900 chr5A_664274939 chr5A 664274939 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 664272333 664275025 2693 3 0.111399925733383 RFvsST 623492647 708805841 85313195 no 139.126121436397 TraesCS5A01G496900 chr5A_664274854 chr5A 664274854 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 664272333 664275025 2693 3 0.111399925733383 RFvsST 623492647 708805841 85313195 no 139.126121436397 TraesCS5A01G496900 chr5A_664274385 chr5A 664274385 C T C T 3 synonymous_variant LOW transcript unique_Triplet 664272333 664275025 2693 3 0.111399925733383 RFvsST 623492647 708805841 85313195 no 139.126121436397 TraesCS5A01G497000 chr5A_664483640 chr5A 664483640 C T C T 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664489461 chr5A 664489461 A G A G 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664484721 chr5A 664484721 A C A C 3 synonymous_variant LOW transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664488670 chr5A 664488670 T G T G 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664488435 chr5A 664488435 A T A T 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664489466 chr5A 664489466 C T C T 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664483630 chr5A 664483630 T C T C 3 missense_variant MODERATE transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497000 chr5A_664484101 chr5A 664484101 G A G A 3 synonymous_variant LOW transcript unique_Triplet 664483509 664489935 6427 8 0.124474871635289 RFvsST 623492647 708805841 85313195 no 408.960645529358 TraesCS5A01G497600 chr5A_664796159 chr5A 664796159 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 664795571 664800589 5019 2 0.039848575413429 RFvsST 623492647 708805841 85313195 no 49.6956971305442 TraesCS5A01G497600 chr5A_664796160 chr5A 664796160 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 664795571 664800589 5019 2 0.039848575413429 RFvsST 623492647 708805841 85313195 no 49.6956971305442 TraesCS5A01G497700 chr5A_664808642 chr5A 664808642 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 664807402 664808212 811 1 0.123304562268804 RFvsST 623492647 708805841 85313195 no No_match TraesCS5A01G497800 chr5A_664809938 chr5A 664809938 G C G C 3 missense_variant MODERATE transcript unique_Triplet 664809410 664812925 3516 2 0.0568828213879408 RFvsST 623492647 708805841 85313195 no 278.660391459601 TraesCS5A01G497800 chr5A_664812752 chr5A 664812752 A G A G 3 synonymous_variant LOW transcript unique_Triplet 664809410 664812925 3516 2 0.0568828213879408 RFvsST 623492647 708805841 85313195 no 278.660391459601 TraesCS5A01G498100 chr5A_665473759 chr5A 665473759 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 665471339 665478568 7230 1 0.0138312586445367 RFvsST 623492647 708805841 85313195 no 409.393431272641 TraesCS5A01G498500 chr5A_665612792 chr5A 665612792 T C T C 3 missense_variant MODERATE transcript unique_Triplet 665612043 665614418 2376 1 0.0420875420875421 RFvsST 623492647 708805841 85313195 no 139.726257363936 TraesCS5A01G498700 chr5A_665767583 chr5A 665767583 G A G A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 665766260 665767599 1340 4 0.298507462686567 RFvsST 623492647 708805841 85313195 no 606.272297627516 TraesCS5A01G498700 chr5A_665767259 chr5A 665767259 T C T C 3 synonymous_variant LOW transcript unique_Triplet 665766260 665767599 1340 4 0.298507462686567 RFvsST 623492647 708805841 85313195 no 606.272297627516 TraesCS5A01G498700 chr5A_665766848 chr5A 665766848 G C G C 3 synonymous_variant LOW transcript unique_Triplet 665766260 665767599 1340 4 0.298507462686567 RFvsST 623492647 708805841 85313195 no 606.272297627516 TraesCS5A01G498700 chr5A_665766348 chr5A 665766348 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 665766260 665767599 1340 4 0.298507462686567 RFvsST 623492647 708805841 85313195 no 606.272297627516 TraesCS5A01G498900 chr5A_665817769 chr5A 665817769 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 665816174 665817624 1451 1 0.0689179875947622 RFvsST 623492647 708805841 85313195 no 20.9298393797588 TraesCS5A01G499300 chr5A_666040115 chr5A 666040115 A T A T 3 missense_variant MODERATE transcript non_Triplet 666038985 666040123 1139 4 0.351185250219491 RFvsST 623492647 708805841 85313195 no 56.7666894777147 TraesCS5A01G499300 chr5A_666040125 chr5A 666040125 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 666038985 666040123 1139 4 0.351185250219491 RFvsST 623492647 708805841 85313195 no 56.7666894777147 TraesCS5A01G499300 chr5A_666039909 chr5A 666039909 A G A G 3 missense_variant MODERATE transcript non_Triplet 666038985 666040123 1139 4 0.351185250219491 RFvsST 623492647 708805841 85313195 no 56.7666894777147 TraesCS5A01G499300 chr5A_666040218 chr5A 666040218 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 666038985 666040123 1139 4 0.351185250219491 RFvsST 623492647 708805841 85313195 no 56.7666894777147 TraesCS5A01G499900 chr5A_666230627 chr5A 666230627 T C T C 3 synonymous_variant LOW transcript unique_Triplet 666228593 666234897 6305 3 0.0475812846946868 RFvsST 623492647 708805841 85313195 no 303.690467011034 TraesCS5A01G499900 chr5A_666232992 chr5A 666232992 G C G C 3 missense_variant MODERATE transcript unique_Triplet 666228593 666234897 6305 3 0.0475812846946868 RFvsST 623492647 708805841 85313195 no 303.690467011034 TraesCS5A01G499900 chr5A_666228776 chr5A 666228776 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 666228593 666234897 6305 3 0.0475812846946868 RFvsST 623492647 708805841 85313195 no 303.690467011034 TraesCS5A01G500700 chr5A_666682681 chr5A 666682681 G C G C 3 missense_variant MODERATE transcript non_Triplet 666682521 666683703 1183 4 0.338123415046492 RFvsST 623492647 708805841 85313195 no 52.4497934142309 TraesCS5A01G500700 chr5A_666681863 chr5A 666681863 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 666682521 666683703 1183 4 0.338123415046492 RFvsST 623492647 708805841 85313195 no 52.4497934142309 TraesCS5A01G500700 chr5A_666681967 chr5A 666681967 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 666682521 666683703 1183 4 0.338123415046492 RFvsST 623492647 708805841 85313195 no 52.4497934142309 TraesCS5A01G500700 chr5A_666681182 chr5A 666681182 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 666682521 666683703 1183 4 0.338123415046492 RFvsST 623492647 708805841 85313195 no 52.4497934142309 TraesCS5A01G501000 chr5A_666743450 chr5A 666743450 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 666734108 666738630 4523 3 0.0663276586336502 RFvsST 623492647 708805841 85313195 no 9.25872622321223 TraesCS5A01G501000 chr5A_666734377 chr5A 666734377 G A G A 3 missense_variant MODERATE transcript unique_Triplet 666734108 666738630 4523 3 0.0663276586336502 RFvsST 623492647 708805841 85313195 no 9.25872622321223 TraesCS5A01G501000 chr5A_666734342 chr5A 666734342 C T C T 3 missense_variant MODERATE transcript unique_Triplet 666734108 666738630 4523 3 0.0663276586336502 RFvsST 623492647 708805841 85313195 no 9.25872622321223 TraesCS5A01G501100 chr5A_666743214 chr5A 666743214 C C T T 4 missense_variant MODERATE transcript non_Triplet 666740738 666743447 2710 1 0.03690036900369 RFvsST 623492647 708805841 85313195 no 84.312053679972 TraesCS5A01G505300 chr5A_670623490 chr5A 670623490 G G A A 4 synonymous_variant LOW transcript unique_Triplet 670622437 670625391 2955 1 0.0338409475465313 RFvsST 623492647 708805841 85313195 no 243.622952761714 TraesCS5A01G506600 chr5A_671442877 chr5A 671442877 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 671443437 671446774 3338 3 0.0898741761533853 RFvsST 623492647 708805841 85313195 no 326.351019136279 TraesCS5A01G506600 chr5A_671443576 chr5A 671443576 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 671443437 671446774 3338 3 0.0898741761533853 RFvsST 623492647 708805841 85313195 no 326.351019136279 TraesCS5A01G506600 chr5A_671444797 chr5A 671444797 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 671443437 671446774 3338 3 0.0898741761533853 RFvsST 623492647 708805841 85313195 no 326.351019136279 TraesCS5A01G506800 chr5A_671542966 chr5A 671542966 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 671540474 671541169 696 1 0.14367816091954 RFvsST 623492647 708805841 85313195 no No_match TraesCS5A01G506900 chr5A_671547783 chr5A 671547783 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 671551275 671552557 1283 1 0.0779423226812159 RFvsST 623492647 708805841 85313195 no 27.7836684800641 TraesCS5A01G508000 chr5A_672339561 chr5A 672339561 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 672339099 672343584 4486 4 0.0891662951404369 RFvsST 623492647 708805841 85313195 no 122.660630212798 TraesCS5A01G508000 chr5A_672343245 chr5A 672343245 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 672339099 672343584 4486 4 0.0891662951404369 RFvsST 623492647 708805841 85313195 no 122.660630212798 TraesCS5A01G508000 chr5A_672339552 chr5A 672339552 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 672339099 672343584 4486 4 0.0891662951404369 RFvsST 623492647 708805841 85313195 no 122.660630212798 TraesCS5A01G508000 chr5A_672343218 chr5A 672343218 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 672339099 672343584 4486 4 0.0891662951404369 RFvsST 623492647 708805841 85313195 no 122.660630212798 TraesCS5A01G508500 chr5A_672837114 chr5A 672837114 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 672836003 672841601 5599 3 0.0535809966065369 RFvsST 623492647 708805841 85313195 no 223.735184155137 TraesCS5A01G508500 chr5A_672841088 chr5A 672841088 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 672836003 672841601 5599 3 0.0535809966065369 RFvsST 623492647 708805841 85313195 no 223.735184155137 TraesCS5A01G508500 chr5A_672836816 chr5A 672836816 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 672836003 672841601 5599 3 0.0535809966065369 RFvsST 623492647 708805841 85313195 no 223.735184155137 TraesCS5A01G509000 chr5A_673301645 chr5A 673301645 G G A A 4 missense_variant MODERATE transcript unique_Triplet 673300855 673301805 951 1 0.10515247108307 RFvsST 623492647 708805841 85313195 no 79.2200080142548 TraesCS5A01G509300 chr5A_673541569 chr5A 673541569 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 673545490 673546931 1442 2 0.13869625520111 RFvsST 623492647 708805841 85313195 no 35.4348215645164 TraesCS5A01G509300 chr5A_673541372 chr5A 673541372 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 673545490 673546931 1442 2 0.13869625520111 RFvsST 623492647 708805841 85313195 no 35.4348215645164 TraesCS5A01G509400 chr5A_673558347 chr5A 673558347 T T C C 4 missense_variant MODERATE transcript non_Triplet 673553338 673559631 6294 2 0.0317762948840165 RFvsST 623492647 708805841 85313195 no 24.5428537256539 TraesCS5A01G509400 chr5A_673559719 chr5A 673559719 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 673553338 673559631 6294 2 0.0317762948840165 RFvsST 623492647 708805841 85313195 no 24.5428537256539 TraesCS5A01G510300 chr5A_673836948 chr5A 673836948 G G C C 4 missense_variant MODERATE transcript non_Triplet 673835897 673839359 3463 1 0.0288766965059197 RFvsST 623492647 708805841 85313195 no 428.442039001598 TraesCS5A01G512400 chr5A_676591013 chr5A 676591013 G G A A 4 missense_variant MODERATE transcript unique_Triplet 676590965 676593408 2444 1 0.0409165302782324 RFvsST 623492647 708805841 85313195 no 317.853603192861 TraesCS5A01G512500 chr5A_676603079 chr5A 676603079 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 676596135 676601961 5827 1 0.0171614896172988 RFvsST 623492647 708805841 85313195 no 216.005502912359 TraesCS5A01G513300 chr5A_677130302 chr5A 677130302 A A G G 4 missense_variant MODERATE transcript unique_Triplet 677130169 677131727 1559 1 0.064143681847338 RFvsST 623492647 708805841 85313195 no 269.482606434095 TraesCS5A01G513500 chr5A_677160779 chr5A 677160779 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 677159594 677160838 1245 1 0.0803212851405622 RFvsST 623492647 708805841 85313195 no 613.578826234889 TraesCS5A01G514000 chr5A_677845610 chr5A 677845610 T C T C 3 missense_variant MODERATE transcript non_Triplet 677845095 677846740 1646 1 0.0607533414337789 RFvsST 623492647 708805841 85313195 no 619.586018551888 TraesCS5A01G514400 chr5A_678082079 chr5A 678082079 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 678082148 678083368 1221 4 0.327600327600328 RFvsST 623492647 708805841 85313195 no 93.2964267740794 TraesCS5A01G514400 chr5A_678082083 chr5A 678082083 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 678082148 678083368 1221 4 0.327600327600328 RFvsST 623492647 708805841 85313195 no 93.2964267740794 TraesCS5A01G514400 chr5A_678082476 chr5A 678082476 T C T C 3 missense_variant MODERATE transcript non_Triplet 678082148 678083368 1221 4 0.327600327600328 RFvsST 623492647 708805841 85313195 no 93.2964267740794 TraesCS5A01G514400 chr5A_678082521 chr5A 678082521 T C T C 3 missense_variant MODERATE transcript non_Triplet 678082148 678083368 1221 4 0.327600327600328 RFvsST 623492647 708805841 85313195 no 93.2964267740794 TraesCS5A01G514500 chr5A_678084482 chr5A 678084482 A G A G 3 synonymous_variant LOW transcript unique_Triplet 678082157 678084778 2622 3 0.11441647597254 RFvsST 623492647 708805841 85313195 no 491.226430939883 TraesCS5A01G514500 chr5A_678084604 chr5A 678084604 C T C T 3 missense_variant MODERATE transcript unique_Triplet 678082157 678084778 2622 3 0.11441647597254 RFvsST 623492647 708805841 85313195 no 491.226430939883 TraesCS5A01G514500 chr5A_678084750 chr5A 678084750 A C A C 3 missense_variant MODERATE transcript unique_Triplet 678082157 678084778 2622 3 0.11441647597254 RFvsST 623492647 708805841 85313195 no 491.226430939883 TraesCS5A01G514700 chr5A_678205857 chr5A 678205857 G A G A 3 missense_variant MODERATE transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678204312 chr5A 678204312 C T C T 3 synonymous_variant LOW transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678202038 chr5A 678202038 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678204416 chr5A 678204416 G A G A 3 missense_variant MODERATE transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678202159 chr5A 678202159 T C T C 3 synonymous_variant LOW transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678202313 chr5A 678202313 C T C T 3 missense_variant MODERATE transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678204113 chr5A 678204113 A G A G 3 missense_variant MODERATE transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678204114 chr5A 678204114 G A G A 3 synonymous_variant LOW transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678205590 chr5A 678205590 G A G A 3 missense_variant MODERATE transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678202055 chr5A 678202055 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678202396 chr5A 678202396 G A G A 3 synonymous_variant LOW transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514700 chr5A_678204138 chr5A 678204138 A G A G 3 synonymous_variant LOW transcript unique_Triplet 678202081 678205900 3820 12 0.31413612565445 RFvsST 623492647 708805841 85313195 no 431.402898541062 TraesCS5A01G514900 chr5A_678267520 chr5A 678267520 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 678264467 678267807 3341 1 0.0299311583358276 RFvsST 623492647 708805841 85313195 no 61.0286315195341 TraesCS5A01G516000 chr5A_679661871 chr5A 679661871 C G C G 3 synonymous_variant LOW transcript unique_Triplet 679655952 679666072 10121 1 0.00988044659618615 RFvsST 623492647 708805841 85313195 no 657.692919034081 TraesCS5A01G517000 chr5A_680210598 chr5A 680210598 T T C C 4 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680209898 chr5A 680209898 G A G A 3 missense_variant MODERATE transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680211507 chr5A 680211507 G C G C 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680212165 chr5A 680212165 G A G A 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680212094 chr5A 680212094 C C T T 4 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680210956 chr5A 680210956 G A G A 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680210624 chr5A 680210624 C A C A 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680210337 chr5A 680210337 A A G G 4 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680212053 chr5A 680212053 C T C T 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680211483 chr5A 680211483 G A G A 3 intron_variant MODIFIER transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517000 chr5A_680209988 chr5A 680209988 T C T C 3 missense_variant MODERATE transcript non_Triplet 680208687 680213132 4446 11 0.247413405308142 RFvsST 623492647 708805841 85313195 no 670.658860383215 TraesCS5A01G517100 chr5A_680212269 chr5A 680212269 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 680217223 680217684 462 1 0.216450216450216 RFvsST 623492647 708805841 85313195 no No_match TraesCS5A01G518700 chr5A_680742955 chr5A 680742955 C T C T 3 missense_variant MODERATE transcript non_Triplet 680740663 680744018 3356 1 0.0297973778307509 RFvsST 623492647 708805841 85313195 no 84.8978812161677 TraesCS5A01G521700 chr5A_682932836 chr5A 682932836 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 682927164 682931838 4675 1 0.0213903743315508 RFvsST 623492647 708805841 85313195 no No_match TraesCS5A01G521800 chr5A_682935250 chr5A 682935250 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 682933016 682935183 2168 2 0.0922509225092251 RFvsST 623492647 708805841 85313195 no 450.221955797605 TraesCS5A01G521800 chr5A_682935113 chr5A 682935113 G G A A 4 missense_variant MODERATE transcript unique_Triplet 682933016 682935183 2168 2 0.0922509225092251 RFvsST 623492647 708805841 85313195 no 450.221955797605 TraesCS5A01G524200 chr5A_684939787 chr5A 684939787 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 684938953 684939696 744 1 0.134408602150538 RFvsST 623492647 708805841 85313195 no 1156.94863238174 TraesCS5A01G524300 chr5A_684941763 chr5A 684941763 G G A A 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684942534 chr5A 684942534 A C A C 3 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684941637 chr5A 684941637 C C T T 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684942583 chr5A 684942583 C C T T 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684941852 chr5A 684941852 G G A A 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684943913 chr5A 684943913 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684942630 chr5A 684942630 C C G G 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684941787 chr5A 684941787 A A G G 4 missense_variant MODERATE transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684943695 chr5A 684943695 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524300 chr5A_684941539 chr5A 684941539 G G C C 4 synonymous_variant LOW transcript unique_Triplet 684941347 684943615 2269 10 0.440722785368004 RFvsST 623492647 708805841 85313195 no 328.675291839961 TraesCS5A01G524400 chr5A_685004534 chr5A 685004534 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 685005013 685006299 1287 4 0.310800310800311 RFvsST 623492647 708805841 85313195 no 1130.18372048767 TraesCS5A01G524400 chr5A_685004953 chr5A 685004953 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 685005013 685006299 1287 4 0.310800310800311 RFvsST 623492647 708805841 85313195 no 1130.18372048767 TraesCS5A01G524400 chr5A_685006611 chr5A 685006611 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 685005013 685006299 1287 4 0.310800310800311 RFvsST 623492647 708805841 85313195 no 1130.18372048767 TraesCS5A01G524400 chr5A_685004393 chr5A 685004393 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 685005013 685006299 1287 4 0.310800310800311 RFvsST 623492647 708805841 85313195 no 1130.18372048767 TraesCS5A01G524500 chr5A_685012601 chr5A 685012601 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 685012582 685014279 1698 4 0.235571260306243 RFvsST 623492647 708805841 85313195 no 282.677922451297 TraesCS5A01G524500 chr5A_685012817 chr5A 685012817 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 685012582 685014279 1698 4 0.235571260306243 RFvsST 623492647 708805841 85313195 no 282.677922451297 TraesCS5A01G524500 chr5A_685012749 chr5A 685012749 T A T A 3 missense_variant MODERATE transcript nonUnique_Triplet 685012582 685014279 1698 4 0.235571260306243 RFvsST 623492647 708805841 85313195 no 282.677922451297 TraesCS5A01G524500 chr5A_685014406 chr5A 685014406 T G T G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 685012582 685014279 1698 4 0.235571260306243 RFvsST 623492647 708805841 85313195 no 282.677922451297 TraesCS5A01G524800 chr5A_685536118 chr5A 685536118 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 685534162 685536484 2323 2 0.086095566078347 RFvsST 623492647 708805841 85313195 no 20.7140698299016 TraesCS5A01G524800 chr5A_685535372 chr5A 685535372 A A G G 4 missense_variant MODERATE transcript unique_Triplet 685534162 685536484 2323 2 0.086095566078347 RFvsST 623492647 708805841 85313195 no 20.7140698299016 TraesCS5A01G524900 chr5A_685537800 chr5A 685537800 A A G G 4 synonymous_variant LOW transcript unique_Triplet 685537404 685538684 1281 1 0.078064012490242 RFvsST 623492647 708805841 85313195 no 183.189682015019 TraesCS5A01G525000 chr5A_685543216 chr5A 685543216 A A G G 4 synonymous_variant LOW transcript unique_Triplet 685543123 685547151 4029 3 0.0744601638123604 RFvsST 623492647 708805841 85313195 no 125.902738432943 TraesCS5A01G525000 chr5A_685545224 chr5A 685545224 A G A G 3 missense_variant MODERATE transcript unique_Triplet 685543123 685547151 4029 3 0.0744601638123604 RFvsST 623492647 708805841 85313195 no 125.902738432943 TraesCS5A01G525000 chr5A_685543373 chr5A 685543373 G G T T 4 missense_variant MODERATE transcript unique_Triplet 685543123 685547151 4029 3 0.0744601638123604 RFvsST 623492647 708805841 85313195 no 125.902738432943 TraesCS5A01G525700 chr5A_685963675 chr5A 685963675 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 685960632 685963443 2812 2 0.0711237553342817 RFvsST 623492647 708805841 85313195 no 328.262865962996 TraesCS5A01G525700 chr5A_685963284 chr5A 685963284 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 685960632 685963443 2812 2 0.0711237553342817 RFvsST 623492647 708805841 85313195 no 328.262865962996 TraesCS5A01G528700 chr5A_688703844 chr5A 688703844 C A C A 3 synonymous_variant LOW transcript unique_Triplet 688699051 688703898 4848 1 0.0206270627062706 RFvsST 623492647 708805841 85313195 no 284.321896903734 TraesCS5A01G529000 chr5A_688735963 chr5A 688735963 C T C T 3 missense_variant MODERATE transcript non_Triplet 688734682 688736808 2127 1 0.0470145745181006 RFvsST 623492647 708805841 85313195 no 8.50914108935016 TraesCS5A01G529700 chr5A_688945315 chr5A 688945315 G C G C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 688945872 688952638 6767 2 0.0295551943254027 RFvsST 623492647 708805841 85313195 no 470.755458509255 TraesCS5A01G529700 chr5A_688945547 chr5A 688945547 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 688945872 688952638 6767 2 0.0295551943254027 RFvsST 623492647 708805841 85313195 no 470.755458509255 TraesCS5A01G531300 chr5A_689610740 chr5A 689610740 G A G A 3 missense_variant MODERATE transcript unique_Triplet 689609481 689611910 2430 1 0.0411522633744856 RFvsST 623492647 708805841 85313195 no 87.2030998919415 TraesCS5A01G531900 chr5A_689916469 chr5A 689916469 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 689915391 689915786 396 2 0.505050505050505 RFvsST 623492647 708805841 85313195 no 15.9867047949324 TraesCS5A01G531900 chr5A_689916506 chr5A 689916506 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 689915391 689915786 396 2 0.505050505050505 RFvsST 623492647 708805841 85313195 no 15.9867047949324 TraesCS5A01G532000 chr5A_689916929 chr5A 689916929 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 689916542 689918939 2398 3 0.125104253544621 RFvsST 623492647 708805841 85313195 no 1083.32309188842 TraesCS5A01G532000 chr5A_689916815 chr5A 689916815 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 689916542 689918939 2398 3 0.125104253544621 RFvsST 623492647 708805841 85313195 no 1083.32309188842 TraesCS5A01G532000 chr5A_689916755 chr5A 689916755 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 689916542 689918939 2398 3 0.125104253544621 RFvsST 623492647 708805841 85313195 no 1083.32309188842 TraesCS5A01G532500 chr5A_690191132 chr5A 690191132 A G A G 3 synonymous_variant LOW transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690186194 chr5A 690186194 T G T G 3 missense_variant MODERATE transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690192208 chr5A 690192208 C G C G 3 missense_variant MODERATE transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690190171 chr5A 690190171 C T C T 3 missense_variant MODERATE transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690187326 chr5A 690187326 C T C T 3 synonymous_variant LOW transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690192669 chr5A 690192669 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532500 chr5A_690184607 chr5A 690184607 C T C T 3 missense_variant MODERATE transcript non_Triplet 690182076 690192585 10510 7 0.0666032350142721 RFvsST 623492647 708805841 85313195 no 626.229650057681 TraesCS5A01G532600 chr5A_690304393 chr5A 690304393 C T C T 3 missense_variant MODERATE transcript non_Triplet 690304206 690307956 3751 5 0.133297787256732 RFvsST 623492647 708805841 85313195 no 216.773507635321 TraesCS5A01G532600 chr5A_690308073 chr5A 690308073 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690304206 690307956 3751 5 0.133297787256732 RFvsST 623492647 708805841 85313195 no 216.773507635321 TraesCS5A01G532600 chr5A_690307959 chr5A 690307959 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 690304206 690307956 3751 5 0.133297787256732 RFvsST 623492647 708805841 85313195 no 216.773507635321 TraesCS5A01G532600 chr5A_690308122 chr5A 690308122 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690304206 690307956 3751 5 0.133297787256732 RFvsST 623492647 708805841 85313195 no 216.773507635321 TraesCS5A01G532600 chr5A_690307328 chr5A 690307328 C G C G 3 missense_variant MODERATE transcript non_Triplet 690304206 690307956 3751 5 0.133297787256732 RFvsST 623492647 708805841 85313195 no 216.773507635321 TraesCS5A01G533200 chr5A_690546716 chr5A 690546716 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533200 chr5A_690546611 chr5A 690546611 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533200 chr5A_690546923 chr5A 690546923 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533200 chr5A_690547771 chr5A 690547771 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533200 chr5A_690548798 chr5A 690548798 A G A G 3 synonymous_variant LOW transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533200 chr5A_690546609 chr5A 690546609 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 690546928 690554048 7121 6 0.0842578289566072 RFvsST 623492647 708805841 85313195 no 146.803227699575 TraesCS5A01G533300 chr5A_690564201 chr5A 690564201 A G A G 3 missense_variant MODERATE transcript non_Triplet 690560985 690566674 5690 3 0.0527240773286467 RFvsST 623492647 708805841 85313195 no 60.4789049325208 TraesCS5A01G533300 chr5A_690564353 chr5A 690564353 C T C T 3 missense_variant MODERATE transcript non_Triplet 690560985 690566674 5690 3 0.0527240773286467 RFvsST 623492647 708805841 85313195 no 60.4789049325208 TraesCS5A01G533300 chr5A_690564254 chr5A 690564254 C A C A 3 missense_variant MODERATE transcript non_Triplet 690560985 690566674 5690 3 0.0527240773286467 RFvsST 623492647 708805841 85313195 no 60.4789049325208 TraesCS5A01G542600 chr5A_698508133 chr5A 698508133 C A C A 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 698507356 698510839 3484 4 0.114810562571757 RFvsST 623492647 708805841 85313195 no 488.6316628119 TraesCS5A01G542600 chr5A_698509819 chr5A 698509819 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 698507356 698510839 3484 4 0.114810562571757 RFvsST 623492647 708805841 85313195 no 488.6316628119 TraesCS5A01G542600 chr5A_698508163 chr5A 698508163 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 698507356 698510839 3484 4 0.114810562571757 RFvsST 623492647 708805841 85313195 no 488.6316628119 TraesCS5A01G542600 chr5A_698510016 chr5A 698510016 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 698507356 698510839 3484 4 0.114810562571757 RFvsST 623492647 708805841 85313195 no 488.6316628119 TraesCS5A01G543200 chr5A_699470437 chr5A 699470437 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 699467776 699470352 2577 1 0.0388048117966628 RFvsST 623492647 708805841 85313195 no 258.763121509758 TraesCS5A01G543300 chr5A_699477743 chr5A 699477743 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 699477781 699483926 6146 1 0.0162707452001302 RFvsST 623492647 708805841 85313195 no 20.3620428580462 TraesCS5A01G543400 chr5A_699489204 chr5A 699489204 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 699489293 699489901 609 2 0.328407224958949 RFvsST 623492647 708805841 85313195 no 32.8953525457694 TraesCS5A01G543400 chr5A_699489191 chr5A 699489191 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 699489293 699489901 609 2 0.328407224958949 RFvsST 623492647 708805841 85313195 no 32.8953525457694 TraesCS5A01G544700 chr5A_700208081 chr5A 700208081 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 700208579 700211993 3415 1 0.0292825768667643 RFvsST 623492647 708805841 85313195 no 131.583297344711 TraesCS5A01G544900 chr5A_700347202 chr5A 700347202 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 700347633 700351845 4213 1 0.0237360550676478 RFvsST 623492647 708805841 85313195 no 90.119154086069 TraesCS5A01G546000 chr5A_700448597 chr5A 700448597 G A G A 3 splice_region_variant&stop_retained_variant LOW transcript non_Triplet 700445593 700448598 3006 1 0.0332667997338656 RFvsST 623492647 708805841 85313195 no 17.1820990125445 TraesCS5A01G546100 chr5A_700449949 chr5A 700449949 G T G T 3 synonymous_variant LOW transcript non_Triplet 700448809 700449987 1179 3 0.254452926208651 RFvsST 623492647 708805841 85313195 no 150.306836708552 TraesCS5A01G546100 chr5A_700449940 chr5A 700449940 A G A G 3 synonymous_variant LOW transcript non_Triplet 700448809 700449987 1179 3 0.254452926208651 RFvsST 623492647 708805841 85313195 no 150.306836708552 TraesCS5A01G546100 chr5A_700449181 chr5A 700449181 A G A G 3 synonymous_variant LOW transcript non_Triplet 700448809 700449987 1179 3 0.254452926208651 RFvsST 623492647 708805841 85313195 no 150.306836708552 TraesCS5B01G000400 chr5B_215506 chr5B 215506 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 210311 215424 5114 4 0.0782166601486116 RFvsST 16521 166812010 166795490 no 47.9335005741797 TraesCS5B01G000400 chr5B_215469 chr5B 215469 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 210311 215424 5114 4 0.0782166601486116 RFvsST 16521 166812010 166795490 no 47.9335005741797 TraesCS5B01G000400 chr5B_215659 chr5B 215659 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 210311 215424 5114 4 0.0782166601486116 RFvsST 16521 166812010 166795490 no 47.9335005741797 TraesCS5B01G000400 chr5B_215421 chr5B 215421 G A G A 3 synonymous_variant LOW transcript non_Triplet 210311 215424 5114 4 0.0782166601486116 RFvsST 16521 166812010 166795490 no 47.9335005741797 TraesCS5B01G000600 chr5B_229433 chr5B 229433 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 229460 233000 3541 3 0.0847218299915278 RFvsST 16521 166812010 166795490 no 86.5750731559562 TraesCS5B01G000600 chr5B_233102 chr5B 233102 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 229460 233000 3541 3 0.0847218299915278 RFvsST 16521 166812010 166795490 no 86.5750731559562 TraesCS5B01G000600 chr5B_232228 chr5B 232228 T C T C 3 synonymous_variant LOW transcript non_Triplet 229460 233000 3541 3 0.0847218299915278 RFvsST 16521 166812010 166795490 no 86.5750731559562 TraesCS5B01G003200 chr5B_4867494 chr5B 4867494 T T A A 4 stop_gained HIGH transcript non_Triplet 4867289 4871533 4245 1 0.0235571260306243 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G003900 chr5B_5421017 chr5B 5421017 G A G A 3 synonymous_variant LOW transcript unique_Triplet 5417435 5421278 3844 3 0.0780437044745057 RFvsST 16521 166812010 166795490 no 125.419561345839 TraesCS5B01G003900 chr5B_5421304 chr5B 5421304 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 5417435 5421278 3844 3 0.0780437044745057 RFvsST 16521 166812010 166795490 no 125.419561345839 TraesCS5B01G003900 chr5B_5421137 chr5B 5421137 T A T A 3 synonymous_variant LOW transcript unique_Triplet 5417435 5421278 3844 3 0.0780437044745057 RFvsST 16521 166812010 166795490 no 125.419561345839 TraesCS5B01G005000 chr5B_6646204 chr5B 6646204 T C T C 3 missense_variant MODERATE transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G005000 chr5B_6646060 chr5B 6646060 T C T C 3 missense_variant MODERATE transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G005000 chr5B_6647530 chr5B 6647530 C T C T 3 synonymous_variant LOW transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G005000 chr5B_6647533 chr5B 6647533 A C A C 3 missense_variant MODERATE transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G005000 chr5B_6647444 chr5B 6647444 G T G T 3 missense_variant MODERATE transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G005000 chr5B_6648394 chr5B 6648394 C G C G 3 synonymous_variant LOW transcript unique_Triplet 6645289 6648747 3459 6 0.173460537727667 RFvsST 16521 166812010 166795490 no 186.615413202211 TraesCS5B01G006400 chr5B_7541567 chr5B 7541567 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 7541069 7544050 2982 1 0.0335345405767941 RFvsST 16521 166812010 166795490 no 1056.55302687006 TraesCS5B01G008900 chr5B_9267220 chr5B 9267220 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 9263854 9267212 3359 3 0.0893122953259899 RFvsST 16521 166812010 166795490 no 74.9077766927087 TraesCS5B01G008900 chr5B_9265356 chr5B 9265356 C T C T 3 missense_variant MODERATE transcript unique_Triplet 9263854 9267212 3359 3 0.0893122953259899 RFvsST 16521 166812010 166795490 no 74.9077766927087 TraesCS5B01G008900 chr5B_9265967 chr5B 9265967 A G A G 3 synonymous_variant LOW transcript unique_Triplet 9263854 9267212 3359 3 0.0893122953259899 RFvsST 16521 166812010 166795490 no 74.9077766927087 TraesCS5B01G009200 chr5B_9298990 chr5B 9298990 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 9298720 9299352 633 1 0.157977883096367 RFvsST 16521 166812010 166795490 no 30.9788037618825 TraesCS5B01G010800 chr5B_10448027 chr5B 10448027 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 10442174 10450270 8097 2 0.0247005063603804 RFvsST 16521 166812010 166795490 no 560.759809681602 TraesCS5B01G010800 chr5B_10448166 chr5B 10448166 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 10442174 10450270 8097 2 0.0247005063603804 RFvsST 16521 166812010 166795490 no 560.759809681602 TraesCS5B01G010900 chr5B_10525231 chr5B 10525231 C G C G 3 missense_variant MODERATE transcript non_Triplet 10524675 10527479 2805 4 0.142602495543672 RFvsST 16521 166812010 166795490 no 476.760338489786 TraesCS5B01G010900 chr5B_10526909 chr5B 10526909 C A C A 3 intron_variant MODIFIER transcript non_Triplet 10524675 10527479 2805 4 0.142602495543672 RFvsST 16521 166812010 166795490 no 476.760338489786 TraesCS5B01G010900 chr5B_10524933 chr5B 10524933 G T G T 3 missense_variant MODERATE transcript non_Triplet 10524675 10527479 2805 4 0.142602495543672 RFvsST 16521 166812010 166795490 no 476.760338489786 TraesCS5B01G010900 chr5B_10526206 chr5B 10526206 G T G T 3 synonymous_variant LOW transcript non_Triplet 10524675 10527479 2805 4 0.142602495543672 RFvsST 16521 166812010 166795490 no 476.760338489786 TraesCS5B01G011300 chr5B_11307751 chr5B 11307751 C C A A 4 missense_variant MODERATE transcript non_Triplet 11305740 11308978 3239 3 0.0926211793763507 RFvsST 16521 166812010 166795490 no 327.849228211937 TraesCS5B01G011300 chr5B_11306024 chr5B 11306024 G T G T 3 missense_variant MODERATE transcript non_Triplet 11305740 11308978 3239 3 0.0926211793763507 RFvsST 16521 166812010 166795490 no 327.849228211937 TraesCS5B01G011300 chr5B_11306439 chr5B 11306439 C T C T 3 synonymous_variant LOW transcript non_Triplet 11305740 11308978 3239 3 0.0926211793763507 RFvsST 16521 166812010 166795490 no 327.849228211937 TraesCS5B01G012000 chr5B_11772812 chr5B 11772812 T T C C 4 synonymous_variant LOW transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012000 chr5B_11773709 chr5B 11773709 A A G G 4 synonymous_variant LOW transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012000 chr5B_11773112 chr5B 11773112 G G C C 4 synonymous_variant LOW transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012000 chr5B_11771800 chr5B 11771800 C C T T 4 missense_variant MODERATE transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012000 chr5B_11774225 chr5B 11774225 A A G G 4 synonymous_variant LOW transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012000 chr5B_11773463 chr5B 11773463 G G A A 4 synonymous_variant LOW transcript non_Triplet 11771435 11774488 3054 6 0.196463654223969 RFvsST 16521 166812010 166795490 no 237.264138536896 TraesCS5B01G012200 chr5B_12324381 chr5B 12324381 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 12321266 12322132 867 1 0.115340253748558 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G012400 chr5B_12332487 chr5B 12332487 C C T T 4 missense_variant MODERATE transcript non_Triplet 12330285 12334504 4220 4 0.0947867298578199 RFvsST 16521 166812010 166795490 no 166.848533239687 TraesCS5B01G012400 chr5B_12334475 chr5B 12334475 G G C C 4 synonymous_variant LOW transcript non_Triplet 12330285 12334504 4220 4 0.0947867298578199 RFvsST 16521 166812010 166795490 no 166.848533239687 TraesCS5B01G012400 chr5B_12332576 chr5B 12332576 G G C C 4 synonymous_variant LOW transcript non_Triplet 12330285 12334504 4220 4 0.0947867298578199 RFvsST 16521 166812010 166795490 no 166.848533239687 TraesCS5B01G012400 chr5B_12332416 chr5B 12332416 T T C C 4 missense_variant MODERATE transcript non_Triplet 12330285 12334504 4220 4 0.0947867298578199 RFvsST 16521 166812010 166795490 no 166.848533239687 TraesCS5B01G012600 chr5B_12574046 chr5B 12574046 T T A A 4 missense_variant MODERATE transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012600 chr5B_12573446 chr5B 12573446 C C T T 4 missense_variant MODERATE transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012600 chr5B_12574399 chr5B 12574399 A A G G 4 missense_variant MODERATE transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012600 chr5B_12571801 chr5B 12571801 C C G G 4 missense_variant MODERATE transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012600 chr5B_12573853 chr5B 12573853 G G A A 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012600 chr5B_12577265 chr5B 12577265 A A T T 4 synonymous_variant LOW transcript non_Triplet 12571781 12577424 5644 6 0.106307583274274 RFvsST 16521 166812010 166795490 no 207.970111465009 TraesCS5B01G012700 chr5B_12577493 chr5B 12577493 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 12580692 12582479 1788 2 0.111856823266219 RFvsST 16521 166812010 166795490 no 9.93618894829127 TraesCS5B01G012700 chr5B_12577431 chr5B 12577431 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 12580692 12582479 1788 2 0.111856823266219 RFvsST 16521 166812010 166795490 no 9.93618894829127 TraesCS5B01G012900 chr5B_12847406 chr5B 12847406 G G A A 4 synonymous_variant LOW transcript unique_Triplet 12845460 12858464 13005 4 0.0307574009996155 RFvsST 16521 166812010 166795490 no 268.200286373793 TraesCS5B01G012900 chr5B_12849908 chr5B 12849908 A A G G 4 missense_variant MODERATE transcript unique_Triplet 12845460 12858464 13005 4 0.0307574009996155 RFvsST 16521 166812010 166795490 no 268.200286373793 TraesCS5B01G012900 chr5B_12849343 chr5B 12849343 C C T T 4 missense_variant MODERATE transcript unique_Triplet 12845460 12858464 13005 4 0.0307574009996155 RFvsST 16521 166812010 166795490 no 268.200286373793 TraesCS5B01G012900 chr5B_12847237 chr5B 12847237 T T C C 4 missense_variant MODERATE transcript unique_Triplet 12845460 12858464 13005 4 0.0307574009996155 RFvsST 16521 166812010 166795490 no 268.200286373793 TraesCS5B01G013100 chr5B_13179357 chr5B 13179357 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 13175214 13178026 2813 2 0.0710984713828653 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G013100 chr5B_13179351 chr5B 13179351 A A C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 13175214 13178026 2813 2 0.0710984713828653 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G013400 chr5B_13225152 chr5B 13225152 C T C T 3 synonymous_variant LOW transcript unique_Triplet 13225026 13225265 240 1 0.416666666666667 RFvsST 16521 166812010 166795490 no 36.8315324236426 TraesCS5B01G014200 chr5B_13700313 chr5B 13700313 G G A A 4 synonymous_variant LOW transcript unique_Triplet 13699906 13702365 2460 1 0.040650406504065 RFvsST 16521 166812010 166795490 no 459.808100236387 TraesCS5B01G014500 chr5B_13725230 chr5B 13725230 C C T T 4 synonymous_variant LOW transcript unique_Triplet 13721857 13725934 4078 1 0.0245218244237371 RFvsST 16521 166812010 166795490 no 22.8860452389414 TraesCS5B01G016700 chr5B_15322747 chr5B 15322747 A G A G 3 missense_variant MODERATE transcript unique_Triplet 15321401 15323490 2090 1 0.0478468899521531 RFvsST 16521 166812010 166795490 no 19.9064733531636 TraesCS5B01G017700 chr5B_16421440 chr5B 16421440 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 16419933 16420730 798 4 0.50125313283208 RFvsST 16521 166812010 166795490 no 105.681734995022 TraesCS5B01G017700 chr5B_16420151 chr5B 16420151 T C T C 3 synonymous_variant LOW transcript unique_Triplet 16419933 16420730 798 4 0.50125313283208 RFvsST 16521 166812010 166795490 no 105.681734995022 TraesCS5B01G017700 chr5B_16419901 chr5B 16419901 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 16419933 16420730 798 4 0.50125313283208 RFvsST 16521 166812010 166795490 no 105.681734995022 TraesCS5B01G017700 chr5B_16420205 chr5B 16420205 G T G T 3 synonymous_variant LOW transcript unique_Triplet 16419933 16420730 798 4 0.50125313283208 RFvsST 16521 166812010 166795490 no 105.681734995022 TraesCS5B01G017900 chr5B_17544857 chr5B 17544857 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17545038 17547613 2576 1 0.0388198757763975 RFvsST 16521 166812010 166795490 no 875.817087468206 TraesCS5B01G018500 chr5B_17965485 chr5B 17965485 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 17965602 17968481 2880 4 0.138888888888889 RFvsST 16521 166812010 166795490 no 5.64650532649685 TraesCS5B01G018500 chr5B_17967884 chr5B 17967884 T C T C 3 synonymous_variant LOW transcript non_Triplet 17965602 17968481 2880 4 0.138888888888889 RFvsST 16521 166812010 166795490 no 5.64650532649685 TraesCS5B01G018500 chr5B_17965535 chr5B 17965535 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17965602 17968481 2880 4 0.138888888888889 RFvsST 16521 166812010 166795490 no 5.64650532649685 TraesCS5B01G018500 chr5B_17965570 chr5B 17965570 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17965602 17968481 2880 4 0.138888888888889 RFvsST 16521 166812010 166795490 no 5.64650532649685 TraesCS5B01G018600 chr5B_17968974 chr5B 17968974 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 17971355 17974292 2938 5 0.170183798502383 RFvsST 16521 166812010 166795490 no 401.906277176032 TraesCS5B01G018600 chr5B_17968941 chr5B 17968941 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17971355 17974292 2938 5 0.170183798502383 RFvsST 16521 166812010 166795490 no 401.906277176032 TraesCS5B01G018600 chr5B_17968808 chr5B 17968808 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 17971355 17974292 2938 5 0.170183798502383 RFvsST 16521 166812010 166795490 no 401.906277176032 TraesCS5B01G018600 chr5B_17969070 chr5B 17969070 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 17971355 17974292 2938 5 0.170183798502383 RFvsST 16521 166812010 166795490 no 401.906277176032 TraesCS5B01G018600 chr5B_17968963 chr5B 17968963 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 17971355 17974292 2938 5 0.170183798502383 RFvsST 16521 166812010 166795490 no 401.906277176032 TraesCS5B01G019600 chr5B_19438694 chr5B 19438694 C C T T 4 missense_variant MODERATE transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19438689 chr5B 19438689 A A C C 4 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19439928 chr5B 19439928 T T C C 4 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19438502 chr5B 19438502 G C G C 3 missense_variant MODERATE transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19438935 chr5B 19438935 A C A C 3 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19439151 chr5B 19439151 G A G A 3 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19438695 chr5B 19438695 G A G A 3 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19438793 chr5B 19438793 A A G G 4 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19439148 chr5B 19439148 G G T T 4 synonymous_variant LOW transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19441429 chr5B 19441429 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19441460 chr5B 19441460 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G019600 chr5B_19441290 chr5B 19441290 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 19438473 19440260 1788 12 0.671140939597315 RFvsST 16521 166812010 166795490 no 131.663340098924 TraesCS5B01G022300 chr5B_20833298 chr5B 20833298 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 20829916 20833224 3309 5 0.151103052281656 RFvsST 16521 166812010 166795490 no 66.1951705832809 TraesCS5B01G022300 chr5B_20829690 chr5B 20829690 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 20829916 20833224 3309 5 0.151103052281656 RFvsST 16521 166812010 166795490 no 66.1951705832809 TraesCS5B01G022300 chr5B_20833333 chr5B 20833333 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 20829916 20833224 3309 5 0.151103052281656 RFvsST 16521 166812010 166795490 no 66.1951705832809 TraesCS5B01G022300 chr5B_20831567 chr5B 20831567 C C T T 4 synonymous_variant LOW transcript non_Triplet 20829916 20833224 3309 5 0.151103052281656 RFvsST 16521 166812010 166795490 no 66.1951705832809 TraesCS5B01G022300 chr5B_20829707 chr5B 20829707 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 20829916 20833224 3309 5 0.151103052281656 RFvsST 16521 166812010 166795490 no 66.1951705832809 TraesCS5B01G022900 chr5B_21405502 chr5B 21405502 C C T T 4 missense_variant MODERATE transcript unique_Triplet 21401369 21405671 4303 1 0.0232396002788752 RFvsST 16521 166812010 166795490 no 55.8757228194693 TraesCS5B01G023200 chr5B_21534861 chr5B 21534861 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 21532074 21534415 2342 1 0.0426985482493595 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G023300 chr5B_21538835 chr5B 21538835 A T A T 3 missense_variant MODERATE transcript non_Triplet 21535164 21538910 3747 2 0.0533760341606619 RFvsST 16521 166812010 166795490 no 876.245700649496 TraesCS5B01G023300 chr5B_21539037 chr5B 21539037 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 21535164 21538910 3747 2 0.0533760341606619 RFvsST 16521 166812010 166795490 no 876.245700649496 TraesCS5B01G025200 chr5B_24100036 chr5B 24100036 G A G A 3 missense_variant MODERATE transcript unique_Triplet 24097144 24100530 3387 2 0.0590493061706525 RFvsST 16521 166812010 166795490 no 225.58634090317 TraesCS5B01G025200 chr5B_24097971 chr5B 24097971 G G T T 4 synonymous_variant LOW transcript unique_Triplet 24097144 24100530 3387 2 0.0590493061706525 RFvsST 16521 166812010 166795490 no 225.58634090317 TraesCS5B01G026000 chr5B_24675515 chr5B 24675515 T T C C 4 synonymous_variant LOW transcript non_Triplet 24666376 24677017 10642 1 0.00939672993798158 RFvsST 16521 166812010 166795490 no 105.63298166698 TraesCS5B01G027300 chr5B_26450312 chr5B 26450312 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 26445358 26447080 1723 3 0.174114915844457 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G027300 chr5B_26450421 chr5B 26450421 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 26445358 26447080 1723 3 0.174114915844457 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G027300 chr5B_26449466 chr5B 26449466 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 26445358 26447080 1723 3 0.174114915844457 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G027900 chr5B_26950989 chr5B 26950989 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 26948094 26950487 2394 2 0.0835421888053467 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G027900 chr5B_26950961 chr5B 26950961 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 26948094 26950487 2394 2 0.0835421888053467 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G028000 chr5B_26952154 chr5B 26952154 G G T T 4 synonymous_variant LOW transcript non_Triplet 26951008 26952303 1296 3 0.231481481481481 RFvsST 16521 166812010 166795490 no 83.3410731342958 TraesCS5B01G028000 chr5B_26952241 chr5B 26952241 G G C C 4 synonymous_variant LOW transcript non_Triplet 26951008 26952303 1296 3 0.231481481481481 RFvsST 16521 166812010 166795490 no 83.3410731342958 TraesCS5B01G028000 chr5B_26952199 chr5B 26952199 G G C C 4 synonymous_variant LOW transcript non_Triplet 26951008 26952303 1296 3 0.231481481481481 RFvsST 16521 166812010 166795490 no 83.3410731342958 TraesCS5B01G028200 chr5B_27295095 chr5B 27295095 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 27293772 27299819 6048 1 0.0165343915343915 RFvsST 16521 166812010 166795490 no 124.257621857088 TraesCS5B01G028300 chr5B_27459985 chr5B 27459985 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028300 chr5B_27461761 chr5B 27461761 T T C C 4 missense_variant MODERATE transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028300 chr5B_27459935 chr5B 27459935 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028300 chr5B_27461151 chr5B 27461151 C T C T 3 missense_variant MODERATE transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028300 chr5B_27460048 chr5B 27460048 G G A A 4 synonymous_variant LOW transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028300 chr5B_27459941 chr5B 27459941 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 27459925 27461827 1903 6 0.315291644771414 RFvsST 16521 166812010 166795490 no 135.999202188785 TraesCS5B01G028400 chr5B_27486084 chr5B 27486084 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 27486367 27487458 1092 3 0.274725274725275 RFvsST 16521 166812010 166795490 no 125.996244602008 TraesCS5B01G028400 chr5B_27488209 chr5B 27488209 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 27486367 27487458 1092 3 0.274725274725275 RFvsST 16521 166812010 166795490 no 125.996244602008 TraesCS5B01G028400 chr5B_27488192 chr5B 27488192 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 27486367 27487458 1092 3 0.274725274725275 RFvsST 16521 166812010 166795490 no 125.996244602008 TraesCS5B01G029100 chr5B_27839807 chr5B 27839807 A G A G 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G029100 chr5B_27830630 chr5B 27830630 C T C T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G029100 chr5B_27839717 chr5B 27839717 C C T T 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G029100 chr5B_27830704 chr5B 27830704 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G029100 chr5B_27839619 chr5B 27839619 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G029100 chr5B_27830790 chr5B 27830790 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 27830168 27839871 9704 6 0.0618301731244847 RFvsST 16521 166812010 166795490 no 256.673744385393 TraesCS5B01G030400 chr5B_33628167 chr5B 33628167 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 33625595 33628829 3235 1 0.0309119010819165 RFvsST 16521 166812010 166795490 no 810.188605962488 TraesCS5B01G030600 chr5B_33999976 chr5B 33999976 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 33999364 34000638 1275 2 0.156862745098039 RFvsST 16521 166812010 166795490 no 295.843358471387 TraesCS5B01G030600 chr5B_34000165 chr5B 34000165 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 33999364 34000638 1275 2 0.156862745098039 RFvsST 16521 166812010 166795490 no 295.843358471387 TraesCS5B01G030700 chr5B_34009410 chr5B 34009410 C C T T 4 synonymous_variant LOW transcript unique_Triplet 34005965 34009717 3753 1 0.0266453503863576 RFvsST 16521 166812010 166795490 no 2.80238687768233 TraesCS5B01G030800 chr5B_34038708 chr5B 34038708 T T C C 4 synonymous_variant LOW transcript non_Triplet 34038649 34041715 3067 1 0.032605151613955 RFvsST 16521 166812010 166795490 no 97.2592378076326 TraesCS5B01G032200 chr5B_35527342 chr5B 35527342 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 35529274 35530979 1706 4 0.234466588511137 RFvsST 16521 166812010 166795490 no 40.9200404329429 TraesCS5B01G032200 chr5B_35529881 chr5B 35529881 G G A A 4 synonymous_variant LOW transcript unique_Triplet 35529274 35530979 1706 4 0.234466588511137 RFvsST 16521 166812010 166795490 no 40.9200404329429 TraesCS5B01G032200 chr5B_35529065 chr5B 35529065 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 35529274 35530979 1706 4 0.234466588511137 RFvsST 16521 166812010 166795490 no 40.9200404329429 TraesCS5B01G032200 chr5B_35530910 chr5B 35530910 C C T T 4 synonymous_variant LOW transcript unique_Triplet 35529274 35530979 1706 4 0.234466588511137 RFvsST 16521 166812010 166795490 no 40.9200404329429 TraesCS5B01G032900 chr5B_36218331 chr5B 36218331 A A G G 4 missense_variant MODERATE transcript unique_Triplet 36217876 36221670 3795 1 0.0263504611330698 RFvsST 16521 166812010 166795490 no 24.6053435234047 TraesCS5B01G033700 chr5B_36739756 chr5B 36739756 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 36733897 36735923 2027 4 0.197335964479526 RFvsST 16521 166812010 166795490 no 11.9226246628624 TraesCS5B01G033700 chr5B_36739242 chr5B 36739242 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 36733897 36735923 2027 4 0.197335964479526 RFvsST 16521 166812010 166795490 no 11.9226246628624 TraesCS5B01G033700 chr5B_36738795 chr5B 36738795 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 36733897 36735923 2027 4 0.197335964479526 RFvsST 16521 166812010 166795490 no 11.9226246628624 TraesCS5B01G033700 chr5B_36739456 chr5B 36739456 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 36733897 36735923 2027 4 0.197335964479526 RFvsST 16521 166812010 166795490 no 11.9226246628624 TraesCS5B01G035000 chr5B_38158335 chr5B 38158335 A A G G 4 synonymous_variant LOW transcript non_Triplet 38157666 38160207 2542 3 0.11801730920535 RFvsST 16521 166812010 166795490 no 112.720282801916 TraesCS5B01G035000 chr5B_38159322 chr5B 38159322 A A G G 4 missense_variant MODERATE transcript non_Triplet 38157666 38160207 2542 3 0.11801730920535 RFvsST 16521 166812010 166795490 no 112.720282801916 TraesCS5B01G035000 chr5B_38158758 chr5B 38158758 A A T T 4 synonymous_variant LOW transcript non_Triplet 38157666 38160207 2542 3 0.11801730920535 RFvsST 16521 166812010 166795490 no 112.720282801916 TraesCS5B01G035200 chr5B_38168559 chr5B 38168559 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 38166757 38168520 1764 1 0.0566893424036281 RFvsST 16521 166812010 166795490 no 3073.53534365152 TraesCS5B01G036600 chr5B_40787494 chr5B 40787494 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40785559 chr5B 40785559 G G A A 4 synonymous_variant LOW transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40788568 chr5B 40788568 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784813 chr5B 40784813 A A T T 4 synonymous_variant LOW transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40788083 chr5B 40788083 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784942 chr5B 40784942 G G A A 4 synonymous_variant LOW transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784780 chr5B 40784780 G G A A 4 synonymous_variant LOW transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40786629 chr5B 40786629 T T C C 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40786538 chr5B 40786538 G G A A 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40786985 chr5B 40786985 C C T T 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40787553 chr5B 40787553 G G A A 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40785545 chr5B 40785545 C C G G 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784616 chr5B 40784616 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784676 chr5B 40784676 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40784738 chr5B 40784738 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40785179 chr5B 40785179 A A G G 4 synonymous_variant LOW transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40786107 chr5B 40786107 C C A A 4 missense_variant MODERATE transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40788044 chr5B 40788044 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036600 chr5B_40789349 chr5B 40789349 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 40784777 40789970 5194 19 0.365806700038506 RFvsST 16521 166812010 166795490 no 1255.65088352058 TraesCS5B01G036800 chr5B_41094897 chr5B 41094897 G G A A 4 intron_variant MODIFIER transcript non_Triplet 41094151 41096814 2664 1 0.0375375375375375 RFvsST 16521 166812010 166795490 no 10727.9805817688 TraesCS5B01G037000 chr5B_41275987 chr5B 41275987 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 41271192 41271995 804 2 0.248756218905473 RFvsST 16521 166812010 166795490 no 71.0686736902545 TraesCS5B01G037000 chr5B_41271441 chr5B 41271441 A A G G 4 missense_variant MODERATE transcript non_Triplet 41271192 41271995 804 2 0.248756218905473 RFvsST 16521 166812010 166795490 no 71.0686736902545 TraesCS5B01G037100 chr5B_41274807 chr5B 41274807 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41275138 chr5B 41275138 C C A A 4 synonymous_variant LOW transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274314 chr5B 41274314 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41275029 chr5B 41275029 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274296 chr5B 41274296 G G C C 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41273640 chr5B 41273640 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274838 chr5B 41274838 C C T T 4 synonymous_variant LOW transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274603 chr5B 41274603 C C T T 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274615 chr5B 41274615 A A T T 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274806 chr5B 41274806 G G T T 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274877 chr5B 41274877 C C G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037100 chr5B_41274450 chr5B 41274450 A A G G 4 missense_variant MODERATE transcript unique_Triplet 41272205 41275326 3122 12 0.384368994234465 RFvsST 16521 166812010 166795490 no 233.936450763247 TraesCS5B01G037700 chr5B_42158172 chr5B 42158172 G G A A 4 synonymous_variant LOW transcript non_Triplet 42158013 42158180 168 2 1.19047619047619 RFvsST 16521 166812010 166795490 no 22.4897113287306 TraesCS5B01G037700 chr5B_42160418 chr5B 42160418 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 42158013 42158180 168 2 1.19047619047619 RFvsST 16521 166812010 166795490 no 22.4897113287306 TraesCS5B01G038400 chr5B_43689647 chr5B 43689647 T T G G 4 missense_variant MODERATE transcript unique_Triplet 43688397 43691815 3419 2 0.0584966364434045 RFvsST 16521 166812010 166795490 no 98.2944150124123 TraesCS5B01G038400 chr5B_43690527 chr5B 43690527 C C G G 4 missense_variant MODERATE transcript unique_Triplet 43688397 43691815 3419 2 0.0584966364434045 RFvsST 16521 166812010 166795490 no 98.2944150124123 TraesCS5B01G040700 chr5B_45204381 chr5B 45204381 T T G G 4 synonymous_variant LOW transcript non_Triplet 45204094 45207279 3186 5 0.156936597614564 RFvsST 16521 166812010 166795490 no 72.6273432581998 TraesCS5B01G040700 chr5B_45206952 chr5B 45206952 C C T T 4 synonymous_variant LOW transcript non_Triplet 45204094 45207279 3186 5 0.156936597614564 RFvsST 16521 166812010 166795490 no 72.6273432581998 TraesCS5B01G040700 chr5B_45205319 chr5B 45205319 G G A A 4 missense_variant MODERATE transcript non_Triplet 45204094 45207279 3186 5 0.156936597614564 RFvsST 16521 166812010 166795490 no 72.6273432581998 TraesCS5B01G040700 chr5B_45207305 chr5B 45207305 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 45204094 45207279 3186 5 0.156936597614564 RFvsST 16521 166812010 166795490 no 72.6273432581998 TraesCS5B01G040700 chr5B_45207311 chr5B 45207311 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 45204094 45207279 3186 5 0.156936597614564 RFvsST 16521 166812010 166795490 no 72.6273432581998 TraesCS5B01G041800 chr5B_45876471 chr5B 45876471 C C G G 4 synonymous_variant LOW transcript unique_Triplet 45874397 45877218 2822 2 0.070871722182849 RFvsST 16521 166812010 166795490 no 190.003807070294 TraesCS5B01G041800 chr5B_45876689 chr5B 45876689 A A C C 4 missense_variant MODERATE transcript unique_Triplet 45874397 45877218 2822 2 0.070871722182849 RFvsST 16521 166812010 166795490 no 190.003807070294 TraesCS5B01G042800 chr5B_47584250 chr5B 47584250 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 47576434 47579718 3285 1 0.030441400304414 RFvsST 16521 166812010 166795490 no 24.4377436531894 TraesCS5B01G042900 chr5B_47587005 chr5B 47587005 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 47584488 47586389 1902 4 0.210304942166141 RFvsST 16521 166812010 166795490 no 316.784145545058 TraesCS5B01G042900 chr5B_47586797 chr5B 47586797 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 47584488 47586389 1902 4 0.210304942166141 RFvsST 16521 166812010 166795490 no 316.784145545058 TraesCS5B01G042900 chr5B_47588060 chr5B 47588060 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 47584488 47586389 1902 4 0.210304942166141 RFvsST 16521 166812010 166795490 no 316.784145545058 TraesCS5B01G042900 chr5B_47587079 chr5B 47587079 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 47584488 47586389 1902 4 0.210304942166141 RFvsST 16521 166812010 166795490 no 316.784145545058 TraesCS5B01G043100 chr5B_47728575 chr5B 47728575 G G A A 4 missense_variant MODERATE transcript non_Triplet 47728058 47730561 2504 3 0.119808306709265 RFvsST 16521 166812010 166795490 no 83.6751980086711 TraesCS5B01G043100 chr5B_47727616 chr5B 47727616 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 47728058 47730561 2504 3 0.119808306709265 RFvsST 16521 166812010 166795490 no 83.6751980086711 TraesCS5B01G043100 chr5B_47730216 chr5B 47730216 T T G G 4 missense_variant MODERATE transcript non_Triplet 47728058 47730561 2504 3 0.119808306709265 RFvsST 16521 166812010 166795490 no 83.6751980086711 TraesCS5B01G044300 chr5B_49559427 chr5B 49559427 G G A A 4 synonymous_variant LOW transcript unique_Triplet 49558517 49569856 11340 1 0.00881834215167549 RFvsST 16521 166812010 166795490 no 64.4510726115666 TraesCS5B01G046300 chr5B_51836759 chr5B 51836759 G A G A 3 missense_variant MODERATE transcript unique_Triplet 51831361 51838743 7383 1 0.0135446295543817 RFvsST 16521 166812010 166795490 no 169.246256248613 TraesCS5B01G049800 chr5B_55308208 chr5B 55308208 C C T T 4 synonymous_variant LOW transcript unique_Triplet 55307942 55311492 3551 1 0.0281610813855252 RFvsST 16521 166812010 166795490 no 55.2316211110629 TraesCS5B01G057200 chr5B_63293339 chr5B 63293339 G A G A 3 intron_variant MODIFIER transcript non_Triplet 63285171 63298067 12897 1 0.00775374118011941 RFvsST 16521 166812010 166795490 no 158.537941873658 TraesCS5B01G059500 chr5B_65588046 chr5B 65588046 C C G G 4 missense_variant MODERATE transcript non_Triplet 65586563 65588449 1887 1 0.0529941706412295 RFvsST 16521 166812010 166795490 no 150.94500293208 TraesCS5B01G061400 chr5B_68842543 chr5B 68842543 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 68843912 68845640 1729 1 0.0578368999421631 RFvsST 16521 166812010 166795490 no 388.849308773926 TraesCS5B01G061700 chr5B_69132402 chr5B 69132402 C T C T 3 missense_variant MODERATE transcript unique_Triplet 69129650 69140362 10713 5 0.0466722673387473 RFvsST 16521 166812010 166795490 no 332.013583715035 TraesCS5B01G061700 chr5B_69136760 chr5B 69136760 T C T C 3 missense_variant MODERATE transcript unique_Triplet 69129650 69140362 10713 5 0.0466722673387473 RFvsST 16521 166812010 166795490 no 332.013583715035 TraesCS5B01G061700 chr5B_69134250 chr5B 69134250 A A C C 4 missense_variant MODERATE transcript unique_Triplet 69129650 69140362 10713 5 0.0466722673387473 RFvsST 16521 166812010 166795490 no 332.013583715035 TraesCS5B01G061700 chr5B_69143210 chr5B 69143210 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69129650 69140362 10713 5 0.0466722673387473 RFvsST 16521 166812010 166795490 no 332.013583715035 TraesCS5B01G061700 chr5B_69143466 chr5B 69143466 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 69129650 69140362 10713 5 0.0466722673387473 RFvsST 16521 166812010 166795490 no 332.013583715035 TraesCS5B01G061900 chr5B_69547097 chr5B 69547097 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 69546938 69552385 5448 2 0.0367107195301028 RFvsST 16521 166812010 166795490 no 45.3250537790423 TraesCS5B01G061900 chr5B_69547143 chr5B 69547143 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 69546938 69552385 5448 2 0.0367107195301028 RFvsST 16521 166812010 166795490 no 45.3250537790423 TraesCS5B01G062000 chr5B_69558776 chr5B 69558776 T C T C 3 synonymous_variant LOW transcript unique_Triplet 69554459 69561414 6956 1 0.0143760782058654 RFvsST 16521 166812010 166795490 no 44.4535540631695 TraesCS5B01G062200 chr5B_69856706 chr5B 69856706 C C T T 4 synonymous_variant LOW transcript non_Triplet 69856166 69859463 3298 1 0.0303214069132808 RFvsST 16521 166812010 166795490 no 62.0045742514908 TraesCS5B01G062500 chr5B_70265668 chr5B 70265668 G C G C 3 synonymous_variant LOW transcript unique_Triplet 70265630 70271510 5881 2 0.0340078217990138 RFvsST 16521 166812010 166795490 no 83.9976877910846 TraesCS5B01G062500 chr5B_70270151 chr5B 70270151 C C T T 4 synonymous_variant LOW transcript unique_Triplet 70265630 70271510 5881 2 0.0340078217990138 RFvsST 16521 166812010 166795490 no 83.9976877910846 TraesCS5B01G063000 chr5B_70791647 chr5B 70791647 G A G A 3 missense_variant MODERATE transcript unique_Triplet 70791487 70798335 6849 1 0.014600671630895 RFvsST 16521 166812010 166795490 no 67.8616756836567 TraesCS5B01G063300 chr5B_70911057 chr5B 70911057 T T G G 4 synonymous_variant LOW transcript unique_Triplet 70908962 70913334 4373 1 0.0228675966155957 RFvsST 16521 166812010 166795490 no 66.1959529687297 TraesCS5B01G064100 chr5B_72016573 chr5B 72016573 G A G A 3 synonymous_variant LOW transcript unique_Triplet 72015973 72019214 3242 2 0.0616903146206046 RFvsST 16521 166812010 166795490 no 554.211643309452 TraesCS5B01G064100 chr5B_72018073 chr5B 72018073 G G C C 4 missense_variant MODERATE transcript unique_Triplet 72015973 72019214 3242 2 0.0616903146206046 RFvsST 16521 166812010 166795490 no 554.211643309452 TraesCS5B01G064500 chr5B_72104324 chr5B 72104324 C C T T 4 missense_variant MODERATE transcript unique_Triplet 72100008 72104632 4625 2 0.0432432432432432 RFvsST 16521 166812010 166795490 no 100.249663021421 TraesCS5B01G064500 chr5B_72108004 chr5B 72108004 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 72100008 72104632 4625 2 0.0432432432432432 RFvsST 16521 166812010 166795490 no 100.249663021421 TraesCS5B01G064600 chr5B_72110911 chr5B 72110911 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 72108134 72110887 2754 1 0.0363108206245461 RFvsST 16521 166812010 166795490 no 134.516640079134 TraesCS5B01G065200 chr5B_73348632 chr5B 73348632 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 73347843 73348447 605 4 0.661157024793388 RFvsST 16521 166812010 166795490 no 455.285970162123 TraesCS5B01G065200 chr5B_73348578 chr5B 73348578 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 73347843 73348447 605 4 0.661157024793388 RFvsST 16521 166812010 166795490 no 455.285970162123 TraesCS5B01G065200 chr5B_73348695 chr5B 73348695 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 73347843 73348447 605 4 0.661157024793388 RFvsST 16521 166812010 166795490 no 455.285970162123 TraesCS5B01G065200 chr5B_73347651 chr5B 73347651 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 73347843 73348447 605 4 0.661157024793388 RFvsST 16521 166812010 166795490 no 455.285970162123 TraesCS5B01G066400 chr5B_74633191 chr5B 74633191 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 74633584 74635962 2379 3 0.126103404791929 RFvsST 16521 166812010 166795490 no 319.688282266019 TraesCS5B01G066400 chr5B_74633673 chr5B 74633673 T G T G 3 missense_variant MODERATE transcript unique_Triplet 74633584 74635962 2379 3 0.126103404791929 RFvsST 16521 166812010 166795490 no 319.688282266019 TraesCS5B01G066400 chr5B_74634308 chr5B 74634308 C T C T 3 synonymous_variant LOW transcript unique_Triplet 74633584 74635962 2379 3 0.126103404791929 RFvsST 16521 166812010 166795490 no 319.688282266019 TraesCS5B01G068900 chr5B_78708074 chr5B 78708074 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 78705691 78707089 1399 1 0.0714796283059328 RFvsST 16521 166812010 166795490 no No_match TraesCS5B01G071400 chr5B_82465262 chr5B 82465262 T G T G 3 synonymous_variant LOW transcript unique_Triplet 82464380 82468614 4235 1 0.0236127508854782 RFvsST 16521 166812010 166795490 no 82.4294759934198 TraesCS5B01G071600 chr5B_82904834 chr5B 82904834 T T A A 4 missense_variant MODERATE transcript unique_Triplet 82898857 82906668 7812 1 0.0128008192524322 RFvsST 16521 166812010 166795490 no 313.227013557484 TraesCS5B01G074300 chr5B_88341195 chr5B 88341195 G T G T 3 stop_gained HIGH transcript non_Triplet 88340247 88341266 1020 1 0.0980392156862745 RFvsST 16521 166812010 166795490 no 93.5843124364311 TraesCS5B01G077500 chr5B_93459983 chr5B 93459983 G G A A 4 missense_variant MODERATE transcript non_Triplet 93457432 93468389 10958 1 0.00912575287461215 RFvsST 16521 166812010 166795490 no 112.007503663948 TraesCS5B01G078800 chr5B_95514357 chr5B 95514357 T C T C 3 intron_variant MODIFIER transcript nonUnique_Triplet 95512280 95515727 3448 1 0.0290023201856148 RFvsST 16521 166812010 166795490 no 1477.4554705761 TraesCS5B01G080400 chr5B_98666401 chr5B 98666401 T C T C 3 missense_variant MODERATE transcript unique_Triplet 98665142 98667939 2798 1 0.0357398141529664 RFvsST 16521 166812010 166795490 no 64.5118478871668 TraesCS5B01G081300 chr5B_101543393 chr5B 101543393 G G A A 4 missense_variant MODERATE transcript unique_Triplet 101541602 101547426 5825 1 0.0171673819742489 RFvsST 16521 166812010 166795490 no 329.300247732695 TraesCS5B01G128000 chr5B_233688225 chr5B 233688225 A C A C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 233688125 233696180 8056 1 0.0124131082423039 RFvsST 134922827 638605184 503682358 no 71.916237058599 TraesCS5B01G129000 chr5B_236283460 chr5B 236283460 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 236283725 236284180 456 1 0.219298245614035 RFvsST 134922827 638605184 503682358 no 28.0906321854091 TraesCS5B01G134700 chr5B_252304500 chr5B 252304500 A A G G 4 missense_variant MODERATE transcript non_Triplet 252304442 252330877 26436 1 0.00378272053260705 RFvsST 134922827 638605184 503682358 no 212.989029645099 TraesCS5B01G136300 chr5B_255968796 chr5B 255968796 T T C C 4 synonymous_variant LOW transcript unique_Triplet 255955374 255975039 19666 1 0.00508491813281806 RFvsST 134922827 638605184 503682358 no 162.794818000346 TraesCS5B01G141000 chr5B_266006590 chr5B 266006590 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 266007989 266014716 6728 1 0.0148632580261593 RFvsST 134922827 638605184 503682358 no 44.8571625880704 TraesCS5B01G149400 chr5B_277269104 chr5B 277269104 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 277265780 277269091 3312 1 0.0301932367149758 RFvsST 134922827 638605184 503682358 no 111.004430352605 TraesCS5B01G151200 chr5B_279097660 chr5B 279097660 A A G G 4 missense_variant MODERATE transcript non_Triplet 279096448 279103822 7375 3 0.0406779661016949 RFvsST 134922827 638605184 503682358 no 271.388574560016 TraesCS5B01G151200 chr5B_279097538 chr5B 279097538 T T A A 4 missense_variant MODERATE transcript non_Triplet 279096448 279103822 7375 3 0.0406779661016949 RFvsST 134922827 638605184 503682358 no 271.388574560016 TraesCS5B01G151200 chr5B_279097462 chr5B 279097462 G G T T 4 missense_variant MODERATE transcript non_Triplet 279096448 279103822 7375 3 0.0406779661016949 RFvsST 134922827 638605184 503682358 no 271.388574560016 TraesCS5B01G151400 chr5B_280598604 chr5B 280598604 C C G G 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 280598407 280602333 3927 1 0.0254647313470843 RFvsST 134922827 638605184 503682358 no 189.268265891396 TraesCS5B01G151900 chr5B_281064599 chr5B 281064599 T T C C 4 missense_variant MODERATE transcript unique_Triplet 281064575 281066222 1648 1 0.0606796116504854 RFvsST 134922827 638605184 503682358 no 27.2063900365443 TraesCS5B01G152300 chr5B_281634772 chr5B 281634772 T T C C 4 synonymous_variant LOW transcript non_Triplet 281631287 281641864 10578 1 0.0094535829079221 RFvsST 134922827 638605184 503682358 no 923.760025160177 TraesCS5B01G152900 chr5B_282046712 chr5B 282046712 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 282045238 282046566 1329 1 0.0752445447705041 RFvsST 134922827 638605184 503682358 no 491.064515223721 TraesCS5B01G155700 chr5B_287797121 chr5B 287797121 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 287791243 287794394 3152 1 0.0317258883248731 RFvsST 134922827 638605184 503682358 no 3.90113182099851 TraesCS5B01G158500 chr5B_292483401 chr5B 292483401 T C T C 3 synonymous_variant LOW transcript unique_Triplet 292479649 292487520 7872 3 0.038109756097561 RFvsST 134922827 638605184 503682358 no 320.148845682744 TraesCS5B01G158500 chr5B_292484061 chr5B 292484061 G A G A 3 synonymous_variant LOW transcript unique_Triplet 292479649 292487520 7872 3 0.038109756097561 RFvsST 134922827 638605184 503682358 no 320.148845682744 TraesCS5B01G158500 chr5B_292487220 chr5B 292487220 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 292479649 292487520 7872 3 0.038109756097561 RFvsST 134922827 638605184 503682358 no 320.148845682744 TraesCS5B01G159000 chr5B_293210468 chr5B 293210468 C G C G 3 synonymous_variant LOW transcript unique_Triplet 293207957 293210745 2789 1 0.0358551452133381 RFvsST 134922827 638605184 503682358 no 228.90874784091 TraesCS5B01G159100 chr5B_293536143 chr5B 293536143 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 293536778 293545692 8915 1 0.0112170499158721 RFvsST 134922827 638605184 503682358 no 35.9522119778859 TraesCS5B01G159300 chr5B_293664602 chr5B 293664602 T C T C 3 missense_variant MODERATE transcript unique_Triplet 293658005 293664879 6875 2 0.0290909090909091 RFvsST 134922827 638605184 503682358 no 142.625679759687 TraesCS5B01G159300 chr5B_293657993 chr5B 293657993 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 293658005 293664879 6875 2 0.0290909090909091 RFvsST 134922827 638605184 503682358 no 142.625679759687 TraesCS5B01G159800 chr5B_294130965 chr5B 294130965 A G A G 3 synonymous_variant LOW transcript unique_Triplet 294127655 294132706 5052 1 0.0197941409342835 RFvsST 134922827 638605184 503682358 no 20.7818839902171 TraesCS5B01G159900 chr5B_294562042 chr5B 294562042 A G A G 3 synonymous_variant LOW transcript unique_Triplet 294553704 294577006 23303 2 0.00858258593314166 RFvsST 134922827 638605184 503682358 no 43.2587999044904 TraesCS5B01G159900 chr5B_294561349 chr5B 294561349 G C G C 3 synonymous_variant LOW transcript unique_Triplet 294553704 294577006 23303 2 0.00858258593314166 RFvsST 134922827 638605184 503682358 no 43.2587999044904 TraesCS5B01G160200 chr5B_295215571 chr5B 295215571 T C T C 3 synonymous_variant LOW transcript unique_Triplet 295206901 295216028 9128 3 0.0328659070990359 RFvsST 134922827 638605184 503682358 no 139.834240817475 TraesCS5B01G160200 chr5B_295214511 chr5B 295214511 C G C G 3 missense_variant MODERATE transcript unique_Triplet 295206901 295216028 9128 3 0.0328659070990359 RFvsST 134922827 638605184 503682358 no 139.834240817475 TraesCS5B01G160200 chr5B_295214181 chr5B 295214181 C T C T 3 missense_variant MODERATE transcript unique_Triplet 295206901 295216028 9128 3 0.0328659070990359 RFvsST 134922827 638605184 503682358 no 139.834240817475 TraesCS5B01G160500 chr5B_295595218 chr5B 295595218 C T C T 3 synonymous_variant LOW transcript unique_Triplet 295586283 295595317 9035 2 0.0221361372440509 RFvsST 134922827 638605184 503682358 no 278.837169597366 TraesCS5B01G160500 chr5B_295587453 chr5B 295587453 C T C T 3 synonymous_variant LOW transcript unique_Triplet 295586283 295595317 9035 2 0.0221361372440509 RFvsST 134922827 638605184 503682358 no 278.837169597366 TraesCS5B01G160900 chr5B_296851119 chr5B 296851119 C G C G 3 missense_variant MODERATE transcript unique_Triplet 296850715 296854871 4157 2 0.0481116189559779 RFvsST 134922827 638605184 503682358 no 404.820250998337 TraesCS5B01G160900 chr5B_296852881 chr5B 296852881 T C T C 3 synonymous_variant LOW transcript unique_Triplet 296850715 296854871 4157 2 0.0481116189559779 RFvsST 134922827 638605184 503682358 no 404.820250998337 TraesCS5B01G161000 chr5B_297039536 chr5B 297039536 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 297027930 297039577 11648 1 0.00858516483516484 RFvsST 134922827 638605184 503682358 no 2498.25973557213 TraesCS5B01G161800 chr5B_298687244 chr5B 298687244 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 298681830 298683218 1389 1 0.0719942404607631 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G161900 chr5B_298702335 chr5B 298702335 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 298693189 298703151 9963 1 0.0100371374084111 RFvsST 134922827 638605184 503682358 no 96.8489276343665 TraesCS5B01G162600 chr5B_299848433 chr5B 299848433 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 299847417 299848148 732 1 0.136612021857924 RFvsST 134922827 638605184 503682358 no 158510.760395758 TraesCS5B01G163000 chr5B_300395269 chr5B 300395269 C G C G 3 missense_variant MODERATE transcript unique_Triplet 300386881 300397790 10910 1 0.00916590284142988 RFvsST 134922827 638605184 503682358 no 64.8892801045499 TraesCS5B01G163400 chr5B_302060988 chr5B 302060988 A C A C 3 missense_variant MODERATE transcript unique_Triplet 302060768 302064528 3761 2 0.0531773464504121 RFvsST 134922827 638605184 503682358 no 72.8725312949396 TraesCS5B01G163400 chr5B_302063406 chr5B 302063406 G A G A 3 missense_variant MODERATE transcript unique_Triplet 302060768 302064528 3761 2 0.0531773464504121 RFvsST 134922827 638605184 503682358 no 72.8725312949396 TraesCS5B01G163500 chr5B_302754059 chr5B 302754059 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 302753506 302754913 1408 1 0.0710227272727273 RFvsST 134922827 638605184 503682358 no 3038.33524998819 TraesCS5B01G163700 chr5B_303222911 chr5B 303222911 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 303223065 303232818 9754 1 0.0102522042239081 RFvsST 134922827 638605184 503682358 no 143.562589354951 TraesCS5B01G164500 chr5B_304607800 chr5B 304607800 G A G A 3 missense_variant MODERATE transcript unique_Triplet 304607319 304629992 22674 1 0.00441033783187792 RFvsST 134922827 638605184 503682358 no 1204.72852665324 TraesCS5B01G164900 chr5B_304823350 chr5B 304823350 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 304818881 304823452 4572 1 0.0218722659667542 RFvsST 134922827 638605184 503682358 no 1099.81092148368 TraesCS5B01G166700 chr5B_308923435 chr5B 308923435 C A G A,G 6 upstream_gene_variant MODIFIER transcript unique_Triplet 308922413 308923037 625 1 0.16 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G166800 chr5B_308928886 chr5B 308928886 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 308923648 308928723 5076 1 0.0197005516154452 RFvsST 134922827 638605184 503682358 no 331.759418367381 TraesCS5B01G166900 chr5B_309005175 chr5B 309005175 T T A A 4 synonymous_variant LOW transcript unique_Triplet 309004770 309008853 4084 3 0.0734573947110676 RFvsST 134922827 638605184 503682358 no 319.632653087072 TraesCS5B01G166900 chr5B_309005514 chr5B 309005514 G A G A 3 synonymous_variant LOW transcript unique_Triplet 309004770 309008853 4084 3 0.0734573947110676 RFvsST 134922827 638605184 503682358 no 319.632653087072 TraesCS5B01G166900 chr5B_309004860 chr5B 309004860 T T G G 4 missense_variant MODERATE transcript unique_Triplet 309004770 309008853 4084 3 0.0734573947110676 RFvsST 134922827 638605184 503682358 no 319.632653087072 TraesCS5B01G167000 chr5B_309028392 chr5B 309028392 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 309028501 309029947 1447 1 0.0691085003455425 RFvsST 134922827 638605184 503682358 no 116.008277757323 TraesCS5B01G167100 chr5B_309383096 chr5B 309383096 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 309383181 309385688 2508 1 0.0398724082934609 RFvsST 134922827 638605184 503682358 no 59.5389147603486 TraesCS5B01G167300 chr5B_309674614 chr5B 309674614 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 309674693 309680380 5688 1 0.0175808720112518 RFvsST 134922827 638605184 503682358 no 61.531818647232 TraesCS5B01G167400 chr5B_309809266 chr5B 309809266 G G A A 4 synonymous_variant LOW transcript unique_Triplet 309805664 309820016 14353 5 0.0348359228035951 RFvsST 134922827 638605184 503682358 no 342.002504929967 TraesCS5B01G167400 chr5B_309809845 chr5B 309809845 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 309805664 309820016 14353 5 0.0348359228035951 RFvsST 134922827 638605184 503682358 no 342.002504929967 TraesCS5B01G167400 chr5B_309815490 chr5B 309815490 G G T T 4 splice_donor_variant&intron_variant HIGH transcript unique_Triplet 309805664 309820016 14353 5 0.0348359228035951 RFvsST 134922827 638605184 503682358 no 342.002504929967 TraesCS5B01G167400 chr5B_309814777 chr5B 309814777 C C T T 4 missense_variant MODERATE transcript unique_Triplet 309805664 309820016 14353 5 0.0348359228035951 RFvsST 134922827 638605184 503682358 no 342.002504929967 TraesCS5B01G167400 chr5B_309815618 chr5B 309815618 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 309805664 309820016 14353 5 0.0348359228035951 RFvsST 134922827 638605184 503682358 no 342.002504929967 TraesCS5B01G167900 chr5B_311071851 chr5B 311071851 A A G G 4 missense_variant MODERATE transcript non_Triplet 311070955 311071913 959 1 0.104275286757039 RFvsST 134922827 638605184 503682358 no 157.218010468856 TraesCS5B01G168000 chr5B_311850988 chr5B 311850988 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 311844843 311846293 1451 1 0.0689179875947622 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G168500 chr5B_312765715 chr5B 312765715 A A G G 4 synonymous_variant LOW transcript unique_Triplet 312755247 312770079 14833 1 0.00674172453313558 RFvsST 134922827 638605184 503682358 no 47.5531228769124 TraesCS5B01G168600 chr5B_312915788 chr5B 312915788 C C G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 312908876 312915971 7096 1 0.0140924464487035 RFvsST 134922827 638605184 503682358 no 299.641462676889 TraesCS5B01G168900 chr5B_313153245 chr5B 313153245 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 313150035 313152225 2191 1 0.0456412596987677 RFvsST 134922827 638605184 503682358 no 119.987392376281 TraesCS5B01G169000 chr5B_313210302 chr5B 313210302 T T C C 4 missense_variant MODERATE transcript unique_Triplet 313209412 313210887 1476 2 0.13550135501355 RFvsST 134922827 638605184 503682358 no 369.174093406099 TraesCS5B01G169000 chr5B_313210687 chr5B 313210687 G G A A 4 synonymous_variant LOW transcript unique_Triplet 313209412 313210887 1476 2 0.13550135501355 RFvsST 134922827 638605184 503682358 no 369.174093406099 TraesCS5B01G169300 chr5B_313349781 chr5B 313349781 T A T A 3 missense_variant MODERATE transcript unique_Triplet 313349647 313350352 706 2 0.28328611898017 RFvsST 134922827 638605184 503682358 no 74.2232266149004 TraesCS5B01G169300 chr5B_313349468 chr5B 313349468 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 313349647 313350352 706 2 0.28328611898017 RFvsST 134922827 638605184 503682358 no 74.2232266149004 TraesCS5B01G169800 chr5B_314299198 chr5B 314299198 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 314293869 314294546 678 1 0.147492625368732 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G169900 chr5B_314305335 chr5B 314305335 C T C T 3 synonymous_variant LOW transcript unique_Triplet 314299260 314305439 6180 2 0.0323624595469256 RFvsST 134922827 638605184 503682358 no 32.7590631907398 TraesCS5B01G169900 chr5B_314299288 chr5B 314299288 G A G A 3 missense_variant MODERATE transcript unique_Triplet 314299260 314305439 6180 2 0.0323624595469256 RFvsST 134922827 638605184 503682358 no 32.7590631907398 TraesCS5B01G170300 chr5B_314972841 chr5B 314972841 C C A A 4 synonymous_variant LOW transcript unique_Triplet 314972605 314973420 816 1 0.122549019607843 RFvsST 134922827 638605184 503682358 no 69.3815248571552 TraesCS5B01G170400 chr5B_315157494 chr5B 315157494 C T C T 3 synonymous_variant LOW transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170400 chr5B_315167939 chr5B 315167939 C T C T 3 synonymous_variant LOW transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170400 chr5B_315183121 chr5B 315183121 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170400 chr5B_315185972 chr5B 315185972 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170400 chr5B_315176414 chr5B 315176414 A G A G 3 synonymous_variant LOW transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170400 chr5B_315176344 chr5B 315176344 C G C G 3 missense_variant MODERATE transcript unique_Triplet 315157202 315183471 26270 6 0.0228397411496003 RFvsST 134922827 638605184 503682358 no 238.814493206728 TraesCS5B01G170800 chr5B_315815039 chr5B 315815039 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 315809330 315814275 4946 1 0.0202183582693085 RFvsST 134922827 638605184 503682358 no 221.598130558642 TraesCS5B01G171700 chr5B_316370081 chr5B 316370081 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 316363960 316368401 4442 1 0.0225123818099955 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G171800 chr5B_316369162 chr5B 316369162 G G T T 4 missense_variant MODERATE transcript unique_Triplet 316369124 316372372 3249 1 0.0307787011388119 RFvsST 134922827 638605184 503682358 no 288.642786966522 TraesCS5B01G171900 chr5B_316378073 chr5B 316378073 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 316378384 316380035 1652 4 0.242130750605327 RFvsST 134922827 638605184 503682358 no 90.5439828859717 TraesCS5B01G171900 chr5B_316380076 chr5B 316380076 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 316378384 316380035 1652 4 0.242130750605327 RFvsST 134922827 638605184 503682358 no 90.5439828859717 TraesCS5B01G171900 chr5B_316379690 chr5B 316379690 T T C C 4 synonymous_variant LOW transcript unique_Triplet 316378384 316380035 1652 4 0.242130750605327 RFvsST 134922827 638605184 503682358 no 90.5439828859717 TraesCS5B01G171900 chr5B_316378473 chr5B 316378473 G A G A 3 synonymous_variant LOW transcript unique_Triplet 316378384 316380035 1652 4 0.242130750605327 RFvsST 134922827 638605184 503682358 no 90.5439828859717 TraesCS5B01G172000 chr5B_316531718 chr5B 316531718 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 316531682 316532328 647 4 0.618238021638331 RFvsST 134922827 638605184 503682358 no 328.201475550655 TraesCS5B01G172000 chr5B_316531858 chr5B 316531858 T T C C 4 missense_variant MODERATE transcript unique_Triplet 316531682 316532328 647 4 0.618238021638331 RFvsST 134922827 638605184 503682358 no 328.201475550655 TraesCS5B01G172000 chr5B_316532215 chr5B 316532215 T T A A 4 missense_variant MODERATE transcript unique_Triplet 316531682 316532328 647 4 0.618238021638331 RFvsST 134922827 638605184 503682358 no 328.201475550655 TraesCS5B01G172000 chr5B_316531728 chr5B 316531728 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 316531682 316532328 647 4 0.618238021638331 RFvsST 134922827 638605184 503682358 no 328.201475550655 TraesCS5B01G172500 chr5B_316721056 chr5B 316721056 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 316705933 316720971 15039 3 0.0199481348493916 RFvsST 134922827 638605184 503682358 no 330.726662785705 TraesCS5B01G172500 chr5B_316705714 chr5B 316705714 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 316705933 316720971 15039 3 0.0199481348493916 RFvsST 134922827 638605184 503682358 no 330.726662785705 TraesCS5B01G172500 chr5B_316706346 chr5B 316706346 A A C C 4 missense_variant MODERATE transcript unique_Triplet 316705933 316720971 15039 3 0.0199481348493916 RFvsST 134922827 638605184 503682358 no 330.726662785705 TraesCS5B01G172800 chr5B_317305382 chr5B 317305382 G G A A 4 missense_variant MODERATE transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317305856 chr5B 317305856 G G T T 4 missense_variant MODERATE transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317310469 chr5B 317310469 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317305732 chr5B 317305732 C T C T 3 missense_variant MODERATE transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317293394 chr5B 317293394 C C T T 4 synonymous_variant LOW transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317310553 chr5B 317310553 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317297528 chr5B 317297528 T T C C 4 synonymous_variant LOW transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172800 chr5B_317296705 chr5B 317296705 T T C C 4 synonymous_variant LOW transcript unique_Triplet 317293014 317306799 13786 8 0.0580298853909764 RFvsST 134922827 638605184 503682358 no 463.475330403065 TraesCS5B01G172900 chr5B_317310771 chr5B 317310771 T T C C 4 synonymous_variant LOW transcript unique_Triplet 317310606 317313190 2585 3 0.11605415860735 RFvsST 134922827 638605184 503682358 no 109.01359752801 TraesCS5B01G172900 chr5B_317312200 chr5B 317312200 T T C C 4 synonymous_variant LOW transcript unique_Triplet 317310606 317313190 2585 3 0.11605415860735 RFvsST 134922827 638605184 503682358 no 109.01359752801 TraesCS5B01G172900 chr5B_317312217 chr5B 317312217 C C G G 4 missense_variant MODERATE transcript unique_Triplet 317310606 317313190 2585 3 0.11605415860735 RFvsST 134922827 638605184 503682358 no 109.01359752801 TraesCS5B01G173300 chr5B_318393465 chr5B 318393465 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 318393325 318397897 4573 4 0.0874699322108025 RFvsST 134922827 638605184 503682358 no 121.633767037938 TraesCS5B01G173300 chr5B_318393565 chr5B 318393565 G G A A 4 synonymous_variant LOW transcript unique_Triplet 318393325 318397897 4573 4 0.0874699322108025 RFvsST 134922827 638605184 503682358 no 121.633767037938 TraesCS5B01G173300 chr5B_318393610 chr5B 318393610 T T A A 4 synonymous_variant LOW transcript unique_Triplet 318393325 318397897 4573 4 0.0874699322108025 RFvsST 134922827 638605184 503682358 no 121.633767037938 TraesCS5B01G173300 chr5B_318395217 chr5B 318395217 G G C C 4 synonymous_variant LOW transcript unique_Triplet 318393325 318397897 4573 4 0.0874699322108025 RFvsST 134922827 638605184 503682358 no 121.633767037938 TraesCS5B01G173500 chr5B_318401768 chr5B 318401768 G G A A 4 synonymous_variant LOW transcript unique_Triplet 318401045 318409598 8554 1 0.0116904372223521 RFvsST 134922827 638605184 503682358 no 158.988764021816 TraesCS5B01G173700 chr5B_318993293 chr5B 318993293 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 318987423 318989696 2274 1 0.0439753737906772 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G173800 chr5B_318995235 chr5B 318995235 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 318993518 319001967 8450 2 0.0236686390532544 RFvsST 134922827 638605184 503682358 no 9.69257940625993 TraesCS5B01G173800 chr5B_318993768 chr5B 318993768 C T C T 3 synonymous_variant LOW transcript unique_Triplet 318993518 319001967 8450 2 0.0236686390532544 RFvsST 134922827 638605184 503682358 no 9.69257940625993 TraesCS5B01G174000 chr5B_319330953 chr5B 319330953 G G A A 4 missense_variant MODERATE transcript non_Triplet 319328196 319330986 2791 1 0.0358294518093873 RFvsST 134922827 638605184 503682358 no 43.3430399507787 TraesCS5B01G174100 chr5B_319338424 chr5B 319338424 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 319335293 319337830 2538 1 0.0394011032308905 RFvsST 134922827 638605184 503682358 no 31.8734967196264 TraesCS5B01G174500 chr5B_320405574 chr5B 320405574 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 320402506 320404332 1827 1 0.0547345374931582 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G174600 chr5B_320406327 chr5B 320406327 G A G A 3 missense_variant MODERATE transcript unique_Triplet 320405713 320419658 13946 3 0.0215115445288972 RFvsST 134922827 638605184 503682358 no 355.444223321166 TraesCS5B01G174600 chr5B_320416513 chr5B 320416513 A A G G 4 synonymous_variant LOW transcript unique_Triplet 320405713 320419658 13946 3 0.0215115445288972 RFvsST 134922827 638605184 503682358 no 355.444223321166 TraesCS5B01G174600 chr5B_320407604 chr5B 320407604 T T C C 4 synonymous_variant LOW transcript unique_Triplet 320405713 320419658 13946 3 0.0215115445288972 RFvsST 134922827 638605184 503682358 no 355.444223321166 TraesCS5B01G174800 chr5B_321203336 chr5B 321203336 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 321203892 321205622 1731 5 0.288850375505488 RFvsST 134922827 638605184 503682358 no 10.3456768345247 TraesCS5B01G174800 chr5B_321204693 chr5B 321204693 G C G C 3 synonymous_variant LOW transcript non_Triplet 321203892 321205622 1731 5 0.288850375505488 RFvsST 134922827 638605184 503682358 no 10.3456768345247 TraesCS5B01G174800 chr5B_321202045 chr5B 321202045 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 321203892 321205622 1731 5 0.288850375505488 RFvsST 134922827 638605184 503682358 no 10.3456768345247 TraesCS5B01G174800 chr5B_321200831 chr5B 321200831 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 321203892 321205622 1731 5 0.288850375505488 RFvsST 134922827 638605184 503682358 no 10.3456768345247 TraesCS5B01G174800 chr5B_321203449 chr5B 321203449 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 321203892 321205622 1731 5 0.288850375505488 RFvsST 134922827 638605184 503682358 no 10.3456768345247 TraesCS5B01G175000 chr5B_321217900 chr5B 321217900 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 321214744 321217821 3078 1 0.032488628979857 RFvsST 134922827 638605184 503682358 no 535.610269161993 TraesCS5B01G175100 chr5B_321413451 chr5B 321413451 G G A A 4 missense_variant MODERATE transcript unique_Triplet 321411226 321416474 5249 2 0.0381024957134692 RFvsST 134922827 638605184 503682358 no 246.961388327997 TraesCS5B01G175100 chr5B_321415555 chr5B 321415555 G G A A 4 synonymous_variant LOW transcript unique_Triplet 321411226 321416474 5249 2 0.0381024957134692 RFvsST 134922827 638605184 503682358 no 246.961388327997 TraesCS5B01G175200 chr5B_321416555 chr5B 321416555 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 321418071 321418622 552 1 0.181159420289855 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G175400 chr5B_321530096 chr5B 321530096 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 321526860 321527933 1074 1 0.0931098696461825 RFvsST 134922827 638605184 503682358 no 4.66219166481602 TraesCS5B01G175900 chr5B_321971206 chr5B 321971206 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 321962368 321970971 8604 1 0.0116225011622501 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G176100 chr5B_322151093 chr5B 322151093 C C G G 4 missense_variant MODERATE transcript unique_Triplet 322140632 322151368 10737 1 0.00931358852565894 RFvsST 134922827 638605184 503682358 no 250.230344620435 TraesCS5B01G176600 chr5B_322553428 chr5B 322553428 C C T T 4 missense_variant MODERATE transcript unique_Triplet 322553304 322555759 2456 2 0.0814332247557003 RFvsST 134922827 638605184 503682358 no 27.2549866716953 TraesCS5B01G176600 chr5B_322553506 chr5B 322553506 C C A A 4 missense_variant MODERATE transcript unique_Triplet 322553304 322555759 2456 2 0.0814332247557003 RFvsST 134922827 638605184 503682358 no 27.2549866716953 TraesCS5B01G176700 chr5B_322859720 chr5B 322859720 G A G A 3 missense_variant MODERATE transcript unique_Triplet 322858931 322859812 882 3 0.340136054421769 RFvsST 134922827 638605184 503682358 no 54.793043961434 TraesCS5B01G176700 chr5B_322858290 chr5B 322858290 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 322858931 322859812 882 3 0.340136054421769 RFvsST 134922827 638605184 503682358 no 54.793043961434 TraesCS5B01G176700 chr5B_322858895 chr5B 322858895 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 322858931 322859812 882 3 0.340136054421769 RFvsST 134922827 638605184 503682358 no 54.793043961434 TraesCS5B01G177200 chr5B_322923157 chr5B 322923157 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 322923238 322924046 809 1 0.123609394313968 RFvsST 134922827 638605184 503682358 no 173.162819932991 TraesCS5B01G177300 chr5B_323711077 chr5B 323711077 G A G A 3 missense_variant MODERATE transcript unique_Triplet 323702329 323712357 10029 1 0.00997108385681524 RFvsST 134922827 638605184 503682358 no 417.708818170521 TraesCS5B01G177400 chr5B_323870274 chr5B 323870274 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323860974 chr5B 323860974 G T G T 3 synonymous_variant LOW transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323870114 chr5B 323870114 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323870034 chr5B 323870034 C T C T 3 missense_variant MODERATE transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323860578 chr5B 323860578 T C T C 3 synonymous_variant LOW transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323869036 chr5B 323869036 C T C T 3 synonymous_variant LOW transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177400 chr5B_323858864 chr5B 323858864 C G C G 3 missense_variant MODERATE transcript unique_Triplet 323858201 323870048 11848 7 0.0590817015530047 RFvsST 134922827 638605184 503682358 no 14.5163445448548 TraesCS5B01G177800 chr5B_325087513 chr5B 325087513 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 325061691 325083908 22218 3 0.0135025654874426 RFvsST 134922827 638605184 503682358 no 14.8521760489905 TraesCS5B01G177800 chr5B_325086298 chr5B 325086298 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 325061691 325083908 22218 3 0.0135025654874426 RFvsST 134922827 638605184 503682358 no 14.8521760489905 TraesCS5B01G177800 chr5B_325069818 chr5B 325069818 C C T T 4 missense_variant MODERATE transcript unique_Triplet 325061691 325083908 22218 3 0.0135025654874426 RFvsST 134922827 638605184 503682358 no 14.8521760489905 TraesCS5B01G178400 chr5B_326508028 chr5B 326508028 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 326507186 326508337 1152 3 0.260416666666667 RFvsST 134922827 638605184 503682358 no 316.579541675953 TraesCS5B01G178400 chr5B_326507978 chr5B 326507978 T T C C 4 synonymous_variant LOW transcript unique_Triplet 326507186 326508337 1152 3 0.260416666666667 RFvsST 134922827 638605184 503682358 no 316.579541675953 TraesCS5B01G178400 chr5B_326507377 chr5B 326507377 C C T T 4 missense_variant MODERATE transcript unique_Triplet 326507186 326508337 1152 3 0.260416666666667 RFvsST 134922827 638605184 503682358 no 316.579541675953 TraesCS5B01G178600 chr5B_326572751 chr5B 326572751 T T C C 4 missense_variant MODERATE transcript unique_Triplet 326572489 326575603 3115 2 0.0642054574638844 RFvsST 134922827 638605184 503682358 no 187.962878389779 TraesCS5B01G178600 chr5B_326573545 chr5B 326573545 C C T T 4 synonymous_variant LOW transcript unique_Triplet 326572489 326575603 3115 2 0.0642054574638844 RFvsST 134922827 638605184 503682358 no 187.962878389779 TraesCS5B01G179300 chr5B_327088198 chr5B 327088198 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 327080214 327088293 8080 1 0.0123762376237624 RFvsST 134922827 638605184 503682358 no 59.7067145619311 TraesCS5B01G196900 chr5B_354512560 chr5B 354512560 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 354509899 354512967 3069 1 0.0325839035516455 RFvsST 134922827 638605184 503682358 no 1281.75314107363 TraesCS5B01G203300 chr5B_369618948 chr5B 369618948 A G A G 3 synonymous_variant LOW transcript unique_Triplet 369616742 369621304 4563 2 0.0438308130615823 RFvsST 134922827 638605184 503682358 no 98.5642362132014 TraesCS5B01G203300 chr5B_369618939 chr5B 369618939 C T C T 3 synonymous_variant LOW transcript unique_Triplet 369616742 369621304 4563 2 0.0438308130615823 RFvsST 134922827 638605184 503682358 no 98.5642362132014 TraesCS5B01G204900 chr5B_373216556 chr5B 373216556 T C T C 3 missense_variant MODERATE transcript unique_Triplet 373216168 373220460 4293 1 0.0232937339855579 RFvsST 134922827 638605184 503682358 no 54.7480625615717 TraesCS5B01G208800 chr5B_378816535 chr5B 378816535 T T C C 4 synonymous_variant LOW transcript unique_Triplet 378814604 378816544 1941 1 0.0515198351365276 RFvsST 134922827 638605184 503682358 no 16.6400702612463 TraesCS5B01G209100 chr5B_378851677 chr5B 378851677 C C T T 4 synonymous_variant LOW transcript non_Triplet 378851260 378853282 2023 2 0.0988630746416213 RFvsST 134922827 638605184 503682358 no 77.0092819855686 TraesCS5B01G209100 chr5B_378852824 chr5B 378852824 A A C C 4 synonymous_variant LOW transcript non_Triplet 378851260 378853282 2023 2 0.0988630746416213 RFvsST 134922827 638605184 503682358 no 77.0092819855686 TraesCS5B01G212300 chr5B_382910111 chr5B 382910111 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 382909301 382910304 1004 1 0.099601593625498 RFvsST 134922827 638605184 503682358 no 358.123855842794 TraesCS5B01G213300 chr5B_386328514 chr5B 386328514 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 386329179 386337636 8458 3 0.0354693781035706 RFvsST 134922827 638605184 503682358 no 136.991055195094 TraesCS5B01G213300 chr5B_386329864 chr5B 386329864 C C T T 4 synonymous_variant LOW transcript unique_Triplet 386329179 386337636 8458 3 0.0354693781035706 RFvsST 134922827 638605184 503682358 no 136.991055195094 TraesCS5B01G213300 chr5B_386337382 chr5B 386337382 A A G G 4 synonymous_variant LOW transcript unique_Triplet 386329179 386337636 8458 3 0.0354693781035706 RFvsST 134922827 638605184 503682358 no 136.991055195094 TraesCS5B01G213400 chr5B_386389454 chr5B 386389454 C C T T 4 missense_variant MODERATE transcript unique_Triplet 386384153 386393164 9012 1 0.0110963160230803 RFvsST 134922827 638605184 503682358 no 398.970810532303 TraesCS5B01G214400 chr5B_387174404 chr5B 387174404 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 387173738 387176452 2715 4 0.147329650092081 RFvsST 134922827 638605184 503682358 no 673.494551565129 TraesCS5B01G214400 chr5B_387174383 chr5B 387174383 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 387173738 387176452 2715 4 0.147329650092081 RFvsST 134922827 638605184 503682358 no 673.494551565129 TraesCS5B01G214400 chr5B_387176371 chr5B 387176371 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 387173738 387176452 2715 4 0.147329650092081 RFvsST 134922827 638605184 503682358 no 673.494551565129 TraesCS5B01G214400 chr5B_387174350 chr5B 387174350 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 387173738 387176452 2715 4 0.147329650092081 RFvsST 134922827 638605184 503682358 no 673.494551565129 TraesCS5B01G214500 chr5B_387367526 chr5B 387367526 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 387363938 387367437 3500 1 0.0285714285714286 RFvsST 134922827 638605184 503682358 no 80.7986229770473 TraesCS5B01G214600 chr5B_387733856 chr5B 387733856 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 387734189 387739576 5388 2 0.0371195248700817 RFvsST 134922827 638605184 503682358 no 312.695867890497 TraesCS5B01G214600 chr5B_387735686 chr5B 387735686 T C T C 3 synonymous_variant LOW transcript unique_Triplet 387734189 387739576 5388 2 0.0371195248700817 RFvsST 134922827 638605184 503682358 no 312.695867890497 TraesCS5B01G214900 chr5B_387890071 chr5B 387890071 T A T A 3 missense_variant MODERATE transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387891211 chr5B 387891211 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387887719 chr5B 387887719 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387891790 chr5B 387891790 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387886223 chr5B 387886223 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387886054 chr5B 387886054 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387890062 chr5B 387890062 G A G A 3 missense_variant MODERATE transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387890001 chr5B 387890001 G A G A 3 synonymous_variant LOW transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387886767 chr5B 387886767 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387891691 chr5B 387891691 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387886762 chr5B 387886762 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387886220 chr5B 387886220 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387890009 chr5B 387890009 G C G C 3 missense_variant MODERATE transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G214900 chr5B_387887363 chr5B 387887363 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 387889947 387890559 613 14 2.28384991843393 RFvsST 134922827 638605184 503682358 no 4.2921534707211 TraesCS5B01G215100 chr5B_387904553 chr5B 387904553 G A G A 3 missense_variant MODERATE transcript non_Triplet 387903497 387904837 1341 2 0.149142431021626 RFvsST 134922827 638605184 503682358 no 72.2423238566958 TraesCS5B01G215100 chr5B_387904695 chr5B 387904695 C T C T 3 missense_variant MODERATE transcript non_Triplet 387903497 387904837 1341 2 0.149142431021626 RFvsST 134922827 638605184 503682358 no 72.2423238566958 TraesCS5B01G215300 chr5B_388311658 chr5B 388311658 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 388311274 388312445 1172 1 0.0853242320819113 RFvsST 134922827 638605184 503682358 no 37.2607219047604 TraesCS5B01G216600 chr5B_390702171 chr5B 390702171 C G C G 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 390698759 390711960 13202 3 0.0227238297227693 RFvsST 134922827 638605184 503682358 no 60.0709283830891 TraesCS5B01G216600 chr5B_390698990 chr5B 390698990 T C T C 3 synonymous_variant LOW transcript non_Triplet 390698759 390711960 13202 3 0.0227238297227693 RFvsST 134922827 638605184 503682358 no 60.0709283830891 TraesCS5B01G216600 chr5B_390704258 chr5B 390704258 T G T G 3 synonymous_variant LOW transcript non_Triplet 390698759 390711960 13202 3 0.0227238297227693 RFvsST 134922827 638605184 503682358 no 60.0709283830891 TraesCS5B01G217200 chr5B_391301019 chr5B 391301019 G G A A 4 missense_variant MODERATE transcript non_Triplet 391299032 391303679 4648 1 0.0215146299483649 RFvsST 134922827 638605184 503682358 no 131.169591712882 TraesCS5B01G217900 chr5B_391826107 chr5B 391826107 A G A G 3 synonymous_variant LOW transcript non_Triplet 391825952 391826470 519 1 0.192678227360308 RFvsST 134922827 638605184 503682358 no 20.1495579054604 TraesCS5B01G218600 chr5B_392118848 chr5B 392118848 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 392118876 392119370 495 1 0.202020202020202 RFvsST 134922827 638605184 503682358 no 452.76278921171 TraesCS5B01G219100 chr5B_392269003 chr5B 392269003 C T C T 3 missense_variant MODERATE transcript unique_Triplet 392266074 392269791 3718 3 0.0806885422270038 RFvsST 134922827 638605184 503682358 no 618.223275284897 TraesCS5B01G219100 chr5B_392266086 chr5B 392266086 A G A G 3 synonymous_variant LOW transcript unique_Triplet 392266074 392269791 3718 3 0.0806885422270038 RFvsST 134922827 638605184 503682358 no 618.223275284897 TraesCS5B01G219100 chr5B_392269562 chr5B 392269562 G A G A 3 synonymous_variant LOW transcript unique_Triplet 392266074 392269791 3718 3 0.0806885422270038 RFvsST 134922827 638605184 503682358 no 618.223275284897 TraesCS5B01G219400 chr5B_393667686 chr5B 393667686 G A G A 3 synonymous_variant LOW transcript unique_Triplet 393667005 393670559 3555 1 0.0281293952180028 RFvsST 134922827 638605184 503682358 no 61.0786549813553 TraesCS5B01G219600 chr5B_393835507 chr5B 393835507 T C T C 3 synonymous_variant LOW transcript unique_Triplet 393831023 393835966 4944 1 0.0202265372168285 RFvsST 134922827 638605184 503682358 no 33.779026071963 TraesCS5B01G219800 chr5B_394010496 chr5B 394010496 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 394013025 394018631 5607 1 0.0178348492955235 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G221400 chr5B_395918176 chr5B 395918176 G A G A 3 missense_variant MODERATE transcript unique_Triplet 395917417 395920706 3290 1 0.0303951367781155 RFvsST 134922827 638605184 503682358 no 40.2554090228538 TraesCS5B01G221700 chr5B_396163675 chr5B 396163675 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 396160372 396164338 3967 3 0.0756238971514999 RFvsST 134922827 638605184 503682358 no 451.974674793925 TraesCS5B01G221700 chr5B_396164385 chr5B 396164385 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 396160372 396164338 3967 3 0.0756238971514999 RFvsST 134922827 638605184 503682358 no 451.974674793925 TraesCS5B01G221700 chr5B_396160349 chr5B 396160349 T T A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 396160372 396164338 3967 3 0.0756238971514999 RFvsST 134922827 638605184 503682358 no 451.974674793925 TraesCS5B01G222400 chr5B_397435025 chr5B 397435025 C T C T 3 missense_variant MODERATE transcript unique_Triplet 397434376 397435611 1236 5 0.40453074433657 RFvsST 134922827 638605184 503682358 no 19.5783830042464 TraesCS5B01G222400 chr5B_397434869 chr5B 397434869 G A G A 3 missense_variant MODERATE transcript unique_Triplet 397434376 397435611 1236 5 0.40453074433657 RFvsST 134922827 638605184 503682358 no 19.5783830042464 TraesCS5B01G222400 chr5B_397435474 chr5B 397435474 G C G C 3 missense_variant MODERATE transcript unique_Triplet 397434376 397435611 1236 5 0.40453074433657 RFvsST 134922827 638605184 503682358 no 19.5783830042464 TraesCS5B01G222400 chr5B_397434548 chr5B 397434548 C T C T 3 missense_variant MODERATE transcript unique_Triplet 397434376 397435611 1236 5 0.40453074433657 RFvsST 134922827 638605184 503682358 no 19.5783830042464 TraesCS5B01G222400 chr5B_397434309 chr5B 397434309 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 397434376 397435611 1236 5 0.40453074433657 RFvsST 134922827 638605184 503682358 no 19.5783830042464 TraesCS5B01G222700 chr5B_397834454 chr5B 397834454 T A T A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 397828657 397833731 5075 1 0.0197044334975369 RFvsST 134922827 638605184 503682358 no 26.1984818928722 TraesCS5B01G222800 chr5B_397836266 chr5B 397836266 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 397834638 397836141 1504 2 0.132978723404255 RFvsST 134922827 638605184 503682358 no 947.273535125171 TraesCS5B01G222800 chr5B_397838139 chr5B 397838139 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 397834638 397836141 1504 2 0.132978723404255 RFvsST 134922827 638605184 503682358 no 947.273535125171 TraesCS5B01G222900 chr5B_397838133 chr5B 397838133 C T C T 3 missense_variant MODERATE transcript unique_Triplet 397837916 397838137 222 3 1.35135135135135 RFvsST 134922827 638605184 503682358 no 102.213842479083 TraesCS5B01G222900 chr5B_397838009 chr5B 397838009 C T C T 3 synonymous_variant LOW transcript unique_Triplet 397837916 397838137 222 3 1.35135135135135 RFvsST 134922827 638605184 503682358 no 102.213842479083 TraesCS5B01G222900 chr5B_397837951 chr5B 397837951 G A G A 3 missense_variant MODERATE transcript unique_Triplet 397837916 397838137 222 3 1.35135135135135 RFvsST 134922827 638605184 503682358 no 102.213842479083 TraesCS5B01G223700 chr5B_398346150 chr5B 398346150 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 398346143 398350041 3899 3 0.0769428058476532 RFvsST 134922827 638605184 503682358 no 311.27787514745 TraesCS5B01G223700 chr5B_398346679 chr5B 398346679 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 398346143 398350041 3899 3 0.0769428058476532 RFvsST 134922827 638605184 503682358 no 311.27787514745 TraesCS5B01G223700 chr5B_398348001 chr5B 398348001 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 398346143 398350041 3899 3 0.0769428058476532 RFvsST 134922827 638605184 503682358 no 311.27787514745 TraesCS5B01G224700 chr5B_400450163 chr5B 400450163 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224700 chr5B_400450142 chr5B 400450142 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224700 chr5B_400449944 chr5B 400449944 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224700 chr5B_400447734 chr5B 400447734 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224700 chr5B_400447793 chr5B 400447793 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224700 chr5B_400450189 chr5B 400450189 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 400440979 400445671 4693 6 0.127849989345834 RFvsST 134922827 638605184 503682358 no 2.11065244505416 TraesCS5B01G224800 chr5B_400449211 chr5B 400449211 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 400449314 400451169 1856 3 0.161637931034483 RFvsST 134922827 638605184 503682358 no 212.679691005872 TraesCS5B01G224800 chr5B_400449285 chr5B 400449285 G T G T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 400449314 400451169 1856 3 0.161637931034483 RFvsST 134922827 638605184 503682358 no 212.679691005872 TraesCS5B01G224800 chr5B_400449734 chr5B 400449734 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 400449314 400451169 1856 3 0.161637931034483 RFvsST 134922827 638605184 503682358 no 212.679691005872 TraesCS5B01G224900 chr5B_400523076 chr5B 400523076 T C T C 3 synonymous_variant LOW transcript non_Triplet 400521789 400523545 1757 3 0.170745589072282 RFvsST 134922827 638605184 503682358 no 100.251837982922 TraesCS5B01G224900 chr5B_400523106 chr5B 400523106 G A G A 3 synonymous_variant LOW transcript non_Triplet 400521789 400523545 1757 3 0.170745589072282 RFvsST 134922827 638605184 503682358 no 100.251837982922 TraesCS5B01G224900 chr5B_400523333 chr5B 400523333 A G A G 3 missense_variant MODERATE transcript non_Triplet 400521789 400523545 1757 3 0.170745589072282 RFvsST 134922827 638605184 503682358 no 100.251837982922 TraesCS5B01G225100 chr5B_400563933 chr5B 400563933 C C T T 4 missense_variant MODERATE transcript non_Triplet 400562739 400566221 3483 3 0.0861326442721792 RFvsST 134922827 638605184 503682358 no 143.51252674872 TraesCS5B01G225100 chr5B_400566277 chr5B 400566277 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 400562739 400566221 3483 3 0.0861326442721792 RFvsST 134922827 638605184 503682358 no 143.51252674872 TraesCS5B01G225100 chr5B_400564210 chr5B 400564210 C T C T 3 synonymous_variant LOW transcript non_Triplet 400562739 400566221 3483 3 0.0861326442721792 RFvsST 134922827 638605184 503682358 no 143.51252674872 TraesCS5B01G225200 chr5B_400670713 chr5B 400670713 A G A G 3 synonymous_variant LOW transcript unique_Triplet 400666717 400671024 4308 2 0.0464252553389044 RFvsST 134922827 638605184 503682358 no 43.9954770146842 TraesCS5B01G225200 chr5B_400666980 chr5B 400666980 C A C A 3 synonymous_variant LOW transcript unique_Triplet 400666717 400671024 4308 2 0.0464252553389044 RFvsST 134922827 638605184 503682358 no 43.9954770146842 TraesCS5B01G225500 chr5B_401011455 chr5B 401011455 G G C C 4 missense_variant MODERATE transcript unique_Triplet 401009164 401011674 2511 2 0.0796495420151334 RFvsST 134922827 638605184 503682358 no 115.644579443728 TraesCS5B01G225500 chr5B_401011156 chr5B 401011156 A A G G 4 synonymous_variant LOW transcript unique_Triplet 401009164 401011674 2511 2 0.0796495420151334 RFvsST 134922827 638605184 503682358 no 115.644579443728 TraesCS5B01G225700 chr5B_401668182 chr5B 401668182 A A G G 4 missense_variant MODERATE transcript unique_Triplet 401667135 401668307 1173 1 0.0852514919011083 RFvsST 134922827 638605184 503682358 no 157.266797884136 TraesCS5B01G226100 chr5B_402755584 chr5B 402755584 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 402750477 402751661 1185 1 0.0843881856540084 RFvsST 134922827 638605184 503682358 no 5.9192814739558 TraesCS5B01G226200 chr5B_402843611 chr5B 402843611 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 402844516 402845525 1010 3 0.297029702970297 RFvsST 134922827 638605184 503682358 no 72.3629951707838 TraesCS5B01G226200 chr5B_402848525 chr5B 402848525 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 402844516 402845525 1010 3 0.297029702970297 RFvsST 134922827 638605184 503682358 no 72.3629951707838 TraesCS5B01G226200 chr5B_402844553 chr5B 402844553 C C G G 4 missense_variant MODERATE transcript non_Triplet 402844516 402845525 1010 3 0.297029702970297 RFvsST 134922827 638605184 503682358 no 72.3629951707838 TraesCS5B01G226300 chr5B_403182590 chr5B 403182590 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 403182720 403190143 7424 1 0.0134698275862069 RFvsST 134922827 638605184 503682358 no 1372.31473798016 TraesCS5B01G226500 chr5B_403543253 chr5B 403543253 G G C C 4 synonymous_variant LOW transcript unique_Triplet 403542873 403547736 4864 5 0.102796052631579 RFvsST 134922827 638605184 503682358 no 2182.50677481081 TraesCS5B01G226500 chr5B_403547912 chr5B 403547912 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 403542873 403547736 4864 5 0.102796052631579 RFvsST 134922827 638605184 503682358 no 2182.50677481081 TraesCS5B01G226500 chr5B_403547805 chr5B 403547805 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 403542873 403547736 4864 5 0.102796052631579 RFvsST 134922827 638605184 503682358 no 2182.50677481081 TraesCS5B01G226500 chr5B_403543371 chr5B 403543371 G G T T 4 missense_variant MODERATE transcript unique_Triplet 403542873 403547736 4864 5 0.102796052631579 RFvsST 134922827 638605184 503682358 no 2182.50677481081 TraesCS5B01G226500 chr5B_403543940 chr5B 403543940 A A G G 4 synonymous_variant LOW transcript unique_Triplet 403542873 403547736 4864 5 0.102796052631579 RFvsST 134922827 638605184 503682358 no 2182.50677481081 TraesCS5B01G226600 chr5B_403696614 chr5B 403696614 C C T T 4 synonymous_variant LOW transcript unique_Triplet 403696344 403697750 1407 1 0.0710732054015636 RFvsST 134922827 638605184 503682358 no 13.7731145030941 TraesCS5B01G226900 chr5B_403712299 chr5B 403712299 T T C C 4 synonymous_variant LOW transcript unique_Triplet 403711284 403715478 4195 1 0.0238379022646007 RFvsST 134922827 638605184 503682358 no 31.9920360121377 TraesCS5B01G227200 chr5B_403779997 chr5B 403779997 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 403780013 403784769 4757 1 0.0210216523018709 RFvsST 134922827 638605184 503682358 no 393.5644793281 TraesCS5B01G227400 chr5B_403855630 chr5B 403855630 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 403855456 403856624 1169 3 0.256629597946963 RFvsST 134922827 638605184 503682358 no 129.772003203767 TraesCS5B01G227400 chr5B_403855748 chr5B 403855748 G G A A 4 missense_variant MODERATE transcript unique_Triplet 403855456 403856624 1169 3 0.256629597946963 RFvsST 134922827 638605184 503682358 no 129.772003203767 TraesCS5B01G227400 chr5B_403855544 chr5B 403855544 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 403855456 403856624 1169 3 0.256629597946963 RFvsST 134922827 638605184 503682358 no 129.772003203767 TraesCS5B01G232000 chr5B_409056951 chr5B 409056951 G T G T 3 missense_variant MODERATE transcript unique_Triplet 409055473 409058641 3169 2 0.0631113916061849 RFvsST 134922827 638605184 503682358 no 90.6725675166359 TraesCS5B01G232000 chr5B_409058483 chr5B 409058483 A G A G 3 missense_variant MODERATE transcript unique_Triplet 409055473 409058641 3169 2 0.0631113916061849 RFvsST 134922827 638605184 503682358 no 90.6725675166359 TraesCS5B01G232400 chr5B_410532740 chr5B 410532740 G G T T 4 synonymous_variant LOW transcript unique_Triplet 410531436 410535430 3995 5 0.125156445556946 RFvsST 134922827 638605184 503682358 no 135.287752029486 TraesCS5B01G232400 chr5B_410532997 chr5B 410532997 G A G A 3 synonymous_variant LOW transcript unique_Triplet 410531436 410535430 3995 5 0.125156445556946 RFvsST 134922827 638605184 503682358 no 135.287752029486 TraesCS5B01G232400 chr5B_410535516 chr5B 410535516 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 410531436 410535430 3995 5 0.125156445556946 RFvsST 134922827 638605184 503682358 no 135.287752029486 TraesCS5B01G232400 chr5B_410535460 chr5B 410535460 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 410531436 410535430 3995 5 0.125156445556946 RFvsST 134922827 638605184 503682358 no 135.287752029486 TraesCS5B01G232400 chr5B_410531616 chr5B 410531616 T C T C 3 synonymous_variant LOW transcript unique_Triplet 410531436 410535430 3995 5 0.125156445556946 RFvsST 134922827 638605184 503682358 no 135.287752029486 TraesCS5B01G232900 chr5B_410852493 chr5B 410852493 G G A A 4 synonymous_variant LOW transcript unique_Triplet 410848078 410853657 5580 1 0.017921146953405 RFvsST 134922827 638605184 503682358 no 103.779091663086 TraesCS5B01G234600 chr5B_412681632 chr5B 412681632 C A C A 3 missense_variant MODERATE transcript unique_Triplet 412681505 412684700 3196 1 0.0312891113892365 RFvsST 134922827 638605184 503682358 no 165.532272171617 TraesCS5B01G234700 chr5B_412687412 chr5B 412687412 C T C T 3 missense_variant MODERATE transcript unique_Triplet 412686112 412690306 4195 2 0.0476758045292014 RFvsST 134922827 638605184 503682358 no 274.810737734404 TraesCS5B01G234700 chr5B_412688016 chr5B 412688016 G T G T 3 synonymous_variant LOW transcript unique_Triplet 412686112 412690306 4195 2 0.0476758045292014 RFvsST 134922827 638605184 503682358 no 274.810737734404 TraesCS5B01G235300 chr5B_415649292 chr5B 415649292 A G A G 3 missense_variant MODERATE transcript unique_Triplet 415648253 415649824 1572 5 0.318066157760814 RFvsST 134922827 638605184 503682358 no 244.093667916739 TraesCS5B01G235300 chr5B_415649116 chr5B 415649116 G A G A 3 synonymous_variant LOW transcript unique_Triplet 415648253 415649824 1572 5 0.318066157760814 RFvsST 134922827 638605184 503682358 no 244.093667916739 TraesCS5B01G235300 chr5B_415649300 chr5B 415649300 T C T C 3 missense_variant MODERATE transcript unique_Triplet 415648253 415649824 1572 5 0.318066157760814 RFvsST 134922827 638605184 503682358 no 244.093667916739 TraesCS5B01G235300 chr5B_415649515 chr5B 415649515 A G A G 3 synonymous_variant LOW transcript unique_Triplet 415648253 415649824 1572 5 0.318066157760814 RFvsST 134922827 638605184 503682358 no 244.093667916739 TraesCS5B01G235300 chr5B_415648849 chr5B 415648849 G A G A 3 synonymous_variant LOW transcript unique_Triplet 415648253 415649824 1572 5 0.318066157760814 RFvsST 134922827 638605184 503682358 no 244.093667916739 TraesCS5B01G242000 chr5B_421669403 chr5B 421669403 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 421668345 421669426 1082 3 0.277264325323475 RFvsST 134922827 638605184 503682358 no 759.810997019826 TraesCS5B01G242000 chr5B_421669535 chr5B 421669535 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 421668345 421669426 1082 3 0.277264325323475 RFvsST 134922827 638605184 503682358 no 759.810997019826 TraesCS5B01G242000 chr5B_421668516 chr5B 421668516 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 421668345 421669426 1082 3 0.277264325323475 RFvsST 134922827 638605184 503682358 no 759.810997019826 TraesCS5B01G243700 chr5B_424335769 chr5B 424335769 A A G G 4 synonymous_variant LOW transcript unique_Triplet 424332561 424335850 3290 2 0.060790273556231 RFvsST 134922827 638605184 503682358 no 216.412841215565 TraesCS5B01G243700 chr5B_424335723 chr5B 424335723 C C G G 4 missense_variant MODERATE transcript unique_Triplet 424332561 424335850 3290 2 0.060790273556231 RFvsST 134922827 638605184 503682358 no 216.412841215565 TraesCS5B01G245100 chr5B_426512079 chr5B 426512079 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 426512226 426520274 8049 2 0.0248478071810163 RFvsST 134922827 638605184 503682358 no 230.096656772423 TraesCS5B01G245100 chr5B_426512193 chr5B 426512193 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 426512226 426520274 8049 2 0.0248478071810163 RFvsST 134922827 638605184 503682358 no 230.096656772423 TraesCS5B01G246400 chr5B_427929508 chr5B 427929508 T T C C 4 synonymous_variant LOW transcript unique_Triplet 427929415 427940203 10789 5 0.0463434980072296 RFvsST 134922827 638605184 503682358 no 28.6569007992868 TraesCS5B01G246400 chr5B_427929154 chr5B 427929154 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 427929415 427940203 10789 5 0.0463434980072296 RFvsST 134922827 638605184 503682358 no 28.6569007992868 TraesCS5B01G246400 chr5B_427929013 chr5B 427929013 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 427929415 427940203 10789 5 0.0463434980072296 RFvsST 134922827 638605184 503682358 no 28.6569007992868 TraesCS5B01G246400 chr5B_427929014 chr5B 427929014 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 427929415 427940203 10789 5 0.0463434980072296 RFvsST 134922827 638605184 503682358 no 28.6569007992868 TraesCS5B01G246400 chr5B_427929390 chr5B 427929390 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 427929415 427940203 10789 5 0.0463434980072296 RFvsST 134922827 638605184 503682358 no 28.6569007992868 TraesCS5B01G246600 chr5B_428127678 chr5B 428127678 G G A A 4 missense_variant MODERATE transcript unique_Triplet 428127309 428131754 4446 1 0.0224921277552857 RFvsST 134922827 638605184 503682358 no 1065.98076527192 TraesCS5B01G248100 chr5B_430466407 chr5B 430466407 G G C C 4 synonymous_variant LOW transcript unique_Triplet 430466119 430471979 5861 3 0.0511858044702269 RFvsST 134922827 638605184 503682358 no 135.369247106411 TraesCS5B01G248100 chr5B_430469216 chr5B 430469216 A A G G 4 synonymous_variant LOW transcript unique_Triplet 430466119 430471979 5861 3 0.0511858044702269 RFvsST 134922827 638605184 503682358 no 135.369247106411 TraesCS5B01G248100 chr5B_430467213 chr5B 430467213 G G A A 4 synonymous_variant LOW transcript unique_Triplet 430466119 430471979 5861 3 0.0511858044702269 RFvsST 134922827 638605184 503682358 no 135.369247106411 TraesCS5B01G249000 chr5B_431078539 chr5B 431078539 C T C T 3 missense_variant MODERATE transcript unique_Triplet 431074368 431078699 4332 1 0.023084025854109 RFvsST 134922827 638605184 503682358 no 134.823626113626 TraesCS5B01G249300 chr5B_431800218 chr5B 431800218 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431799960 chr5B 431799960 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798928 chr5B 431798928 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798421 chr5B 431798421 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431800194 chr5B 431800194 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798446 chr5B 431798446 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798368 chr5B 431798368 A T A T 3 missense_variant MODERATE transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798883 chr5B 431798883 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798187 chr5B 431798187 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249300 chr5B_431798924 chr5B 431798924 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 431798094 431800046 1953 10 0.512032770097286 RFvsST 134922827 638605184 503682358 no 345.920296415069 TraesCS5B01G249500 chr5B_432156387 chr5B 432156387 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 432149576 432156255 6680 3 0.0449101796407186 RFvsST 134922827 638605184 503682358 no 45.882832526777 TraesCS5B01G249500 chr5B_432149515 chr5B 432149515 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 432149576 432156255 6680 3 0.0449101796407186 RFvsST 134922827 638605184 503682358 no 45.882832526777 TraesCS5B01G249500 chr5B_432155448 chr5B 432155448 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 432149576 432156255 6680 3 0.0449101796407186 RFvsST 134922827 638605184 503682358 no 45.882832526777 TraesCS5B01G251000 chr5B_433526893 chr5B 433526893 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 433526159 433528862 2704 1 0.0369822485207101 RFvsST 134922827 638605184 503682358 no 16.9767730937284 TraesCS5B01G251300 chr5B_433895751 chr5B 433895751 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 433893369 433894663 1295 1 0.0772200772200772 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G252100 chr5B_434701354 chr5B 434701354 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 434698586 434704847 6262 2 0.0319386777387416 RFvsST 134922827 638605184 503682358 no 469.332720380096 TraesCS5B01G252100 chr5B_434699313 chr5B 434699313 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 434698586 434704847 6262 2 0.0319386777387416 RFvsST 134922827 638605184 503682358 no 469.332720380096 TraesCS5B01G255100 chr5B_437802057 chr5B 437802057 A A G G 4 missense_variant MODERATE transcript non_Triplet 437800053 437803223 3171 2 0.0630715862503942 RFvsST 134922827 638605184 503682358 no 240.615202756771 TraesCS5B01G255100 chr5B_437802180 chr5B 437802180 G G T T 4 missense_variant MODERATE transcript non_Triplet 437800053 437803223 3171 2 0.0630715862503942 RFvsST 134922827 638605184 503682358 no 240.615202756771 TraesCS5B01G255700 chr5B_438221031 chr5B 438221031 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 438217328 438221352 4025 4 0.0993788819875776 RFvsST 134922827 638605184 503682358 no 232.382455287822 TraesCS5B01G255700 chr5B_438219472 chr5B 438219472 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 438217328 438221352 4025 4 0.0993788819875776 RFvsST 134922827 638605184 503682358 no 232.382455287822 TraesCS5B01G255700 chr5B_438220133 chr5B 438220133 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 438217328 438221352 4025 4 0.0993788819875776 RFvsST 134922827 638605184 503682358 no 232.382455287822 TraesCS5B01G255700 chr5B_438219314 chr5B 438219314 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 438217328 438221352 4025 4 0.0993788819875776 RFvsST 134922827 638605184 503682358 no 232.382455287822 TraesCS5B01G256200 chr5B_439057203 chr5B 439057203 G G A A 4 missense_variant MODERATE transcript unique_Triplet 439056540 439059934 3395 1 0.0294550810014728 RFvsST 134922827 638605184 503682358 no 147.666923388082 TraesCS5B01G256400 chr5B_439228286 chr5B 439228286 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 439227576 439228007 432 1 0.231481481481481 RFvsST 134922827 638605184 503682358 no 15288.7251972448 TraesCS5B01G257300 chr5B_439723598 chr5B 439723598 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 439723292 439727593 4302 4 0.0929800092980009 RFvsST 134922827 638605184 503682358 no 282.423909374771 TraesCS5B01G257300 chr5B_439725297 chr5B 439725297 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 439723292 439727593 4302 4 0.0929800092980009 RFvsST 134922827 638605184 503682358 no 282.423909374771 TraesCS5B01G257300 chr5B_439726151 chr5B 439726151 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 439723292 439727593 4302 4 0.0929800092980009 RFvsST 134922827 638605184 503682358 no 282.423909374771 TraesCS5B01G257300 chr5B_439725143 chr5B 439725143 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 439723292 439727593 4302 4 0.0929800092980009 RFvsST 134922827 638605184 503682358 no 282.423909374771 TraesCS5B01G257400 chr5B_439880187 chr5B 439880187 T T G G 4 synonymous_variant LOW transcript unique_Triplet 439879192 439880940 1749 3 0.171526586620926 RFvsST 134922827 638605184 503682358 no 255.65896393221 TraesCS5B01G257400 chr5B_439880193 chr5B 439880193 G G C C 4 synonymous_variant LOW transcript unique_Triplet 439879192 439880940 1749 3 0.171526586620926 RFvsST 134922827 638605184 503682358 no 255.65896393221 TraesCS5B01G257400 chr5B_439880196 chr5B 439880196 G G T T 4 synonymous_variant LOW transcript unique_Triplet 439879192 439880940 1749 3 0.171526586620926 RFvsST 134922827 638605184 503682358 no 255.65896393221 TraesCS5B01G257900 chr5B_440246374 chr5B 440246374 A A G G 4 missense_variant MODERATE transcript unique_Triplet 440237577 440247359 9783 1 0.0102218133496882 RFvsST 134922827 638605184 503682358 no 71.8633659319485 TraesCS5B01G260000 chr5B_442414488 chr5B 442414488 G A G A 3 synonymous_variant LOW transcript unique_Triplet 442413354 442414679 1326 1 0.0754147812971342 RFvsST 134922827 638605184 503682358 no 287.320277363095 TraesCS5B01G269300 chr5B_455272248 chr5B 455272248 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 455268865 455269327 463 1 0.215982721382289 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G270000 chr5B_455734850 chr5B 455734850 T C T C 3 missense_variant MODERATE transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G270000 chr5B_455735483 chr5B 455735483 G A G A 3 missense_variant MODERATE transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G270000 chr5B_455738675 chr5B 455738675 A C A C 3 missense_variant MODERATE transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G270000 chr5B_455737991 chr5B 455737991 C A C A 3 missense_variant MODERATE transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G270000 chr5B_455738909 chr5B 455738909 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G270000 chr5B_455738745 chr5B 455738745 A T A T 3 missense_variant MODERATE transcript unique_Triplet 455733295 455738893 5599 6 0.107161993213074 RFvsST 134922827 638605184 503682358 no 269.442002748747 TraesCS5B01G271300 chr5B_456983020 chr5B 456983020 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 456977817 456982972 5156 5 0.0969743987587277 RFvsST 134922827 638605184 503682358 no 59.5368371224856 TraesCS5B01G271300 chr5B_456977717 chr5B 456977717 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 456977817 456982972 5156 5 0.0969743987587277 RFvsST 134922827 638605184 503682358 no 59.5368371224856 TraesCS5B01G271300 chr5B_456979726 chr5B 456979726 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 456977817 456982972 5156 5 0.0969743987587277 RFvsST 134922827 638605184 503682358 no 59.5368371224856 TraesCS5B01G271300 chr5B_456980455 chr5B 456980455 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 456977817 456982972 5156 5 0.0969743987587277 RFvsST 134922827 638605184 503682358 no 59.5368371224856 TraesCS5B01G271300 chr5B_456980745 chr5B 456980745 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 456977817 456982972 5156 5 0.0969743987587277 RFvsST 134922827 638605184 503682358 no 59.5368371224856 TraesCS5B01G271700 chr5B_457130114 chr5B 457130114 G G T T 4 missense_variant MODERATE transcript unique_Triplet 457128329 457130545 2217 1 0.04510599909788 RFvsST 134922827 638605184 503682358 no 41.1732874283165 TraesCS5B01G271800 chr5B_457132518 chr5B 457132518 G G A A 4 synonymous_variant LOW transcript unique_Triplet 457131563 457134495 2933 2 0.0681895669962496 RFvsST 134922827 638605184 503682358 no 258.777842464853 TraesCS5B01G271800 chr5B_457134401 chr5B 457134401 A A G G 4 missense_variant MODERATE transcript unique_Triplet 457131563 457134495 2933 2 0.0681895669962496 RFvsST 134922827 638605184 503682358 no 258.777842464853 TraesCS5B01G271900 chr5B_457342490 chr5B 457342490 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 457339081 457339788 708 1 0.141242937853107 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G272000 chr5B_457342612 chr5B 457342612 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 457342576 457346959 4384 1 0.0228102189781022 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G272600 chr5B_458145992 chr5B 458145992 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 458144730 458145998 1269 2 0.157604412923562 RFvsST 134922827 638605184 503682358 no 202.159160533371 TraesCS5B01G272600 chr5B_458145713 chr5B 458145713 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 458144730 458145998 1269 2 0.157604412923562 RFvsST 134922827 638605184 503682358 no 202.159160533371 TraesCS5B01G272700 chr5B_458147739 chr5B 458147739 G G A A 4 missense_variant MODERATE transcript unique_Triplet 458147111 458150986 3876 4 0.103199174406605 RFvsST 134922827 638605184 503682358 no 241.508608362648 TraesCS5B01G272700 chr5B_458150711 chr5B 458150711 G G A A 4 synonymous_variant LOW transcript unique_Triplet 458147111 458150986 3876 4 0.103199174406605 RFvsST 134922827 638605184 503682358 no 241.508608362648 TraesCS5B01G272700 chr5B_458147286 chr5B 458147286 C C T T 4 missense_variant MODERATE transcript unique_Triplet 458147111 458150986 3876 4 0.103199174406605 RFvsST 134922827 638605184 503682358 no 241.508608362648 TraesCS5B01G272700 chr5B_458150870 chr5B 458150870 T T C C 4 synonymous_variant LOW transcript unique_Triplet 458147111 458150986 3876 4 0.103199174406605 RFvsST 134922827 638605184 503682358 no 241.508608362648 TraesCS5B01G278500 chr5B_464322698 chr5B 464322698 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 464320707 464322592 1886 3 0.159066808059385 RFvsST 134922827 638605184 503682358 no 84.0392382868188 TraesCS5B01G278500 chr5B_464322642 chr5B 464322642 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 464320707 464322592 1886 3 0.159066808059385 RFvsST 134922827 638605184 503682358 no 84.0392382868188 TraesCS5B01G278500 chr5B_464322699 chr5B 464322699 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 464320707 464322592 1886 3 0.159066808059385 RFvsST 134922827 638605184 503682358 no 84.0392382868188 TraesCS5B01G278600 chr5B_464327462 chr5B 464327462 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278600 chr5B_464329489 chr5B 464329489 A A G G 4 synonymous_variant LOW transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278600 chr5B_464327457 chr5B 464327457 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278600 chr5B_464327601 chr5B 464327601 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278600 chr5B_464327627 chr5B 464327627 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278600 chr5B_464327539 chr5B 464327539 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 464327436 464329701 2266 6 0.264783759929391 RFvsST 134922827 638605184 503682358 no 189.867022843221 TraesCS5B01G278700 chr5B_464364590 chr5B 464364590 T T G G 4 synonymous_variant LOW transcript non_Triplet 464364270 464365800 1531 5 0.326583932070542 RFvsST 134922827 638605184 503682358 no 26.0061170255157 TraesCS5B01G278700 chr5B_464364539 chr5B 464364539 A A T T 4 synonymous_variant LOW transcript non_Triplet 464364270 464365800 1531 5 0.326583932070542 RFvsST 134922827 638605184 503682358 no 26.0061170255157 TraesCS5B01G278700 chr5B_464364680 chr5B 464364680 T T G G 4 synonymous_variant LOW transcript non_Triplet 464364270 464365800 1531 5 0.326583932070542 RFvsST 134922827 638605184 503682358 no 26.0061170255157 TraesCS5B01G278700 chr5B_464364254 chr5B 464364254 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 464364270 464365800 1531 5 0.326583932070542 RFvsST 134922827 638605184 503682358 no 26.0061170255157 TraesCS5B01G278700 chr5B_464364371 chr5B 464364371 C T C T 3 missense_variant MODERATE transcript non_Triplet 464364270 464365800 1531 5 0.326583932070542 RFvsST 134922827 638605184 503682358 no 26.0061170255157 TraesCS5B01G278800 chr5B_464588156 chr5B 464588156 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 464588063 464590394 2332 1 0.0428816466552316 RFvsST 134922827 638605184 503682358 no 108.440179676273 TraesCS5B01G279900 chr5B_465825622 chr5B 465825622 G A G A 3 missense_variant MODERATE transcript unique_Triplet 465823984 465825636 1653 2 0.120992135511192 RFvsST 134922827 638605184 503682358 no 169.149017766235 TraesCS5B01G279900 chr5B_465824050 chr5B 465824050 A A G G 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 465823984 465825636 1653 2 0.120992135511192 RFvsST 134922827 638605184 503682358 no 169.149017766235 TraesCS5B01G280000 chr5B_465834056 chr5B 465834056 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 465834095 465836964 2870 1 0.0348432055749129 RFvsST 134922827 638605184 503682358 no 101.755876465696 TraesCS5B01G280100 chr5B_466000074 chr5B 466000074 G A G A 3 missense_variant MODERATE transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_466005465 chr5B 466005465 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_465999682 chr5B 465999682 A G A G 3 synonymous_variant LOW transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_466000178 chr5B 466000178 A C A C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_465995605 chr5B 465995605 C T C T 3 synonymous_variant LOW transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_466000036 chr5B 466000036 T C T C 3 synonymous_variant LOW transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280100 chr5B_466005439 chr5B 466005439 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 465994704 466000893 6190 7 0.113085621970921 RFvsST 134922827 638605184 503682358 no 94.6161201581263 TraesCS5B01G280300 chr5B_466006228 chr5B 466006228 C C T T 4 missense_variant MODERATE transcript non_Triplet 466005990 466008029 2040 1 0.0490196078431373 RFvsST 134922827 638605184 503682358 no 41.6216938795044 TraesCS5B01G280500 chr5B_466172922 chr5B 466172922 A G A G 3 synonymous_variant LOW transcript non_Triplet 466171669 466174493 2825 5 0.176991150442478 RFvsST 134922827 638605184 503682358 no 188.003125112396 TraesCS5B01G280500 chr5B_466174035 chr5B 466174035 A G A G 3 synonymous_variant LOW transcript non_Triplet 466171669 466174493 2825 5 0.176991150442478 RFvsST 134922827 638605184 503682358 no 188.003125112396 TraesCS5B01G280500 chr5B_466172014 chr5B 466172014 T C T C 3 synonymous_variant LOW transcript non_Triplet 466171669 466174493 2825 5 0.176991150442478 RFvsST 134922827 638605184 503682358 no 188.003125112396 TraesCS5B01G280500 chr5B_466171778 chr5B 466171778 G G A A 4 missense_variant MODERATE transcript non_Triplet 466171669 466174493 2825 5 0.176991150442478 RFvsST 134922827 638605184 503682358 no 188.003125112396 TraesCS5B01G280500 chr5B_466172715 chr5B 466172715 G A G A 3 synonymous_variant LOW transcript non_Triplet 466171669 466174493 2825 5 0.176991150442478 RFvsST 134922827 638605184 503682358 no 188.003125112396 TraesCS5B01G280900 chr5B_466530508 chr5B 466530508 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 466525606 466525812 207 1 0.483091787439614 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G281700 chr5B_466780571 chr5B 466780571 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 466778713 466781665 2953 2 0.0677277345072807 RFvsST 134922827 638605184 503682358 no 159.122100491143 TraesCS5B01G281700 chr5B_466778916 chr5B 466778916 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 466778713 466781665 2953 2 0.0677277345072807 RFvsST 134922827 638605184 503682358 no 159.122100491143 TraesCS5B01G281800 chr5B_466778057 chr5B 466778057 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 466781664 466785352 3689 1 0.0271076172404446 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G282900 chr5B_467513104 chr5B 467513104 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 467511358 467515437 4080 1 0.0245098039215686 RFvsST 134922827 638605184 503682358 no 183.100713662088 TraesCS5B01G283000 chr5B_467949702 chr5B 467949702 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 467947280 467948845 1566 1 0.0638569604086845 RFvsST 134922827 638605184 503682358 no 16.7475787449011 TraesCS5B01G283400 chr5B_469101323 chr5B 469101323 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469101363 469104324 2962 1 0.0337609723160027 RFvsST 134922827 638605184 503682358 no 149.472604332783 TraesCS5B01G283900 chr5B_469826701 chr5B 469826701 G A G A 3 missense_variant MODERATE transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G283900 chr5B_469827606 chr5B 469827606 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G283900 chr5B_469829286 chr5B 469829286 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G283900 chr5B_469827456 chr5B 469827456 C T C T 3 synonymous_variant LOW transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G283900 chr5B_469829199 chr5B 469829199 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G283900 chr5B_469829287 chr5B 469829287 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469821041 469827717 6677 6 0.0898607158903699 RFvsST 134922827 638605184 503682358 no 77.6112667616151 TraesCS5B01G284000 chr5B_469830459 chr5B 469830459 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284000 chr5B_469830068 chr5B 469830068 T G T G 3 synonymous_variant LOW transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284000 chr5B_469830423 chr5B 469830423 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284000 chr5B_469830345 chr5B 469830345 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284000 chr5B_469830282 chr5B 469830282 T C T C 3 synonymous_variant LOW transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284000 chr5B_469831812 chr5B 469831812 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 469829337 469833269 3933 6 0.15255530129672 RFvsST 134922827 638605184 503682358 no 180.625229251319 TraesCS5B01G284500 chr5B_470205625 chr5B 470205625 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205231 chr5B 470205231 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470210406 chr5B 470210406 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205277 chr5B 470205277 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470210397 chr5B 470210397 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205452 chr5B 470205452 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205514 chr5B 470205514 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470209752 chr5B 470209752 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205378 chr5B 470205378 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205565 chr5B 470205565 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470210883 chr5B 470210883 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470208232 chr5B 470208232 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470205230 chr5B 470205230 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284500 chr5B_470210720 chr5B 470210720 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 470205499 470210785 5287 14 0.264800453943635 RFvsST 134922827 638605184 503682358 no 54.2858404058302 TraesCS5B01G284600 chr5B_470212295 chr5B 470212295 G A G A 3 missense_variant MODERATE transcript unique_Triplet 470211986 470215442 3457 1 0.0289268151576511 RFvsST 134922827 638605184 503682358 no 108.584235916148 TraesCS5B01G284800 chr5B_470406101 chr5B 470406101 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 470402486 470406081 3596 2 0.0556173526140156 RFvsST 134922827 638605184 503682358 no 142.361643112255 TraesCS5B01G284800 chr5B_470402710 chr5B 470402710 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 470402486 470406081 3596 2 0.0556173526140156 RFvsST 134922827 638605184 503682358 no 142.361643112255 TraesCS5B01G285300 chr5B_470647572 chr5B 470647572 A T A T 3 missense_variant MODERATE transcript non_Triplet 470647557 470649253 1697 4 0.235710076605775 RFvsST 134922827 638605184 503682358 no 121.211936815896 TraesCS5B01G285300 chr5B_470648391 chr5B 470648391 G A G A 3 missense_variant MODERATE transcript non_Triplet 470647557 470649253 1697 4 0.235710076605775 RFvsST 134922827 638605184 503682358 no 121.211936815896 TraesCS5B01G285300 chr5B_470648960 chr5B 470648960 C T C T 3 missense_variant MODERATE transcript non_Triplet 470647557 470649253 1697 4 0.235710076605775 RFvsST 134922827 638605184 503682358 no 121.211936815896 TraesCS5B01G285300 chr5B_470648649 chr5B 470648649 A G A G 3 missense_variant MODERATE transcript non_Triplet 470647557 470649253 1697 4 0.235710076605775 RFvsST 134922827 638605184 503682358 no 121.211936815896 TraesCS5B01G285500 chr5B_470976951 chr5B 470976951 T C T C 3 missense_variant MODERATE transcript unique_Triplet 470976663 470978978 2316 1 0.0431778929188256 RFvsST 134922827 638605184 503682358 no 39.7774572755375 TraesCS5B01G285700 chr5B_471130624 chr5B 471130624 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 471131796 471135912 4117 2 0.0485790624240952 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G285700 chr5B_471127825 chr5B 471127825 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 471131796 471135912 4117 2 0.0485790624240952 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G285800 chr5B_471309192 chr5B 471309192 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 471300802 471305374 4573 1 0.0218674830527006 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G286500 chr5B_472680489 chr5B 472680489 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 472676123 472676473 351 3 0.854700854700855 RFvsST 134922827 638605184 503682358 no 55.5872374387282 TraesCS5B01G286500 chr5B_472680682 chr5B 472680682 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 472676123 472676473 351 3 0.854700854700855 RFvsST 134922827 638605184 503682358 no 55.5872374387282 TraesCS5B01G286500 chr5B_472678927 chr5B 472678927 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 472676123 472676473 351 3 0.854700854700855 RFvsST 134922827 638605184 503682358 no 55.5872374387282 TraesCS5B01G286600 chr5B_472739063 chr5B 472739063 G G A A 4 missense_variant MODERATE transcript unique_Triplet 472739022 472743368 4347 2 0.0460087416609156 RFvsST 134922827 638605184 503682358 no 89.4463309647928 TraesCS5B01G286600 chr5B_472740571 chr5B 472740571 C C T T 4 missense_variant MODERATE transcript unique_Triplet 472739022 472743368 4347 2 0.0460087416609156 RFvsST 134922827 638605184 503682358 no 89.4463309647928 TraesCS5B01G286800 chr5B_473116129 chr5B 473116129 T T C C 4 missense_variant MODERATE transcript non_Triplet 473114610 473118530 3921 3 0.0765110941086457 RFvsST 134922827 638605184 503682358 no 66.8560052285346 TraesCS5B01G286800 chr5B_473115587 chr5B 473115587 G G A A 4 missense_variant MODERATE transcript non_Triplet 473114610 473118530 3921 3 0.0765110941086457 RFvsST 134922827 638605184 503682358 no 66.8560052285346 TraesCS5B01G286800 chr5B_473114356 chr5B 473114356 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 473114610 473118530 3921 3 0.0765110941086457 RFvsST 134922827 638605184 503682358 no 66.8560052285346 TraesCS5B01G286900 chr5B_473178587 chr5B 473178587 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 473175281 473178390 3110 1 0.0321543408360129 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G287300 chr5B_473520168 chr5B 473520168 T T C C 4 missense_variant MODERATE transcript non_Triplet 473518615 473520171 1557 1 0.0642260757867694 RFvsST 134922827 638605184 503682358 no 139.803445098038 TraesCS5B01G287600 chr5B_473639593 chr5B 473639593 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 473637863 473639645 1783 1 0.0560852495793606 RFvsST 134922827 638605184 503682358 no 68.0452858463307 TraesCS5B01G287700 chr5B_473642456 chr5B 473642456 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 473641050 473642524 1475 2 0.135593220338983 RFvsST 134922827 638605184 503682358 no 5.63781590870186 TraesCS5B01G287700 chr5B_473642332 chr5B 473642332 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 473641050 473642524 1475 2 0.135593220338983 RFvsST 134922827 638605184 503682358 no 5.63781590870186 TraesCS5B01G287900 chr5B_473740324 chr5B 473740324 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 473740340 473742222 1883 4 0.212426978226235 RFvsST 134922827 638605184 503682358 no 40.6253082877111 TraesCS5B01G287900 chr5B_473740647 chr5B 473740647 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 473740340 473742222 1883 4 0.212426978226235 RFvsST 134922827 638605184 503682358 no 40.6253082877111 TraesCS5B01G287900 chr5B_473740451 chr5B 473740451 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 473740340 473742222 1883 4 0.212426978226235 RFvsST 134922827 638605184 503682358 no 40.6253082877111 TraesCS5B01G287900 chr5B_473740211 chr5B 473740211 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 473740340 473742222 1883 4 0.212426978226235 RFvsST 134922827 638605184 503682358 no 40.6253082877111 TraesCS5B01G289700 chr5B_475589885 chr5B 475589885 C C T T 4 synonymous_variant LOW transcript unique_Triplet 475585922 475589972 4051 2 0.0493705257960997 RFvsST 134922827 638605184 503682358 no 90.7192954067159 TraesCS5B01G289700 chr5B_475586590 chr5B 475586590 T C T C 3 synonymous_variant LOW transcript unique_Triplet 475585922 475589972 4051 2 0.0493705257960997 RFvsST 134922827 638605184 503682358 no 90.7192954067159 TraesCS5B01G289900 chr5B_476015740 chr5B 476015740 C A C A 3 synonymous_variant LOW transcript non_Triplet 476012444 476015908 3465 1 0.0288600288600289 RFvsST 134922827 638605184 503682358 no 421.984665492633 TraesCS5B01G290500 chr5B_476456319 chr5B 476456319 G G A A 4 synonymous_variant LOW transcript unique_Triplet 476454606 476461144 6539 1 0.0152928582352042 RFvsST 134922827 638605184 503682358 no 25.2887314068756 TraesCS5B01G290600 chr5B_476624255 chr5B 476624255 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 476624321 476630731 6411 1 0.0155981906098893 RFvsST 134922827 638605184 503682358 no 27.6815754614788 TraesCS5B01G290700 chr5B_476630917 chr5B 476630917 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 476632317 476637680 5364 4 0.0745712155108128 RFvsST 134922827 638605184 503682358 no 257.967946974092 TraesCS5B01G290700 chr5B_476637318 chr5B 476637318 G C G C 3 missense_variant MODERATE transcript unique_Triplet 476632317 476637680 5364 4 0.0745712155108128 RFvsST 134922827 638605184 503682358 no 257.967946974092 TraesCS5B01G290700 chr5B_476636031 chr5B 476636031 C T C T 3 synonymous_variant LOW transcript unique_Triplet 476632317 476637680 5364 4 0.0745712155108128 RFvsST 134922827 638605184 503682358 no 257.967946974092 TraesCS5B01G290700 chr5B_476636741 chr5B 476636741 C T C T 3 synonymous_variant LOW transcript unique_Triplet 476632317 476637680 5364 4 0.0745712155108128 RFvsST 134922827 638605184 503682358 no 257.967946974092 TraesCS5B01G291500 chr5B_477068320 chr5B 477068320 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 477063916 477068292 4377 1 0.0228466986520448 RFvsST 134922827 638605184 503682358 no 137.175752631037 TraesCS5B01G291800 chr5B_477423401 chr5B 477423401 A A C C 4 missense_variant MODERATE transcript unique_Triplet 477423133 477424973 1841 1 0.0543183052688756 RFvsST 134922827 638605184 503682358 no 85.1790742667399 TraesCS5B01G291900 chr5B_477496274 chr5B 477496274 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 477496589 477498873 2285 3 0.131291028446389 RFvsST 134922827 638605184 503682358 no 73.4950416410638 TraesCS5B01G291900 chr5B_477498906 chr5B 477498906 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 477496589 477498873 2285 3 0.131291028446389 RFvsST 134922827 638605184 503682358 no 73.4950416410638 TraesCS5B01G291900 chr5B_477496087 chr5B 477496087 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 477496589 477498873 2285 3 0.131291028446389 RFvsST 134922827 638605184 503682358 no 73.4950416410638 TraesCS5B01G292800 chr5B_478305618 chr5B 478305618 A A G G 4 synonymous_variant LOW transcript unique_Triplet 478305258 478316832 11575 1 0.00863930885529158 RFvsST 134922827 638605184 503682358 no 23.5393610015888 TraesCS5B01G292900 chr5B_478323288 chr5B 478323288 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 478322632 478323273 642 1 0.155763239875389 RFvsST 134922827 638605184 503682358 no 83.3534496379262 TraesCS5B01G293900 chr5B_478479190 chr5B 478479190 C C T T 4 missense_variant MODERATE transcript unique_Triplet 478476296 478480827 4532 3 0.0661959399823478 RFvsST 134922827 638605184 503682358 no 111.39805024339 TraesCS5B01G293900 chr5B_478479545 chr5B 478479545 G G A A 4 missense_variant MODERATE transcript unique_Triplet 478476296 478480827 4532 3 0.0661959399823478 RFvsST 134922827 638605184 503682358 no 111.39805024339 TraesCS5B01G293900 chr5B_478476406 chr5B 478476406 A A G G 4 synonymous_variant LOW transcript unique_Triplet 478476296 478480827 4532 3 0.0661959399823478 RFvsST 134922827 638605184 503682358 no 111.39805024339 TraesCS5B01G294400 chr5B_478741343 chr5B 478741343 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 478741104 478746314 5211 1 0.0191901746305891 RFvsST 134922827 638605184 503682358 no 395.591185355138 TraesCS5B01G294500 chr5B_478756092 chr5B 478756092 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 478749255 478754811 5557 2 0.0359906424329674 RFvsST 134922827 638605184 503682358 no 485.118149360594 TraesCS5B01G294500 chr5B_478754853 chr5B 478754853 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 478749255 478754811 5557 2 0.0359906424329674 RFvsST 134922827 638605184 503682358 no 485.118149360594 TraesCS5B01G294600 chr5B_478752504 chr5B 478752504 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752512 chr5B 478752512 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478754229 chr5B 478754229 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478756723 chr5B 478756723 T C T C 3 synonymous_variant LOW transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752722 chr5B 478752722 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478753187 chr5B 478753187 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478753053 chr5B 478753053 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752106 chr5B 478752106 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478753049 chr5B 478753049 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752664 chr5B 478752664 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752866 chr5B 478752866 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478753420 chr5B 478753420 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478764124 chr5B 478764124 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478752984 chr5B 478752984 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478753112 chr5B 478753112 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294600 chr5B_478754380 chr5B 478754380 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 478756141 478764076 7936 16 0.201612903225806 RFvsST 134922827 638605184 503682358 no 153.38508063596 TraesCS5B01G294900 chr5B_478931719 chr5B 478931719 A G A G 3 synonymous_variant LOW transcript non_Triplet 478930149 478932955 2807 3 0.106875667972925 RFvsST 134922827 638605184 503682358 no 94.9410416540507 TraesCS5B01G294900 chr5B_478930513 chr5B 478930513 C G C G 3 missense_variant MODERATE transcript non_Triplet 478930149 478932955 2807 3 0.106875667972925 RFvsST 134922827 638605184 503682358 no 94.9410416540507 TraesCS5B01G294900 chr5B_478931094 chr5B 478931094 T C T C 3 missense_variant MODERATE transcript non_Triplet 478930149 478932955 2807 3 0.106875667972925 RFvsST 134922827 638605184 503682358 no 94.9410416540507 TraesCS5B01G299400 chr5B_483000817 chr5B 483000817 C T C T 3 missense_variant MODERATE transcript non_Triplet 482998039 483002172 4134 1 0.0241896468311563 RFvsST 134922827 638605184 503682358 no 271.262521853915 TraesCS5B01G299500 chr5B_483009697 chr5B 483009697 A G A G 3 synonymous_variant LOW transcript non_Triplet 483007778 483014866 7089 2 0.0282127239384963 RFvsST 134922827 638605184 503682358 no 227.934219908607 TraesCS5B01G299500 chr5B_483009541 chr5B 483009541 T C T C 3 synonymous_variant LOW transcript non_Triplet 483007778 483014866 7089 2 0.0282127239384963 RFvsST 134922827 638605184 503682358 no 227.934219908607 TraesCS5B01G300000 chr5B_484735572 chr5B 484735572 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 484730470 484733168 2699 1 0.0370507595405706 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G300100 chr5B_484735498 chr5B 484735498 C G C G 3 missense_variant MODERATE transcript unique_Triplet 484733376 484735552 2177 2 0.091869545245751 RFvsST 134922827 638605184 503682358 no 17.9896637906462 TraesCS5B01G300100 chr5B_484734474 chr5B 484734474 C G C G 3 missense_variant MODERATE transcript unique_Triplet 484733376 484735552 2177 2 0.091869545245751 RFvsST 134922827 638605184 503682358 no 17.9896637906462 TraesCS5B01G300300 chr5B_485155333 chr5B 485155333 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 485154212 485155189 978 1 0.102249488752556 RFvsST 134922827 638605184 503682358 no 652.679411618817 TraesCS5B01G300800 chr5B_485903047 chr5B 485903047 G A G A 3 missense_variant MODERATE transcript non_Triplet 485903038 485906379 3342 1 0.0299222022740874 RFvsST 134922827 638605184 503682358 no 1470.4647428964 TraesCS5B01G300900 chr5B_485909083 chr5B 485909083 G A G A 3 synonymous_variant LOW transcript unique_Triplet 485909002 485913305 4304 1 0.0232342007434944 RFvsST 134922827 638605184 503682358 no 12.0545143672086 TraesCS5B01G301100 chr5B_485997732 chr5B 485997732 G A G A 3 missense_variant MODERATE transcript non_Triplet 485995482 485998083 2602 3 0.115295926210607 RFvsST 134922827 638605184 503682358 no 53.0486141926041 TraesCS5B01G301100 chr5B_485998116 chr5B 485998116 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 485995482 485998083 2602 3 0.115295926210607 RFvsST 134922827 638605184 503682358 no 53.0486141926041 TraesCS5B01G301100 chr5B_485997910 chr5B 485997910 G T G T 3 missense_variant MODERATE transcript non_Triplet 485995482 485998083 2602 3 0.115295926210607 RFvsST 134922827 638605184 503682358 no 53.0486141926041 TraesCS5B01G303200 chr5B_487609170 chr5B 487609170 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 487606141 487608703 2563 1 0.0390167772142021 RFvsST 134922827 638605184 503682358 no 72.8968957486142 TraesCS5B01G303300 chr5B_487610788 chr5B 487610788 T C T C 3 missense_variant MODERATE transcript non_Triplet 487609281 487611597 2317 3 0.129477772982305 RFvsST 134922827 638605184 503682358 no 23.1371322082501 TraesCS5B01G303300 chr5B_487611570 chr5B 487611570 C T C T 3 missense_variant MODERATE transcript non_Triplet 487609281 487611597 2317 3 0.129477772982305 RFvsST 134922827 638605184 503682358 no 23.1371322082501 TraesCS5B01G303300 chr5B_487609341 chr5B 487609341 C T C T 3 synonymous_variant LOW transcript non_Triplet 487609281 487611597 2317 3 0.129477772982305 RFvsST 134922827 638605184 503682358 no 23.1371322082501 TraesCS5B01G303400 chr5B_487708234 chr5B 487708234 A C A C 3 synonymous_variant LOW transcript unique_Triplet 487707574 487711837 4264 1 0.0234521575984991 RFvsST 134922827 638605184 503682358 no 123.551644857671 TraesCS5B01G303700 chr5B_488014428 chr5B 488014428 G G T T 4 start_lost HIGH transcript non_Triplet 488014426 488016491 2066 1 0.0484027105517909 RFvsST 134922827 638605184 503682358 no 1093.84933150086 TraesCS5B01G304400 chr5B_488607681 chr5B 488607681 T C T C 3 synonymous_variant LOW transcript unique_Triplet 488607645 488614335 6691 2 0.0298908982214916 RFvsST 134922827 638605184 503682358 no 13.0802843797282 TraesCS5B01G304400 chr5B_488611832 chr5B 488611832 A T A T 3 synonymous_variant LOW transcript unique_Triplet 488607645 488614335 6691 2 0.0298908982214916 RFvsST 134922827 638605184 503682358 no 13.0802843797282 TraesCS5B01G305200 chr5B_489283456 chr5B 489283456 T G T G 3 missense_variant MODERATE transcript unique_Triplet 489282547 489285863 3317 2 0.0602954476936991 RFvsST 134922827 638605184 503682358 no 406.679063155182 TraesCS5B01G305200 chr5B_489282566 chr5B 489282566 C G C G 3 missense_variant MODERATE transcript unique_Triplet 489282547 489285863 3317 2 0.0602954476936991 RFvsST 134922827 638605184 503682358 no 406.679063155182 TraesCS5B01G315100 chr5B_497214293 chr5B 497214293 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 497213945 497219576 5632 2 0.0355113636363636 RFvsST 134922827 638605184 503682358 no 83.1075397569406 TraesCS5B01G315100 chr5B_497214182 chr5B 497214182 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 497213945 497219576 5632 2 0.0355113636363636 RFvsST 134922827 638605184 503682358 no 83.1075397569406 TraesCS5B01G318400 chr5B_502502728 chr5B 502502728 G G C C 4 missense_variant MODERATE transcript unique_Triplet 502501258 502508421 7164 2 0.0279173646007817 RFvsST 134922827 638605184 503682358 no 25.3890415855353 TraesCS5B01G318400 chr5B_502501169 chr5B 502501169 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 502501258 502508421 7164 2 0.0279173646007817 RFvsST 134922827 638605184 503682358 no 25.3890415855353 TraesCS5B01G318700 chr5B_503093425 chr5B 503093425 A A G G 4 synonymous_variant LOW transcript unique_Triplet 503093027 503101794 8768 4 0.0456204379562044 RFvsST 134922827 638605184 503682358 no 631.163417070536 TraesCS5B01G318700 chr5B_503101320 chr5B 503101320 C C T T 4 synonymous_variant LOW transcript unique_Triplet 503093027 503101794 8768 4 0.0456204379562044 RFvsST 134922827 638605184 503682358 no 631.163417070536 TraesCS5B01G318700 chr5B_503100455 chr5B 503100455 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503093027 503101794 8768 4 0.0456204379562044 RFvsST 134922827 638605184 503682358 no 631.163417070536 TraesCS5B01G318700 chr5B_503093980 chr5B 503093980 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503093027 503101794 8768 4 0.0456204379562044 RFvsST 134922827 638605184 503682358 no 631.163417070536 TraesCS5B01G319000 chr5B_503220361 chr5B 503220361 T T C C 4 missense_variant MODERATE transcript unique_Triplet 503218569 503225711 7143 1 0.0139997200055999 RFvsST 134922827 638605184 503682358 no 4.96411504765226 TraesCS5B01G319100 chr5B_503235669 chr5B 503235669 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 503231211 503235503 4293 1 0.0232937339855579 RFvsST 134922827 638605184 503682358 no 92.0865068346174 TraesCS5B01G320100 chr5B_505484093 chr5B 505484093 T T C C 4 missense_variant MODERATE transcript unique_Triplet 505482008 505485520 3513 2 0.0569313976658127 RFvsST 134922827 638605184 503682358 no 166.361144362288 TraesCS5B01G320100 chr5B_505482563 chr5B 505482563 A A G G 4 missense_variant MODERATE transcript unique_Triplet 505482008 505485520 3513 2 0.0569313976658127 RFvsST 134922827 638605184 503682358 no 166.361144362288 TraesCS5B01G320300 chr5B_505771011 chr5B 505771011 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 505767509 505770903 3395 3 0.0883652430044183 RFvsST 134922827 638605184 503682358 no 11.6653206181458 TraesCS5B01G320300 chr5B_505770742 chr5B 505770742 C C T T 4 synonymous_variant LOW transcript unique_Triplet 505767509 505770903 3395 3 0.0883652430044183 RFvsST 134922827 638605184 503682358 no 11.6653206181458 TraesCS5B01G320300 chr5B_505770523 chr5B 505770523 G G A A 4 synonymous_variant LOW transcript unique_Triplet 505767509 505770903 3395 3 0.0883652430044183 RFvsST 134922827 638605184 503682358 no 11.6653206181458 TraesCS5B01G320700 chr5B_506275165 chr5B 506275165 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 506268881 506274474 5594 4 0.0715051841258491 RFvsST 134922827 638605184 503682358 no 1399.16631270357 TraesCS5B01G320700 chr5B_506274537 chr5B 506274537 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 506268881 506274474 5594 4 0.0715051841258491 RFvsST 134922827 638605184 503682358 no 1399.16631270357 TraesCS5B01G320700 chr5B_506275233 chr5B 506275233 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 506268881 506274474 5594 4 0.0715051841258491 RFvsST 134922827 638605184 503682358 no 1399.16631270357 TraesCS5B01G320700 chr5B_506275787 chr5B 506275787 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 506268881 506274474 5594 4 0.0715051841258491 RFvsST 134922827 638605184 503682358 no 1399.16631270357 TraesCS5B01G322000 chr5B_506958377 chr5B 506958377 G G A A 4 missense_variant MODERATE transcript unique_Triplet 506952688 506961948 9261 1 0.0107979699816435 RFvsST 134922827 638605184 503682358 no 791.772395750986 TraesCS5B01G328200 chr5B_511697426 chr5B 511697426 A A G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 511695246 511697474 2229 1 0.0448631673396142 RFvsST 134922827 638605184 503682358 no 261.356270671414 TraesCS5B01G328600 chr5B_512246910 chr5B 512246910 G G T T 4 synonymous_variant LOW transcript unique_Triplet 512244486 512247644 3159 2 0.0633111744222855 RFvsST 134922827 638605184 503682358 no 778.800603117685 TraesCS5B01G328600 chr5B_512246964 chr5B 512246964 C C T T 4 synonymous_variant LOW transcript unique_Triplet 512244486 512247644 3159 2 0.0633111744222855 RFvsST 134922827 638605184 503682358 no 778.800603117685 TraesCS5B01G329000 chr5B_512983004 chr5B 512983004 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512984220 chr5B 512984220 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512982864 chr5B 512982864 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512984087 chr5B 512984087 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512984059 chr5B 512984059 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512982997 chr5B 512982997 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512983816 chr5B 512983816 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329000 chr5B_512982877 chr5B 512982877 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512986923 512990671 3749 8 0.213390237396639 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G329500 chr5B_513606340 chr5B 513606340 C C T T 4 synonymous_variant LOW transcript unique_Triplet 513597575 513608224 10650 5 0.0469483568075117 RFvsST 134922827 638605184 503682358 no 182.89216569989 TraesCS5B01G329500 chr5B_513607189 chr5B 513607189 A A G G 4 synonymous_variant LOW transcript unique_Triplet 513597575 513608224 10650 5 0.0469483568075117 RFvsST 134922827 638605184 503682358 no 182.89216569989 TraesCS5B01G329500 chr5B_513605894 chr5B 513605894 T T C C 4 missense_variant MODERATE transcript unique_Triplet 513597575 513608224 10650 5 0.0469483568075117 RFvsST 134922827 638605184 503682358 no 182.89216569989 TraesCS5B01G329500 chr5B_513607718 chr5B 513607718 A A G G 4 missense_variant MODERATE transcript unique_Triplet 513597575 513608224 10650 5 0.0469483568075117 RFvsST 134922827 638605184 503682358 no 182.89216569989 TraesCS5B01G329500 chr5B_513607849 chr5B 513607849 C C T T 4 synonymous_variant LOW transcript unique_Triplet 513597575 513608224 10650 5 0.0469483568075117 RFvsST 134922827 638605184 503682358 no 182.89216569989 TraesCS5B01G330100 chr5B_514278868 chr5B 514278868 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 514278710 514279627 918 1 0.108932461873638 RFvsST 134922827 638605184 503682358 no 35.0106614417527 TraesCS5B01G330600 chr5B_514928540 chr5B 514928540 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330600 chr5B_514928476 chr5B 514928476 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330600 chr5B_514933979 chr5B 514933979 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330600 chr5B_514929144 chr5B 514929144 A A G G 4 synonymous_variant LOW transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330600 chr5B_514934081 chr5B 514934081 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330600 chr5B_514934034 chr5B 514934034 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 514928386 514932721 4336 6 0.138376383763838 RFvsST 134922827 638605184 503682358 no 395.793368676482 TraesCS5B01G330800 chr5B_515186993 chr5B 515186993 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 515185605 515186810 1206 1 0.0829187396351575 RFvsST 134922827 638605184 503682358 no 317.293404693636 TraesCS5B01G331100 chr5B_515197782 chr5B 515197782 G G C C 4 synonymous_variant LOW transcript unique_Triplet 515193475 515198091 4617 4 0.0866363439462855 RFvsST 134922827 638605184 503682358 no 657.213580132517 TraesCS5B01G331100 chr5B_515197957 chr5B 515197957 A A G G 4 missense_variant MODERATE transcript unique_Triplet 515193475 515198091 4617 4 0.0866363439462855 RFvsST 134922827 638605184 503682358 no 657.213580132517 TraesCS5B01G331100 chr5B_515193485 chr5B 515193485 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 515193475 515198091 4617 4 0.0866363439462855 RFvsST 134922827 638605184 503682358 no 657.213580132517 TraesCS5B01G331100 chr5B_515193618 chr5B 515193618 A A G G 4 synonymous_variant LOW transcript unique_Triplet 515193475 515198091 4617 4 0.0866363439462855 RFvsST 134922827 638605184 503682358 no 657.213580132517 TraesCS5B01G335700 chr5B_518959365 chr5B 518959365 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 518955469 518959325 3857 1 0.0259268861809697 RFvsST 134922827 638605184 503682358 no 163.192864360982 TraesCS5B01G336000 chr5B_519018666 chr5B 519018666 C C G G 4 synonymous_variant LOW transcript unique_Triplet 519018501 519019664 1164 3 0.257731958762887 RFvsST 134922827 638605184 503682358 no 116.199001975415 TraesCS5B01G336000 chr5B_519018960 chr5B 519018960 A A T T 4 synonymous_variant LOW transcript unique_Triplet 519018501 519019664 1164 3 0.257731958762887 RFvsST 134922827 638605184 503682358 no 116.199001975415 TraesCS5B01G336000 chr5B_519018845 chr5B 519018845 G G A A 4 missense_variant MODERATE transcript unique_Triplet 519018501 519019664 1164 3 0.257731958762887 RFvsST 134922827 638605184 503682358 no 116.199001975415 TraesCS5B01G336100 chr5B_519148720 chr5B 519148720 C C A A 4 synonymous_variant LOW transcript unique_Triplet 519147032 519153327 6296 1 0.0158831003811944 RFvsST 134922827 638605184 503682358 no 129.936339711116 TraesCS5B01G338900 chr5B_522933411 chr5B 522933411 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 522926638 522928820 2183 1 0.0458085203847916 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G339100 chr5B_523198912 chr5B 523198912 A G A G 3 missense_variant MODERATE transcript unique_Triplet 523195652 523202688 7037 2 0.0284212022168538 RFvsST 134922827 638605184 503682358 no 22.9556632768688 TraesCS5B01G339100 chr5B_523195963 chr5B 523195963 C C T T 4 synonymous_variant LOW transcript unique_Triplet 523195652 523202688 7037 2 0.0284212022168538 RFvsST 134922827 638605184 503682358 no 22.9556632768688 TraesCS5B01G342500 chr5B_526668465 chr5B 526668465 G G A A 4 synonymous_variant LOW transcript non_Triplet 526668126 526668563 438 1 0.228310502283105 RFvsST 134922827 638605184 503682358 no 144.650400860331 TraesCS5B01G348100 chr5B_529490690 chr5B 529490690 C C T T 4 synonymous_variant LOW transcript unique_Triplet 529488745 529492800 4056 3 0.0739644970414201 RFvsST 134922827 638605184 503682358 no 130.94733083298 TraesCS5B01G348100 chr5B_529492930 chr5B 529492930 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 529488745 529492800 4056 3 0.0739644970414201 RFvsST 134922827 638605184 503682358 no 130.94733083298 TraesCS5B01G348100 chr5B_529489651 chr5B 529489651 A A G G 4 missense_variant MODERATE transcript unique_Triplet 529488745 529492800 4056 3 0.0739644970414201 RFvsST 134922827 638605184 503682358 no 130.94733083298 TraesCS5B01G355100 chr5B_534362615 chr5B 534362615 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 534362780 534365553 2774 4 0.144196106705119 RFvsST 134922827 638605184 503682358 no 207.928148061513 TraesCS5B01G355100 chr5B_534364676 chr5B 534364676 T T C C 4 missense_variant MODERATE transcript unique_Triplet 534362780 534365553 2774 4 0.144196106705119 RFvsST 134922827 638605184 503682358 no 207.928148061513 TraesCS5B01G355100 chr5B_534362722 chr5B 534362722 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 534362780 534365553 2774 4 0.144196106705119 RFvsST 134922827 638605184 503682358 no 207.928148061513 TraesCS5B01G355100 chr5B_534364252 chr5B 534364252 T T C C 4 synonymous_variant LOW transcript unique_Triplet 534362780 534365553 2774 4 0.144196106705119 RFvsST 134922827 638605184 503682358 no 207.928148061513 TraesCS5B01G355800 chr5B_535140637 chr5B 535140637 C C T T 4 synonymous_variant LOW transcript unique_Triplet 535139641 535140795 1155 1 0.0865800865800866 RFvsST 134922827 638605184 503682358 no 90.9896875150698 TraesCS5B01G356600 chr5B_536322709 chr5B 536322709 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 536316853 536317728 876 1 0.114155251141553 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G356700 chr5B_536323495 chr5B 536323495 A A G G 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536323654 chr5B 536323654 T T G G 4 missense_variant MODERATE transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536323919 chr5B 536323919 C C T T 4 missense_variant MODERATE transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536323450 chr5B 536323450 G G A A 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536323233 chr5B 536323233 T T G G 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536323831 chr5B 536323831 G G T T 4 missense_variant MODERATE transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536325028 chr5B 536325028 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324642 chr5B 536324642 T T G G 4 missense_variant MODERATE transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324136 chr5B 536324136 G G A A 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324637 chr5B 536324637 T T G G 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324001 chr5B 536324001 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324970 chr5B 536324970 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536324139 chr5B 536324139 A A G G 4 synonymous_variant LOW transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G356700 chr5B_536325014 chr5B 536325014 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 536322818 536324938 2121 14 0.66006600660066 RFvsST 134922827 638605184 503682358 no 173.286419316467 TraesCS5B01G357000 chr5B_536513480 chr5B 536513480 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 536505515 536509118 3604 1 0.0277469478357381 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G357200 chr5B_536588560 chr5B 536588560 T T G G 4 missense_variant MODERATE transcript unique_Triplet 536587125 536589755 2631 3 0.114025085518814 RFvsST 134922827 638605184 503682358 no 1123.478507598 TraesCS5B01G357200 chr5B_536587695 chr5B 536587695 C C T T 4 synonymous_variant LOW transcript unique_Triplet 536587125 536589755 2631 3 0.114025085518814 RFvsST 134922827 638605184 503682358 no 1123.478507598 TraesCS5B01G357200 chr5B_536588142 chr5B 536588142 A A G G 4 synonymous_variant LOW transcript unique_Triplet 536587125 536589755 2631 3 0.114025085518814 RFvsST 134922827 638605184 503682358 no 1123.478507598 TraesCS5B01G357300 chr5B_536591527 chr5B 536591527 T T C C 4 missense_variant MODERATE transcript unique_Triplet 536591081 536592848 1768 1 0.0565610859728507 RFvsST 134922827 638605184 503682358 no 51.518911384786 TraesCS5B01G357500 chr5B_536680805 chr5B 536680805 A A G G 4 synonymous_variant LOW transcript unique_Triplet 536680306 536683194 2889 4 0.138456213222568 RFvsST 134922827 638605184 503682358 no 15.5997259845276 TraesCS5B01G357500 chr5B_536680976 chr5B 536680976 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 536680306 536683194 2889 4 0.138456213222568 RFvsST 134922827 638605184 503682358 no 15.5997259845276 TraesCS5B01G357500 chr5B_536680853 chr5B 536680853 C C T T 4 synonymous_variant LOW transcript unique_Triplet 536680306 536683194 2889 4 0.138456213222568 RFvsST 134922827 638605184 503682358 no 15.5997259845276 TraesCS5B01G357500 chr5B_536680535 chr5B 536680535 A A G G 4 synonymous_variant LOW transcript unique_Triplet 536680306 536683194 2889 4 0.138456213222568 RFvsST 134922827 638605184 503682358 no 15.5997259845276 TraesCS5B01G358300 chr5B_537960559 chr5B 537960559 A A T T 4 missense_variant MODERATE transcript non_Triplet 537960326 537964074 3749 1 0.0266737796745799 RFvsST 134922827 638605184 503682358 no 223.613899061153 TraesCS5B01G358600 chr5B_538548049 chr5B 538548049 C C T T 4 synonymous_variant LOW transcript unique_Triplet 538542172 538548418 6247 1 0.0160076836881703 RFvsST 134922827 638605184 503682358 no 550.263506712762 TraesCS5B01G359200 chr5B_539072740 chr5B 539072740 A A G G 4 synonymous_variant LOW transcript unique_Triplet 539072659 539075302 2644 5 0.18910741301059 RFvsST 134922827 638605184 503682358 no 46.8937348957618 TraesCS5B01G359200 chr5B_539072959 chr5B 539072959 C C T T 4 synonymous_variant LOW transcript unique_Triplet 539072659 539075302 2644 5 0.18910741301059 RFvsST 134922827 638605184 503682358 no 46.8937348957618 TraesCS5B01G359200 chr5B_539074506 chr5B 539074506 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539072659 539075302 2644 5 0.18910741301059 RFvsST 134922827 638605184 503682358 no 46.8937348957618 TraesCS5B01G359200 chr5B_539075258 chr5B 539075258 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539072659 539075302 2644 5 0.18910741301059 RFvsST 134922827 638605184 503682358 no 46.8937348957618 TraesCS5B01G359200 chr5B_539073318 chr5B 539073318 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539072659 539075302 2644 5 0.18910741301059 RFvsST 134922827 638605184 503682358 no 46.8937348957618 TraesCS5B01G359400 chr5B_539292078 chr5B 539292078 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 539286119 539289936 3818 1 0.0261917234154007 RFvsST 134922827 638605184 503682358 no 38.213845505762 TraesCS5B01G359500 chr5B_539292437 chr5B 539292437 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293016 chr5B 539293016 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292818 chr5B 539292818 C C G G 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292773 chr5B 539292773 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293565 chr5B 539293565 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292545 chr5B 539292545 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539294006 chr5B 539294006 C C G G 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293907 chr5B 539293907 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292304 chr5B 539292304 G G C C 4 missense_variant MODERATE transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292590 chr5B 539292590 C C T T 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292878 chr5B 539292878 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293529 chr5B 539293529 T T G G 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539296289 chr5B 539296289 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292326 chr5B 539292326 C C A A 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292875 chr5B 539292875 C C T T 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293772 chr5B 539293772 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292431 chr5B 539292431 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292701 chr5B 539292701 T T G G 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539293688 chr5B 539293688 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539292362 chr5B 539292362 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359500 chr5B_539296290 chr5B 539296290 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539292231 539294869 2639 21 0.795755968169761 RFvsST 134922827 638605184 503682358 no 468.627002225001 TraesCS5B01G359700 chr5B_539460956 chr5B 539460956 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539458469 539460587 2119 5 0.235960358659745 RFvsST 134922827 638605184 503682358 no 285.939875086988 TraesCS5B01G359700 chr5B_539460927 chr5B 539460927 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539458469 539460587 2119 5 0.235960358659745 RFvsST 134922827 638605184 503682358 no 285.939875086988 TraesCS5B01G359700 chr5B_539460878 chr5B 539460878 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539458469 539460587 2119 5 0.235960358659745 RFvsST 134922827 638605184 503682358 no 285.939875086988 TraesCS5B01G359700 chr5B_539460958 chr5B 539460958 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539458469 539460587 2119 5 0.235960358659745 RFvsST 134922827 638605184 503682358 no 285.939875086988 TraesCS5B01G359700 chr5B_539460901 chr5B 539460901 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539458469 539460587 2119 5 0.235960358659745 RFvsST 134922827 638605184 503682358 no 285.939875086988 TraesCS5B01G359800 chr5B_539469382 chr5B 539469382 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 539461078 539469363 8286 3 0.0362056480811006 RFvsST 134922827 638605184 503682358 no 142.150241154329 TraesCS5B01G359800 chr5B_539465469 chr5B 539465469 G G A A 4 synonymous_variant LOW transcript unique_Triplet 539461078 539469363 8286 3 0.0362056480811006 RFvsST 134922827 638605184 503682358 no 142.150241154329 TraesCS5B01G359800 chr5B_539462377 chr5B 539462377 A A G G 4 synonymous_variant LOW transcript unique_Triplet 539461078 539469363 8286 3 0.0362056480811006 RFvsST 134922827 638605184 503682358 no 142.150241154329 TraesCS5B01G359900 chr5B_539472045 chr5B 539472045 T T A A 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539470051 chr5B 539470051 C C G G 4 missense_variant MODERATE transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539471991 chr5B 539471991 A A T T 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539472705 chr5B 539472705 A A G G 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539469966 chr5B 539469966 C C T T 4 missense_variant MODERATE transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539470033 chr5B 539470033 C C T T 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539469922 chr5B 539469922 G G C C 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539472051 chr5B 539472051 C C T T 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G359900 chr5B_539471970 chr5B 539471970 T T C C 4 synonymous_variant LOW transcript unique_Triplet 539469877 539475036 5160 9 0.174418604651163 RFvsST 134922827 638605184 503682358 no 53.5707021537443 TraesCS5B01G360000 chr5B_539614184 chr5B 539614184 A A G G 4 synonymous_variant LOW transcript non_Triplet 539610861 539614187 3327 1 0.0300571085061617 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G360200 chr5B_539935191 chr5B 539935191 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539919905 539931224 11320 2 0.0176678445229682 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G360200 chr5B_539935183 chr5B 539935183 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 539919905 539931224 11320 2 0.0176678445229682 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G362300 chr5B_541620350 chr5B 541620350 G G A A 4 synonymous_variant LOW transcript unique_Triplet 541617315 541622624 5310 1 0.0188323917137476 RFvsST 134922827 638605184 503682358 no 36.3854665395023 TraesCS5B01G362400 chr5B_541684675 chr5B 541684675 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 541683185 541684511 1327 1 0.0753579502637528 RFvsST 134922827 638605184 503682358 no 117.131711247412 TraesCS5B01G366500 chr5B_545406559 chr5B 545406559 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 545398634 545403470 4837 1 0.0206739714699194 RFvsST 134922827 638605184 503682358 no 293.068997173503 TraesCS5B01G366700 chr5B_545406889 chr5B 545406889 C C T T 4 missense_variant MODERATE transcript unique_Triplet 545406657 545409250 2594 2 0.0771010023130301 RFvsST 134922827 638605184 503682358 no 28.2334249964274 TraesCS5B01G366700 chr5B_545406671 chr5B 545406671 C C G G 4 missense_variant MODERATE transcript unique_Triplet 545406657 545409250 2594 2 0.0771010023130301 RFvsST 134922827 638605184 503682358 no 28.2334249964274 TraesCS5B01G367100 chr5B_545796021 chr5B 545796021 G G A A 4 missense_variant MODERATE transcript unique_Triplet 545791194 545801588 10395 5 0.0481000481000481 RFvsST 134922827 638605184 503682358 no 262.067664626383 TraesCS5B01G367100 chr5B_545801535 chr5B 545801535 A A G G 4 missense_variant MODERATE transcript unique_Triplet 545791194 545801588 10395 5 0.0481000481000481 RFvsST 134922827 638605184 503682358 no 262.067664626383 TraesCS5B01G367100 chr5B_545800854 chr5B 545800854 T T C C 4 missense_variant MODERATE transcript unique_Triplet 545791194 545801588 10395 5 0.0481000481000481 RFvsST 134922827 638605184 503682358 no 262.067664626383 TraesCS5B01G367100 chr5B_545798773 chr5B 545798773 G G A A 4 missense_variant MODERATE transcript unique_Triplet 545791194 545801588 10395 5 0.0481000481000481 RFvsST 134922827 638605184 503682358 no 262.067664626383 TraesCS5B01G367100 chr5B_545801545 chr5B 545801545 C C G G 4 missense_variant MODERATE transcript unique_Triplet 545791194 545801588 10395 5 0.0481000481000481 RFvsST 134922827 638605184 503682358 no 262.067664626383 TraesCS5B01G367300 chr5B_545923711 chr5B 545923711 T T C C 4 synonymous_variant LOW transcript non_Triplet 545922840 545924282 1443 2 0.138600138600139 RFvsST 134922827 638605184 503682358 no 462.872603282094 TraesCS5B01G367300 chr5B_545923104 chr5B 545923104 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 545922840 545924282 1443 2 0.138600138600139 RFvsST 134922827 638605184 503682358 no 462.872603282094 TraesCS5B01G368500 chr5B_546830818 chr5B 546830818 C C T T 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826776 chr5B 546826776 T T C C 4 missense_variant MODERATE transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546830735 chr5B 546830735 C C T T 4 missense_variant MODERATE transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826771 chr5B 546826771 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827880 chr5B 546827880 T T C C 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546830749 chr5B 546830749 A A G G 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826777 chr5B 546826777 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827934 chr5B 546827934 T T C C 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826603 chr5B 546826603 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827254 chr5B 546827254 C C T T 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827515 chr5B 546827515 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546830866 chr5B 546830866 T T C C 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826753 chr5B 546826753 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827248 chr5B 546827248 G G C C 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826853 chr5B 546826853 G G C C 4 missense_variant MODERATE transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546831391 chr5B 546831391 G G C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827149 chr5B 546827149 T T C C 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546830806 chr5B 546830806 A A G G 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546826855 chr5B 546826855 G G A A 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546827787 chr5B 546827787 A A G G 4 synonymous_variant LOW transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368500 chr5B_546828601 chr5B 546828601 T T C C 4 missense_variant MODERATE transcript unique_Triplet 546826487 546832029 5543 21 0.378856215046004 RFvsST 134922827 638605184 503682358 no 408.988761707974 TraesCS5B01G368600 chr5B_546851289 chr5B 546851289 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 546845744 546851345 5602 1 0.0178507675830061 RFvsST 134922827 638605184 503682358 no 233.363502823822 TraesCS5B01G370000 chr5B_548721264 chr5B 548721264 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 548725409 548728159 2751 3 0.109051254089422 RFvsST 134922827 638605184 503682358 no 71.3988138272192 TraesCS5B01G370000 chr5B_548727309 chr5B 548727309 G G A A 4 missense_variant MODERATE transcript unique_Triplet 548725409 548728159 2751 3 0.109051254089422 RFvsST 134922827 638605184 503682358 no 71.3988138272192 TraesCS5B01G370000 chr5B_548727893 chr5B 548727893 A A G G 4 missense_variant MODERATE transcript unique_Triplet 548725409 548728159 2751 3 0.109051254089422 RFvsST 134922827 638605184 503682358 no 71.3988138272192 TraesCS5B01G370600 chr5B_549671119 chr5B 549671119 G G A A 4 missense_variant MODERATE transcript unique_Triplet 549669996 549671423 1428 4 0.280112044817927 RFvsST 134922827 638605184 503682358 no 236.673632995106 TraesCS5B01G370600 chr5B_549671470 chr5B 549671470 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 549669996 549671423 1428 4 0.280112044817927 RFvsST 134922827 638605184 503682358 no 236.673632995106 TraesCS5B01G370600 chr5B_549671230 chr5B 549671230 G A G A 3 missense_variant MODERATE transcript unique_Triplet 549669996 549671423 1428 4 0.280112044817927 RFvsST 134922827 638605184 503682358 no 236.673632995106 TraesCS5B01G370600 chr5B_549670712 chr5B 549670712 C C T T 4 missense_variant MODERATE transcript unique_Triplet 549669996 549671423 1428 4 0.280112044817927 RFvsST 134922827 638605184 503682358 no 236.673632995106 TraesCS5B01G371100 chr5B_549948130 chr5B 549948130 C C T T 4 missense_variant MODERATE transcript non_Triplet 549946902 549949292 2391 1 0.0418235048097031 RFvsST 134922827 638605184 503682358 no 86.63510509889 TraesCS5B01G371200 chr5B_549953533 chr5B 549953533 C C A A 4 synonymous_variant LOW transcript unique_Triplet 549951785 549955081 3297 2 0.0606612071580224 RFvsST 134922827 638605184 503682358 no 37.8216816949397 TraesCS5B01G371200 chr5B_549953268 chr5B 549953268 G G A A 4 missense_variant MODERATE transcript unique_Triplet 549951785 549955081 3297 2 0.0606612071580224 RFvsST 134922827 638605184 503682358 no 37.8216816949397 TraesCS5B01G371800 chr5B_550225942 chr5B 550225942 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550226158 550230211 4054 5 0.123334977799704 RFvsST 134922827 638605184 503682358 no 50.6680989671145 TraesCS5B01G371800 chr5B_550225896 chr5B 550225896 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550226158 550230211 4054 5 0.123334977799704 RFvsST 134922827 638605184 503682358 no 50.6680989671145 TraesCS5B01G371800 chr5B_550229926 chr5B 550229926 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 550226158 550230211 4054 5 0.123334977799704 RFvsST 134922827 638605184 503682358 no 50.6680989671145 TraesCS5B01G371800 chr5B_550226140 chr5B 550226140 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550226158 550230211 4054 5 0.123334977799704 RFvsST 134922827 638605184 503682358 no 50.6680989671145 TraesCS5B01G371800 chr5B_550230052 chr5B 550230052 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 550226158 550230211 4054 5 0.123334977799704 RFvsST 134922827 638605184 503682358 no 50.6680989671145 TraesCS5B01G371900 chr5B_550236547 chr5B 550236547 C C T T 4 synonymous_variant LOW transcript non_Triplet 550235481 550237242 1762 1 0.0567536889897843 RFvsST 134922827 638605184 503682358 no 182.369006891464 TraesCS5B01G372000 chr5B_550259620 chr5B 550259620 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 550255640 550256620 981 1 0.101936799184506 RFvsST 134922827 638605184 503682358 no 14.8744620669145 TraesCS5B01G372400 chr5B_550394484 chr5B 550394484 T T C C 4 synonymous_variant LOW transcript unique_Triplet 550378739 550395490 16752 5 0.029847182425979 RFvsST 134922827 638605184 503682358 no 78.8313750350792 TraesCS5B01G372400 chr5B_550388529 chr5B 550388529 T T C C 4 synonymous_variant LOW transcript unique_Triplet 550378739 550395490 16752 5 0.029847182425979 RFvsST 134922827 638605184 503682358 no 78.8313750350792 TraesCS5B01G372400 chr5B_550394216 chr5B 550394216 G G A A 4 missense_variant MODERATE transcript unique_Triplet 550378739 550395490 16752 5 0.029847182425979 RFvsST 134922827 638605184 503682358 no 78.8313750350792 TraesCS5B01G372400 chr5B_550376039 chr5B 550376039 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 550378739 550395490 16752 5 0.029847182425979 RFvsST 134922827 638605184 503682358 no 78.8313750350792 TraesCS5B01G372400 chr5B_550390467 chr5B 550390467 T T G G 4 synonymous_variant LOW transcript unique_Triplet 550378739 550395490 16752 5 0.029847182425979 RFvsST 134922827 638605184 503682358 no 78.8313750350792 TraesCS5B01G372800 chr5B_550732855 chr5B 550732855 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550727751 550732754 5004 1 0.0199840127897682 RFvsST 134922827 638605184 503682358 no 20.5015734695614 TraesCS5B01G372900 chr5B_550747957 chr5B 550747957 C C T T 4 synonymous_variant LOW transcript unique_Triplet 550747780 550750167 2388 1 0.0418760469011725 RFvsST 134922827 638605184 503682358 no 25.2228376973743 TraesCS5B01G373100 chr5B_550851192 chr5B 550851192 C C T T 4 missense_variant MODERATE transcript unique_Triplet 550849323 550852447 3125 3 0.096 RFvsST 134922827 638605184 503682358 no 407.842531253052 TraesCS5B01G373100 chr5B_550851863 chr5B 550851863 A A G G 4 synonymous_variant LOW transcript unique_Triplet 550849323 550852447 3125 3 0.096 RFvsST 134922827 638605184 503682358 no 407.842531253052 TraesCS5B01G373100 chr5B_550851161 chr5B 550851161 G G A A 4 synonymous_variant LOW transcript unique_Triplet 550849323 550852447 3125 3 0.096 RFvsST 134922827 638605184 503682358 no 407.842531253052 TraesCS5B01G373900 chr5B_551499538 chr5B 551499538 G G T T 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 551499394 551502981 3588 1 0.0278706800445931 RFvsST 134922827 638605184 503682358 no 338.533021402639 TraesCS5B01G375500 chr5B_552923467 chr5B 552923467 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 552921546 552924281 2736 2 0.0730994152046784 RFvsST 134922827 638605184 503682358 no 108.120838880871 TraesCS5B01G375500 chr5B_552923701 chr5B 552923701 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 552921546 552924281 2736 2 0.0730994152046784 RFvsST 134922827 638605184 503682358 no 108.120838880871 TraesCS5B01G376200 chr5B_554212726 chr5B 554212726 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 554204516 554212406 7891 1 0.0126726650614624 RFvsST 134922827 638605184 503682358 no 362.100433817046 TraesCS5B01G377400 chr5B_554821658 chr5B 554821658 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G377400 chr5B_554822555 chr5B 554822555 G G A A 4 synonymous_variant LOW transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G377400 chr5B_554824766 chr5B 554824766 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G377400 chr5B_554822450 chr5B 554822450 G G A A 4 synonymous_variant LOW transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G377400 chr5B_554824764 chr5B 554824764 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G377400 chr5B_554822093 chr5B 554822093 T C T C 3 synonymous_variant LOW transcript unique_Triplet 554821661 554823682 2022 6 0.29673590504451 RFvsST 134922827 638605184 503682358 no 84.6906741095081 TraesCS5B01G382100 chr5B_560396845 chr5B 560396845 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 560391947 560396772 4826 5 0.103605470368835 RFvsST 134922827 638605184 503682358 no 102.603828598673 TraesCS5B01G382100 chr5B_560396798 chr5B 560396798 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 560391947 560396772 4826 5 0.103605470368835 RFvsST 134922827 638605184 503682358 no 102.603828598673 TraesCS5B01G382100 chr5B_560395327 chr5B 560395327 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 560391947 560396772 4826 5 0.103605470368835 RFvsST 134922827 638605184 503682358 no 102.603828598673 TraesCS5B01G382100 chr5B_560396883 chr5B 560396883 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 560391947 560396772 4826 5 0.103605470368835 RFvsST 134922827 638605184 503682358 no 102.603828598673 TraesCS5B01G382100 chr5B_560395140 chr5B 560395140 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 560391947 560396772 4826 5 0.103605470368835 RFvsST 134922827 638605184 503682358 no 102.603828598673 TraesCS5B01G383100 chr5B_562049082 chr5B 562049082 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 562046476 562048970 2495 1 0.0400801603206413 RFvsST 134922827 638605184 503682358 no 96.2435652214816 TraesCS5B01G384600 chr5B_563334851 chr5B 563334851 C C T T 4 synonymous_variant LOW transcript unique_Triplet 563332987 563334899 1913 1 0.0522739153162572 RFvsST 134922827 638605184 503682358 no 58.9802502631887 TraesCS5B01G385000 chr5B_563606018 chr5B 563606018 G G T T 4 synonymous_variant LOW transcript non_Triplet 563605695 563606511 817 1 0.122399020807834 RFvsST 134922827 638605184 503682358 no 77.8233839098434 TraesCS5B01G387500 chr5B_566681082 chr5B 566681082 G A G A 3 synonymous_variant LOW transcript unique_Triplet 566675874 566683311 7438 5 0.0672223716052702 RFvsST 134922827 638605184 503682358 no 213.500440489469 TraesCS5B01G387500 chr5B_566678736 chr5B 566678736 T C T C 3 missense_variant MODERATE transcript unique_Triplet 566675874 566683311 7438 5 0.0672223716052702 RFvsST 134922827 638605184 503682358 no 213.500440489469 TraesCS5B01G387500 chr5B_566679090 chr5B 566679090 C T C T 3 synonymous_variant LOW transcript unique_Triplet 566675874 566683311 7438 5 0.0672223716052702 RFvsST 134922827 638605184 503682358 no 213.500440489469 TraesCS5B01G387500 chr5B_566679644 chr5B 566679644 A T A T 3 missense_variant MODERATE transcript unique_Triplet 566675874 566683311 7438 5 0.0672223716052702 RFvsST 134922827 638605184 503682358 no 213.500440489469 TraesCS5B01G387500 chr5B_566680003 chr5B 566680003 A G A G 3 missense_variant MODERATE transcript unique_Triplet 566675874 566683311 7438 5 0.0672223716052702 RFvsST 134922827 638605184 503682358 no 213.500440489469 TraesCS5B01G387600 chr5B_566688875 chr5B 566688875 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 566684076 566686799 2724 2 0.0734214390602056 RFvsST 134922827 638605184 503682358 no 99.9752048931612 TraesCS5B01G387600 chr5B_566689149 chr5B 566689149 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 566684076 566686799 2724 2 0.0734214390602056 RFvsST 134922827 638605184 503682358 no 99.9752048931612 TraesCS5B01G387800 chr5B_566963361 chr5B 566963361 A T A T,C 3 downstream_gene_variant MODIFIER transcript non_Triplet 566963700 566981348 17649 2 0.0113320868037849 RFvsST 134922827 638605184 503682358 no 484.125731733196 TraesCS5B01G387800 chr5B_566966108 chr5B 566966108 T A T A 3 missense_variant MODERATE transcript non_Triplet 566963700 566981348 17649 2 0.0113320868037849 RFvsST 134922827 638605184 503682358 no 484.125731733196 TraesCS5B01G390500 chr5B_570067718 chr5B 570067718 T C T C 3 synonymous_variant LOW transcript unique_Triplet 570067451 570071101 3651 1 0.0273897562311695 RFvsST 134922827 638605184 503682358 no 42.6969402069134 TraesCS5B01G391200 chr5B_570579213 chr5B 570579213 T C T C 3 missense_variant MODERATE transcript unique_Triplet 570570833 570580077 9245 3 0.0324499729583559 RFvsST 134922827 638605184 503682358 no 452.000062420155 TraesCS5B01G391200 chr5B_570571662 chr5B 570571662 A G A G 3 missense_variant MODERATE transcript unique_Triplet 570570833 570580077 9245 3 0.0324499729583559 RFvsST 134922827 638605184 503682358 no 452.000062420155 TraesCS5B01G391200 chr5B_570572436 chr5B 570572436 A G A G 3 missense_variant MODERATE transcript unique_Triplet 570570833 570580077 9245 3 0.0324499729583559 RFvsST 134922827 638605184 503682358 no 452.000062420155 TraesCS5B01G391400 chr5B_570642920 chr5B 570642920 T C T C 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570636395 chr5B 570636395 A G A G 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570637512 chr5B 570637512 C T C T 3 missense_variant MODERATE transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570641276 chr5B 570641276 C T C T 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570639833 chr5B 570639833 C T C T 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570640736 chr5B 570640736 A C A C 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570637132 chr5B 570637132 G A G A 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391400 chr5B_570641384 chr5B 570641384 C T C T 3 synonymous_variant LOW transcript unique_Triplet 570635848 570645070 9223 8 0.0867396725577361 RFvsST 134922827 638605184 503682358 no 58.3239065619493 TraesCS5B01G391500 chr5B_570892722 chr5B 570892722 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 570890411 570894877 4467 4 0.0895455563017685 RFvsST 134922827 638605184 503682358 no 834.797640966185 TraesCS5B01G391500 chr5B_570894590 chr5B 570894590 G C G C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 570890411 570894877 4467 4 0.0895455563017685 RFvsST 134922827 638605184 503682358 no 834.797640966185 TraesCS5B01G391500 chr5B_570894588 chr5B 570894588 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 570890411 570894877 4467 4 0.0895455563017685 RFvsST 134922827 638605184 503682358 no 834.797640966185 TraesCS5B01G391500 chr5B_570894710 chr5B 570894710 G C G C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 570890411 570894877 4467 4 0.0895455563017685 RFvsST 134922827 638605184 503682358 no 834.797640966185 TraesCS5B01G391700 chr5B_570924185 chr5B 570924185 A G A G 3 synonymous_variant LOW transcript unique_Triplet 570924074 570929074 5001 1 0.01999600079984 RFvsST 134922827 638605184 503682358 no 96.9650904335261 TraesCS5B01G392200 chr5B_571183417 chr5B 571183417 G C G C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 571182787 571186105 3319 1 0.0301295570955107 RFvsST 134922827 638605184 503682358 no 133.436448516139 TraesCS5B01G392400 chr5B_571188426 chr5B 571188426 C G C G 3 synonymous_variant LOW transcript unique_Triplet 571187849 571188717 869 4 0.46029919447641 RFvsST 134922827 638605184 503682358 no 76.3754034646707 TraesCS5B01G392400 chr5B_571188329 chr5B 571188329 A C A C 3 missense_variant MODERATE transcript unique_Triplet 571187849 571188717 869 4 0.46029919447641 RFvsST 134922827 638605184 503682358 no 76.3754034646707 TraesCS5B01G392400 chr5B_571188536 chr5B 571188536 A C A C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 571187849 571188717 869 4 0.46029919447641 RFvsST 134922827 638605184 503682358 no 76.3754034646707 TraesCS5B01G392400 chr5B_571188583 chr5B 571188583 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 571187849 571188717 869 4 0.46029919447641 RFvsST 134922827 638605184 503682358 no 76.3754034646707 TraesCS5B01G392600 chr5B_571231266 chr5B 571231266 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 571231287 571235695 4409 2 0.0453617600362894 RFvsST 134922827 638605184 503682358 no 36.9035020616383 TraesCS5B01G392600 chr5B_571234325 chr5B 571234325 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571231287 571235695 4409 2 0.0453617600362894 RFvsST 134922827 638605184 503682358 no 36.9035020616383 TraesCS5B01G392900 chr5B_571475214 chr5B 571475214 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571473140 571476563 3424 4 0.116822429906542 RFvsST 134922827 638605184 503682358 no 104.582925068966 TraesCS5B01G392900 chr5B_571474819 chr5B 571474819 G T G T 3 synonymous_variant LOW transcript unique_Triplet 571473140 571476563 3424 4 0.116822429906542 RFvsST 134922827 638605184 503682358 no 104.582925068966 TraesCS5B01G392900 chr5B_571475130 chr5B 571475130 C G C G 3 synonymous_variant LOW transcript unique_Triplet 571473140 571476563 3424 4 0.116822429906542 RFvsST 134922827 638605184 503682358 no 104.582925068966 TraesCS5B01G392900 chr5B_571474827 chr5B 571474827 C T C T 3 missense_variant MODERATE transcript unique_Triplet 571473140 571476563 3424 4 0.116822429906542 RFvsST 134922827 638605184 503682358 no 104.582925068966 TraesCS5B01G394200 chr5B_572143079 chr5B 572143079 T C T C 3 synonymous_variant LOW transcript unique_Triplet 572140255 572144218 3964 2 0.0504540867810293 RFvsST 134922827 638605184 503682358 no 57.3170698141254 TraesCS5B01G394200 chr5B_572142553 chr5B 572142553 G T G T 3 synonymous_variant LOW transcript unique_Triplet 572140255 572144218 3964 2 0.0504540867810293 RFvsST 134922827 638605184 503682358 no 57.3170698141254 TraesCS5B01G394300 chr5B_572342494 chr5B 572342494 G T G T 3 synonymous_variant LOW transcript non_Triplet 572341772 572344183 2412 4 0.165837479270315 RFvsST 134922827 638605184 503682358 no 2376.23541130628 TraesCS5B01G394300 chr5B_572341855 chr5B 572341855 T G T G 3 synonymous_variant LOW transcript non_Triplet 572341772 572344183 2412 4 0.165837479270315 RFvsST 134922827 638605184 503682358 no 2376.23541130628 TraesCS5B01G394300 chr5B_572342005 chr5B 572342005 A G A G 3 synonymous_variant LOW transcript non_Triplet 572341772 572344183 2412 4 0.165837479270315 RFvsST 134922827 638605184 503682358 no 2376.23541130628 TraesCS5B01G394300 chr5B_572341981 chr5B 572341981 G C G C 3 synonymous_variant LOW transcript non_Triplet 572341772 572344183 2412 4 0.165837479270315 RFvsST 134922827 638605184 503682358 no 2376.23541130628 TraesCS5B01G394400 chr5B_572351595 chr5B 572351595 C T C T 3 synonymous_variant LOW transcript unique_Triplet 572351207 572361023 9817 2 0.0203728226545788 RFvsST 134922827 638605184 503682358 no 22.4331623541119 TraesCS5B01G394400 chr5B_572358552 chr5B 572358552 G A G A 3 missense_variant MODERATE transcript unique_Triplet 572351207 572361023 9817 2 0.0203728226545788 RFvsST 134922827 638605184 503682358 no 22.4331623541119 TraesCS5B01G394700 chr5B_572391681 chr5B 572391681 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 572378743 572390785 12043 1 0.00830357884248111 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G394800 chr5B_572393698 chr5B 572393698 G A G A 3 synonymous_variant LOW transcript unique_Triplet 572391693 572394555 2863 3 0.104785190359762 RFvsST 134922827 638605184 503682358 no 18.8131765858482 TraesCS5B01G394800 chr5B_572392282 chr5B 572392282 G T G T 3 synonymous_variant LOW transcript unique_Triplet 572391693 572394555 2863 3 0.104785190359762 RFvsST 134922827 638605184 503682358 no 18.8131765858482 TraesCS5B01G394800 chr5B_572391944 chr5B 572391944 T C T C 3 missense_variant MODERATE transcript unique_Triplet 572391693 572394555 2863 3 0.104785190359762 RFvsST 134922827 638605184 503682358 no 18.8131765858482 TraesCS5B01G396200 chr5B_573217742 chr5B 573217742 G G A A 4 missense_variant MODERATE transcript unique_Triplet 573216965 573221131 4167 1 0.0239980801535877 RFvsST 134922827 638605184 503682358 no 790.149776654715 TraesCS5B01G400100 chr5B_577346871 chr5B 577346871 A C A C 3 synonymous_variant LOW transcript unique_Triplet 577342688 577347417 4730 2 0.0422832980972516 RFvsST 134922827 638605184 503682358 no 124.943709197359 TraesCS5B01G400100 chr5B_577342752 chr5B 577342752 G C G C 3 missense_variant MODERATE transcript unique_Triplet 577342688 577347417 4730 2 0.0422832980972516 RFvsST 134922827 638605184 503682358 no 124.943709197359 TraesCS5B01G400300 chr5B_577371816 chr5B 577371816 G A G A 3 synonymous_variant LOW transcript unique_Triplet 577370036 577373224 3189 1 0.0313577924114142 RFvsST 134922827 638605184 503682358 no 55.0859985560164 TraesCS5B01G400500 chr5B_577515633 chr5B 577515633 T C T C 3 synonymous_variant LOW transcript unique_Triplet 577515571 577522666 7096 3 0.0422773393461105 RFvsST 134922827 638605184 503682358 no 59.9704947212381 TraesCS5B01G400500 chr5B_577521831 chr5B 577521831 A T A T 3 missense_variant MODERATE transcript unique_Triplet 577515571 577522666 7096 3 0.0422773393461105 RFvsST 134922827 638605184 503682358 no 59.9704947212381 TraesCS5B01G400500 chr5B_577522433 chr5B 577522433 C G C G 3 missense_variant MODERATE transcript unique_Triplet 577515571 577522666 7096 3 0.0422773393461105 RFvsST 134922827 638605184 503682358 no 59.9704947212381 TraesCS5B01G400800 chr5B_577659820 chr5B 577659820 T C T C 3 missense_variant MODERATE transcript unique_Triplet 577659757 577660524 768 1 0.130208333333333 RFvsST 134922827 638605184 503682358 no 65.0170530782612 TraesCS5B01G401300 chr5B_578085598 chr5B 578085598 T C T C 3 missense_variant MODERATE transcript non_Triplet 578082415 578087533 5119 1 0.0195350654424692 RFvsST 134922827 638605184 503682358 no 448.836484445621 TraesCS5B01G401900 chr5B_578590330 chr5B 578590330 A G A G 3 synonymous_variant LOW transcript unique_Triplet 578589934 578592497 2564 2 0.078003120124805 RFvsST 134922827 638605184 503682358 no 19.30491841587 TraesCS5B01G401900 chr5B_578591087 chr5B 578591087 G A G A 3 missense_variant MODERATE transcript unique_Triplet 578589934 578592497 2564 2 0.078003120124805 RFvsST 134922827 638605184 503682358 no 19.30491841587 TraesCS5B01G402800 chr5B_579521811 chr5B 579521811 C T C T 3 synonymous_variant LOW transcript non_Triplet 579520053 579522225 2173 1 0.0460193281178095 RFvsST 134922827 638605184 503682358 no 254.287237260659 TraesCS5B01G403000 chr5B_579807658 chr5B 579807658 C T C T 3 missense_variant MODERATE transcript non_Triplet 579807353 579810453 3101 1 0.0322476620445018 RFvsST 134922827 638605184 503682358 no 256.443794200189 TraesCS5B01G403400 chr5B_580103316 chr5B 580103316 A A C C 4 missense_variant MODERATE transcript unique_Triplet 580100558 580104217 3660 3 0.0819672131147541 RFvsST 134922827 638605184 503682358 no 40.0258421124816 TraesCS5B01G403400 chr5B_580103322 chr5B 580103322 C C T T 4 splice_region_variant&intron_variant LOW transcript unique_Triplet 580100558 580104217 3660 3 0.0819672131147541 RFvsST 134922827 638605184 503682358 no 40.0258421124816 TraesCS5B01G403400 chr5B_580103443 chr5B 580103443 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 580100558 580104217 3660 3 0.0819672131147541 RFvsST 134922827 638605184 503682358 no 40.0258421124816 TraesCS5B01G404800 chr5B_580686489 chr5B 580686489 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 580681606 580685526 3921 2 0.0510073960724305 RFvsST 134922827 638605184 503682358 no 11.8231409712432 TraesCS5B01G404800 chr5B_580686304 chr5B 580686304 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 580681606 580685526 3921 2 0.0510073960724305 RFvsST 134922827 638605184 503682358 no 11.8231409712432 TraesCS5B01G404900 chr5B_580689888 chr5B 580689888 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 580686553 580692831 6279 1 0.0159261028826246 RFvsST 134922827 638605184 503682358 no 123.699922684527 TraesCS5B01G405900 chr5B_581709789 chr5B 581709789 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 581709043 581710573 1531 1 0.0653167864141084 RFvsST 134922827 638605184 503682358 no 127.508270886516 TraesCS5B01G407400 chr5B_583203076 chr5B 583203076 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 583203082 583203618 537 2 0.37243947858473 RFvsST 134922827 638605184 503682358 no 10911.6302653675 TraesCS5B01G407400 chr5B_583202994 chr5B 583202994 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 583203082 583203618 537 2 0.37243947858473 RFvsST 134922827 638605184 503682358 no 10911.6302653675 TraesCS5B01G407500 chr5B_583204669 chr5B 583204669 G G T T 4 synonymous_variant LOW transcript unique_Triplet 583204556 583209576 5021 2 0.0398327026488747 RFvsST 134922827 638605184 503682358 no 11.6427945395517 TraesCS5B01G407500 chr5B_583209604 chr5B 583209604 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 583204556 583209576 5021 2 0.0398327026488747 RFvsST 134922827 638605184 503682358 no 11.6427945395517 TraesCS5B01G409900 chr5B_585000798 chr5B 585000798 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 585000383 585001513 1131 1 0.0884173297966401 RFvsST 134922827 638605184 503682358 no 184.676590741368 TraesCS5B01G410400 chr5B_585754205 chr5B 585754205 G G A A 4 missense_variant MODERATE transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G410400 chr5B_585754034 chr5B 585754034 C C T T 4 synonymous_variant LOW transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G410400 chr5B_585753479 chr5B 585753479 A A C C 4 synonymous_variant LOW transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G410400 chr5B_585752211 chr5B 585752211 G G C C 4 missense_variant MODERATE transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G410400 chr5B_585752377 chr5B 585752377 C C T T 4 synonymous_variant LOW transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G410400 chr5B_585752376 chr5B 585752376 G G A A 4 missense_variant MODERATE transcript unique_Triplet 585751880 585754921 3042 6 0.19723865877712 RFvsST 134922827 638605184 503682358 no 164.693475941203 TraesCS5B01G412000 chr5B_586875120 chr5B 586875120 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 586874924 586876521 1598 2 0.125156445556946 RFvsST 134922827 638605184 503682358 no 102.568389705046 TraesCS5B01G412000 chr5B_586875042 chr5B 586875042 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 586874924 586876521 1598 2 0.125156445556946 RFvsST 134922827 638605184 503682358 no 102.568389705046 TraesCS5B01G412200 chr5B_587072268 chr5B 587072268 T T A A 4 missense_variant MODERATE transcript unique_Triplet 587069006 587073000 3995 1 0.0250312891113892 RFvsST 134922827 638605184 503682358 no 276.271499204401 TraesCS5B01G413300 chr5B_588400104 chr5B 588400104 C C T T 4 missense_variant MODERATE transcript unique_Triplet 588397126 588400489 3364 1 0.0297265160523187 RFvsST 134922827 638605184 503682358 no 755.08023132194 TraesCS5B01G413800 chr5B_588521403 chr5B 588521403 C C T T 4 synonymous_variant LOW transcript unique_Triplet 588521203 588524531 3329 1 0.0300390507659958 RFvsST 134922827 638605184 503682358 no 895.35105471034 TraesCS5B01G414000 chr5B_588645208 chr5B 588645208 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 588645472 588648723 3252 2 0.0615006150061501 RFvsST 134922827 638605184 503682358 no 1870.29691396008 TraesCS5B01G414000 chr5B_588648789 chr5B 588648789 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 588645472 588648723 3252 2 0.0615006150061501 RFvsST 134922827 638605184 503682358 no 1870.29691396008 TraesCS5B01G415000 chr5B_589228685 chr5B 589228685 C C T T 4 intron_variant MODIFIER transcript non_Triplet 589228215 589230908 2694 4 0.148478099480327 RFvsST 134922827 638605184 503682358 no 504.429440233465 TraesCS5B01G415000 chr5B_589228287 chr5B 589228287 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 589228215 589230908 2694 4 0.148478099480327 RFvsST 134922827 638605184 503682358 no 504.429440233465 TraesCS5B01G415000 chr5B_589228458 chr5B 589228458 C C T T 4 missense_variant MODERATE transcript non_Triplet 589228215 589230908 2694 4 0.148478099480327 RFvsST 134922827 638605184 503682358 no 504.429440233465 TraesCS5B01G415000 chr5B_589230615 chr5B 589230615 G G C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 589228215 589230908 2694 4 0.148478099480327 RFvsST 134922827 638605184 503682358 no 504.429440233465 TraesCS5B01G416400 chr5B_591108903 chr5B 591108903 T T G G 4 synonymous_variant LOW transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591107980 chr5B 591107980 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591108859 chr5B 591108859 A A G G 4 missense_variant MODERATE transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591108051 chr5B 591108051 T T G G 4 missense_variant MODERATE transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591109063 chr5B 591109063 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591108617 chr5B 591108617 G G C C 4 missense_variant MODERATE transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591108860 chr5B 591108860 A A G G 4 missense_variant MODERATE transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416400 chr5B_591108927 chr5B 591108927 T T C C 4 synonymous_variant LOW transcript unique_Triplet 591106509 591109343 2835 8 0.282186948853616 RFvsST 134922827 638605184 503682358 no 67.6154750111872 TraesCS5B01G416600 chr5B_591195082 chr5B 591195082 G G A A 4 synonymous_variant LOW transcript unique_Triplet 591190636 591195837 5202 5 0.0961168781237985 RFvsST 134922827 638605184 503682358 no 154.39681648889 TraesCS5B01G416600 chr5B_591192039 chr5B 591192039 T T C C 4 missense_variant MODERATE transcript unique_Triplet 591190636 591195837 5202 5 0.0961168781237985 RFvsST 134922827 638605184 503682358 no 154.39681648889 TraesCS5B01G416600 chr5B_591195084 chr5B 591195084 C C T T 4 missense_variant MODERATE transcript unique_Triplet 591190636 591195837 5202 5 0.0961168781237985 RFvsST 134922827 638605184 503682358 no 154.39681648889 TraesCS5B01G416600 chr5B_591192125 chr5B 591192125 A A G G 4 missense_variant MODERATE transcript unique_Triplet 591190636 591195837 5202 5 0.0961168781237985 RFvsST 134922827 638605184 503682358 no 154.39681648889 TraesCS5B01G416600 chr5B_591192103 chr5B 591192103 C C A A 4 synonymous_variant LOW transcript unique_Triplet 591190636 591195837 5202 5 0.0961168781237985 RFvsST 134922827 638605184 503682358 no 154.39681648889 TraesCS5B01G416700 chr5B_591486954 chr5B 591486954 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 591481272 591486846 5575 2 0.0358744394618834 RFvsST 134922827 638605184 503682358 no 85.2535589274835 TraesCS5B01G416700 chr5B_591487046 chr5B 591487046 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 591481272 591486846 5575 2 0.0358744394618834 RFvsST 134922827 638605184 503682358 no 85.2535589274835 TraesCS5B01G416800 chr5B_591523188 chr5B 591523188 A A T T 4 missense_variant MODERATE transcript unique_Triplet 591521761 591524265 2505 2 0.0798403193612774 RFvsST 134922827 638605184 503682358 no 184.942005969189 TraesCS5B01G416800 chr5B_591522741 chr5B 591522741 G G A A 4 missense_variant MODERATE transcript unique_Triplet 591521761 591524265 2505 2 0.0798403193612774 RFvsST 134922827 638605184 503682358 no 184.942005969189 TraesCS5B01G418600 chr5B_594867684 chr5B 594867684 T T C C 4 synonymous_variant LOW transcript unique_Triplet 594867100 594871945 4846 1 0.0206355757325629 RFvsST 134922827 638605184 503682358 no 135.702668141943 TraesCS5B01G419800 chr5B_595622515 chr5B 595622515 C C T T 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 595622302 595623074 773 2 0.258732212160414 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G419800 chr5B_595621173 chr5B 595621173 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 595622302 595623074 773 2 0.258732212160414 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G420200 chr5B_595662002 chr5B 595662002 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 595659919 595661481 1563 1 0.0639795265515035 RFvsST 134922827 638605184 503682358 no No_match TraesCS5B01G484700 chr5B_656228738 chr5B 656228738 C G C G 3 missense_variant MODERATE transcript unique_Triplet 656228474 656232757 4284 3 0.0700280112044818 RFvsST 610661730 713014293 102352564 no 30.7918549735452 TraesCS5B01G484700 chr5B_656228741 chr5B 656228741 A G A G 3 synonymous_variant LOW transcript unique_Triplet 656228474 656232757 4284 3 0.0700280112044818 RFvsST 610661730 713014293 102352564 no 30.7918549735452 TraesCS5B01G484700 chr5B_656232891 chr5B 656232891 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 656228474 656232757 4284 3 0.0700280112044818 RFvsST 610661730 713014293 102352564 no 30.7918549735452 TraesCS5B01G484800 chr5B_656255204 chr5B 656255204 T C T C 3 missense_variant MODERATE transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G484800 chr5B_656257585 chr5B 656257585 C G C G 3 missense_variant MODERATE transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G484800 chr5B_656259758 chr5B 656259758 T C T C 3 missense_variant MODERATE transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G484800 chr5B_656259690 chr5B 656259690 A G A G 3 synonymous_variant LOW transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G484800 chr5B_656257418 chr5B 656257418 C T C T 3 missense_variant MODERATE transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G484800 chr5B_656259988 chr5B 656259988 A G A G 3 missense_variant MODERATE transcript unique_Triplet 656251427 656260704 9278 6 0.0646691097219228 RFvsST 610661730 713014293 102352564 no 249.530351534643 TraesCS5B01G485400 chr5B_656805834 chr5B 656805834 C A C A 3 missense_variant MODERATE transcript non_Triplet 656805157 656806607 1451 2 0.137835975189524 RFvsST 610661730 713014293 102352564 no 55.130214600182 TraesCS5B01G485400 chr5B_656806125 chr5B 656806125 A G A G 3 missense_variant MODERATE transcript non_Triplet 656805157 656806607 1451 2 0.137835975189524 RFvsST 610661730 713014293 102352564 no 55.130214600182 TraesCS5B01G485500 chr5B_656840295 chr5B 656840295 G A G A 3 synonymous_variant LOW transcript unique_Triplet 656839201 656840685 1485 1 0.0673400673400673 RFvsST 610661730 713014293 102352564 no 183.629795514258 TraesCS5B01G485600 chr5B_656906758 chr5B 656906758 T C T C 3 synonymous_variant LOW transcript unique_Triplet 656904253 656909974 5722 5 0.0873820342537574 RFvsST 610661730 713014293 102352564 no 414.772612573404 TraesCS5B01G485600 chr5B_656905209 chr5B 656905209 C T C T 3 missense_variant MODERATE transcript unique_Triplet 656904253 656909974 5722 5 0.0873820342537574 RFvsST 610661730 713014293 102352564 no 414.772612573404 TraesCS5B01G485600 chr5B_656905462 chr5B 656905462 C A C A 3 missense_variant MODERATE transcript unique_Triplet 656904253 656909974 5722 5 0.0873820342537574 RFvsST 610661730 713014293 102352564 no 414.772612573404 TraesCS5B01G485600 chr5B_656908816 chr5B 656908816 C T C T 3 missense_variant MODERATE transcript unique_Triplet 656904253 656909974 5722 5 0.0873820342537574 RFvsST 610661730 713014293 102352564 no 414.772612573404 TraesCS5B01G485600 chr5B_656907203 chr5B 656907203 T A T A 3 missense_variant MODERATE transcript unique_Triplet 656904253 656909974 5722 5 0.0873820342537574 RFvsST 610661730 713014293 102352564 no 414.772612573404 TraesCS5B01G485700 chr5B_656925597 chr5B 656925597 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 656925498 656927176 1679 1 0.0595592614651578 RFvsST 610661730 713014293 102352564 no 40.8875260538929 TraesCS5B01G486300 chr5B_657714245 chr5B 657714245 C T C T 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657714198 chr5B 657714198 A G A G 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657711708 chr5B 657711708 A G A G 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657713776 chr5B 657713776 C T C T 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657715364 chr5B 657715364 T G T G 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657710462 chr5B 657710462 T G T G 3 missense_variant MODERATE transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657715355 chr5B 657715355 G A G A 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657711086 chr5B 657711086 C G C G 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657710936 chr5B 657710936 G A G A 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657711042 chr5B 657711042 G A G A 3 missense_variant MODERATE transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486300 chr5B_657714439 chr5B 657714439 C T C T 3 synonymous_variant LOW transcript unique_Triplet 657710115 657715379 5265 11 0.208926875593542 RFvsST 610661730 713014293 102352564 no 34.2945522767561 TraesCS5B01G486600 chr5B_657884215 chr5B 657884215 A G A G 3 synonymous_variant LOW transcript non_Triplet 657884023 657887758 3736 4 0.107066381156317 RFvsST 610661730 713014293 102352564 no 63.010596190126 TraesCS5B01G486600 chr5B_657884461 chr5B 657884461 C T C T 3 missense_variant MODERATE transcript non_Triplet 657884023 657887758 3736 4 0.107066381156317 RFvsST 610661730 713014293 102352564 no 63.010596190126 TraesCS5B01G486600 chr5B_657884134 chr5B 657884134 A C A C 3 missense_variant MODERATE transcript non_Triplet 657884023 657887758 3736 4 0.107066381156317 RFvsST 610661730 713014293 102352564 no 63.010596190126 TraesCS5B01G486600 chr5B_657883812 chr5B 657883812 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 657884023 657887758 3736 4 0.107066381156317 RFvsST 610661730 713014293 102352564 no 63.010596190126 TraesCS5B01G486900 chr5B_658092585 chr5B 658092585 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 658092703 658095066 2364 1 0.0423011844331641 RFvsST 610661730 713014293 102352564 no 35.1976926952663 TraesCS5B01G488000 chr5B_658616267 chr5B 658616267 G C G C 3 synonymous_variant LOW transcript non_Triplet 658610858 658616299 5442 5 0.0918779860345461 RFvsST 610661730 713014293 102352564 no 32.7205685190055 TraesCS5B01G488000 chr5B_658611292 chr5B 658611292 A G A G 3 missense_variant MODERATE transcript non_Triplet 658610858 658616299 5442 5 0.0918779860345461 RFvsST 610661730 713014293 102352564 no 32.7205685190055 TraesCS5B01G488000 chr5B_658611297 chr5B 658611297 C G C G 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 658610858 658616299 5442 5 0.0918779860345461 RFvsST 610661730 713014293 102352564 no 32.7205685190055 TraesCS5B01G488000 chr5B_658610748 chr5B 658610748 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 658610858 658616299 5442 5 0.0918779860345461 RFvsST 610661730 713014293 102352564 no 32.7205685190055 TraesCS5B01G488000 chr5B_658616338 chr5B 658616338 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 658610858 658616299 5442 5 0.0918779860345461 RFvsST 610661730 713014293 102352564 no 32.7205685190055 TraesCS5B01G488200 chr5B_658759750 chr5B 658759750 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 658759857 658761050 1194 1 0.0837520938023451 RFvsST 610661730 713014293 102352564 no 162.78162885914 TraesCS5B01G491900 chr5B_660134289 chr5B 660134289 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 660136861 660141412 4552 1 0.0219683655536028 RFvsST 610661730 713014293 102352564 no 75.4101961223141 TraesCS5B01G494200 chr5B_661905191 chr5B 661905191 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494200 chr5B_661906702 chr5B 661906702 A G A G 3 missense_variant MODERATE transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494200 chr5B_661908801 chr5B 661908801 C T C T 3 missense_variant MODERATE transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494200 chr5B_661906861 chr5B 661906861 T A T A 3 missense_variant MODERATE transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494200 chr5B_661906877 chr5B 661906877 C T C T 3 missense_variant MODERATE transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494200 chr5B_661906847 chr5B 661906847 T C T C 3 missense_variant MODERATE transcript unique_Triplet 661905709 661909243 3535 6 0.16973125884017 RFvsST 610661730 713014293 102352564 no 332.457269575889 TraesCS5B01G494300 chr5B_662026559 chr5B 662026559 C T C T 3 synonymous_variant LOW transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662030433 chr5B 662030433 C C T T 4 missense_variant MODERATE transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662030405 chr5B 662030405 G A G A 3 missense_variant MODERATE transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662028540 chr5B 662028540 C T C T 3 missense_variant MODERATE transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662030078 chr5B 662030078 T C T C 3 synonymous_variant LOW transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662029304 chr5B 662029304 C T C T 3 missense_variant MODERATE transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662024958 chr5B 662024958 A G A G 3 synonymous_variant LOW transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662024120 chr5B 662024120 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662028562 chr5B 662028562 C T C T 3 synonymous_variant LOW transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494300 chr5B_662030069 chr5B 662030069 G A G A 3 missense_variant MODERATE transcript non_Triplet 662024251 662031935 7685 10 0.130123617436565 RFvsST 610661730 713014293 102352564 no 520.934432850013 TraesCS5B01G494500 chr5B_662454581 chr5B 662454581 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 662454135 662456108 1974 3 0.151975683890578 RFvsST 610661730 713014293 102352564 no 274.252562942233 TraesCS5B01G494500 chr5B_662455799 chr5B 662455799 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 662454135 662456108 1974 3 0.151975683890578 RFvsST 610661730 713014293 102352564 no 274.252562942233 TraesCS5B01G494500 chr5B_662455659 chr5B 662455659 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 662454135 662456108 1974 3 0.151975683890578 RFvsST 610661730 713014293 102352564 no 274.252562942233 TraesCS5B01G494600 chr5B_662458926 chr5B 662458926 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 662456601 662459174 2574 4 0.155400155400155 RFvsST 610661730 713014293 102352564 no 105.500530404631 TraesCS5B01G494600 chr5B_662456856 chr5B 662456856 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 662456601 662459174 2574 4 0.155400155400155 RFvsST 610661730 713014293 102352564 no 105.500530404631 TraesCS5B01G494600 chr5B_662459184 chr5B 662459184 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 662456601 662459174 2574 4 0.155400155400155 RFvsST 610661730 713014293 102352564 no 105.500530404631 TraesCS5B01G494600 chr5B_662456833 chr5B 662456833 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 662456601 662459174 2574 4 0.155400155400155 RFvsST 610661730 713014293 102352564 no 105.500530404631 TraesCS5B01G500100 chr5B_666209504 chr5B 666209504 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 666202212 666206894 4683 2 0.0427076660260517 RFvsST 610661730 713014293 102352564 no 218.081085215185 TraesCS5B01G500100 chr5B_666206486 chr5B 666206486 C C G G 4 synonymous_variant LOW transcript unique_Triplet 666202212 666206894 4683 2 0.0427076660260517 RFvsST 610661730 713014293 102352564 no 218.081085215185 TraesCS5B01G500200 chr5B_666209213 chr5B 666209213 C C T T 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500200 chr5B_666208994 chr5B 666208994 C C T T 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500200 chr5B_666209246 chr5B 666209246 A A G G 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500200 chr5B_666208781 chr5B 666208781 C C T T 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500200 chr5B_666209099 chr5B 666209099 T T C C 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500200 chr5B_666209207 chr5B 666209207 A A G G 4 synonymous_variant LOW transcript unique_Triplet 666207065 666209291 2227 6 0.269420745397396 RFvsST 610661730 713014293 102352564 no 475.804996631539 TraesCS5B01G500500 chr5B_667675690 chr5B 667675690 C C T T 4 synonymous_variant LOW transcript unique_Triplet 667672242 667676189 3948 3 0.0759878419452888 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G500500 chr5B_667675711 chr5B 667675711 T T C C 4 synonymous_variant LOW transcript unique_Triplet 667672242 667676189 3948 3 0.0759878419452888 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G500500 chr5B_667672354 chr5B 667672354 C C T T 4 missense_variant MODERATE transcript unique_Triplet 667672242 667676189 3948 3 0.0759878419452888 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G500600 chr5B_667679232 chr5B 667679232 G G A A 4 synonymous_variant LOW transcript unique_Triplet 667676880 667679483 2604 2 0.0768049155145929 RFvsST 610661730 713014293 102352564 no 3.29832726566858 TraesCS5B01G500600 chr5B_667679309 chr5B 667679309 C C T T 4 missense_variant MODERATE transcript unique_Triplet 667676880 667679483 2604 2 0.0768049155145929 RFvsST 610661730 713014293 102352564 no 3.29832726566858 TraesCS5B01G500800 chr5B_668188143 chr5B 668188143 G G T T 4 missense_variant MODERATE transcript unique_Triplet 668186597 668190808 4212 2 0.0474833808167142 RFvsST 610661730 713014293 102352564 no 38.9830888285797 TraesCS5B01G500800 chr5B_668190649 chr5B 668190649 T T C C 4 synonymous_variant LOW transcript unique_Triplet 668186597 668190808 4212 2 0.0474833808167142 RFvsST 610661730 713014293 102352564 no 38.9830888285797 TraesCS5B01G500900 chr5B_668198283 chr5B 668198283 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 668195578 668197488 1911 2 0.10465724751439 RFvsST 610661730 713014293 102352564 no 19.681749026367 TraesCS5B01G500900 chr5B_668194869 chr5B 668194869 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 668195578 668197488 1911 2 0.10465724751439 RFvsST 610661730 713014293 102352564 no 19.681749026367 TraesCS5B01G501200 chr5B_668473765 chr5B 668473765 C C G G 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668473987 chr5B 668473987 C C G G 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668470762 chr5B 668470762 T T C C 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668467381 chr5B 668467381 A A C C 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668473777 chr5B 668473777 A A C C 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668474076 chr5B 668474076 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G501200 chr5B_668472292 chr5B 668472292 A A T T 4 missense_variant MODERATE transcript unique_Triplet 668467268 668474055 6788 7 0.103123158515027 RFvsST 610661730 713014293 102352564 no 166.134128307027 TraesCS5B01G502000 chr5B_669295140 chr5B 669295140 C C T T 4 synonymous_variant LOW transcript unique_Triplet 669293511 669303360 9850 1 0.0101522842639594 RFvsST 610661730 713014293 102352564 no 89.9036880941589 TraesCS5B01G502300 chr5B_669481731 chr5B 669481731 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 669481745 669483308 1564 1 0.0639386189258312 RFvsST 610661730 713014293 102352564 no 123.739996678784 TraesCS5B01G503200 chr5B_669898310 chr5B 669898310 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 669895729 669898013 2285 3 0.131291028446389 RFvsST 610661730 713014293 102352564 no 2252.64455531799 TraesCS5B01G503200 chr5B_669895760 chr5B 669895760 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 669895729 669898013 2285 3 0.131291028446389 RFvsST 610661730 713014293 102352564 no 2252.64455531799 TraesCS5B01G503200 chr5B_669898331 chr5B 669898331 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 669895729 669898013 2285 3 0.131291028446389 RFvsST 610661730 713014293 102352564 no 2252.64455531799 TraesCS5B01G503800 chr5B_670114224 chr5B 670114224 A A G G 4 synonymous_variant LOW transcript unique_Triplet 670114084 670116076 1993 1 0.0501756146512795 RFvsST 610661730 713014293 102352564 no 125.206319037077 TraesCS5B01G504900 chr5B_670835084 chr5B 670835084 C C T T 4 missense_variant MODERATE transcript unique_Triplet 670828258 670835289 7032 3 0.0426621160409556 RFvsST 610661730 713014293 102352564 no 1622.07555791576 TraesCS5B01G504900 chr5B_670828650 chr5B 670828650 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 670828258 670835289 7032 3 0.0426621160409556 RFvsST 610661730 713014293 102352564 no 1622.07555791576 TraesCS5B01G504900 chr5B_670828587 chr5B 670828587 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 670828258 670835289 7032 3 0.0426621160409556 RFvsST 610661730 713014293 102352564 no 1622.07555791576 TraesCS5B01G505200 chr5B_671094894 chr5B 671094894 G G C C 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505200 chr5B_671094885 chr5B 671094885 T T C C 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505200 chr5B_671095068 chr5B 671095068 A A G G 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505200 chr5B_671094963 chr5B 671094963 G G A A 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505200 chr5B_671094553 chr5B 671094553 T T C C 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505200 chr5B_671094511 chr5B 671094511 C C T T 4 synonymous_variant LOW transcript unique_Triplet 671091552 671095092 3541 6 0.169443659983056 RFvsST 610661730 713014293 102352564 no 85.1846397101502 TraesCS5B01G505300 chr5B_671126161 chr5B 671126161 C C G G 4 synonymous_variant LOW transcript unique_Triplet 671126144 671128945 2802 1 0.0356887937187723 RFvsST 610661730 713014293 102352564 no 704.627537703773 TraesCS5B01G505400 chr5B_671193131 chr5B 671193131 C C T T 4 missense_variant MODERATE transcript unique_Triplet 671192853 671196807 3955 3 0.0758533501896334 RFvsST 610661730 713014293 102352564 no 246.1835006638 TraesCS5B01G505400 chr5B_671193090 chr5B 671193090 C C T T 4 synonymous_variant LOW transcript unique_Triplet 671192853 671196807 3955 3 0.0758533501896334 RFvsST 610661730 713014293 102352564 no 246.1835006638 TraesCS5B01G505400 chr5B_671192861 chr5B 671192861 C C A A 4 missense_variant MODERATE transcript unique_Triplet 671192853 671196807 3955 3 0.0758533501896334 RFvsST 610661730 713014293 102352564 no 246.1835006638 TraesCS5B01G505500 chr5B_671301137 chr5B 671301137 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 671295153 671298157 3005 1 0.0332778702163062 RFvsST 610661730 713014293 102352564 no 34.2030092416856 TraesCS5B01G508800 chr5B_673989371 chr5B 673989371 C C A A 4 missense_variant MODERATE transcript unique_Triplet 673988752 673989785 1034 1 0.0967117988394584 RFvsST 610661730 713014293 102352564 no 105.263467427482 TraesCS5B01G513800 chr5B_678918017 chr5B 678918017 C C G G 4 missense_variant MODERATE transcript non_Triplet 678915972 678918877 2906 4 0.137646249139711 RFvsST 610661730 713014293 102352564 no 297.46059450976 TraesCS5B01G513800 chr5B_678917897 chr5B 678917897 T T C C 4 missense_variant MODERATE transcript non_Triplet 678915972 678918877 2906 4 0.137646249139711 RFvsST 610661730 713014293 102352564 no 297.46059450976 TraesCS5B01G513800 chr5B_678917400 chr5B 678917400 A A G G 4 synonymous_variant LOW transcript non_Triplet 678915972 678918877 2906 4 0.137646249139711 RFvsST 610661730 713014293 102352564 no 297.46059450976 TraesCS5B01G513800 chr5B_678917241 chr5B 678917241 G G C C 4 synonymous_variant LOW transcript non_Triplet 678915972 678918877 2906 4 0.137646249139711 RFvsST 610661730 713014293 102352564 no 297.46059450976 TraesCS5B01G514200 chr5B_679325908 chr5B 679325908 C C T T 4 missense_variant MODERATE transcript unique_Triplet 679325505 679326401 897 3 0.334448160535117 RFvsST 610661730 713014293 102352564 no 146.073391395607 TraesCS5B01G514200 chr5B_679325523 chr5B 679325523 G G A A 4 missense_variant MODERATE transcript unique_Triplet 679325505 679326401 897 3 0.334448160535117 RFvsST 610661730 713014293 102352564 no 146.073391395607 TraesCS5B01G514200 chr5B_679325864 chr5B 679325864 C C T T 4 synonymous_variant LOW transcript unique_Triplet 679325505 679326401 897 3 0.334448160535117 RFvsST 610661730 713014293 102352564 no 146.073391395607 TraesCS5B01G514300 chr5B_679346989 chr5B 679346989 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 679343774 679344800 1027 1 0.0973709834469328 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G514400 chr5B_679352349 chr5B 679352349 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679348886 chr5B 679348886 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679348768 chr5B 679348768 C C T T 4 missense_variant MODERATE transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679359826 chr5B 679359826 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679348127 chr5B 679348127 G G C C 4 missense_variant MODERATE transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679356485 chr5B 679356485 G G A A 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679347445 chr5B 679347445 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679357435 chr5B 679357435 C C A A 4 missense_variant MODERATE transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679348727 chr5B 679348727 T T C C 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679347871 chr5B 679347871 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G514400 chr5B_679348850 chr5B 679348850 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679347061 679357591 10531 11 0.104453518184408 RFvsST 610661730 713014293 102352564 no 576.115894200865 TraesCS5B01G515100 chr5B_679677679 chr5B 679677679 G G C C 4 synonymous_variant LOW transcript unique_Triplet 679677184 679677997 814 2 0.245700245700246 RFvsST 610661730 713014293 102352564 no 1264.71471547959 TraesCS5B01G515100 chr5B_679677740 chr5B 679677740 A A G G 4 missense_variant MODERATE transcript unique_Triplet 679677184 679677997 814 2 0.245700245700246 RFvsST 610661730 713014293 102352564 no 1264.71471547959 TraesCS5B01G515200 chr5B_679687040 chr5B 679687040 G G A A 4 missense_variant MODERATE transcript unique_Triplet 679680416 679688318 7903 3 0.0379602682525623 RFvsST 610661730 713014293 102352564 no 66.7438220543178 TraesCS5B01G515200 chr5B_679681445 chr5B 679681445 C C G G 4 missense_variant MODERATE transcript unique_Triplet 679680416 679688318 7903 3 0.0379602682525623 RFvsST 610661730 713014293 102352564 no 66.7438220543178 TraesCS5B01G515200 chr5B_679684820 chr5B 679684820 A A G G 4 synonymous_variant LOW transcript unique_Triplet 679680416 679688318 7903 3 0.0379602682525623 RFvsST 610661730 713014293 102352564 no 66.7438220543178 TraesCS5B01G515300 chr5B_679687636 chr5B 679687636 C C T T 4 splice_region_variant&intron_variant LOW transcript non_Triplet 679687630 679695826 8197 1 0.0121995852141027 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G515800 chr5B_680342656 chr5B 680342656 C C T T 4 missense_variant MODERATE transcript unique_Triplet 680336485 680342951 6467 3 0.0463893613731251 RFvsST 610661730 713014293 102352564 no 54.7382538437267 TraesCS5B01G515800 chr5B_680338988 chr5B 680338988 T T G G 4 missense_variant MODERATE transcript unique_Triplet 680336485 680342951 6467 3 0.0463893613731251 RFvsST 610661730 713014293 102352564 no 54.7382538437267 TraesCS5B01G515800 chr5B_680336506 chr5B 680336506 A A G G 4 synonymous_variant LOW transcript unique_Triplet 680336485 680342951 6467 3 0.0463893613731251 RFvsST 610661730 713014293 102352564 no 54.7382538437267 TraesCS5B01G515900 chr5B_680352629 chr5B 680352629 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 680345728 680352875 7148 3 0.0419697817571349 RFvsST 610661730 713014293 102352564 no 83.3827703306451 TraesCS5B01G515900 chr5B_680347003 chr5B 680347003 G G A A 4 synonymous_variant LOW transcript unique_Triplet 680345728 680352875 7148 3 0.0419697817571349 RFvsST 610661730 713014293 102352564 no 83.3827703306451 TraesCS5B01G515900 chr5B_680351284 chr5B 680351284 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 680345728 680352875 7148 3 0.0419697817571349 RFvsST 610661730 713014293 102352564 no 83.3827703306451 TraesCS5B01G517400 chr5B_680853089 chr5B 680853089 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 680853099 680858332 5234 1 0.019105846388995 RFvsST 610661730 713014293 102352564 no 86.3629639521029 TraesCS5B01G519900 chr5B_682398853 chr5B 682398853 C C T T 4 synonymous_variant LOW transcript unique_Triplet 682398494 682399882 1389 3 0.215982721382289 RFvsST 610661730 713014293 102352564 no 53.2296061561891 TraesCS5B01G519900 chr5B_682398908 chr5B 682398908 A A G G 4 missense_variant MODERATE transcript unique_Triplet 682398494 682399882 1389 3 0.215982721382289 RFvsST 610661730 713014293 102352564 no 53.2296061561891 TraesCS5B01G519900 chr5B_682398568 chr5B 682398568 G G A A 4 synonymous_variant LOW transcript unique_Triplet 682398494 682399882 1389 3 0.215982721382289 RFvsST 610661730 713014293 102352564 no 53.2296061561891 TraesCS5B01G520500 chr5B_682699266 chr5B 682699266 A A G G 4 synonymous_variant LOW transcript unique_Triplet 682699083 682703736 4654 2 0.0429737859905458 RFvsST 610661730 713014293 102352564 no 35.2409660220619 TraesCS5B01G520500 chr5B_682703653 chr5B 682703653 A A C C 4 synonymous_variant LOW transcript unique_Triplet 682699083 682703736 4654 2 0.0429737859905458 RFvsST 610661730 713014293 102352564 no 35.2409660220619 TraesCS5B01G520600 chr5B_682818751 chr5B 682818751 C C A A 4 missense_variant MODERATE transcript non_Triplet 682817804 682820398 2595 2 0.0770712909441233 RFvsST 610661730 713014293 102352564 no 467.911414269348 TraesCS5B01G520600 chr5B_682820302 chr5B 682820302 G G C C 4 synonymous_variant LOW transcript non_Triplet 682817804 682820398 2595 2 0.0770712909441233 RFvsST 610661730 713014293 102352564 no 467.911414269348 TraesCS5B01G520700 chr5B_682838323 chr5B 682838323 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682838457 chr5B 682838457 C C T T 4 missense_variant MODERATE transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682843110 chr5B 682843110 T T A A 4 synonymous_variant LOW transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682843073 chr5B 682843073 C C G G 4 missense_variant MODERATE transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682842891 chr5B 682842891 G G T T 4 missense_variant MODERATE transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682842269 chr5B 682842269 G G A A 4 synonymous_variant LOW transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682838416 chr5B 682838416 T T C C 4 synonymous_variant LOW transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682843075 chr5B 682843075 T T C C 4 missense_variant MODERATE transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682842272 chr5B 682842272 A A G G 4 synonymous_variant LOW transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G520700 chr5B_682843094 chr5B 682843094 T T C C 4 missense_variant MODERATE transcript unique_Triplet 682838316 682843295 4980 10 0.200803212851406 RFvsST 610661730 713014293 102352564 no 827.137253777465 TraesCS5B01G521100 chr5B_683112009 chr5B 683112009 C C T T 4 missense_variant MODERATE transcript non_Triplet 683109159 683120218 11060 1 0.00904159132007233 RFvsST 610661730 713014293 102352564 no 504.86049643819 TraesCS5B01G521200 chr5B_683143881 chr5B 683143881 C C T T 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 683140395 683147990 7596 4 0.0526592943654555 RFvsST 610661730 713014293 102352564 no 491.210645542263 TraesCS5B01G521200 chr5B_683143060 chr5B 683143060 T T C C 4 missense_variant MODERATE transcript non_Triplet 683140395 683147990 7596 4 0.0526592943654555 RFvsST 610661730 713014293 102352564 no 491.210645542263 TraesCS5B01G521200 chr5B_683143170 chr5B 683143170 C C T T 4 synonymous_variant LOW transcript non_Triplet 683140395 683147990 7596 4 0.0526592943654555 RFvsST 610661730 713014293 102352564 no 491.210645542263 TraesCS5B01G521200 chr5B_683143677 chr5B 683143677 T T A A 4 missense_variant MODERATE transcript non_Triplet 683140395 683147990 7596 4 0.0526592943654555 RFvsST 610661730 713014293 102352564 no 491.210645542263 TraesCS5B01G521500 chr5B_683519705 chr5B 683519705 C C T T 4 synonymous_variant LOW transcript unique_Triplet 683515626 683520119 4494 4 0.0890075656430797 RFvsST 610661730 713014293 102352564 no 102.061699308637 TraesCS5B01G521500 chr5B_683519386 chr5B 683519386 A A C C 4 missense_variant MODERATE transcript unique_Triplet 683515626 683520119 4494 4 0.0890075656430797 RFvsST 610661730 713014293 102352564 no 102.061699308637 TraesCS5B01G521500 chr5B_683515326 chr5B 683515326 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 683515626 683520119 4494 4 0.0890075656430797 RFvsST 610661730 713014293 102352564 no 102.061699308637 TraesCS5B01G521500 chr5B_683517928 chr5B 683517928 T T A A 4 intron_variant MODIFIER transcript unique_Triplet 683515626 683520119 4494 4 0.0890075656430797 RFvsST 610661730 713014293 102352564 no 102.061699308637 TraesCS5B01G523000 chr5B_684375131 chr5B 684375131 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 684376028 684380956 4929 1 0.0202880908906472 RFvsST 610661730 713014293 102352564 no 3.26068140401429 TraesCS5B01G523400 chr5B_684494988 chr5B 684494988 G G T T 4 missense_variant MODERATE transcript non_Triplet 684494291 684497191 2901 1 0.0344708721130645 RFvsST 610661730 713014293 102352564 no 442.892172887739 TraesCS5B01G525600 chr5B_685431645 chr5B 685431645 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 685432636 685437160 4525 1 0.0220994475138122 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G528200 chr5B_687160888 chr5B 687160888 G G A A 4 missense_variant MODERATE transcript unique_Triplet 687159772 687163280 3509 3 0.085494442861214 RFvsST 610661730 713014293 102352564 no 123.145990915804 TraesCS5B01G528200 chr5B_687160975 chr5B 687160975 C C T T 4 missense_variant MODERATE transcript unique_Triplet 687159772 687163280 3509 3 0.085494442861214 RFvsST 610661730 713014293 102352564 no 123.145990915804 TraesCS5B01G528200 chr5B_687162778 chr5B 687162778 T T C C 4 missense_variant MODERATE transcript unique_Triplet 687159772 687163280 3509 3 0.085494442861214 RFvsST 610661730 713014293 102352564 no 123.145990915804 TraesCS5B01G528300 chr5B_687164848 chr5B 687164848 C C T T 4 synonymous_variant LOW transcript non_Triplet 687164174 687166492 2319 3 0.129366106080207 RFvsST 610661730 713014293 102352564 no 330.645518136106 TraesCS5B01G528300 chr5B_687166066 chr5B 687166066 C C T T 4 synonymous_variant LOW transcript non_Triplet 687164174 687166492 2319 3 0.129366106080207 RFvsST 610661730 713014293 102352564 no 330.645518136106 TraesCS5B01G528300 chr5B_687165718 chr5B 687165718 G G A A 4 synonymous_variant LOW transcript non_Triplet 687164174 687166492 2319 3 0.129366106080207 RFvsST 610661730 713014293 102352564 no 330.645518136106 TraesCS5B01G528800 chr5B_687468934 chr5B 687468934 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 687468048 687469707 1660 4 0.240963855421687 RFvsST 610661730 713014293 102352564 no 356.260627033449 TraesCS5B01G528800 chr5B_687468516 chr5B 687468516 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 687468048 687469707 1660 4 0.240963855421687 RFvsST 610661730 713014293 102352564 no 356.260627033449 TraesCS5B01G528800 chr5B_687469423 chr5B 687469423 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 687468048 687469707 1660 4 0.240963855421687 RFvsST 610661730 713014293 102352564 no 356.260627033449 TraesCS5B01G528800 chr5B_687469272 chr5B 687469272 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 687468048 687469707 1660 4 0.240963855421687 RFvsST 610661730 713014293 102352564 no 356.260627033449 TraesCS5B01G529200 chr5B_687779662 chr5B 687779662 T T C C 4 missense_variant MODERATE transcript non_Triplet 687778718 687790018 11301 1 0.0088487744447394 RFvsST 610661730 713014293 102352564 no 27.2525710378985 TraesCS5B01G529300 chr5B_687798117 chr5B 687798117 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 687798134 687801872 3739 4 0.106980476063118 RFvsST 610661730 713014293 102352564 no 109.399899939147 TraesCS5B01G529300 chr5B_687803502 chr5B 687803502 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 687798134 687801872 3739 4 0.106980476063118 RFvsST 610661730 713014293 102352564 no 109.399899939147 TraesCS5B01G529300 chr5B_687800825 chr5B 687800825 A A T T 4 missense_variant MODERATE transcript unique_Triplet 687798134 687801872 3739 4 0.106980476063118 RFvsST 610661730 713014293 102352564 no 109.399899939147 TraesCS5B01G529300 chr5B_687801801 chr5B 687801801 T T C C 4 synonymous_variant LOW transcript unique_Triplet 687798134 687801872 3739 4 0.106980476063118 RFvsST 610661730 713014293 102352564 no 109.399899939147 TraesCS5B01G529400 chr5B_687800693 chr5B 687800693 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 687804143 687814015 9873 3 0.0303859009419629 RFvsST 610661730 713014293 102352564 no 961.300740991393 TraesCS5B01G529400 chr5B_687813612 chr5B 687813612 C C G G 4 synonymous_variant LOW transcript non_Triplet 687804143 687814015 9873 3 0.0303859009419629 RFvsST 610661730 713014293 102352564 no 961.300740991393 TraesCS5B01G529400 chr5B_687814047 chr5B 687814047 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 687804143 687814015 9873 3 0.0303859009419629 RFvsST 610661730 713014293 102352564 no 961.300740991393 TraesCS5B01G530800 chr5B_689223569 chr5B 689223569 A A G G 4 synonymous_variant LOW transcript unique_Triplet 689223424 689225258 1835 1 0.0544959128065395 RFvsST 610661730 713014293 102352564 no 220.076842192497 TraesCS5B01G531300 chr5B_689374000 chr5B 689374000 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373695 chr5B 689373695 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373638 chr5B 689373638 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373682 chr5B 689373682 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689370922 chr5B 689370922 C C T T 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689371656 chr5B 689371656 C C T T 4 synonymous_variant LOW transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373799 chr5B 689373799 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689372543 chr5B 689372543 C C T T 4 synonymous_variant LOW transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689371288 chr5B 689371288 A A G G 4 synonymous_variant LOW transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689374013 chr5B 689374013 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373845 chr5B 689373845 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531300 chr5B_689373641 chr5B 689373641 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689370166 689373636 3471 12 0.345721694036301 RFvsST 610661730 713014293 102352564 no 21.6079311896145 TraesCS5B01G531400 chr5B_689375972 chr5B 689375972 C C G G 4 synonymous_variant LOW transcript unique_Triplet 689375498 689376583 1086 1 0.0920810313075506 RFvsST 610661730 713014293 102352564 no 710.910623871938 TraesCS5B01G531900 chr5B_689853847 chr5B 689853847 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689850160 689852016 1857 2 0.107700592353258 RFvsST 610661730 713014293 102352564 no 344.04912216332 TraesCS5B01G531900 chr5B_689853478 chr5B 689853478 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 689850160 689852016 1857 2 0.107700592353258 RFvsST 610661730 713014293 102352564 no 344.04912216332 TraesCS5B01G532200 chr5B_689899305 chr5B 689899305 G G A A 4 synonymous_variant LOW transcript non_Triplet 689898601 689900870 2270 5 0.220264317180617 RFvsST 610661730 713014293 102352564 no 186.952757614607 TraesCS5B01G532200 chr5B_689899514 chr5B 689899514 C C T T 4 missense_variant MODERATE transcript non_Triplet 689898601 689900870 2270 5 0.220264317180617 RFvsST 610661730 713014293 102352564 no 186.952757614607 TraesCS5B01G532200 chr5B_689900374 chr5B 689900374 A A G G 4 missense_variant MODERATE transcript non_Triplet 689898601 689900870 2270 5 0.220264317180617 RFvsST 610661730 713014293 102352564 no 186.952757614607 TraesCS5B01G532200 chr5B_689900265 chr5B 689900265 G G C C 4 synonymous_variant LOW transcript non_Triplet 689898601 689900870 2270 5 0.220264317180617 RFvsST 610661730 713014293 102352564 no 186.952757614607 TraesCS5B01G532200 chr5B_689899026 chr5B 689899026 G G A A 4 synonymous_variant LOW transcript non_Triplet 689898601 689900870 2270 5 0.220264317180617 RFvsST 610661730 713014293 102352564 no 186.952757614607 TraesCS5B01G532900 chr5B_690069770 chr5B 690069770 C C G G 4 missense_variant MODERATE transcript unique_Triplet 690069739 690075404 5666 3 0.0529474055771267 RFvsST 610661730 713014293 102352564 no 119.698474144917 TraesCS5B01G532900 chr5B_690073559 chr5B 690073559 G G A A 4 synonymous_variant LOW transcript unique_Triplet 690069739 690075404 5666 3 0.0529474055771267 RFvsST 610661730 713014293 102352564 no 119.698474144917 TraesCS5B01G532900 chr5B_690069721 chr5B 690069721 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 690069739 690075404 5666 3 0.0529474055771267 RFvsST 610661730 713014293 102352564 no 119.698474144917 TraesCS5B01G535000 chr5B_691129667 chr5B 691129667 C C A A 4 intron_variant MODIFIER transcript non_Triplet 691129477 691130435 959 1 0.104275286757039 RFvsST 610661730 713014293 102352564 no 496.332697203008 TraesCS5B01G535400 chr5B_691469613 chr5B 691469613 T T A A 4 missense_variant MODERATE transcript non_Triplet 691459862 691480718 20857 2 0.00958910677470394 RFvsST 610661730 713014293 102352564 no 307.008502852531 TraesCS5B01G535400 chr5B_691477562 chr5B 691477562 G A G A 3 synonymous_variant LOW transcript non_Triplet 691459862 691480718 20857 2 0.00958910677470394 RFvsST 610661730 713014293 102352564 no 307.008502852531 TraesCS5B01G535500 chr5B_691485242 chr5B 691485242 C C T T 4 missense_variant MODERATE transcript non_Triplet 691485152 691506004 20853 1 0.00479547307341869 RFvsST 610661730 713014293 102352564 no 189.466316375033 TraesCS5B01G535900 chr5B_691824077 chr5B 691824077 G T G T 3 missense_variant MODERATE transcript non_Triplet 691823818 691825439 1622 2 0.123304562268804 RFvsST 610661730 713014293 102352564 no 17.2932572447172 TraesCS5B01G535900 chr5B_691824064 chr5B 691824064 C A C A 3 missense_variant MODERATE transcript non_Triplet 691823818 691825439 1622 2 0.123304562268804 RFvsST 610661730 713014293 102352564 no 17.2932572447172 TraesCS5B01G536200 chr5B_692020162 chr5B 692020162 C T C T 3 missense_variant MODERATE transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536200 chr5B_692019724 chr5B 692019724 A C A C 3 synonymous_variant LOW transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536200 chr5B_692018427 chr5B 692018427 G A G A 3 synonymous_variant LOW transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536200 chr5B_692017380 chr5B 692017380 A G A G 3 synonymous_variant LOW transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536200 chr5B_692019802 chr5B 692019802 C T C T 3 synonymous_variant LOW transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536200 chr5B_692014204 chr5B 692014204 T C T C 3 missense_variant MODERATE transcript non_Triplet 692013040 692020848 7809 6 0.0768344218209758 RFvsST 610661730 713014293 102352564 no 68.6668245178329 TraesCS5B01G536300 chr5B_692210682 chr5B 692210682 A G A G 3 missense_variant MODERATE transcript unique_Triplet 692209977 692218265 8289 2 0.0241283628905779 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G536300 chr5B_692210765 chr5B 692210765 A G A G 3 synonymous_variant LOW transcript unique_Triplet 692209977 692218265 8289 2 0.0241283628905779 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G536400 chr5B_692509601 chr5B 692509601 A A T T 4 missense_variant MODERATE transcript non_Triplet 692509114 692511687 2574 3 0.116550116550117 RFvsST 610661730 713014293 102352564 no 95.0751023322594 TraesCS5B01G536400 chr5B_692509748 chr5B 692509748 C T C T 3 missense_variant MODERATE transcript non_Triplet 692509114 692511687 2574 3 0.116550116550117 RFvsST 610661730 713014293 102352564 no 95.0751023322594 TraesCS5B01G536400 chr5B_692509174 chr5B 692509174 G A G A 3 synonymous_variant LOW transcript non_Triplet 692509114 692511687 2574 3 0.116550116550117 RFvsST 610661730 713014293 102352564 no 95.0751023322594 TraesCS5B01G536500 chr5B_692562706 chr5B 692562706 T C T C 3 synonymous_variant LOW transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536500 chr5B_692564756 chr5B 692564756 G A G A 3 synonymous_variant LOW transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536500 chr5B_692564826 chr5B 692564826 G T G T 3 stop_gained HIGH transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536500 chr5B_692563489 chr5B 692563489 C C G G 4 missense_variant MODERATE transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536500 chr5B_692564892 chr5B 692564892 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536500 chr5B_692563189 chr5B 692563189 G T G T 3 missense_variant MODERATE transcript unique_Triplet 692560858 692564876 4019 6 0.149290868375218 RFvsST 610661730 713014293 102352564 no 39.4270891683127 TraesCS5B01G536600 chr5B_692634742 chr5B 692634742 A G A G 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692633962 chr5B 692633962 G C G C 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634451 chr5B 692634451 T C T C 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692635457 chr5B 692635457 C T C T 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634892 chr5B 692634892 G A G A 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692633946 chr5B 692633946 C T C T 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634229 chr5B 692634229 T C T C 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692635668 chr5B 692635668 T C T C 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692635115 chr5B 692635115 A C A C 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634246 chr5B 692634246 T G T G 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692635475 chr5B 692635475 G A G A 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692636377 chr5B 692636377 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634472 chr5B 692634472 T A T A 3 synonymous_variant LOW transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692636123 chr5B 692636123 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634162 chr5B 692634162 G A G A 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692634401 chr5B 692634401 C T C T 3 missense_variant MODERATE transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536600 chr5B_692636216 chr5B 692636216 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 692629650 692635914 6265 17 0.271348762968875 RFvsST 610661730 713014293 102352564 no 172.499602933021 TraesCS5B01G536800 chr5B_692691910 chr5B 692691910 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 692691202 692691791 590 2 0.338983050847458 RFvsST 610661730 713014293 102352564 no 23.5569076652931 TraesCS5B01G536800 chr5B_692691909 chr5B 692691909 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 692691202 692691791 590 2 0.338983050847458 RFvsST 610661730 713014293 102352564 no 23.5569076652931 TraesCS5B01G540300 chr5B_695657151 chr5B 695657151 C T C T 3 synonymous_variant LOW transcript non_Triplet 695656337 695660951 4615 2 0.0433369447453954 RFvsST 610661730 713014293 102352564 no 195.907432042139 TraesCS5B01G540300 chr5B_695657179 chr5B 695657179 C T C T 3 missense_variant MODERATE transcript non_Triplet 695656337 695660951 4615 2 0.0433369447453954 RFvsST 610661730 713014293 102352564 no 195.907432042139 TraesCS5B01G547000 chr5B_700223782 chr5B 700223782 T T C C 4 synonymous_variant LOW transcript unique_Triplet 700216666 700224998 8333 2 0.0240009600384015 RFvsST 610661730 713014293 102352564 no 23.3605653836045 TraesCS5B01G547000 chr5B_700225004 chr5B 700225004 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 700216666 700224998 8333 2 0.0240009600384015 RFvsST 610661730 713014293 102352564 no 23.3605653836045 TraesCS5B01G547200 chr5B_700233408 chr5B 700233408 G G A A 4 missense_variant MODERATE transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700234687 chr5B 700234687 T T A A 4 synonymous_variant LOW transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700230941 chr5B 700230941 C C G G 4 synonymous_variant LOW transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700234847 chr5B 700234847 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700230852 chr5B 700230852 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700232256 chr5B 700232256 T T C C 4 missense_variant MODERATE transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547200 chr5B_700233488 chr5B 700233488 T T C C 4 synonymous_variant LOW transcript non_Triplet 700230846 700234826 3981 7 0.17583521728209 RFvsST 610661730 713014293 102352564 no 97.0927861871639 TraesCS5B01G547400 chr5B_700330587 chr5B 700330587 G G A A 4 synonymous_variant LOW transcript unique_Triplet 700330578 700335906 5329 3 0.0562957402889848 RFvsST 610661730 713014293 102352564 no 73.7431020618023 TraesCS5B01G547400 chr5B_700332797 chr5B 700332797 G G A A 4 synonymous_variant LOW transcript unique_Triplet 700330578 700335906 5329 3 0.0562957402889848 RFvsST 610661730 713014293 102352564 no 73.7431020618023 TraesCS5B01G547400 chr5B_700330503 chr5B 700330503 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 700330578 700335906 5329 3 0.0562957402889848 RFvsST 610661730 713014293 102352564 no 73.7431020618023 TraesCS5B01G548900 chr5B_701150721 chr5B 701150721 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701150705 chr5B 701150705 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155085 chr5B 701155085 G A G A 3 synonymous_variant LOW transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155164 chr5B 701155164 G T G T 3 missense_variant MODERATE transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155228 chr5B 701155228 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155088 chr5B 701155088 A G A G 3 synonymous_variant LOW transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701152852 chr5B 701152852 A T A T 3 synonymous_variant LOW transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155290 chr5B 701155290 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155205 chr5B 701155205 G A G A 3 synonymous_variant LOW transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701150646 chr5B 701150646 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G548900 chr5B_701155350 chr5B 701155350 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 701149642 701155522 5881 11 0.187043019894576 RFvsST 610661730 713014293 102352564 no 261.705951486769 TraesCS5B01G549100 chr5B_701174382 chr5B 701174382 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 701172729 701173946 1218 2 0.164203612479475 RFvsST 610661730 713014293 102352564 no 12.0296514643005 TraesCS5B01G549100 chr5B_701174270 chr5B 701174270 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 701172729 701173946 1218 2 0.164203612479475 RFvsST 610661730 713014293 102352564 no 12.0296514643005 TraesCS5B01G549200 chr5B_701177216 chr5B 701177216 A C A C 3 synonymous_variant LOW transcript unique_Triplet 701174424 701178063 3640 2 0.0549450549450549 RFvsST 610661730 713014293 102352564 no 14.5578522469409 TraesCS5B01G549200 chr5B_701177177 chr5B 701177177 C T C T 3 synonymous_variant LOW transcript unique_Triplet 701174424 701178063 3640 2 0.0549450549450549 RFvsST 610661730 713014293 102352564 no 14.5578522469409 TraesCS5B01G549300 chr5B_701188372 chr5B 701188372 C G C G 3 missense_variant MODERATE transcript non_Triplet 701188062 701189661 1600 1 0.0625 RFvsST 610661730 713014293 102352564 no 93.4406702858242 TraesCS5B01G549500 chr5B_701275860 chr5B 701275860 A C A C 3 synonymous_variant LOW transcript unique_Triplet 701275398 701278375 2978 2 0.0671591672263264 RFvsST 610661730 713014293 102352564 no 84.7171999604328 TraesCS5B01G549500 chr5B_701275254 chr5B 701275254 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 701275398 701278375 2978 2 0.0671591672263264 RFvsST 610661730 713014293 102352564 no 84.7171999604328 TraesCS5B01G557500 chr5B_705281937 chr5B 705281937 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 705276928 705279657 2730 1 0.0366300366300366 RFvsST 610661730 713014293 102352564 no 329.909155703335 TraesCS5B01G559000 chr5B_706155299 chr5B 706155299 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 706155422 706156857 1436 1 0.0696378830083565 RFvsST 610661730 713014293 102352564 no 1566.23219887257 TraesCS5B01G559100 chr5B_706171455 chr5B 706171455 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 706165055 706171512 6458 4 0.061938680706101 RFvsST 610661730 713014293 102352564 no 87.7449222171382 TraesCS5B01G559100 chr5B_706165385 chr5B 706165385 A A G G 4 synonymous_variant LOW transcript unique_Triplet 706165055 706171512 6458 4 0.061938680706101 RFvsST 610661730 713014293 102352564 no 87.7449222171382 TraesCS5B01G559100 chr5B_706164956 chr5B 706164956 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 706165055 706171512 6458 4 0.061938680706101 RFvsST 610661730 713014293 102352564 no 87.7449222171382 TraesCS5B01G559100 chr5B_706170079 chr5B 706170079 A A G G 4 synonymous_variant LOW transcript unique_Triplet 706165055 706171512 6458 4 0.061938680706101 RFvsST 610661730 713014293 102352564 no 87.7449222171382 TraesCS5B01G559300 chr5B_706305499 chr5B 706305499 C C T T 4 synonymous_variant LOW transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706306425 chr5B 706306425 G G A A 4 missense_variant MODERATE transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706305629 chr5B 706305629 C C T T 4 synonymous_variant LOW transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706306396 chr5B 706306396 C C T T 4 missense_variant MODERATE transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706306123 chr5B 706306123 C C T T 4 synonymous_variant LOW transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706307367 chr5B 706307367 G G A A 4 synonymous_variant LOW transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559300 chr5B_706309144 chr5B 706309144 A A G G 4 synonymous_variant LOW transcript unique_Triplet 706305460 706311144 5685 7 0.123131046613896 RFvsST 610661730 713014293 102352564 no 82.1417352850307 TraesCS5B01G559600 chr5B_706353951 chr5B 706353951 G G A A 4 missense_variant MODERATE transcript unique_Triplet 706353905 706356043 2139 2 0.0935016362786349 RFvsST 610661730 713014293 102352564 no 109.912339327912 TraesCS5B01G559600 chr5B_706355919 chr5B 706355919 A A G G 4 missense_variant MODERATE transcript unique_Triplet 706353905 706356043 2139 2 0.0935016362786349 RFvsST 610661730 713014293 102352564 no 109.912339327912 TraesCS5B01G560200 chr5B_706713698 chr5B 706713698 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 706710272 706713670 3399 1 0.0294204177699323 RFvsST 610661730 713014293 102352564 no 191.086367436473 TraesCS5B01G560400 chr5B_707134581 chr5B 707134581 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 707132241 707134451 2211 2 0.0904568068747173 RFvsST 610661730 713014293 102352564 no 4855.2939633783 TraesCS5B01G560400 chr5B_707131652 chr5B 707131652 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 707132241 707134451 2211 2 0.0904568068747173 RFvsST 610661730 713014293 102352564 no 4855.2939633783 TraesCS5B01G560800 chr5B_707394922 chr5B 707394922 C C G G 4 missense_variant MODERATE transcript non_Triplet 707394769 707395170 402 5 1.24378109452736 RFvsST 610661730 713014293 102352564 no 140.048907144229 TraesCS5B01G560800 chr5B_707394850 chr5B 707394850 C C G G 4 synonymous_variant LOW transcript non_Triplet 707394769 707395170 402 5 1.24378109452736 RFvsST 610661730 713014293 102352564 no 140.048907144229 TraesCS5B01G560800 chr5B_707394698 chr5B 707394698 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 707394769 707395170 402 5 1.24378109452736 RFvsST 610661730 713014293 102352564 no 140.048907144229 TraesCS5B01G560800 chr5B_707395123 chr5B 707395123 A A C C 4 synonymous_variant LOW transcript non_Triplet 707394769 707395170 402 5 1.24378109452736 RFvsST 610661730 713014293 102352564 no 140.048907144229 TraesCS5B01G560800 chr5B_707394720 chr5B 707394720 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 707394769 707395170 402 5 1.24378109452736 RFvsST 610661730 713014293 102352564 no 140.048907144229 TraesCS5B01G560900 chr5B_707408829 chr5B 707408829 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 707407921 707410854 2934 3 0.102249488752556 RFvsST 610661730 713014293 102352564 no 65.5056943713108 TraesCS5B01G560900 chr5B_707409322 chr5B 707409322 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 707407921 707410854 2934 3 0.102249488752556 RFvsST 610661730 713014293 102352564 no 65.5056943713108 TraesCS5B01G560900 chr5B_707408853 chr5B 707408853 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 707407921 707410854 2934 3 0.102249488752556 RFvsST 610661730 713014293 102352564 no 65.5056943713108 TraesCS5B01G561000 chr5B_707416510 chr5B 707416510 G G T T 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415829 chr5B 707415829 T T C C 4 synonymous_variant LOW transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707416349 chr5B 707416349 G G A A 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414317 chr5B 707414317 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707416436 chr5B 707416436 T T A A 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414692 chr5B 707414692 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414282 chr5B 707414282 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707416433 chr5B 707416433 T T G G 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414744 chr5B 707414744 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415844 chr5B 707415844 T T A A 4 synonymous_variant LOW transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415745 chr5B 707415745 A A G G 4 synonymous_variant LOW transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414571 chr5B 707414571 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415717 chr5B 707415717 G G A A 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707417194 chr5B 707417194 G G A A 4 synonymous_variant LOW transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414905 chr5B 707414905 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415007 chr5B 707415007 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707417168 chr5B 707417168 A A G G 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414957 chr5B 707414957 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415038 chr5B 707415038 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414843 chr5B 707414843 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707416537 chr5B 707416537 G G C C 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414698 chr5B 707414698 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707417018 chr5B 707417018 T T A A 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707415832 chr5B 707415832 C C T T 4 synonymous_variant LOW transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707416990 chr5B 707416990 C C A A 4 missense_variant MODERATE transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561000 chr5B_707414771 chr5B 707414771 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707415536 707417206 1671 26 1.55595451825254 RFvsST 610661730 713014293 102352564 no 423.137201265019 TraesCS5B01G561100 chr5B_707417210 chr5B 707417210 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 707420190 707422514 2325 2 0.0860215053763441 RFvsST 610661730 713014293 102352564 no 11.4591665702641 TraesCS5B01G561100 chr5B_707417267 chr5B 707417267 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 707420190 707422514 2325 2 0.0860215053763441 RFvsST 610661730 713014293 102352564 no 11.4591665702641 TraesCS5B01G561200 chr5B_707432746 chr5B 707432746 C C T T 4 missense_variant MODERATE transcript unique_Triplet 707432420 707432767 348 1 0.28735632183908 RFvsST 610661730 713014293 102352564 no 34.4829458613801 TraesCS5B01G561300 chr5B_707440910 chr5B 707440910 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 707439980 707440732 753 1 0.132802124833997 RFvsST 610661730 713014293 102352564 no 724.853617177921 TraesCS5B01G561400 chr5B_707476382 chr5B 707476382 G G A A 4 synonymous_variant LOW transcript unique_Triplet 707475966 707476841 876 1 0.114155251141553 RFvsST 610661730 713014293 102352564 no 37.5826960274088 TraesCS5B01G561500 chr5B_707703396 chr5B 707703396 C C G G 4 missense_variant MODERATE transcript unique_Triplet 707699209 707708911 9703 2 0.0206121817994435 RFvsST 610661730 713014293 102352564 no 40.7275448789313 TraesCS5B01G561500 chr5B_707700382 chr5B 707700382 G G A A 4 synonymous_variant LOW transcript unique_Triplet 707699209 707708911 9703 2 0.0206121817994435 RFvsST 610661730 713014293 102352564 no 40.7275448789313 TraesCS5B01G561600 chr5B_707875628 chr5B 707875628 G G C C 4 missense_variant MODERATE transcript unique_Triplet 707875354 707875794 441 3 0.680272108843537 RFvsST 610661730 713014293 102352564 no 24.6462064816977 TraesCS5B01G561600 chr5B_707875413 chr5B 707875413 A A G G 4 missense_variant MODERATE transcript unique_Triplet 707875354 707875794 441 3 0.680272108843537 RFvsST 610661730 713014293 102352564 no 24.6462064816977 TraesCS5B01G561600 chr5B_707875629 chr5B 707875629 C C G G 4 missense_variant MODERATE transcript unique_Triplet 707875354 707875794 441 3 0.680272108843537 RFvsST 610661730 713014293 102352564 no 24.6462064816977 TraesCS5B01G562100 chr5B_708222235 chr5B 708222235 T T G G 4 missense_variant MODERATE transcript unique_Triplet 708218104 708223136 5033 1 0.0198688654877806 RFvsST 610661730 713014293 102352564 no 153.109280371758 TraesCS5B01G565100 chr5B_710233982 chr5B 710233982 A A G G 4 missense_variant MODERATE transcript non_Triplet 710226104 710234082 7979 1 0.0125328988595062 RFvsST 610661730 713014293 102352564 no 50.5114754432542 TraesCS5B01G569800 chr5B_711933536 chr5B 711933536 C C G G 4 missense_variant MODERATE transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711934055 chr5B 711934055 T T G G 4 synonymous_variant LOW transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711935618 chr5B 711935618 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711933782 chr5B 711933782 T T C C 4 synonymous_variant LOW transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711934244 chr5B 711934244 T T C C 4 synonymous_variant LOW transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711933554 chr5B 711933554 G G A A 4 synonymous_variant LOW transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711933772 chr5B 711933772 C C T T 4 missense_variant MODERATE transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711932988 chr5B 711932988 C C T T 4 missense_variant MODERATE transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569800 chr5B_711933393 chr5B 711933393 G G T T 4 missense_variant MODERATE transcript non_Triplet 711930402 711934355 3954 9 0.227617602427921 RFvsST 610661730 713014293 102352564 no 1314.89393106892 TraesCS5B01G569900 chr5B_711935945 chr5B 711935945 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 711940814 711944675 3862 5 0.129466597617815 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G569900 chr5B_711937131 chr5B 711937131 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 711940814 711944675 3862 5 0.129466597617815 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G569900 chr5B_711937101 chr5B 711937101 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 711940814 711944675 3862 5 0.129466597617815 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G569900 chr5B_711935943 chr5B 711935943 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 711940814 711944675 3862 5 0.129466597617815 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G569900 chr5B_711935893 chr5B 711935893 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 711940814 711944675 3862 5 0.129466597617815 RFvsST 610661730 713014293 102352564 no No_match TraesCS5B01G571100 chr5B_712478078 chr5B 712478078 A A C C 4 synonymous_variant LOW transcript non_Triplet 712474815 712478314 3500 5 0.142857142857143 RFvsST 610661730 713014293 102352564 no 39.0976794465375 TraesCS5B01G571100 chr5B_712478079 chr5B 712478079 G G A A 4 missense_variant MODERATE transcript non_Triplet 712474815 712478314 3500 5 0.142857142857143 RFvsST 610661730 713014293 102352564 no 39.0976794465375 TraesCS5B01G571100 chr5B_712477386 chr5B 712477386 C C T T 4 synonymous_variant LOW transcript non_Triplet 712474815 712478314 3500 5 0.142857142857143 RFvsST 610661730 713014293 102352564 no 39.0976794465375 TraesCS5B01G571100 chr5B_712477362 chr5B 712477362 G G C C 4 synonymous_variant LOW transcript non_Triplet 712474815 712478314 3500 5 0.142857142857143 RFvsST 610661730 713014293 102352564 no 39.0976794465375 TraesCS5B01G571100 chr5B_712477353 chr5B 712477353 C C G G 4 synonymous_variant LOW transcript non_Triplet 712474815 712478314 3500 5 0.142857142857143 RFvsST 610661730 713014293 102352564 no 39.0976794465375 TraesCS5B01G571200 chr5B_712600052 chr5B 712600052 C C A A 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571200 chr5B_712599173 chr5B 712599173 G G A A 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571200 chr5B_712599428 chr5B 712599428 G G A A 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571200 chr5B_712600555 chr5B 712600555 A A C C 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571200 chr5B_712601112 chr5B 712601112 A A G G 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571200 chr5B_712600972 chr5B 712600972 G G A A 4 missense_variant MODERATE transcript non_Triplet 712596658 712601724 5067 6 0.118413262285376 RFvsST 610661730 713014293 102352564 no 192.161951918562 TraesCS5B01G571300 chr5B_712700161 chr5B 712700161 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712696494 chr5B 712696494 T T C C 4 missense_variant MODERATE transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712696286 chr5B 712696286 C C T T 4 synonymous_variant LOW transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712697171 chr5B 712697171 C C T T 4 synonymous_variant LOW transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712700584 chr5B 712700584 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712696011 chr5B 712696011 T T G G 4 synonymous_variant LOW transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571300 chr5B_712700357 chr5B 712700357 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 712695931 712697384 1454 7 0.481430536451169 RFvsST 610661730 713014293 102352564 no 88.55895578433 TraesCS5B01G571400 chr5B_712703756 chr5B 712703756 G G C C 4 missense_variant MODERATE transcript non_Triplet 712700773 712704982 4210 4 0.0950118764845606 RFvsST 610661730 713014293 102352564 no 287.407191881082 TraesCS5B01G571400 chr5B_712704282 chr5B 712704282 C C T T 4 synonymous_variant LOW transcript non_Triplet 712700773 712704982 4210 4 0.0950118764845606 RFvsST 610661730 713014293 102352564 no 287.407191881082 TraesCS5B01G571400 chr5B_712704285 chr5B 712704285 C C G G 4 synonymous_variant LOW transcript non_Triplet 712700773 712704982 4210 4 0.0950118764845606 RFvsST 610661730 713014293 102352564 no 287.407191881082 TraesCS5B01G571400 chr5B_712703722 chr5B 712703722 G G A A 4 missense_variant MODERATE transcript non_Triplet 712700773 712704982 4210 4 0.0950118764845606 RFvsST 610661730 713014293 102352564 no 287.407191881082 TraesCS5B01G571500 chr5B_712850813 chr5B 712850813 T T C C 4 synonymous_variant LOW transcript non_Triplet 712849697 712851708 2012 5 0.248508946322068 RFvsST 610661730 713014293 102352564 no 104.101929702015 TraesCS5B01G571500 chr5B_712850551 chr5B 712850551 G G A A 4 missense_variant MODERATE transcript non_Triplet 712849697 712851708 2012 5 0.248508946322068 RFvsST 610661730 713014293 102352564 no 104.101929702015 TraesCS5B01G571500 chr5B_712851435 chr5B 712851435 C C G G 4 synonymous_variant LOW transcript non_Triplet 712849697 712851708 2012 5 0.248508946322068 RFvsST 610661730 713014293 102352564 no 104.101929702015 TraesCS5B01G571500 chr5B_712850222 chr5B 712850222 C C T T 4 missense_variant MODERATE transcript non_Triplet 712849697 712851708 2012 5 0.248508946322068 RFvsST 610661730 713014293 102352564 no 104.101929702015 TraesCS5B01G571500 chr5B_712851567 chr5B 712851567 G G A A 4 synonymous_variant LOW transcript non_Triplet 712849697 712851708 2012 5 0.248508946322068 RFvsST 610661730 713014293 102352564 no 104.101929702015 TraesCS5B01G572300 chr5B_712901366 chr5B 712901366 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 712901376 712905885 4510 3 0.0665188470066519 RFvsST 610661730 713014293 102352564 no 1945.41220869014 TraesCS5B01G572300 chr5B_712901407 chr5B 712901407 T T C C 4 missense_variant MODERATE transcript non_Triplet 712901376 712905885 4510 3 0.0665188470066519 RFvsST 610661730 713014293 102352564 no 1945.41220869014 TraesCS5B01G572300 chr5B_712906689 chr5B 712906689 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 712901376 712905885 4510 3 0.0665188470066519 RFvsST 610661730 713014293 102352564 no 1945.41220869014 TraesCS5B01G572400 chr5B_712911329 chr5B 712911329 G G T T 4 synonymous_variant LOW transcript non_Triplet 712906764 712911412 4649 2 0.0430200043020004 RFvsST 610661730 713014293 102352564 no 570.333427151084 TraesCS5B01G572400 chr5B_712906823 chr5B 712906823 C C G G 4 missense_variant MODERATE transcript non_Triplet 712906764 712911412 4649 2 0.0430200043020004 RFvsST 610661730 713014293 102352564 no 570.333427151084 TraesCS5D01G001200 chr5D_1614602 chr5D 1614602 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 1609795 1614301 4507 1 0.0221877080097626 RFvsST 93819 63105874 63012056 no 1740.98300713953 TraesCS5D01G005300 chr5D_4042785 chr5D 4042785 C C T T 4 intron_variant MODIFIER transcript non_Triplet 4040337 4054864 14528 1 0.00688325991189427 RFvsST 93819 63105874 63012056 no 1953.75282084212 TraesCS5D01G011800 chr5D_6376776 chr5D 6376776 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 6377964 6391459 13496 1 0.00740960284528749 RFvsST 93819 63105874 63012056 no No_match TraesCS5D01G012500 chr5D_6821932 chr5D 6821932 T T C C 4 synonymous_variant LOW transcript non_Triplet 6820882 6823785 2904 1 0.034435261707989 RFvsST 93819 63105874 63012056 no 405.336500115501 TraesCS5D01G022300 chr5D_15062333 chr5D 15062333 C C G G 4 missense_variant MODERATE transcript non_Triplet 15061834 15063502 1669 2 0.11983223487118 RFvsST 93819 63105874 63012056 no 646.229709819007 TraesCS5D01G022300 chr5D_15061564 chr5D 15061564 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 15061834 15063502 1669 2 0.11983223487118 RFvsST 93819 63105874 63012056 no 646.229709819007 TraesCS5D01G025000 chr5D_22376276 chr5D 22376276 T C T C 3 missense_variant MODERATE transcript unique_Triplet 22374601 22380888 6288 2 0.0318066157760814 RFvsST 93819 63105874 63012056 no 69.4017250370232 TraesCS5D01G025000 chr5D_22378179 chr5D 22378179 G A G A 3 missense_variant MODERATE transcript unique_Triplet 22374601 22380888 6288 2 0.0318066157760814 RFvsST 93819 63105874 63012056 no 69.4017250370232 TraesCS5D01G070900 chr5D_68905122 chr5D 68905122 C C T T 4 synonymous_variant LOW transcript unique_Triplet 68901808 68905217 3410 1 0.0293255131964809 RFvsST 28445561 193614070 165168510 no 159.134957628268 TraesCS5D01G076400 chr5D_75920120 chr5D 75920120 G A G A 3 missense_variant MODERATE transcript unique_Triplet 75918991 75920622 1632 1 0.0612745098039216 RFvsST 28445561 193614070 165168510 no 268.609755757214 TraesCS5D01G087700 chr5D_93066885 chr5D 93066885 G G A A 4 missense_variant MODERATE transcript unique_Triplet 93066177 93069510 3334 1 0.02999400119976 RFvsST 28445561 193614070 165168510 no 889.893453577378 TraesCS5D01G089400 chr5D_96250400 chr5D 96250400 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 96248617 96249520 904 1 0.110619469026549 RFvsST 28445561 193614070 165168510 no 21.6599756986503 TraesCS5D01G095500 chr5D_105063632 chr5D 105063632 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 105058640 105058909 270 2 0.740740740740741 RFvsST 28445561 193614070 165168510 no No_match TraesCS5D01G095500 chr5D_105062932 chr5D 105062932 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 105058640 105058909 270 2 0.740740740740741 RFvsST 28445561 193614070 165168510 no No_match TraesCS5D01G097800 chr5D_108517000 chr5D 108517000 C T C T 3 missense_variant MODERATE transcript unique_Triplet 108515892 108520024 4133 1 0.0241954996370675 RFvsST 28445561 193614070 165168510 no 794.755103619856 TraesCS5D01G098900 chr5D_110378966 chr5D 110378966 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 110371124 110378418 7295 1 0.0137080191912269 RFvsST 28445561 193614070 165168510 no 185.889493598788 TraesCS5D01G151400 chr5D_240516751 chr5D 240516751 T T C C 4 start_lost HIGH transcript nonUnique_Triplet 240511986 240516751 4766 1 0.0209819555182543 RFvsST 175775832 329610428 153834597 no 24.3278732740511 TraesCS5D01G152700 chr5D_241666625 chr5D 241666625 G G A A 4 missense_variant MODERATE transcript unique_Triplet 241665134 241667659 2526 1 0.0395882818685669 RFvsST 175775832 329610428 153834597 no 111.97908505324 TraesCS5D01G161400 chr5D_251953300 chr5D 251953300 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 251954810 251956320 1511 1 0.0661813368630046 RFvsST 175775832 329610428 153834597 no 58.5824888221711 TraesCS5D01G162000 chr5D_253183115 chr5D 253183115 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 253177937 253178716 780 1 0.128205128205128 RFvsST 175775832 329610428 153834597 no 22.1209782986075 TraesCS5D01G173800 chr5D_272140232 chr5D 272140232 T C T C 3 synonymous_variant LOW transcript unique_Triplet 272135557 272141255 5699 1 0.0175469380593087 RFvsST 175775832 329610428 153834597 no No_match TraesCS5D01G179000 chr5D_278279845 chr5D 278279845 T T C C 4 synonymous_variant LOW transcript unique_Triplet 278279465 278282717 3253 1 0.0307408545957578 RFvsST 175775832 329610428 153834597 no 210.649514450431 TraesCS5D01G179100 chr5D_278311924 chr5D 278311924 C C T T 4 missense_variant MODERATE transcript unique_Triplet 278310561 278312301 1741 1 0.0574382538770821 RFvsST 175775832 329610428 153834597 no 109.881781089842 TraesCS5D01G179600 chr5D_278625735 chr5D 278625735 G A G A 3 missense_variant MODERATE transcript unique_Triplet 278623801 278638387 14587 1 0.00685541920888462 RFvsST 175775832 329610428 153834597 no 398.468002891615 TraesCS5D01G183300 chr5D_285029771 chr5D 285029771 G A G A 3 missense_variant MODERATE transcript unique_Triplet 285025713 285029796 4084 1 0.0244857982370225 RFvsST 175775832 329610428 153834597 no 80.8150317965482 TraesCS5D01G187100 chr5D_289073485 chr5D 289073485 C T C T 3 synonymous_variant LOW transcript unique_Triplet 289072248 289074607 2360 1 0.0423728813559322 RFvsST 175775832 329610428 153834597 no 546.843420623614 TraesCS5D01G272800 chr5D_375677646 chr5D 375677646 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 375677282 375679383 2102 1 0.0475737392959087 RFvsST 341029952 423833725 82803774 no 121.556533673807 TraesCS5D01G287700 chr5D_387251873 chr5D 387251873 T C T C 3 synonymous_variant LOW transcript unique_Triplet 387250257 387251909 1653 1 0.0604960677555959 RFvsST 341029952 423833725 82803774 no 150.319049434013 TraesCS5D01G292200 chr5D_389597595 chr5D 389597595 C C T T 4 synonymous_variant LOW transcript unique_Triplet 389595852 389598251 2400 1 0.0416666666666667 RFvsST 341029952 423833725 82803774 no 283.208185723463 TraesCS5D01G374000 chr5D_447237791 chr5D 447237791 G G A A 4 missense_variant MODERATE transcript unique_Triplet 447236594 447239469 2876 1 0.0347705146036161 RFvsST 416206515 565975092 149768578 no 133.54676237204 TraesCS5D01G374100 chr5D_447243084 chr5D 447243084 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 447239799 447241562 1764 1 0.0566893424036281 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G380200 chr5D_450689585 chr5D 450689585 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 450686195 450688369 2175 1 0.0459770114942529 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G384000 chr5D_453807686 chr5D 453807686 C C A A 4 synonymous_variant LOW transcript unique_Triplet 453804048 453811386 7339 1 0.0136258345823682 RFvsST 416206515 565975092 149768578 no 150.556267527267 TraesCS5D01G390400 chr5D_458925138 chr5D 458925138 G G A A 4 synonymous_variant LOW transcript unique_Triplet 458916836 458925406 8571 1 0.0116672500291681 RFvsST 416206515 565975092 149768578 no 61.8967288290856 TraesCS5D01G399200 chr5D_465006175 chr5D 465006175 G A G A 3 synonymous_variant LOW transcript unique_Triplet 464999205 465009352 10148 2 0.0197083169097359 RFvsST 416206515 565975092 149768578 no 11.4037118891202 TraesCS5D01G399200 chr5D_465006164 chr5D 465006164 C T C T 3 synonymous_variant LOW transcript unique_Triplet 464999205 465009352 10148 2 0.0197083169097359 RFvsST 416206515 565975092 149768578 no 11.4037118891202 TraesCS5D01G406000 chr5D_471048048 chr5D 471048048 C T C T 3 synonymous_variant LOW transcript unique_Triplet 471044336 471048465 4130 1 0.0242130750605327 RFvsST 416206515 565975092 149768578 no 337.27522489925 TraesCS5D01G411100 chr5D_474216941 chr5D 474216941 A A C C 4 missense_variant MODERATE transcript non_Triplet 474213232 474218627 5396 1 0.0185322461082283 RFvsST 416206515 565975092 149768578 no 7.36559052317246 TraesCS5D01G411300 chr5D_474717731 chr5D 474717731 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 474717117 474719011 1895 1 0.0527704485488127 RFvsST 416206515 565975092 149768578 no 81.1811737463438 TraesCS5D01G414700 chr5D_477031653 chr5D 477031653 G G A A 4 stop_gained HIGH transcript unique_Triplet 477029452 477031722 2271 1 0.0440334654337296 RFvsST 416206515 565975092 149768578 no 149.1461666568 TraesCS5D01G414900 chr5D_477315004 chr5D 477315004 C C T T 4 missense_variant MODERATE transcript unique_Triplet 477312571 477315200 2630 1 0.0380228136882129 RFvsST 416206515 565975092 149768578 no 372.140441554707 TraesCS5D01G416900 chr5D_479126199 chr5D 479126199 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 479125702 479127018 1317 1 0.0759301442672741 RFvsST 416206515 565975092 149768578 no 215.352703462095 TraesCS5D01G418200 chr5D_480184657 chr5D 480184657 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 480182880 480192513 9634 1 0.0103799045048786 RFvsST 416206515 565975092 149768578 no 313.504988464257 TraesCS5D01G418800 chr5D_480366349 chr5D 480366349 C C T T 4 missense_variant MODERATE transcript unique_Triplet 480364294 480366425 2132 1 0.0469043151969981 RFvsST 416206515 565975092 149768578 no 5.79588023079658 TraesCS5D01G419200 chr5D_480462978 chr5D 480462978 G A G A 3 stop_gained HIGH transcript unique_Triplet 480462421 480465878 3458 1 0.0289184499710815 RFvsST 416206515 565975092 149768578 no 824.922862146736 TraesCS5D01G430600 chr5D_487889064 chr5D 487889064 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 487883927 487889276 5350 1 0.0186915887850467 RFvsST 416206515 565975092 149768578 no 136.127516853926 TraesCS5D01G433400 chr5D_489189208 chr5D 489189208 G A G A 3 synonymous_variant LOW transcript unique_Triplet 489188483 489189301 819 1 0.122100122100122 RFvsST 416206515 565975092 149768578 no 124.581890558015 TraesCS5D01G433900 chr5D_489742566 chr5D 489742566 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 489743782 489746846 3065 1 0.032626427406199 RFvsST 416206515 565975092 149768578 no 121.750616273273 TraesCS5D01G435700 chr5D_490516503 chr5D 490516503 A A G G 4 missense_variant MODERATE transcript non_Triplet 490511957 490519420 7464 1 0.0133976420150054 RFvsST 416206515 565975092 149768578 no 648.268000804336 TraesCS5D01G436900 chr5D_490998434 chr5D 490998434 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 490998309 491002703 4395 1 0.0227531285551763 RFvsST 416206515 565975092 149768578 no 123.543714912075 TraesCS5D01G446400 chr5D_496846454 chr5D 496846454 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 496846494 496847836 1343 1 0.0744601638123604 RFvsST 416206515 565975092 149768578 no 404.969036148605 TraesCS5D01G452500 chr5D_500440830 chr5D 500440830 A A G G 4 missense_variant MODERATE transcript unique_Triplet 500440685 500449088 8404 2 0.0237981913374584 RFvsST 416206515 565975092 149768578 no 152.45339358205 TraesCS5D01G452500 chr5D_500441822 chr5D 500441822 C C G G 4 synonymous_variant LOW transcript unique_Triplet 500440685 500449088 8404 2 0.0237981913374584 RFvsST 416206515 565975092 149768578 no 152.45339358205 TraesCS5D01G454100 chr5D_501206829 chr5D 501206829 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 501199606 501206731 7126 1 0.0140331181588549 RFvsST 416206515 565975092 149768578 no 84.0287939611575 TraesCS5D01G454300 chr5D_501346547 chr5D 501346547 G G A A 4 missense_variant MODERATE transcript unique_Triplet 501339462 501346811 7350 2 0.0272108843537415 RFvsST 416206515 565975092 149768578 no 216.176043570651 TraesCS5D01G454300 chr5D_501346165 chr5D 501346165 C C T T 4 synonymous_variant LOW transcript unique_Triplet 501339462 501346811 7350 2 0.0272108843537415 RFvsST 416206515 565975092 149768578 no 216.176043570651 TraesCS5D01G454700 chr5D_501710164 chr5D 501710164 T T C C 4 missense_variant MODERATE transcript unique_Triplet 501707257 501710912 3656 3 0.0820568927789934 RFvsST 416206515 565975092 149768578 no 170.949591230876 TraesCS5D01G454700 chr5D_501709914 chr5D 501709914 G G T T 4 missense_variant MODERATE transcript unique_Triplet 501707257 501710912 3656 3 0.0820568927789934 RFvsST 416206515 565975092 149768578 no 170.949591230876 TraesCS5D01G454700 chr5D_501710424 chr5D 501710424 G G A A 4 missense_variant MODERATE transcript unique_Triplet 501707257 501710912 3656 3 0.0820568927789934 RFvsST 416206515 565975092 149768578 no 170.949591230876 TraesCS5D01G454800 chr5D_501774479 chr5D 501774479 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501772729 501774471 1743 2 0.114744693057946 RFvsST 416206515 565975092 149768578 no 95.9444857123881 TraesCS5D01G454800 chr5D_501772593 chr5D 501772593 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501772729 501774471 1743 2 0.114744693057946 RFvsST 416206515 565975092 149768578 no 95.9444857123881 TraesCS5D01G455000 chr5D_502018419 chr5D 502018419 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 502018340 502027075 8736 3 0.0343406593406593 RFvsST 416206515 565975092 149768578 no 309.692077656107 TraesCS5D01G455000 chr5D_502026512 chr5D 502026512 G G A A 4 synonymous_variant LOW transcript unique_Triplet 502018340 502027075 8736 3 0.0343406593406593 RFvsST 416206515 565975092 149768578 no 309.692077656107 TraesCS5D01G455000 chr5D_502026595 chr5D 502026595 C C A A 4 missense_variant MODERATE transcript unique_Triplet 502018340 502027075 8736 3 0.0343406593406593 RFvsST 416206515 565975092 149768578 no 309.692077656107 TraesCS5D01G455700 chr5D_502874393 chr5D 502874393 G G A A 4 synonymous_variant LOW transcript unique_Triplet 502874075 502874866 792 3 0.378787878787879 RFvsST 416206515 565975092 149768578 no 43.694520007756 TraesCS5D01G455700 chr5D_502874410 chr5D 502874410 C C T T 4 missense_variant MODERATE transcript unique_Triplet 502874075 502874866 792 3 0.378787878787879 RFvsST 416206515 565975092 149768578 no 43.694520007756 TraesCS5D01G455700 chr5D_502874138 chr5D 502874138 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 502874075 502874866 792 3 0.378787878787879 RFvsST 416206515 565975092 149768578 no 43.694520007756 TraesCS5D01G455800 chr5D_502876869 chr5D 502876869 T T G G 4 missense_variant MODERATE transcript unique_Triplet 502876372 502883304 6933 1 0.0144237703735757 RFvsST 416206515 565975092 149768578 no 82.3779833658137 TraesCS5D01G455900 chr5D_503048908 chr5D 503048908 G G A A 4 missense_variant MODERATE transcript unique_Triplet 503048515 503050047 1533 4 0.260926288323549 RFvsST 416206515 565975092 149768578 no 286.014003377088 TraesCS5D01G455900 chr5D_503049879 chr5D 503049879 A A G G 4 synonymous_variant LOW transcript unique_Triplet 503048515 503050047 1533 4 0.260926288323549 RFvsST 416206515 565975092 149768578 no 286.014003377088 TraesCS5D01G455900 chr5D_503049915 chr5D 503049915 C C T T 4 synonymous_variant LOW transcript unique_Triplet 503048515 503050047 1533 4 0.260926288323549 RFvsST 416206515 565975092 149768578 no 286.014003377088 TraesCS5D01G455900 chr5D_503049543 chr5D 503049543 T T C C 4 synonymous_variant LOW transcript unique_Triplet 503048515 503050047 1533 4 0.260926288323549 RFvsST 416206515 565975092 149768578 no 286.014003377088 TraesCS5D01G456000 chr5D_503085267 chr5D 503085267 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503084174 chr5D 503084174 C C A A 4 missense_variant MODERATE transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503079718 chr5D 503079718 T T G G 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503078126 chr5D 503078126 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503085172 chr5D 503085172 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503079331 chr5D 503079331 A A G G 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503080093 chr5D 503080093 G G C C 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503079583 chr5D 503079583 G G A A 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503080210 chr5D 503080210 C C G G 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503078171 chr5D 503078171 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503079202 chr5D 503079202 C C G G 4 synonymous_variant LOW transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G456000 chr5D_503078129 chr5D 503078129 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 503078335 503085131 6797 12 0.176548477269384 RFvsST 416206515 565975092 149768578 no 662.068937592105 TraesCS5D01G459500 chr5D_503432010 chr5D 503432010 A A G G 4 missense_variant MODERATE transcript non_Triplet 503431440 503433554 2115 1 0.0472813238770686 RFvsST 416206515 565975092 149768578 no 253.759536403593 TraesCS5D01G459700 chr5D_503503163 chr5D 503503163 T T A A 4 synonymous_variant LOW transcript non_Triplet 503502546 503504567 2022 3 0.148367952522255 RFvsST 416206515 565975092 149768578 no 107.335698744845 TraesCS5D01G459700 chr5D_503501642 chr5D 503501642 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 503502546 503504567 2022 3 0.148367952522255 RFvsST 416206515 565975092 149768578 no 107.335698744845 TraesCS5D01G459700 chr5D_503501666 chr5D 503501666 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 503502546 503504567 2022 3 0.148367952522255 RFvsST 416206515 565975092 149768578 no 107.335698744845 TraesCS5D01G459800 chr5D_503663819 chr5D 503663819 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 503663901 503667241 3341 5 0.149655791679138 RFvsST 416206515 565975092 149768578 no 11.5871599080943 TraesCS5D01G459800 chr5D_503663889 chr5D 503663889 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 503663901 503667241 3341 5 0.149655791679138 RFvsST 416206515 565975092 149768578 no 11.5871599080943 TraesCS5D01G459800 chr5D_503664033 chr5D 503664033 A A G G 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 503663901 503667241 3341 5 0.149655791679138 RFvsST 416206515 565975092 149768578 no 11.5871599080943 TraesCS5D01G459800 chr5D_503669750 chr5D 503669750 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 503663901 503667241 3341 5 0.149655791679138 RFvsST 416206515 565975092 149768578 no 11.5871599080943 TraesCS5D01G459800 chr5D_503669724 chr5D 503669724 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 503663901 503667241 3341 5 0.149655791679138 RFvsST 416206515 565975092 149768578 no 11.5871599080943 TraesCS5D01G462300 chr5D_506074768 chr5D 506074768 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506075599 chr5D 506075599 A A G G 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506075264 chr5D 506075264 G G A A 4 missense_variant MODERATE transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506075695 chr5D 506075695 C C A A 4 missense_variant MODERATE transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506085087 chr5D 506085087 G G A A 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506081655 chr5D 506081655 A A G G 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506075029 chr5D 506075029 A A G G 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506084234 chr5D 506084234 G G A A 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G462300 chr5D_506075314 chr5D 506075314 T T C C 4 synonymous_variant LOW transcript non_Triplet 506074777 506091688 16912 9 0.0532166508987701 RFvsST 416206515 565975092 149768578 no 477.201899977556 TraesCS5D01G463900 chr5D_507431173 chr5D 507431173 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 507426224 507431301 5078 2 0.0393855848759354 RFvsST 416206515 565975092 149768578 no 666.39223024067 TraesCS5D01G463900 chr5D_507431172 chr5D 507431172 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 507426224 507431301 5078 2 0.0393855848759354 RFvsST 416206515 565975092 149768578 no 666.39223024067 TraesCS5D01G464200 chr5D_507567105 chr5D 507567105 T T C C 4 missense_variant MODERATE transcript unique_Triplet 507561303 507568188 6886 1 0.0145222189950624 RFvsST 416206515 565975092 149768578 no 27.3444737529215 TraesCS5D01G480400 chr5D_517975889 chr5D 517975889 T T G G 4 missense_variant MODERATE transcript non_Triplet 517974850 517976208 1359 1 0.0735835172921266 RFvsST 416206515 565975092 149768578 no 82.1451339718649 TraesCS5D01G481200 chr5D_519278657 chr5D 519278657 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 519277124 519278578 1455 1 0.0687285223367698 RFvsST 416206515 565975092 149768578 no 690.869486437343 TraesCS5D01G496800 chr5D_527186920 chr5D 527186920 C C T T 4 synonymous_variant LOW transcript unique_Triplet 527180971 527200021 19051 1 0.00524906829037846 RFvsST 416206515 565975092 149768578 no 173.519192824667 TraesCS5D01G503800 chr5D_530428738 chr5D 530428738 G G A A 4 synonymous_variant LOW transcript non_Triplet 530428630 530432392 3763 1 0.0265745415891576 RFvsST 416206515 565975092 149768578 no 118.922118976353 TraesCS5D01G505900 chr5D_531889107 chr5D 531889107 G G A A 4 missense_variant MODERATE transcript unique_Triplet 531886183 531889741 3559 1 0.0280977802753582 RFvsST 416206515 565975092 149768578 no 134.339009191118 TraesCS5D01G506200 chr5D_531996283 chr5D 531996283 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 531994168 531997842 3675 1 0.0272108843537415 RFvsST 416206515 565975092 149768578 no 287.372387955688 TraesCS5D01G509800 chr5D_534865089 chr5D 534865089 G T G T 3 missense_variant MODERATE transcript non_Triplet 534864327 534866881 2555 1 0.0391389432485323 RFvsST 416206515 565975092 149768578 no 798.878830517191 TraesCS5D01G512300 chr5D_536541493 chr5D 536541493 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 536536601 536541572 4972 1 0.0201126307320998 RFvsST 416206515 565975092 149768578 no 133.463400895117 TraesCS5D01G513600 chr5D_537675282 chr5D 537675282 C C T T 4 missense_variant MODERATE transcript unique_Triplet 537671747 537675332 3586 1 0.0278862242052426 RFvsST 416206515 565975092 149768578 no 249.111716487501 TraesCS5D01G523900 chr5D_543466842 chr5D 543466842 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 543464150 543465711 1562 2 0.128040973111396 RFvsST 416206515 565975092 149768578 no 19.2540089541648 TraesCS5D01G523900 chr5D_543466255 chr5D 543466255 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 543464150 543465711 1562 2 0.128040973111396 RFvsST 416206515 565975092 149768578 no 19.2540089541648 TraesCS5D01G524600 chr5D_543601324 chr5D 543601324 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 543596378 543600646 4269 1 0.0234246896228625 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G527100 chr5D_544612027 chr5D 544612027 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 544611938 544615116 3179 2 0.0629128656810318 RFvsST 416206515 565975092 149768578 no 421.735044048156 TraesCS5D01G527100 chr5D_544612028 chr5D 544612028 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 544611938 544615116 3179 2 0.0629128656810318 RFvsST 416206515 565975092 149768578 no 421.735044048156 TraesCS5D01G527500 chr5D_544697922 chr5D 544697922 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696377 chr5D 544696377 T T C C 4 missense_variant MODERATE transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544698157 chr5D 544698157 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544697315 chr5D 544697315 G G A A 4 synonymous_variant LOW transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696123 chr5D 544696123 C C A A 4 synonymous_variant LOW transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696489 chr5D 544696489 T T A A 4 synonymous_variant LOW transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696334 chr5D 544696334 C C T T 4 missense_variant MODERATE transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544697422 chr5D 544697422 A A T T 4 missense_variant MODERATE transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544698287 chr5D 544698287 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696678 chr5D 544696678 G G A A 4 synonymous_variant LOW transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696121 chr5D 544696121 T T C C 4 missense_variant MODERATE transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544698203 chr5D 544698203 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544698193 chr5D 544698193 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544697458 chr5D 544697458 T T C C 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527500 chr5D_544696309 chr5D 544696309 G G C C 4 synonymous_variant LOW transcript non_Triplet 544696018 544697911 1894 15 0.791974656810982 RFvsST 416206515 565975092 149768578 no 437.905161518369 TraesCS5D01G527900 chr5D_545112259 chr5D 545112259 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 545111386 545112999 1614 2 0.123915737298637 RFvsST 416206515 565975092 149768578 no 137.063977959553 TraesCS5D01G527900 chr5D_545112250 chr5D 545112250 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 545111386 545112999 1614 2 0.123915737298637 RFvsST 416206515 565975092 149768578 no 137.063977959553 TraesCS5D01G528300 chr5D_545213321 chr5D 545213321 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 545207505 545208941 1437 3 0.208768267223382 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G528300 chr5D_545213824 chr5D 545213824 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 545207505 545208941 1437 3 0.208768267223382 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G528300 chr5D_545211096 chr5D 545211096 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 545207505 545208941 1437 3 0.208768267223382 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G528500 chr5D_545224231 chr5D 545224231 G G C C 4 intron_variant MODIFIER transcript non_Triplet 545217147 545226582 9436 1 0.0105977108944468 RFvsST 416206515 565975092 149768578 no 2098.08387653325 TraesCS5D01G528700 chr5D_545524337 chr5D 545524337 A A T T 4 synonymous_variant LOW transcript non_Triplet 545523560 545525980 2421 1 0.0413052457662123 RFvsST 416206515 565975092 149768578 no 41.4704619373974 TraesCS5D01G529100 chr5D_545929487 chr5D 545929487 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 545926602 545929066 2465 4 0.162271805273834 RFvsST 416206515 565975092 149768578 no 21.0923972333039 TraesCS5D01G529100 chr5D_545929156 chr5D 545929156 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 545926602 545929066 2465 4 0.162271805273834 RFvsST 416206515 565975092 149768578 no 21.0923972333039 TraesCS5D01G529100 chr5D_545928602 chr5D 545928602 C C T T 4 synonymous_variant LOW transcript unique_Triplet 545926602 545929066 2465 4 0.162271805273834 RFvsST 416206515 565975092 149768578 no 21.0923972333039 TraesCS5D01G529100 chr5D_545932823 chr5D 545932823 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 545926602 545929066 2465 4 0.162271805273834 RFvsST 416206515 565975092 149768578 no 21.0923972333039 TraesCS5D01G529500 chr5D_546075196 chr5D 546075196 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 546075294 546077013 1720 4 0.232558139534884 RFvsST 416206515 565975092 149768578 no 56.7401692067331 TraesCS5D01G529500 chr5D_546075708 chr5D 546075708 A A G G 4 synonymous_variant LOW transcript unique_Triplet 546075294 546077013 1720 4 0.232558139534884 RFvsST 416206515 565975092 149768578 no 56.7401692067331 TraesCS5D01G529500 chr5D_546075696 chr5D 546075696 C C G G 4 synonymous_variant LOW transcript unique_Triplet 546075294 546077013 1720 4 0.232558139534884 RFvsST 416206515 565975092 149768578 no 56.7401692067331 TraesCS5D01G529500 chr5D_546075312 chr5D 546075312 C C G G 4 synonymous_variant LOW transcript unique_Triplet 546075294 546077013 1720 4 0.232558139534884 RFvsST 416206515 565975092 149768578 no 56.7401692067331 TraesCS5D01G532500 chr5D_547501175 chr5D 547501175 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 547501784 547528636 26853 2 0.00744795739768368 RFvsST 416206515 565975092 149768578 no 901.370982518802 TraesCS5D01G532500 chr5D_547501146 chr5D 547501146 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 547501784 547528636 26853 2 0.00744795739768368 RFvsST 416206515 565975092 149768578 no 901.370982518802 TraesCS5D01G533500 chr5D_547925248 chr5D 547925248 G G A A 4 synonymous_variant LOW transcript non_Triplet 547925029 547926357 1329 5 0.376222723852521 RFvsST 416206515 565975092 149768578 no 47.0934796800778 TraesCS5D01G533500 chr5D_547926478 chr5D 547926478 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 547925029 547926357 1329 5 0.376222723852521 RFvsST 416206515 565975092 149768578 no 47.0934796800778 TraesCS5D01G533500 chr5D_547925013 chr5D 547925013 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 547925029 547926357 1329 5 0.376222723852521 RFvsST 416206515 565975092 149768578 no 47.0934796800778 TraesCS5D01G533500 chr5D_547925009 chr5D 547925009 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 547925029 547926357 1329 5 0.376222723852521 RFvsST 416206515 565975092 149768578 no 47.0934796800778 TraesCS5D01G533500 chr5D_547926302 chr5D 547926302 C C A A 4 missense_variant MODERATE transcript non_Triplet 547925029 547926357 1329 5 0.376222723852521 RFvsST 416206515 565975092 149768578 no 47.0934796800778 TraesCS5D01G533700 chr5D_548001917 chr5D 548001917 T T A A 4 missense_variant MODERATE transcript unique_Triplet 547995839 548004507 8669 5 0.0576767793286423 RFvsST 416206515 565975092 149768578 no 56.7027605124081 TraesCS5D01G533700 chr5D_547996212 chr5D 547996212 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 547995839 548004507 8669 5 0.0576767793286423 RFvsST 416206515 565975092 149768578 no 56.7027605124081 TraesCS5D01G533700 chr5D_547996008 chr5D 547996008 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 547995839 548004507 8669 5 0.0576767793286423 RFvsST 416206515 565975092 149768578 no 56.7027605124081 TraesCS5D01G533700 chr5D_547996086 chr5D 547996086 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 547995839 548004507 8669 5 0.0576767793286423 RFvsST 416206515 565975092 149768578 no 56.7027605124081 TraesCS5D01G533700 chr5D_547999988 chr5D 547999988 G G A A 4 synonymous_variant LOW transcript unique_Triplet 547995839 548004507 8669 5 0.0576767793286423 RFvsST 416206515 565975092 149768578 no 56.7027605124081 TraesCS5D01G533800 chr5D_548024637 chr5D 548024637 G G A A 4 synonymous_variant LOW transcript non_Triplet 548023197 548031211 8015 1 0.0124766063630692 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G534000 chr5D_548350555 chr5D 548350555 G G T T 4 synonymous_variant LOW transcript unique_Triplet 548350025 548354317 4293 3 0.0698812019566736 RFvsST 416206515 565975092 149768578 no 46.4141594840294 TraesCS5D01G534000 chr5D_548351212 chr5D 548351212 C C A A 4 missense_variant MODERATE transcript unique_Triplet 548350025 548354317 4293 3 0.0698812019566736 RFvsST 416206515 565975092 149768578 no 46.4141594840294 TraesCS5D01G534000 chr5D_548354017 chr5D 548354017 T T C C 4 missense_variant MODERATE transcript unique_Triplet 548350025 548354317 4293 3 0.0698812019566736 RFvsST 416206515 565975092 149768578 no 46.4141594840294 TraesCS5D01G534100 chr5D_548366922 chr5D 548366922 A A C C 4 missense_variant MODERATE transcript unique_Triplet 548362425 548368664 6240 5 0.0801282051282051 RFvsST 416206515 565975092 149768578 no 157.375861699527 TraesCS5D01G534100 chr5D_548368505 chr5D 548368505 C C T T 4 synonymous_variant LOW transcript unique_Triplet 548362425 548368664 6240 5 0.0801282051282051 RFvsST 416206515 565975092 149768578 no 157.375861699527 TraesCS5D01G534100 chr5D_548368517 chr5D 548368517 C C T T 4 synonymous_variant LOW transcript unique_Triplet 548362425 548368664 6240 5 0.0801282051282051 RFvsST 416206515 565975092 149768578 no 157.375861699527 TraesCS5D01G534100 chr5D_548368508 chr5D 548368508 C C T T 4 synonymous_variant LOW transcript unique_Triplet 548362425 548368664 6240 5 0.0801282051282051 RFvsST 416206515 565975092 149768578 no 157.375861699527 TraesCS5D01G534100 chr5D_548368948 chr5D 548368948 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 548362425 548368664 6240 5 0.0801282051282051 RFvsST 416206515 565975092 149768578 no 157.375861699527 TraesCS5D01G534600 chr5D_548884027 chr5D 548884027 G G A A 4 synonymous_variant LOW transcript unique_Triplet 548879038 548884631 5594 3 0.0536288880943868 RFvsST 416206515 565975092 149768578 no 143.428832214734 TraesCS5D01G534600 chr5D_548880858 chr5D 548880858 C C T T 4 synonymous_variant LOW transcript unique_Triplet 548879038 548884631 5594 3 0.0536288880943868 RFvsST 416206515 565975092 149768578 no 143.428832214734 TraesCS5D01G534600 chr5D_548879329 chr5D 548879329 C C T T 4 missense_variant MODERATE transcript unique_Triplet 548879038 548884631 5594 3 0.0536288880943868 RFvsST 416206515 565975092 149768578 no 143.428832214734 TraesCS5D01G535800 chr5D_549579180 chr5D 549579180 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549574815 chr5D 549574815 A A T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549577116 chr5D 549577116 G G A A 4 synonymous_variant LOW transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549579278 chr5D 549579278 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549576055 chr5D 549576055 T T C C 4 missense_variant MODERATE transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549576047 chr5D 549576047 A A C C 4 missense_variant MODERATE transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G535800 chr5D_549579101 chr5D 549579101 C C T T 4 synonymous_variant LOW transcript unique_Triplet 549573738 549579467 5730 7 0.12216404886562 RFvsST 416206515 565975092 149768578 no 200.124395260165 TraesCS5D01G536000 chr5D_549630761 chr5D 549630761 C C G G 4 synonymous_variant LOW transcript unique_Triplet 549629702 549630893 1192 2 0.167785234899329 RFvsST 416206515 565975092 149768578 no 23.1645402668411 TraesCS5D01G536000 chr5D_549630901 chr5D 549630901 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 549629702 549630893 1192 2 0.167785234899329 RFvsST 416206515 565975092 149768578 no 23.1645402668411 TraesCS5D01G536500 chr5D_549773664 chr5D 549773664 C C G G 4 synonymous_variant LOW transcript unique_Triplet 549770718 549773672 2955 2 0.0676818950930626 RFvsST 416206515 565975092 149768578 no 177.321400650968 TraesCS5D01G536500 chr5D_549773730 chr5D 549773730 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 549770718 549773672 2955 2 0.0676818950930626 RFvsST 416206515 565975092 149768578 no 177.321400650968 TraesCS5D01G536700 chr5D_549855631 chr5D 549855631 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 549849526 549855098 5573 1 0.0179436569172797 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G536800 chr5D_549858200 chr5D 549858200 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549857054 chr5D 549857054 G G T T 4 synonymous_variant LOW transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549856474 chr5D 549856474 C C T T 4 missense_variant MODERATE transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549858502 chr5D 549858502 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549857162 chr5D 549857162 A A G G 4 synonymous_variant LOW transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549855699 chr5D 549855699 C C T T 4 splice_region_variant&stop_retained_variant LOW transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G536800 chr5D_549857080 chr5D 549857080 G G A A 4 missense_variant MODERATE transcript unique_Triplet 549855698 549858421 2724 7 0.25697503671072 RFvsST 416206515 565975092 149768578 no 94.024386663302 TraesCS5D01G537300 chr5D_549891073 chr5D 549891073 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 549886841 549890014 3174 3 0.0945179584120983 RFvsST 416206515 565975092 149768578 no 15.9455122502028 TraesCS5D01G537300 chr5D_549891028 chr5D 549891028 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 549886841 549890014 3174 3 0.0945179584120983 RFvsST 416206515 565975092 149768578 no 15.9455122502028 TraesCS5D01G537300 chr5D_549892380 chr5D 549892380 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 549886841 549890014 3174 3 0.0945179584120983 RFvsST 416206515 565975092 149768578 no 15.9455122502028 TraesCS5D01G537700 chr5D_550206259 chr5D 550206259 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550204629 550205947 1319 3 0.227445034116755 RFvsST 416206515 565975092 149768578 no 700.950837609796 TraesCS5D01G537700 chr5D_550206240 chr5D 550206240 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 550204629 550205947 1319 3 0.227445034116755 RFvsST 416206515 565975092 149768578 no 700.950837609796 TraesCS5D01G537700 chr5D_550204679 chr5D 550204679 A A C C 4 missense_variant MODERATE transcript unique_Triplet 550204629 550205947 1319 3 0.227445034116755 RFvsST 416206515 565975092 149768578 no 700.950837609796 TraesCS5D01G538200 chr5D_550439854 chr5D 550439854 G G T T 4 missense_variant MODERATE transcript unique_Triplet 550438655 550441873 3219 4 0.12426219322771 RFvsST 416206515 565975092 149768578 no 329.076778586966 TraesCS5D01G538200 chr5D_550438855 chr5D 550438855 A A G G 4 synonymous_variant LOW transcript unique_Triplet 550438655 550441873 3219 4 0.12426219322771 RFvsST 416206515 565975092 149768578 no 329.076778586966 TraesCS5D01G538200 chr5D_550438939 chr5D 550438939 T T C C 4 synonymous_variant LOW transcript unique_Triplet 550438655 550441873 3219 4 0.12426219322771 RFvsST 416206515 565975092 149768578 no 329.076778586966 TraesCS5D01G538200 chr5D_550440858 chr5D 550440858 T T C C 4 synonymous_variant LOW transcript unique_Triplet 550438655 550441873 3219 4 0.12426219322771 RFvsST 416206515 565975092 149768578 no 329.076778586966 TraesCS5D01G538300 chr5D_550510445 chr5D 550510445 T T A A 4 synonymous_variant LOW transcript unique_Triplet 550509748 550512140 2393 2 0.0835770998746344 RFvsST 416206515 565975092 149768578 no 65.4169088088507 TraesCS5D01G538300 chr5D_550510435 chr5D 550510435 G G A A 4 missense_variant MODERATE transcript unique_Triplet 550509748 550512140 2393 2 0.0835770998746344 RFvsST 416206515 565975092 149768578 no 65.4169088088507 TraesCS5D01G538800 chr5D_550639952 chr5D 550639952 C C G G 4 missense_variant MODERATE transcript unique_Triplet 550639107 550643605 4499 3 0.0666814847743943 RFvsST 416206515 565975092 149768578 no 112.819159519897 TraesCS5D01G538800 chr5D_550643402 chr5D 550643402 T T A A 4 missense_variant MODERATE transcript unique_Triplet 550639107 550643605 4499 3 0.0666814847743943 RFvsST 416206515 565975092 149768578 no 112.819159519897 TraesCS5D01G538800 chr5D_550640051 chr5D 550640051 C C G G 4 synonymous_variant LOW transcript unique_Triplet 550639107 550643605 4499 3 0.0666814847743943 RFvsST 416206515 565975092 149768578 no 112.819159519897 TraesCS5D01G549500 chr5D_556545794 chr5D 556545794 C T C T 3 missense_variant MODERATE transcript non_Triplet 556544925 556548106 3182 5 0.157133878064111 RFvsST 416206515 565975092 149768578 no 51.187092327263 TraesCS5D01G549500 chr5D_556549168 chr5D 556549168 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 556544925 556548106 3182 5 0.157133878064111 RFvsST 416206515 565975092 149768578 no 51.187092327263 TraesCS5D01G549500 chr5D_556549134 chr5D 556549134 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 556544925 556548106 3182 5 0.157133878064111 RFvsST 416206515 565975092 149768578 no 51.187092327263 TraesCS5D01G549500 chr5D_556549349 chr5D 556549349 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 556544925 556548106 3182 5 0.157133878064111 RFvsST 416206515 565975092 149768578 no 51.187092327263 TraesCS5D01G549500 chr5D_556549146 chr5D 556549146 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 556544925 556548106 3182 5 0.157133878064111 RFvsST 416206515 565975092 149768578 no 51.187092327263 TraesCS5D01G549600 chr5D_556556971 chr5D 556556971 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 556549608 556556744 7137 3 0.0420344682639765 RFvsST 416206515 565975092 149768578 no 40.1468669945232 TraesCS5D01G549600 chr5D_556556664 chr5D 556556664 T C T C 3 synonymous_variant LOW transcript non_Triplet 556549608 556556744 7137 3 0.0420344682639765 RFvsST 416206515 565975092 149768578 no 40.1468669945232 TraesCS5D01G549600 chr5D_556550461 chr5D 556550461 C T C T 3 missense_variant MODERATE transcript non_Triplet 556549608 556556744 7137 3 0.0420344682639765 RFvsST 416206515 565975092 149768578 no 40.1468669945232 TraesCS5D01G549800 chr5D_556618716 chr5D 556618716 A G A G 3 synonymous_variant LOW transcript unique_Triplet 556618323 556619774 1452 1 0.068870523415978 RFvsST 416206515 565975092 149768578 no 66.2103155547044 TraesCS5D01G550900 chr5D_557141408 chr5D 557141408 C C G G 4 synonymous_variant LOW transcript non_Triplet 557140935 557145591 4657 1 0.0214730513205927 RFvsST 416206515 565975092 149768578 no 714.863805021958 TraesCS5D01G553700 chr5D_558293905 chr5D 558293905 G G A A 4 synonymous_variant LOW transcript unique_Triplet 558284092 558295311 11220 1 0.0089126559714795 RFvsST 416206515 565975092 149768578 no 460.039013405457 TraesCS5D01G556700 chr5D_559729933 chr5D 559729933 T C T C 3 missense_variant MODERATE transcript unique_Triplet 559728554 559730740 2187 2 0.0914494741655235 RFvsST 416206515 565975092 149768578 no 58.6523670360246 TraesCS5D01G556700 chr5D_559728805 chr5D 559728805 G A G A 3 synonymous_variant LOW transcript unique_Triplet 559728554 559730740 2187 2 0.0914494741655235 RFvsST 416206515 565975092 149768578 no 58.6523670360246 TraesCS5D01G556800 chr5D_559731784 chr5D 559731784 T C T C 3 synonymous_variant LOW transcript unique_Triplet 559730516 559731931 1416 1 0.0706214689265537 RFvsST 416206515 565975092 149768578 no 21.5738813019135 TraesCS5D01G557100 chr5D_559856952 chr5D 559856952 C G C G 3 missense_variant MODERATE transcript unique_Triplet 559856920 559860983 4064 1 0.0246062992125984 RFvsST 416206515 565975092 149768578 no 37.2051831108677 TraesCS5D01G557500 chr5D_559920746 chr5D 559920746 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 559915710 559919498 3789 1 0.0263921879123779 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G557600 chr5D_559922461 chr5D 559922461 A G A G 3 synonymous_variant LOW transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559923691 chr5D 559923691 C T C T 3 synonymous_variant LOW transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559922356 chr5D 559922356 C G C G 3 missense_variant MODERATE transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559922067 chr5D 559922067 C T C T 3 missense_variant MODERATE transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559923469 chr5D 559923469 A T A T 3 synonymous_variant LOW transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559922811 chr5D 559922811 T G T G 3 missense_variant MODERATE transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G557600 chr5D_559926993 chr5D 559926993 T C T C 3 missense_variant MODERATE transcript unique_Triplet 559921945 559927074 5130 7 0.1364522417154 RFvsST 416206515 565975092 149768578 no 218.039604731913 TraesCS5D01G558400 chr5D_560228394 chr5D 560228394 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 560224825 560226183 1359 1 0.0735835172921266 RFvsST 416206515 565975092 149768578 no 72.5275468096691 TraesCS5D01G559300 chr5D_560791733 chr5D 560791733 G A G A 3 missense_variant MODERATE transcript non_Triplet 560789939 560791866 1928 1 0.0518672199170125 RFvsST 416206515 565975092 149768578 no 105.674713525898 TraesCS5D01G560300 chr5D_561431837 chr5D 561431837 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 561422607 561428223 5617 1 0.0178030977390066 RFvsST 416206515 565975092 149768578 no No_match TraesCS5D01G560600 chr5D_561675687 chr5D 561675687 A G A G 3 missense_variant MODERATE transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561673503 chr5D 561673503 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561673523 chr5D 561673523 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561676831 chr5D 561676831 T C T C 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561678161 chr5D 561678161 C T C T 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561675601 chr5D 561675601 T C T C 3 missense_variant MODERATE transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561677313 chr5D 561677313 A G A G 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561678340 chr5D 561678340 G T G T 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561678436 chr5D 561678436 T C T C 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560600 chr5D_561678361 chr5D 561678361 T C T C 3 synonymous_variant LOW transcript non_Triplet 561673605 561678505 4901 10 0.2040399918384 RFvsST 416206515 565975092 149768578 no 1064.38915000601 TraesCS5D01G560700 chr5D_561686462 chr5D 561686462 C A C A 3 missense_variant MODERATE transcript non_Triplet 561683302 561690143 6842 5 0.0730780473545747 RFvsST 416206515 565975092 149768578 no 72.0305997949318 TraesCS5D01G560700 chr5D_561689459 chr5D 561689459 G A G A 3 synonymous_variant LOW transcript non_Triplet 561683302 561690143 6842 5 0.0730780473545747 RFvsST 416206515 565975092 149768578 no 72.0305997949318 TraesCS5D01G560700 chr5D_561678573 chr5D 561678573 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 561683302 561690143 6842 5 0.0730780473545747 RFvsST 416206515 565975092 149768578 no 72.0305997949318 TraesCS5D01G560700 chr5D_561689427 chr5D 561689427 A G A G 3 missense_variant MODERATE transcript non_Triplet 561683302 561690143 6842 5 0.0730780473545747 RFvsST 416206515 565975092 149768578 no 72.0305997949318 TraesCS5D01G560700 chr5D_561689864 chr5D 561689864 C T C T 3 synonymous_variant LOW transcript non_Triplet 561683302 561690143 6842 5 0.0730780473545747 RFvsST 416206515 565975092 149768578 no 72.0305997949318 TraesCS5D01G560900 chr5D_561706204 chr5D 561706204 G A G A 3 synonymous_variant LOW transcript non_Triplet 561700775 561707677 6903 2 0.0289729103288425 RFvsST 416206515 565975092 149768578 no 97.807107954635 TraesCS5D01G560900 chr5D_561705375 chr5D 561705375 G A G A 3 synonymous_variant LOW transcript non_Triplet 561700775 561707677 6903 2 0.0289729103288425 RFvsST 416206515 565975092 149768578 no 97.807107954635 TraesCS5D01G561200 chr5D_561899871 chr5D 561899871 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561898021 chr5D 561898021 G A G A 3 missense_variant MODERATE transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561896574 chr5D 561896574 A T A T 3 missense_variant MODERATE transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561898895 chr5D 561898895 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561898026 chr5D 561898026 G A G A 3 missense_variant MODERATE transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561900068 chr5D 561900068 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561896453 chr5D 561896453 T C T C 3 synonymous_variant LOW transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G561200 chr5D_561896458 chr5D 561896458 A C A C 3 missense_variant MODERATE transcript non_Triplet 561895926 561898878 2953 8 0.270910938029123 RFvsST 416206515 565975092 149768578 no 209.309616371928 TraesCS5D01G562100 chr5D_562089103 chr5D 562089103 G C G C 3 synonymous_variant LOW transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562086671 chr5D 562086671 C T C T 3 synonymous_variant LOW transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562089207 chr5D 562089207 T A T A 3 missense_variant MODERATE transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562086833 chr5D 562086833 C T C T 3 synonymous_variant LOW transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562086845 chr5D 562086845 T G T G 3 synonymous_variant LOW transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562086650 chr5D 562086650 C T C T 3 synonymous_variant LOW transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562100 chr5D_562086010 chr5D 562086010 C A C A 3 stop_gained HIGH transcript non_Triplet 562085993 562090186 4194 7 0.16690510252742 RFvsST 416206515 565975092 149768578 no 169.335898608274 TraesCS5D01G562200 chr5D_562095836 chr5D 562095836 A G A G 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096965 chr5D 562096965 A G A G 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562095364 chr5D 562095364 C G C G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097481 chr5D 562097481 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097259 chr5D 562097259 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562095375 chr5D 562095375 T C T C 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096864 chr5D 562096864 C G C G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096320 chr5D 562096320 G A G A 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097998 chr5D 562097998 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097336 chr5D 562097336 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096974 chr5D 562096974 C T C T 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094263 chr5D 562094263 C T C T 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562095783 chr5D 562095783 C T C T 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097446 chr5D 562097446 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097350 chr5D 562097350 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097447 chr5D 562097447 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094170 chr5D 562094170 G A G A 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096511 chr5D 562096511 T G T G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094140 chr5D 562094140 G T G T 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094493 chr5D 562094493 T C T C 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562097338 chr5D 562097338 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562088452 chr5D 562088452 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094610 chr5D 562094610 C G C G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096622 chr5D 562096622 C T C T 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562093887 chr5D 562093887 C G C G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562095845 chr5D 562095845 C T C T 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094580 chr5D 562094580 T C T C 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562096234 chr5D 562096234 T C T C 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094766 chr5D 562094766 T G T G 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562093524 chr5D 562093524 C G C G 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094332 chr5D 562094332 G C G C 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562094266 chr5D 562094266 G A G A 3 missense_variant MODERATE transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562093597 chr5D 562093597 T G T G 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562200 chr5D_562095785 chr5D 562095785 C T C T 3 synonymous_variant LOW transcript non_Triplet 562093043 562097230 4188 34 0.811843361986628 RFvsST 416206515 565975092 149768578 no 375.713394957326 TraesCS5D01G562300 chr5D_562101015 chr5D 562101015 A G A G 3 synonymous_variant LOW transcript non_Triplet 562100772 562102427 1656 3 0.181159420289855 RFvsST 416206515 565975092 149768578 no 52.6696836684006 TraesCS5D01G562300 chr5D_562101266 chr5D 562101266 G A G A 3 synonymous_variant LOW transcript non_Triplet 562100772 562102427 1656 3 0.181159420289855 RFvsST 416206515 565975092 149768578 no 52.6696836684006 TraesCS5D01G562300 chr5D_562100796 chr5D 562100796 C T C T 3 synonymous_variant LOW transcript non_Triplet 562100772 562102427 1656 3 0.181159420289855 RFvsST 416206515 565975092 149768578 no 52.6696836684006 TraesCS5D01G562400 chr5D_562121632 chr5D 562121632 G T G T 3 synonymous_variant LOW transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562121483 chr5D 562121483 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562121845 chr5D 562121845 G A G A 3 synonymous_variant LOW transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562121967 chr5D 562121967 T C T C 3 missense_variant MODERATE transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562122282 chr5D 562122282 A T A T 3 missense_variant MODERATE transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562123798 chr5D 562123798 T G T G 3 synonymous_variant LOW transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562121912 chr5D 562121912 G A G A 3 missense_variant MODERATE transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562123758 chr5D 562123758 A G A G 3 synonymous_variant LOW transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562122347 chr5D 562122347 T C T C 3 missense_variant MODERATE transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562122672 chr5D 562122672 A G A G 3 missense_variant MODERATE transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562400 chr5D_562121851 chr5D 562121851 A G A G 3 synonymous_variant LOW transcript non_Triplet 562121301 562126864 5564 11 0.197699496764917 RFvsST 416206515 565975092 149768578 no 220.469031923195 TraesCS5D01G562500 chr5D_562338950 chr5D 562338950 G A G A 3 missense_variant MODERATE transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562337507 chr5D 562337507 C T C T 3 synonymous_variant LOW transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562336675 chr5D 562336675 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562338963 chr5D 562338963 G T G T 3 missense_variant MODERATE transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562337588 chr5D 562337588 C T C T 3 synonymous_variant LOW transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562337379 chr5D 562337379 C G C G 3 missense_variant MODERATE transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G562500 chr5D_562338720 chr5D 562338720 T C T C 3 synonymous_variant LOW transcript non_Triplet 562336860 562338975 2116 7 0.330812854442344 RFvsST 416206515 565975092 149768578 no 259.29754743324 TraesCS5D01G563800 chr5D_562652202 chr5D 562652202 G C G C 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652106 chr5D 562652106 T C T C 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652070 chr5D 562652070 A G A G 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648171 chr5D 562648171 A G A G 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652052 chr5D 562652052 C T C T 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651504 chr5D 562651504 G A G A 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651442 chr5D 562651442 G A G A 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648894 chr5D 562648894 C G C G 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652154 chr5D 562652154 C T C T 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651321 chr5D 562651321 G A G A 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648896 chr5D 562648896 A C A C 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562649314 chr5D 562649314 G C G C 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648168 chr5D 562648168 C T C T 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652370 chr5D 562652370 A C A C 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651160 chr5D 562651160 A G A G 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651294 chr5D 562651294 G A G A 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648301 chr5D 562648301 G C G C 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651000 chr5D 562651000 G T G T 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648857 chr5D 562648857 T C T C 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648296 chr5D 562648296 G C G C 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562648927 chr5D 562648927 C T C T 3 synonymous_variant LOW transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562651003 chr5D 562651003 C A C A 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562650786 chr5D 562650786 A C A C 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G563800 chr5D_562652393 chr5D 562652393 C G C G 3 missense_variant MODERATE transcript non_Triplet 562648050 562652469 4420 24 0.542986425339366 RFvsST 416206515 565975092 149768578 no 556.776727047575 TraesCS5D01G564100 chr5D_562831993 chr5D 562831993 C G C G 3 missense_variant MODERATE transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS5D01G564100 chr5D_562832990 chr5D 562832990 C T C T 3 synonymous_variant LOW transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS5D01G564100 chr5D_562832797 chr5D 562832797 G A G A 3 missense_variant MODERATE transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS5D01G564100 chr5D_562834847 chr5D 562834847 G A G A 3 synonymous_variant LOW transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS5D01G564100 chr5D_562832793 chr5D 562832793 C G C G 3 missense_variant MODERATE transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS5D01G564100 chr5D_562833257 chr5D 562833257 C T C T 3 synonymous_variant LOW transcript non_Triplet 562831922 562834971 3050 6 0.19672131147541 RFvsST 416206515 565975092 149768578 no 55.4533324754782 TraesCS6A01G000400 chr6A_287684 chr6A 287684 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 288242 290831 2590 4 0.154440154440154 RFvsST 103455 617686259 617582805 no 678.646049462304 TraesCS6A01G000400 chr6A_289738 chr6A 289738 C C T T 4 synonymous_variant LOW transcript unique_Triplet 288242 290831 2590 4 0.154440154440154 RFvsST 103455 617686259 617582805 no 678.646049462304 TraesCS6A01G000400 chr6A_287786 chr6A 287786 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 288242 290831 2590 4 0.154440154440154 RFvsST 103455 617686259 617582805 no 678.646049462304 TraesCS6A01G000400 chr6A_287796 chr6A 287796 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 288242 290831 2590 4 0.154440154440154 RFvsST 103455 617686259 617582805 no 678.646049462304 TraesCS6A01G008700 chr6A_3688771 chr6A 3688771 G G C C 4 missense_variant MODERATE transcript non_Triplet 3687889 3690253 2365 1 0.0422832980972516 RFvsST 103455 617686259 617582805 no 18.2326596418597 TraesCS6A01G017500 chr6A_8695045 chr6A 8695045 C C G G 4 missense_variant MODERATE transcript unique_Triplet 8694818 8700014 5197 1 0.0192418703097941 RFvsST 103455 617686259 617582805 no 4465.56642037992 TraesCS6A01G018700 chr6A_9053299 chr6A 9053299 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 9054306 9054875 570 1 0.175438596491228 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G019400 chr6A_9325496 chr6A 9325496 C T C T 3 synonymous_variant LOW transcript unique_Triplet 9321227 9327860 6634 4 0.0602954476936991 RFvsST 103455 617686259 617582805 no 398.699869013852 TraesCS6A01G019400 chr6A_9321758 chr6A 9321758 T T C C 4 missense_variant MODERATE transcript unique_Triplet 9321227 9327860 6634 4 0.0602954476936991 RFvsST 103455 617686259 617582805 no 398.699869013852 TraesCS6A01G019400 chr6A_9324413 chr6A 9324413 T C T C 3 missense_variant MODERATE transcript unique_Triplet 9321227 9327860 6634 4 0.0602954476936991 RFvsST 103455 617686259 617582805 no 398.699869013852 TraesCS6A01G019400 chr6A_9324410 chr6A 9324410 T T C C 4 synonymous_variant LOW transcript unique_Triplet 9321227 9327860 6634 4 0.0602954476936991 RFvsST 103455 617686259 617582805 no 398.699869013852 TraesCS6A01G021200 chr6A_10488246 chr6A 10488246 G G A A 4 missense_variant MODERATE transcript unique_Triplet 10488234 10489976 1743 4 0.229489386115892 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G021200 chr6A_10490095 chr6A 10490095 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 10488234 10489976 1743 4 0.229489386115892 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G021200 chr6A_10488957 chr6A 10488957 T C T C 3 synonymous_variant LOW transcript unique_Triplet 10488234 10489976 1743 4 0.229489386115892 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G021200 chr6A_10490251 chr6A 10490251 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 10488234 10489976 1743 4 0.229489386115892 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G022100 chr6A_11114767 chr6A 11114767 A G A G 3 synonymous_variant LOW transcript non_Triplet 11114665 11116444 1780 4 0.224719101123596 RFvsST 103455 617686259 617582805 no 182.65005476605 TraesCS6A01G022100 chr6A_11116049 chr6A 11116049 A G A G 3 synonymous_variant LOW transcript non_Triplet 11114665 11116444 1780 4 0.224719101123596 RFvsST 103455 617686259 617582805 no 182.65005476605 TraesCS6A01G022100 chr6A_11115959 chr6A 11115959 G A G A 3 synonymous_variant LOW transcript non_Triplet 11114665 11116444 1780 4 0.224719101123596 RFvsST 103455 617686259 617582805 no 182.65005476605 TraesCS6A01G022100 chr6A_11114962 chr6A 11114962 G G A A 4 synonymous_variant LOW transcript non_Triplet 11114665 11116444 1780 4 0.224719101123596 RFvsST 103455 617686259 617582805 no 182.65005476605 TraesCS6A01G022300 chr6A_11165435 chr6A 11165435 G T G T 3 synonymous_variant LOW transcript unique_Triplet 11162372 11170053 7682 4 0.0520697734964853 RFvsST 103455 617686259 617582805 no 24.4289292622648 TraesCS6A01G022300 chr6A_11163007 chr6A 11163007 G G T T 4 missense_variant MODERATE transcript unique_Triplet 11162372 11170053 7682 4 0.0520697734964853 RFvsST 103455 617686259 617582805 no 24.4289292622648 TraesCS6A01G022300 chr6A_11167720 chr6A 11167720 T T A A 4 missense_variant MODERATE transcript unique_Triplet 11162372 11170053 7682 4 0.0520697734964853 RFvsST 103455 617686259 617582805 no 24.4289292622648 TraesCS6A01G022300 chr6A_11163008 chr6A 11163008 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 11162372 11170053 7682 4 0.0520697734964853 RFvsST 103455 617686259 617582805 no 24.4289292622648 TraesCS6A01G022400 chr6A_11234354 chr6A 11234354 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 11232600 11236237 3638 1 0.0274876305662452 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G022500 chr6A_11250259 chr6A 11250259 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 11250003 11252353 2351 2 0.0850701829008932 RFvsST 103455 617686259 617582805 no 35.2598414247736 TraesCS6A01G022500 chr6A_11250363 chr6A 11250363 A G A G 3 synonymous_variant LOW transcript unique_Triplet 11250003 11252353 2351 2 0.0850701829008932 RFvsST 103455 617686259 617582805 no 35.2598414247736 TraesCS6A01G022600 chr6A_11269305 chr6A 11269305 C T C T 3 synonymous_variant LOW transcript unique_Triplet 11268403 11274033 5631 3 0.053276505061268 RFvsST 103455 617686259 617582805 no 9.90944981898676 TraesCS6A01G022600 chr6A_11274049 chr6A 11274049 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11268403 11274033 5631 3 0.053276505061268 RFvsST 103455 617686259 617582805 no 9.90944981898676 TraesCS6A01G022600 chr6A_11270380 chr6A 11270380 A T A T 3 synonymous_variant LOW transcript unique_Triplet 11268403 11274033 5631 3 0.053276505061268 RFvsST 103455 617686259 617582805 no 9.90944981898676 TraesCS6A01G024300 chr6A_12118841 chr6A 12118841 G G A A 4 intron_variant MODIFIER transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024300 chr6A_12118321 chr6A 12118321 G G A A 4 synonymous_variant LOW transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024300 chr6A_12118201 chr6A 12118201 A G A G 3 synonymous_variant LOW transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024300 chr6A_12118228 chr6A 12118228 A G A G 3 synonymous_variant LOW transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024300 chr6A_12118192 chr6A 12118192 T T C C 4 synonymous_variant LOW transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024300 chr6A_12118199 chr6A 12118199 A A G G 4 missense_variant MODERATE transcript non_Triplet 12117881 12120107 2227 6 0.269420745397396 RFvsST 103455 617686259 617582805 no 1250.81490817776 TraesCS6A01G024600 chr6A_12283604 chr6A 12283604 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12287610 chr6A 12287610 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12284695 chr6A 12284695 A C A C 3 missense_variant MODERATE transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12283609 chr6A 12283609 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12287449 chr6A 12287449 G G A A 4 missense_variant MODERATE transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12284696 chr6A 12284696 C C G G 4 missense_variant MODERATE transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024600 chr6A_12287421 chr6A 12287421 G G A A 4 synonymous_variant LOW transcript non_Triplet 12283648 12287475 3828 7 0.182863113897597 RFvsST 103455 617686259 617582805 no 94.9798241932195 TraesCS6A01G024900 chr6A_12387078 chr6A 12387078 C T C T 3 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G024900 chr6A_12391620 chr6A 12391620 T T A A 4 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G024900 chr6A_12386885 chr6A 12386885 G C G C 3 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G024900 chr6A_12387077 chr6A 12387077 A G A G 3 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G024900 chr6A_12391512 chr6A 12391512 A A G G 4 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G024900 chr6A_12387071 chr6A 12387071 C C G G 4 synonymous_variant LOW transcript unique_Triplet 12385928 12393549 7622 6 0.0787194961952244 RFvsST 103455 617686259 617582805 no 420.727960295798 TraesCS6A01G025700 chr6A_12837885 chr6A 12837885 C G T T,G 6 synonymous_variant LOW transcript unique_Triplet 12836534 12838190 1657 2 0.12070006035003 RFvsST 103455 617686259 617582805 no 1840.44699687784 TraesCS6A01G025700 chr6A_12836364 chr6A 12836364 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 12836534 12838190 1657 2 0.12070006035003 RFvsST 103455 617686259 617582805 no 1840.44699687784 TraesCS6A01G026100 chr6A_12958834 chr6A 12958834 C G C G 3 missense_variant MODERATE transcript non_Triplet 12958359 12959955 1597 4 0.250469630557295 RFvsST 103455 617686259 617582805 no 95.1302315840084 TraesCS6A01G026100 chr6A_12958907 chr6A 12958907 T C T C 3 missense_variant MODERATE transcript non_Triplet 12958359 12959955 1597 4 0.250469630557295 RFvsST 103455 617686259 617582805 no 95.1302315840084 TraesCS6A01G026100 chr6A_12959668 chr6A 12959668 T G T G 3 synonymous_variant LOW transcript non_Triplet 12958359 12959955 1597 4 0.250469630557295 RFvsST 103455 617686259 617582805 no 95.1302315840084 TraesCS6A01G026100 chr6A_12959035 chr6A 12959035 G A G A 3 synonymous_variant LOW transcript non_Triplet 12958359 12959955 1597 4 0.250469630557295 RFvsST 103455 617686259 617582805 no 95.1302315840084 TraesCS6A01G026300 chr6A_13067377 chr6A 13067377 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 13063092 13067056 3965 2 0.0504413619167718 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G026300 chr6A_13067405 chr6A 13067405 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 13063092 13067056 3965 2 0.0504413619167718 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G027900 chr6A_14301895 chr6A 14301895 C C T T 4 missense_variant MODERATE transcript unique_Triplet 14301738 14303192 1455 2 0.13745704467354 RFvsST 103455 617686259 617582805 no 2065.52680816285 TraesCS6A01G027900 chr6A_14303376 chr6A 14303376 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 14301738 14303192 1455 2 0.13745704467354 RFvsST 103455 617686259 617582805 no 2065.52680816285 TraesCS6A01G032600 chr6A_16232922 chr6A 16232922 T T C C 4 missense_variant MODERATE transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16230561 chr6A 16230561 G G A A 4 missense_variant MODERATE transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16232202 chr6A 16232202 A A G G 4 missense_variant MODERATE transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16233449 chr6A 16233449 A A G G 4 synonymous_variant LOW transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16234385 chr6A 16234385 C C T T 4 synonymous_variant LOW transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16229696 chr6A 16229696 C C G G 4 missense_variant MODERATE transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16234584 chr6A 16234584 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16228012 chr6A 16228012 C C G G 4 synonymous_variant LOW transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16234391 chr6A 16234391 C C T T 4 synonymous_variant LOW transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16226974 chr6A 16226974 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G032600 chr6A_16227510 chr6A 16227510 C C G G 4 synonymous_variant LOW transcript unique_Triplet 16226994 16234409 7416 11 0.148327939590076 RFvsST 103455 617686259 617582805 no 122.08305527066 TraesCS6A01G033700 chr6A_16462934 chr6A 16462934 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 16457190 16460732 3543 1 0.0282246683601468 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G033800 chr6A_16462904 chr6A 16462904 A A G G 4 missense_variant MODERATE transcript unique_Triplet 16462113 16462918 806 4 0.496277915632754 RFvsST 103455 617686259 617582805 no 76.7636300620298 TraesCS6A01G033800 chr6A_16462358 chr6A 16462358 C C G G 4 missense_variant MODERATE transcript unique_Triplet 16462113 16462918 806 4 0.496277915632754 RFvsST 103455 617686259 617582805 no 76.7636300620298 TraesCS6A01G033800 chr6A_16462128 chr6A 16462128 C C G G 4 missense_variant MODERATE transcript unique_Triplet 16462113 16462918 806 4 0.496277915632754 RFvsST 103455 617686259 617582805 no 76.7636300620298 TraesCS6A01G033800 chr6A_16462166 chr6A 16462166 C C G G 4 synonymous_variant LOW transcript unique_Triplet 16462113 16462918 806 4 0.496277915632754 RFvsST 103455 617686259 617582805 no 76.7636300620298 TraesCS6A01G034100 chr6A_16562354 chr6A 16562354 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 16558038 16560467 2430 3 0.123456790123457 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G034100 chr6A_16562448 chr6A 16562448 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 16558038 16560467 2430 3 0.123456790123457 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G034100 chr6A_16562455 chr6A 16562455 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 16558038 16560467 2430 3 0.123456790123457 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G034200 chr6A_16564884 chr6A 16564884 A A G G 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16562594 chr6A 16562594 C C T T 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16571778 chr6A 16571778 C C G G 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16566481 chr6A 16566481 A A G G 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16562752 chr6A 16562752 T T C C 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16564844 chr6A 16564844 C C A A 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16572500 chr6A 16572500 A A G G 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16571253 chr6A 16571253 C C T T 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565334 chr6A 16565334 A A C C 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16563030 chr6A 16563030 C C T T 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16562821 chr6A 16562821 C C T T 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16572343 chr6A 16572343 C C G G 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565625 chr6A 16565625 T T G G 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16571608 chr6A 16571608 G G A A 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565947 chr6A 16565947 A A T T 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16573718 chr6A 16573718 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565347 chr6A 16565347 C C T T 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16564814 chr6A 16564814 T T A A 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16571261 chr6A 16571261 G G A A 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16568578 chr6A 16568578 A A G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565578 chr6A 16565578 T T C C 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565593 chr6A 16565593 G G A A 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16566636 chr6A 16566636 G G A A 4 synonymous_variant LOW transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16565280 chr6A 16565280 A A G G 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G034200 chr6A_16570562 chr6A 16570562 T T C C 4 missense_variant MODERATE transcript unique_Triplet 16562503 16573593 11091 25 0.225407988459111 RFvsST 103455 617686259 617582805 no 769.434078409182 TraesCS6A01G035800 chr6A_17638551 chr6A 17638551 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638581 chr6A 17638581 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17639279 chr6A 17639279 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638976 chr6A 17638976 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638367 chr6A 17638367 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638643 chr6A 17638643 T T C C 4 synonymous_variant LOW transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638471 chr6A 17638471 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035800 chr6A_17638763 chr6A 17638763 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17638598 17640852 2255 8 0.354767184035477 RFvsST 103455 617686259 617582805 no 239.814520959079 TraesCS6A01G035900 chr6A_17662558 chr6A 17662558 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17654601 17658076 3476 2 0.0575373993095512 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G035900 chr6A_17662561 chr6A 17662561 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17654601 17658076 3476 2 0.0575373993095512 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G036000 chr6A_17667239 chr6A 17667239 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17662626 17667196 4571 5 0.109385254867644 RFvsST 103455 617686259 617582805 no 24.9431572890874 TraesCS6A01G036000 chr6A_17667246 chr6A 17667246 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17662626 17667196 4571 5 0.109385254867644 RFvsST 103455 617686259 617582805 no 24.9431572890874 TraesCS6A01G036000 chr6A_17667351 chr6A 17667351 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17662626 17667196 4571 5 0.109385254867644 RFvsST 103455 617686259 617582805 no 24.9431572890874 TraesCS6A01G036000 chr6A_17663038 chr6A 17663038 G G A A 4 synonymous_variant LOW transcript unique_Triplet 17662626 17667196 4571 5 0.109385254867644 RFvsST 103455 617686259 617582805 no 24.9431572890874 TraesCS6A01G036000 chr6A_17663026 chr6A 17663026 T T G G 4 synonymous_variant LOW transcript unique_Triplet 17662626 17667196 4571 5 0.109385254867644 RFvsST 103455 617686259 617582805 no 24.9431572890874 TraesCS6A01G036300 chr6A_17898405 chr6A 17898405 A A C C 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17900097 chr6A 17900097 G G A A 4 synonymous_variant LOW transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17901446 chr6A 17901446 G G T T 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17901831 chr6A 17901831 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17898518 chr6A 17898518 A A G G 4 synonymous_variant LOW transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17901855 chr6A 17901855 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17899355 chr6A 17899355 C C T T 4 synonymous_variant LOW transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17901450 chr6A 17901450 G G C C 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17899202 chr6A 17899202 A A G G 4 synonymous_variant LOW transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17898991 chr6A 17898991 A A C C 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17904013 chr6A 17904013 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17899406 chr6A 17899406 C C G G 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17904007 chr6A 17904007 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17903904 chr6A 17903904 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17898508 chr6A 17898508 T T C C 4 missense_variant MODERATE transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036300 chr6A_17901981 chr6A 17901981 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 17898032 17901658 3627 16 0.441135925006893 RFvsST 103455 617686259 617582805 no 333.237475823008 TraesCS6A01G036600 chr6A_17943070 chr6A 17943070 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17943214 17943438 225 2 0.888888888888889 RFvsST 103455 617686259 617582805 no 3429.26279811433 TraesCS6A01G036600 chr6A_17943138 chr6A 17943138 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 17943214 17943438 225 2 0.888888888888889 RFvsST 103455 617686259 617582805 no 3429.26279811433 TraesCS6A01G037400 chr6A_18520558 chr6A 18520558 T T A A 4 missense_variant MODERATE transcript unique_Triplet 18520226 18522461 2236 1 0.0447227191413238 RFvsST 103455 617686259 617582805 no 66.7509091870142 TraesCS6A01G037800 chr6A_18705984 chr6A 18705984 C C T T 4 missense_variant MODERATE transcript unique_Triplet 18705010 18708190 3181 4 0.125746620559572 RFvsST 103455 617686259 617582805 no 67.869166191016 TraesCS6A01G037800 chr6A_18706473 chr6A 18706473 T T C C 4 missense_variant MODERATE transcript unique_Triplet 18705010 18708190 3181 4 0.125746620559572 RFvsST 103455 617686259 617582805 no 67.869166191016 TraesCS6A01G037800 chr6A_18706958 chr6A 18706958 G A G A 3 missense_variant MODERATE transcript unique_Triplet 18705010 18708190 3181 4 0.125746620559572 RFvsST 103455 617686259 617582805 no 67.869166191016 TraesCS6A01G037800 chr6A_18706834 chr6A 18706834 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18705010 18708190 3181 4 0.125746620559572 RFvsST 103455 617686259 617582805 no 67.869166191016 TraesCS6A01G037900 chr6A_18712883 chr6A 18712883 C C T T 4 synonymous_variant LOW transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G037900 chr6A_18712805 chr6A 18712805 C T C T 3 synonymous_variant LOW transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G037900 chr6A_18712838 chr6A 18712838 G G A A 4 synonymous_variant LOW transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G037900 chr6A_18713168 chr6A 18713168 C G C G 3 missense_variant MODERATE transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G037900 chr6A_18712303 chr6A 18712303 A A G G 4 synonymous_variant LOW transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G037900 chr6A_18712106 chr6A 18712106 A A C C 4 missense_variant MODERATE transcript unique_Triplet 18711971 18713171 1201 6 0.499583680266445 RFvsST 103455 617686259 617582805 no 109.445483880346 TraesCS6A01G039200 chr6A_20251880 chr6A 20251880 G G A A 4 missense_variant MODERATE transcript unique_Triplet 20250677 20251903 1227 5 0.407497962510187 RFvsST 103455 617686259 617582805 no 107.1385971208 TraesCS6A01G039200 chr6A_20251657 chr6A 20251657 C C G G 4 synonymous_variant LOW transcript unique_Triplet 20250677 20251903 1227 5 0.407497962510187 RFvsST 103455 617686259 617582805 no 107.1385971208 TraesCS6A01G039200 chr6A_20250727 chr6A 20250727 G G A A 4 synonymous_variant LOW transcript unique_Triplet 20250677 20251903 1227 5 0.407497962510187 RFvsST 103455 617686259 617582805 no 107.1385971208 TraesCS6A01G039200 chr6A_20251990 chr6A 20251990 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 20250677 20251903 1227 5 0.407497962510187 RFvsST 103455 617686259 617582805 no 107.1385971208 TraesCS6A01G039200 chr6A_20251834 chr6A 20251834 G G A A 4 synonymous_variant LOW transcript unique_Triplet 20250677 20251903 1227 5 0.407497962510187 RFvsST 103455 617686259 617582805 no 107.1385971208 TraesCS6A01G041000 chr6A_21520519 chr6A 21520519 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21520729 chr6A 21520729 C C T T 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21522175 chr6A 21522175 T T C C 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21519326 chr6A 21519326 G G A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21519247 chr6A 21519247 A A G G 4 missense_variant MODERATE transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21521974 chr6A 21521974 A A T T 4 missense_variant MODERATE transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21522184 chr6A 21522184 G G A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21521450 chr6A 21521450 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21522118 chr6A 21522118 T T C C 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21520723 chr6A 21520723 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21522343 chr6A 21522343 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21519389 chr6A 21519389 A A C C 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21518828 chr6A 21518828 C C A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21520877 chr6A 21520877 C C T T 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21519246 chr6A 21519246 A A T T 4 missense_variant MODERATE transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21520871 chr6A 21520871 T T A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21521977 chr6A 21521977 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21520531 chr6A 21520531 T T A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041000 chr6A_21522337 chr6A 21522337 T T A A 4 synonymous_variant LOW transcript unique_Triplet 21517678 21522539 4862 19 0.390785684903332 RFvsST 103455 617686259 617582805 no 214.771515392342 TraesCS6A01G041900 chr6A_22168698 chr6A 22168698 G G C C 4 synonymous_variant LOW transcript unique_Triplet 22168390 22170174 1785 1 0.0560224089635854 RFvsST 103455 617686259 617582805 no 105.545237056249 TraesCS6A01G042600 chr6A_22446399 chr6A 22446399 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 22442891 22446356 3466 4 0.115406809001731 RFvsST 103455 617686259 617582805 no 1893.52517406132 TraesCS6A01G042600 chr6A_22446347 chr6A 22446347 G C T T,C 6 missense_variant MODERATE transcript non_Triplet 22442891 22446356 3466 4 0.115406809001731 RFvsST 103455 617686259 617582805 no 1893.52517406132 TraesCS6A01G042600 chr6A_22445618 chr6A 22445618 C C T T 4 synonymous_variant LOW transcript non_Triplet 22442891 22446356 3466 4 0.115406809001731 RFvsST 103455 617686259 617582805 no 1893.52517406132 TraesCS6A01G042600 chr6A_22443368 chr6A 22443368 A A G G 4 synonymous_variant LOW transcript non_Triplet 22442891 22446356 3466 4 0.115406809001731 RFvsST 103455 617686259 617582805 no 1893.52517406132 TraesCS6A01G042700 chr6A_22524400 chr6A 22524400 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 22522684 22523241 558 1 0.17921146953405 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G042800 chr6A_22531267 chr6A 22531267 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22524591 22530986 6396 5 0.0781738586616635 RFvsST 103455 617686259 617582805 no 38.0060073825371 TraesCS6A01G042800 chr6A_22528873 chr6A 22528873 C C T T 4 missense_variant MODERATE transcript unique_Triplet 22524591 22530986 6396 5 0.0781738586616635 RFvsST 103455 617686259 617582805 no 38.0060073825371 TraesCS6A01G042800 chr6A_22524617 chr6A 22524617 G G C C 4 missense_variant MODERATE transcript unique_Triplet 22524591 22530986 6396 5 0.0781738586616635 RFvsST 103455 617686259 617582805 no 38.0060073825371 TraesCS6A01G042800 chr6A_22528192 chr6A 22528192 G G A A 4 synonymous_variant LOW transcript unique_Triplet 22524591 22530986 6396 5 0.0781738586616635 RFvsST 103455 617686259 617582805 no 38.0060073825371 TraesCS6A01G042800 chr6A_22524661 chr6A 22524661 G G A A 4 missense_variant MODERATE transcript unique_Triplet 22524591 22530986 6396 5 0.0781738586616635 RFvsST 103455 617686259 617582805 no 38.0060073825371 TraesCS6A01G043200 chr6A_22685013 chr6A 22685013 C C T T 4 missense_variant MODERATE transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22684640 chr6A 22684640 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22685175 chr6A 22685175 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22684862 chr6A 22684862 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22684865 chr6A 22684865 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22685105 chr6A 22685105 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043200 chr6A_22684839 chr6A 22684839 C C T T 4 synonymous_variant LOW transcript unique_Triplet 22684641 22685117 477 7 1.46750524109015 RFvsST 103455 617686259 617582805 no 57.6513370934481 TraesCS6A01G043400 chr6A_22696936 chr6A 22696936 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G043400 chr6A_22696930 chr6A 22696930 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G043400 chr6A_22696285 chr6A 22696285 T G T G 3 synonymous_variant LOW transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G043400 chr6A_22696054 chr6A 22696054 T T C C 4 synonymous_variant LOW transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G043400 chr6A_22697129 chr6A 22697129 G A G A 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G043400 chr6A_22696282 chr6A 22696282 A G A G 3 synonymous_variant LOW transcript non_Triplet 22695202 22697206 2005 6 0.29925187032419 RFvsST 103455 617686259 617582805 no 180.938761290068 TraesCS6A01G045900 chr6A_23631139 chr6A 23631139 G G A A 4 synonymous_variant LOW transcript unique_Triplet 23627437 23631229 3793 1 0.0263643553915107 RFvsST 103455 617686259 617582805 no 20.7968091014649 TraesCS6A01G046300 chr6A_23722642 chr6A 23722642 T T A A 4 synonymous_variant LOW transcript unique_Triplet 23720878 23724749 3872 2 0.0516528925619835 RFvsST 103455 617686259 617582805 no 19.1441913010408 TraesCS6A01G046300 chr6A_23722621 chr6A 23722621 T T C C 4 synonymous_variant LOW transcript unique_Triplet 23720878 23724749 3872 2 0.0516528925619835 RFvsST 103455 617686259 617582805 no 19.1441913010408 TraesCS6A01G052500 chr6A_27108227 chr6A 27108227 C C T T 4 synonymous_variant LOW transcript non_Triplet 27099974 27108778 8805 1 0.0113571834185122 RFvsST 103455 617686259 617582805 no 206.60459972482 TraesCS6A01G057900 chr6A_30463784 chr6A 30463784 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 30464691 30467714 3024 1 0.0330687830687831 RFvsST 103455 617686259 617582805 no 2226.90053887756 TraesCS6A01G060700 chr6A_32661626 chr6A 32661626 C C G G 4 missense_variant MODERATE transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32659142 chr6A 32659142 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32658736 chr6A 32658736 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32659506 chr6A 32659506 G G C C 4 intron_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32662354 chr6A 32662354 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32659724 chr6A 32659724 A A C C 4 intron_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G060700 chr6A_32659224 chr6A 32659224 A A C C 4 intron_variant MODIFIER transcript unique_Triplet 32658028 32662149 4122 7 0.169820475497331 RFvsST 103455 617686259 617582805 no 1618.32443610277 TraesCS6A01G061000 chr6A_32796059 chr6A 32796059 A A C C 4 missense_variant MODERATE transcript non_Triplet 32795043 32796994 1952 3 0.153688524590164 RFvsST 103455 617686259 617582805 no 76.7251195121552 TraesCS6A01G061000 chr6A_32795821 chr6A 32795821 T T G G 4 missense_variant MODERATE transcript non_Triplet 32795043 32796994 1952 3 0.153688524590164 RFvsST 103455 617686259 617582805 no 76.7251195121552 TraesCS6A01G061000 chr6A_32795894 chr6A 32795894 G G A A 4 synonymous_variant LOW transcript non_Triplet 32795043 32796994 1952 3 0.153688524590164 RFvsST 103455 617686259 617582805 no 76.7251195121552 TraesCS6A01G063200 chr6A_33952584 chr6A 33952584 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 33952629 33953613 985 3 0.304568527918782 RFvsST 103455 617686259 617582805 no 1214.55410894897 TraesCS6A01G063200 chr6A_33952581 chr6A 33952581 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 33952629 33953613 985 3 0.304568527918782 RFvsST 103455 617686259 617582805 no 1214.55410894897 TraesCS6A01G063200 chr6A_33952841 chr6A 33952841 G G T T 4 synonymous_variant LOW transcript unique_Triplet 33952629 33953613 985 3 0.304568527918782 RFvsST 103455 617686259 617582805 no 1214.55410894897 TraesCS6A01G063900 chr6A_34071122 chr6A 34071122 C C A A 4 synonymous_variant LOW transcript non_Triplet 34070841 34071391 551 3 0.544464609800363 RFvsST 103455 617686259 617582805 no 81.3835991059147 TraesCS6A01G063900 chr6A_34071021 chr6A 34071021 C C G G 4 missense_variant MODERATE transcript non_Triplet 34070841 34071391 551 3 0.544464609800363 RFvsST 103455 617686259 617582805 no 81.3835991059147 TraesCS6A01G063900 chr6A_34071164 chr6A 34071164 C C G G 4 synonymous_variant LOW transcript non_Triplet 34070841 34071391 551 3 0.544464609800363 RFvsST 103455 617686259 617582805 no 81.3835991059147 TraesCS6A01G065400 chr6A_34980806 chr6A 34980806 T T C C 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981452 chr6A 34981452 T T A A 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981999 chr6A 34981999 G G T T 4 missense_variant MODERATE transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34982452 chr6A 34982452 A A G G 4 synonymous_variant LOW transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981236 chr6A 34981236 C C T T 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981982 chr6A 34981982 A A G G 4 synonymous_variant LOW transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34980725 chr6A 34980725 C C T T 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34980660 chr6A 34980660 T T C C 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981560 chr6A 34981560 G G A A 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34979145 chr6A 34979145 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981365 chr6A 34981365 C C T T 4 intron_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34981795 chr6A 34981795 C C T T 4 synonymous_variant LOW transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34982297 chr6A 34982297 G G C C 4 missense_variant MODERATE transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34982359 chr6A 34982359 T T C C 4 synonymous_variant LOW transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G065400 chr6A_34979208 chr6A 34979208 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 34980500 34982705 2206 15 0.679963735267452 RFvsST 103455 617686259 617582805 no 155.426505872731 TraesCS6A01G068000 chr6A_36429997 chr6A 36429997 G G A A 4 missense_variant MODERATE transcript unique_Triplet 36429965 36432913 2949 1 0.0339097999321804 RFvsST 103455 617686259 617582805 no 89.7205326871858 TraesCS6A01G068300 chr6A_36686287 chr6A 36686287 G G A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 36684239 36687107 2869 1 0.0348553502962705 RFvsST 103455 617686259 617582805 no 398.74635842621 TraesCS6A01G070500 chr6A_38467733 chr6A 38467733 A A G G 4 missense_variant MODERATE transcript unique_Triplet 38466674 38470515 3842 1 0.0260281103591879 RFvsST 103455 617686259 617582805 no 58.5266509488191 TraesCS6A01G071100 chr6A_38769577 chr6A 38769577 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 38768922 38770462 1541 2 0.129785853341986 RFvsST 103455 617686259 617582805 no 679.517074034819 TraesCS6A01G071100 chr6A_38770195 chr6A 38770195 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 38768922 38770462 1541 2 0.129785853341986 RFvsST 103455 617686259 617582805 no 679.517074034819 TraesCS6A01G072200 chr6A_39439235 chr6A 39439235 C C A A 4 synonymous_variant LOW transcript unique_Triplet 39438415 39439964 1550 2 0.129032258064516 RFvsST 103455 617686259 617582805 no 158.756895996595 TraesCS6A01G072200 chr6A_39438985 chr6A 39438985 G G T T 4 missense_variant MODERATE transcript unique_Triplet 39438415 39439964 1550 2 0.129032258064516 RFvsST 103455 617686259 617582805 no 158.756895996595 TraesCS6A01G072500 chr6A_39501893 chr6A 39501893 C C G G 4 missense_variant MODERATE transcript unique_Triplet 39495832 39505743 9912 1 0.010088781275222 RFvsST 103455 617686259 617582805 no 43.4573750858901 TraesCS6A01G077800 chr6A_47902563 chr6A 47902563 C C T T 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47901703 chr6A 47901703 A A G G 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47902161 chr6A 47902161 C C A A 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47898569 chr6A 47898569 G G A A 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47898506 chr6A 47898506 C C A A 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47903233 chr6A 47903233 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47903232 chr6A 47903232 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47902776 chr6A 47902776 C C G G 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47903018 chr6A 47903018 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47903126 chr6A 47903126 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47902091 chr6A 47902091 A A G G 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G077800 chr6A_47898858 chr6A 47898858 A A T T 4 synonymous_variant LOW transcript non_Triplet 47897563 47903227 5665 12 0.211827007943513 RFvsST 103455 617686259 617582805 no 603.488278979067 TraesCS6A01G078200 chr6A_48107012 chr6A 48107012 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078200 chr6A_48105593 chr6A 48105593 T T C C 4 synonymous_variant LOW transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078200 chr6A_48106998 chr6A 48106998 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078200 chr6A_48107109 chr6A 48107109 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078200 chr6A_48107086 chr6A 48107086 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078200 chr6A_48104741 chr6A 48104741 G G C C 4 synonymous_variant LOW transcript non_Triplet 48103575 48106963 3389 6 0.177043375627029 RFvsST 103455 617686259 617582805 no 7.92764818764826 TraesCS6A01G078400 chr6A_48193206 chr6A 48193206 T T A A 4 stop_lost&splice_region_variant HIGH transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193500 chr6A 48193500 G G C C 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193592 chr6A 48193592 C C A A 4 missense_variant MODERATE transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193470 chr6A 48193470 T T C C 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193410 chr6A 48193410 G G A A 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193515 chr6A 48193515 G G C C 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193812 chr6A 48193812 G G A A 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193842 chr6A 48193842 A A C C 4 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193210 chr6A 48193210 G G C C 4 missense_variant MODERATE transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193858 chr6A 48193858 G G A A 4 missense_variant MODERATE transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078400 chr6A_48193239 chr6A 48193239 C T C T 3 synonymous_variant LOW transcript unique_Triplet 48193206 48193904 699 11 1.57367668097282 RFvsST 103455 617686259 617582805 no 251.642660777505 TraesCS6A01G078900 chr6A_48557242 chr6A 48557242 C T C T 3 synonymous_variant LOW transcript unique_Triplet 48557197 48561002 3806 5 0.131371518654756 RFvsST 103455 617686259 617582805 no 331.764029158043 TraesCS6A01G078900 chr6A_48559238 chr6A 48559238 C T C T 3 synonymous_variant LOW transcript unique_Triplet 48557197 48561002 3806 5 0.131371518654756 RFvsST 103455 617686259 617582805 no 331.764029158043 TraesCS6A01G078900 chr6A_48559614 chr6A 48559614 T C T C 3 synonymous_variant LOW transcript unique_Triplet 48557197 48561002 3806 5 0.131371518654756 RFvsST 103455 617686259 617582805 no 331.764029158043 TraesCS6A01G078900 chr6A_48559823 chr6A 48559823 A C A C 3 missense_variant MODERATE transcript unique_Triplet 48557197 48561002 3806 5 0.131371518654756 RFvsST 103455 617686259 617582805 no 331.764029158043 TraesCS6A01G078900 chr6A_48560363 chr6A 48560363 C G C G 3 missense_variant MODERATE transcript unique_Triplet 48557197 48561002 3806 5 0.131371518654756 RFvsST 103455 617686259 617582805 no 331.764029158043 TraesCS6A01G079000 chr6A_48565461 chr6A 48565461 T C T C 3 missense_variant MODERATE transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48564157 chr6A 48564157 A G A G 3 synonymous_variant LOW transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48567155 chr6A 48567155 C T C T 3 synonymous_variant LOW transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48564284 chr6A 48564284 G A G A 3 missense_variant MODERATE transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48563789 chr6A 48563789 A G A G 3 synonymous_variant LOW transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48567081 chr6A 48567081 C T C T 3 missense_variant MODERATE transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48567125 chr6A 48567125 A G A G 3 synonymous_variant LOW transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G079000 chr6A_48563781 chr6A 48563781 C A C A 3 missense_variant MODERATE transcript unique_Triplet 48563765 48567172 3408 8 0.234741784037559 RFvsST 103455 617686259 617582805 no 86.1106117866374 TraesCS6A01G080600 chr6A_49195342 chr6A 49195342 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 49189763 49195158 5396 1 0.0185322461082283 RFvsST 103455 617686259 617582805 no 687.404054637797 TraesCS6A01G082300 chr6A_51398993 chr6A 51398993 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 51398946 51401083 2138 3 0.140318054256314 RFvsST 103455 617686259 617582805 no 347.253384840444 TraesCS6A01G082300 chr6A_51399093 chr6A 51399093 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 51398946 51401083 2138 3 0.140318054256314 RFvsST 103455 617686259 617582805 no 347.253384840444 TraesCS6A01G082300 chr6A_51398982 chr6A 51398982 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 51398946 51401083 2138 3 0.140318054256314 RFvsST 103455 617686259 617582805 no 347.253384840444 TraesCS6A01G082400 chr6A_51407731 chr6A 51407731 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 51406272 51409620 3349 4 0.119438638399522 RFvsST 103455 617686259 617582805 no 1340.3992667129 TraesCS6A01G082400 chr6A_51409059 chr6A 51409059 G T G T 3 intron_variant MODIFIER transcript unique_Triplet 51406272 51409620 3349 4 0.119438638399522 RFvsST 103455 617686259 617582805 no 1340.3992667129 TraesCS6A01G082400 chr6A_51406429 chr6A 51406429 T T C C 4 missense_variant MODERATE transcript unique_Triplet 51406272 51409620 3349 4 0.119438638399522 RFvsST 103455 617686259 617582805 no 1340.3992667129 TraesCS6A01G082400 chr6A_51408240 chr6A 51408240 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 51406272 51409620 3349 4 0.119438638399522 RFvsST 103455 617686259 617582805 no 1340.3992667129 TraesCS6A01G082800 chr6A_51507980 chr6A 51507980 C T C T 3 synonymous_variant LOW transcript unique_Triplet 51499405 51511975 12571 4 0.0318192665659057 RFvsST 103455 617686259 617582805 no 280.388012083935 TraesCS6A01G082800 chr6A_51507500 chr6A 51507500 T T C C 4 synonymous_variant LOW transcript unique_Triplet 51499405 51511975 12571 4 0.0318192665659057 RFvsST 103455 617686259 617582805 no 280.388012083935 TraesCS6A01G082800 chr6A_51508638 chr6A 51508638 T T C C 4 synonymous_variant LOW transcript unique_Triplet 51499405 51511975 12571 4 0.0318192665659057 RFvsST 103455 617686259 617582805 no 280.388012083935 TraesCS6A01G082800 chr6A_51508031 chr6A 51508031 G G T T 4 synonymous_variant LOW transcript unique_Triplet 51499405 51511975 12571 4 0.0318192665659057 RFvsST 103455 617686259 617582805 no 280.388012083935 TraesCS6A01G082900 chr6A_51760625 chr6A 51760625 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 51760690 51761577 888 1 0.112612612612613 RFvsST 103455 617686259 617582805 no 281.369074363262 TraesCS6A01G083200 chr6A_51951759 chr6A 51951759 G G T T 4 missense_variant MODERATE transcript unique_Triplet 51947908 51953052 5145 1 0.0194363459669582 RFvsST 103455 617686259 617582805 no 128.129849859715 TraesCS6A01G083400 chr6A_52019883 chr6A 52019883 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 52019649 52023519 3871 1 0.0258331180573495 RFvsST 103455 617686259 617582805 no 70.8309131785539 TraesCS6A01G083900 chr6A_52296237 chr6A 52296237 G G A A 4 synonymous_variant LOW transcript unique_Triplet 52295717 52304644 8928 2 0.0224014336917563 RFvsST 103455 617686259 617582805 no 223.176781211229 TraesCS6A01G083900 chr6A_52304536 chr6A 52304536 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 52295717 52304644 8928 2 0.0224014336917563 RFvsST 103455 617686259 617582805 no 223.176781211229 TraesCS6A01G087000 chr6A_55701032 chr6A 55701032 C T C T 3 synonymous_variant LOW transcript non_Triplet 55700400 55705336 4937 1 0.0202552157180474 RFvsST 103455 617686259 617582805 no 69.1915941800212 TraesCS6A01G088700 chr6A_57660032 chr6A 57660032 C C A A 4 missense_variant MODERATE transcript non_Triplet 57655537 57660059 4523 1 0.0221092195445501 RFvsST 103455 617686259 617582805 no 69.89731998308 TraesCS6A01G094100 chr6A_61401110 chr6A 61401110 C C T T 4 synonymous_variant LOW transcript non_Triplet 61400526 61401326 801 1 0.124843945068664 RFvsST 103455 617686259 617582805 no 752.118597196179 TraesCS6A01G096300 chr6A_63609921 chr6A 63609921 T C T C 3 synonymous_variant LOW transcript unique_Triplet 63609831 63610355 525 1 0.19047619047619 RFvsST 103455 617686259 617582805 no 156.91035854338 TraesCS6A01G096600 chr6A_63782034 chr6A 63782034 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 63782433 63786447 4015 2 0.049813200498132 RFvsST 103455 617686259 617582805 no 192.051381950423 TraesCS6A01G096600 chr6A_63783130 chr6A 63783130 T C T C 3 missense_variant MODERATE transcript unique_Triplet 63782433 63786447 4015 2 0.049813200498132 RFvsST 103455 617686259 617582805 no 192.051381950423 TraesCS6A01G096700 chr6A_64064840 chr6A 64064840 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 64064974 64066056 1083 1 0.0923361034164358 RFvsST 103455 617686259 617582805 no 41.1210682077232 TraesCS6A01G097800 chr6A_65066575 chr6A 65066575 G A G A 3 synonymous_variant LOW transcript unique_Triplet 65063697 65066590 2894 1 0.0345542501727713 RFvsST 103455 617686259 617582805 no 407.451515586093 TraesCS6A01G097900 chr6A_65072590 chr6A 65072590 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 65067946 65072451 4506 1 0.0221926320461607 RFvsST 103455 617686259 617582805 no 77.4669970540371 TraesCS6A01G098300 chr6A_65436729 chr6A 65436729 T C T C 3 synonymous_variant LOW transcript non_Triplet 65434293 65437226 2934 3 0.102249488752556 RFvsST 103455 617686259 617582805 no 95.4926329273313 TraesCS6A01G098300 chr6A_65434314 chr6A 65434314 G C G C 3 missense_variant MODERATE transcript non_Triplet 65434293 65437226 2934 3 0.102249488752556 RFvsST 103455 617686259 617582805 no 95.4926329273313 TraesCS6A01G098300 chr6A_65434444 chr6A 65434444 C T C T 3 missense_variant MODERATE transcript non_Triplet 65434293 65437226 2934 3 0.102249488752556 RFvsST 103455 617686259 617582805 no 95.4926329273313 TraesCS6A01G098400 chr6A_65655547 chr6A 65655547 C T C T 3 missense_variant MODERATE transcript unique_Triplet 65655124 65657863 2740 1 0.0364963503649635 RFvsST 103455 617686259 617582805 no 44.1151873494105 TraesCS6A01G098500 chr6A_65682137 chr6A 65682137 C G C G 3 missense_variant MODERATE transcript unique_Triplet 65681766 65684520 2755 2 0.0725952813067151 RFvsST 103455 617686259 617582805 no 211.293576735926 TraesCS6A01G098500 chr6A_65682132 chr6A 65682132 T C T C 3 missense_variant MODERATE transcript unique_Triplet 65681766 65684520 2755 2 0.0725952813067151 RFvsST 103455 617686259 617582805 no 211.293576735926 TraesCS6A01G098900 chr6A_65855958 chr6A 65855958 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 65856073 65866066 9994 4 0.0400240144086452 RFvsST 103455 617686259 617582805 no 237.608746071309 TraesCS6A01G098900 chr6A_65856119 chr6A 65856119 T C T C 3 missense_variant MODERATE transcript non_Triplet 65856073 65866066 9994 4 0.0400240144086452 RFvsST 103455 617686259 617582805 no 237.608746071309 TraesCS6A01G098900 chr6A_65866141 chr6A 65866141 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 65856073 65866066 9994 4 0.0400240144086452 RFvsST 103455 617686259 617582805 no 237.608746071309 TraesCS6A01G098900 chr6A_65857560 chr6A 65857560 T C T C 3 synonymous_variant LOW transcript non_Triplet 65856073 65866066 9994 4 0.0400240144086452 RFvsST 103455 617686259 617582805 no 237.608746071309 TraesCS6A01G099000 chr6A_66302349 chr6A 66302349 G A G A 3 synonymous_variant LOW transcript unique_Triplet 66302048 66302967 920 1 0.108695652173913 RFvsST 103455 617686259 617582805 no 66.4534640001263 TraesCS6A01G099200 chr6A_66430533 chr6A 66430533 C T C T 3 missense_variant MODERATE transcript non_Triplet 66430198 66433818 3621 3 0.0828500414250207 RFvsST 103455 617686259 617582805 no 601.117809787875 TraesCS6A01G099200 chr6A_66432806 chr6A 66432806 G A G A 3 synonymous_variant LOW transcript non_Triplet 66430198 66433818 3621 3 0.0828500414250207 RFvsST 103455 617686259 617582805 no 601.117809787875 TraesCS6A01G099200 chr6A_66434038 chr6A 66434038 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 66430198 66433818 3621 3 0.0828500414250207 RFvsST 103455 617686259 617582805 no 601.117809787875 TraesCS6A01G099400 chr6A_67058277 chr6A 67058277 C T C T 3 synonymous_variant LOW transcript unique_Triplet 67057893 67061393 3501 1 0.0285632676378178 RFvsST 103455 617686259 617582805 no 45.7999790474216 TraesCS6A01G099900 chr6A_67373583 chr6A 67373583 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 67374799 67378182 3384 1 0.0295508274231678 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G101300 chr6A_69354897 chr6A 69354897 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 69349423 69351090 1668 2 0.119904076738609 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G101300 chr6A_69354594 chr6A 69354594 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 69349423 69351090 1668 2 0.119904076738609 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G101700 chr6A_70426419 chr6A 70426419 A G A G 3 missense_variant MODERATE transcript unique_Triplet 70425513 70428084 2572 2 0.0777604976671851 RFvsST 103455 617686259 617582805 no 133.31933851676 TraesCS6A01G101700 chr6A_70427177 chr6A 70427177 T C T C 3 synonymous_variant LOW transcript unique_Triplet 70425513 70428084 2572 2 0.0777604976671851 RFvsST 103455 617686259 617582805 no 133.31933851676 TraesCS6A01G101800 chr6A_70569837 chr6A 70569837 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 70569844 70573012 3169 1 0.0315556958030925 RFvsST 103455 617686259 617582805 no 3071.34248434129 TraesCS6A01G102100 chr6A_71066840 chr6A 71066840 T C T C 3 synonymous_variant LOW transcript unique_Triplet 71066160 71067892 1733 2 0.115406809001731 RFvsST 103455 617686259 617582805 no 325.043577410267 TraesCS6A01G102100 chr6A_71067908 chr6A 71067908 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 71066160 71067892 1733 2 0.115406809001731 RFvsST 103455 617686259 617582805 no 325.043577410267 TraesCS6A01G102200 chr6A_71444667 chr6A 71444667 G C G C 3 synonymous_variant LOW transcript unique_Triplet 71442847 71445843 2997 3 0.1001001001001 RFvsST 103455 617686259 617582805 no 174.387728344551 TraesCS6A01G102200 chr6A_71442921 chr6A 71442921 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 71442847 71445843 2997 3 0.1001001001001 RFvsST 103455 617686259 617582805 no 174.387728344551 TraesCS6A01G102200 chr6A_71442929 chr6A 71442929 G T G T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 71442847 71445843 2997 3 0.1001001001001 RFvsST 103455 617686259 617582805 no 174.387728344551 TraesCS6A01G102600 chr6A_71545652 chr6A 71545652 T C T C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 71544044 71548480 4437 1 0.0225377507324769 RFvsST 103455 617686259 617582805 no 19.8296453997613 TraesCS6A01G102700 chr6A_71705421 chr6A 71705421 T G T G 3 missense_variant MODERATE transcript unique_Triplet 71698954 71706624 7671 1 0.0130361100247686 RFvsST 103455 617686259 617582805 no 1001.94417010452 TraesCS6A01G104000 chr6A_73303137 chr6A 73303137 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 73298531 73303555 5025 4 0.0796019900497512 RFvsST 103455 617686259 617582805 no 283.639087889194 TraesCS6A01G104000 chr6A_73301004 chr6A 73301004 A G A G 3 synonymous_variant LOW transcript unique_Triplet 73298531 73303555 5025 4 0.0796019900497512 RFvsST 103455 617686259 617582805 no 283.639087889194 TraesCS6A01G104000 chr6A_73301342 chr6A 73301342 A G A G 3 missense_variant MODERATE transcript unique_Triplet 73298531 73303555 5025 4 0.0796019900497512 RFvsST 103455 617686259 617582805 no 283.639087889194 TraesCS6A01G104000 chr6A_73301232 chr6A 73301232 A G A G 3 synonymous_variant LOW transcript unique_Triplet 73298531 73303555 5025 4 0.0796019900497512 RFvsST 103455 617686259 617582805 no 283.639087889194 TraesCS6A01G104200 chr6A_73380129 chr6A 73380129 A G A G 3 missense_variant MODERATE transcript non_Triplet 73379156 73383337 4182 1 0.0239120038259206 RFvsST 103455 617686259 617582805 no 78.3050810605439 TraesCS6A01G104800 chr6A_73576061 chr6A 73576061 C T C T 3 synonymous_variant LOW transcript unique_Triplet 73564100 73576121 12022 1 0.00831808351355848 RFvsST 103455 617686259 617582805 no 61.8420383459161 TraesCS6A01G104900 chr6A_73640023 chr6A 73640023 C T C T 3 missense_variant MODERATE transcript unique_Triplet 73637967 73642170 4204 1 0.0237868696479543 RFvsST 103455 617686259 617582805 no 49.8199712170184 TraesCS6A01G105900 chr6A_74026228 chr6A 74026228 T C T C 3 missense_variant MODERATE transcript unique_Triplet 74025506 74030905 5400 3 0.0555555555555556 RFvsST 103455 617686259 617582805 no 150.387448158173 TraesCS6A01G105900 chr6A_74025854 chr6A 74025854 T C T C 3 missense_variant MODERATE transcript unique_Triplet 74025506 74030905 5400 3 0.0555555555555556 RFvsST 103455 617686259 617582805 no 150.387448158173 TraesCS6A01G105900 chr6A_74030477 chr6A 74030477 C T C T 3 synonymous_variant LOW transcript unique_Triplet 74025506 74030905 5400 3 0.0555555555555556 RFvsST 103455 617686259 617582805 no 150.387448158173 TraesCS6A01G107200 chr6A_75368220 chr6A 75368220 C G C G 3 synonymous_variant LOW transcript unique_Triplet 75365524 75370938 5415 2 0.0369344413665743 RFvsST 103455 617686259 617582805 no 222.878853795979 TraesCS6A01G107200 chr6A_75371075 chr6A 75371075 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 75365524 75370938 5415 2 0.0369344413665743 RFvsST 103455 617686259 617582805 no 222.878853795979 TraesCS6A01G107300 chr6A_75916423 chr6A 75916423 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 75905807 75916751 10945 3 0.0274097761534947 RFvsST 103455 617686259 617582805 no 486.467873133446 TraesCS6A01G107300 chr6A_75905489 chr6A 75905489 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 75905807 75916751 10945 3 0.0274097761534947 RFvsST 103455 617686259 617582805 no 486.467873133446 TraesCS6A01G107300 chr6A_75912743 chr6A 75912743 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 75905807 75916751 10945 3 0.0274097761534947 RFvsST 103455 617686259 617582805 no 486.467873133446 TraesCS6A01G107400 chr6A_75917244 chr6A 75917244 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75919016 75921881 2866 4 0.139567341242149 RFvsST 103455 617686259 617582805 no 61.5072539552949 TraesCS6A01G107400 chr6A_75917220 chr6A 75917220 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75919016 75921881 2866 4 0.139567341242149 RFvsST 103455 617686259 617582805 no 61.5072539552949 TraesCS6A01G107400 chr6A_75921735 chr6A 75921735 G G A A 4 missense_variant MODERATE transcript unique_Triplet 75919016 75921881 2866 4 0.139567341242149 RFvsST 103455 617686259 617582805 no 61.5072539552949 TraesCS6A01G107400 chr6A_75921731 chr6A 75921731 T C T C 3 synonymous_variant LOW transcript unique_Triplet 75919016 75921881 2866 4 0.139567341242149 RFvsST 103455 617686259 617582805 no 61.5072539552949 TraesCS6A01G107700 chr6A_76519692 chr6A 76519692 T C T C 3 synonymous_variant LOW transcript unique_Triplet 76513610 76524351 10742 4 0.03723701359151 RFvsST 103455 617686259 617582805 no 195.590283279325 TraesCS6A01G107700 chr6A_76523929 chr6A 76523929 C A C A 3 missense_variant MODERATE transcript unique_Triplet 76513610 76524351 10742 4 0.03723701359151 RFvsST 103455 617686259 617582805 no 195.590283279325 TraesCS6A01G107700 chr6A_76524317 chr6A 76524317 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 76513610 76524351 10742 4 0.03723701359151 RFvsST 103455 617686259 617582805 no 195.590283279325 TraesCS6A01G107700 chr6A_76513974 chr6A 76513974 A G A G 3 synonymous_variant LOW transcript unique_Triplet 76513610 76524351 10742 4 0.03723701359151 RFvsST 103455 617686259 617582805 no 195.590283279325 TraesCS6A01G107800 chr6A_76625554 chr6A 76625554 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 76625349 76630685 5337 5 0.0936855911560802 RFvsST 103455 617686259 617582805 no 175.455624947929 TraesCS6A01G107800 chr6A_76625816 chr6A 76625816 C G C G 3 synonymous_variant LOW transcript unique_Triplet 76625349 76630685 5337 5 0.0936855911560802 RFvsST 103455 617686259 617582805 no 175.455624947929 TraesCS6A01G107800 chr6A_76630515 chr6A 76630515 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 76625349 76630685 5337 5 0.0936855911560802 RFvsST 103455 617686259 617582805 no 175.455624947929 TraesCS6A01G107800 chr6A_76630151 chr6A 76630151 A C A C 3 missense_variant MODERATE transcript unique_Triplet 76625349 76630685 5337 5 0.0936855911560802 RFvsST 103455 617686259 617582805 no 175.455624947929 TraesCS6A01G107800 chr6A_76625486 chr6A 76625486 T C T C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 76625349 76630685 5337 5 0.0936855911560802 RFvsST 103455 617686259 617582805 no 175.455624947929 TraesCS6A01G107900 chr6A_76632081 chr6A 76632081 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 76630948 76634555 3608 1 0.0277161862527716 RFvsST 103455 617686259 617582805 no 8.02499535685888 TraesCS6A01G108600 chr6A_77513029 chr6A 77513029 G A G A 3 synonymous_variant LOW transcript unique_Triplet 77511528 77514473 2946 3 0.10183299389002 RFvsST 103455 617686259 617582805 no 111.709988624366 TraesCS6A01G108600 chr6A_77513544 chr6A 77513544 T C T C 3 synonymous_variant LOW transcript unique_Triplet 77511528 77514473 2946 3 0.10183299389002 RFvsST 103455 617686259 617582805 no 111.709988624366 TraesCS6A01G108600 chr6A_77513224 chr6A 77513224 G A G A 3 synonymous_variant LOW transcript unique_Triplet 77511528 77514473 2946 3 0.10183299389002 RFvsST 103455 617686259 617582805 no 111.709988624366 TraesCS6A01G109200 chr6A_77896221 chr6A 77896221 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 77889712 77891409 1698 1 0.0588928150765607 RFvsST 103455 617686259 617582805 no 9.63592460064583 TraesCS6A01G111200 chr6A_80691002 chr6A 80691002 A A G G 4 missense_variant MODERATE transcript unique_Triplet 80686075 80691013 4939 1 0.0202470135654991 RFvsST 103455 617686259 617582805 no 90.5129738129673 TraesCS6A01G112800 chr6A_82960921 chr6A 82960921 C A C A 3 stop_gained HIGH transcript unique_Triplet 82952554 82960928 8375 1 0.0119402985074627 RFvsST 103455 617686259 617582805 no 10.1332196126225 TraesCS6A01G114900 chr6A_84922242 chr6A 84922242 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 84921980 84927833 5854 1 0.017082336863683 RFvsST 103455 617686259 617582805 no 1254.49045376136 TraesCS6A01G115100 chr6A_85017995 chr6A 85017995 C A C A 3 synonymous_variant LOW transcript unique_Triplet 85017929 85020723 2795 1 0.035778175313059 RFvsST 103455 617686259 617582805 no 742.511481646942 TraesCS6A01G115800 chr6A_85591892 chr6A 85591892 T C T C 3 synonymous_variant LOW transcript unique_Triplet 85591022 85592278 1257 1 0.0795544948289578 RFvsST 103455 617686259 617582805 no 110.917003169704 TraesCS6A01G115900 chr6A_85750848 chr6A 85750848 G A G A 3 synonymous_variant LOW transcript unique_Triplet 85747879 85751727 3849 2 0.0519615484541439 RFvsST 103455 617686259 617582805 no 705.938653227734 TraesCS6A01G115900 chr6A_85749903 chr6A 85749903 C T C T 3 synonymous_variant LOW transcript unique_Triplet 85747879 85751727 3849 2 0.0519615484541439 RFvsST 103455 617686259 617582805 no 705.938653227734 TraesCS6A01G116000 chr6A_85756301 chr6A 85756301 T G T G 3 missense_variant MODERATE transcript unique_Triplet 85753963 85758260 4298 5 0.116333178222429 RFvsST 103455 617686259 617582805 no 78.3099416438161 TraesCS6A01G116000 chr6A_85757289 chr6A 85757289 C T C T 3 synonymous_variant LOW transcript unique_Triplet 85753963 85758260 4298 5 0.116333178222429 RFvsST 103455 617686259 617582805 no 78.3099416438161 TraesCS6A01G116000 chr6A_85756445 chr6A 85756445 C T C T 3 missense_variant MODERATE transcript unique_Triplet 85753963 85758260 4298 5 0.116333178222429 RFvsST 103455 617686259 617582805 no 78.3099416438161 TraesCS6A01G116000 chr6A_85755487 chr6A 85755487 A C A C 3 synonymous_variant LOW transcript unique_Triplet 85753963 85758260 4298 5 0.116333178222429 RFvsST 103455 617686259 617582805 no 78.3099416438161 TraesCS6A01G116000 chr6A_85757727 chr6A 85757727 C T C T 3 missense_variant MODERATE transcript unique_Triplet 85753963 85758260 4298 5 0.116333178222429 RFvsST 103455 617686259 617582805 no 78.3099416438161 TraesCS6A01G116200 chr6A_86118974 chr6A 86118974 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 86115842 86118789 2948 2 0.067842605156038 RFvsST 103455 617686259 617582805 no 1052.7393299522 TraesCS6A01G116200 chr6A_86118895 chr6A 86118895 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 86115842 86118789 2948 2 0.067842605156038 RFvsST 103455 617686259 617582805 no 1052.7393299522 TraesCS6A01G116400 chr6A_86486226 chr6A 86486226 A G A G 3 synonymous_variant LOW transcript unique_Triplet 86485713 86487161 1449 5 0.345065562456867 RFvsST 103455 617686259 617582805 no 166.47988210688 TraesCS6A01G116400 chr6A_86486664 chr6A 86486664 A G A G 3 synonymous_variant LOW transcript unique_Triplet 86485713 86487161 1449 5 0.345065562456867 RFvsST 103455 617686259 617582805 no 166.47988210688 TraesCS6A01G116400 chr6A_86486430 chr6A 86486430 G C G C 3 synonymous_variant LOW transcript unique_Triplet 86485713 86487161 1449 5 0.345065562456867 RFvsST 103455 617686259 617582805 no 166.47988210688 TraesCS6A01G116400 chr6A_86486436 chr6A 86486436 C G C G 3 synonymous_variant LOW transcript unique_Triplet 86485713 86487161 1449 5 0.345065562456867 RFvsST 103455 617686259 617582805 no 166.47988210688 TraesCS6A01G116400 chr6A_86486319 chr6A 86486319 G A G A 3 synonymous_variant LOW transcript unique_Triplet 86485713 86487161 1449 5 0.345065562456867 RFvsST 103455 617686259 617582805 no 166.47988210688 TraesCS6A01G116500 chr6A_87242948 chr6A 87242948 A C A C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 87242950 87249486 6537 2 0.0305950741930549 RFvsST 103455 617686259 617582805 no 186.977116544232 TraesCS6A01G116500 chr6A_87245965 chr6A 87245965 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 87242950 87249486 6537 2 0.0305950741930549 RFvsST 103455 617686259 617582805 no 186.977116544232 TraesCS6A01G116600 chr6A_87297147 chr6A 87297147 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 87292203 87296667 4465 2 0.0447928331466965 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G116600 chr6A_87297168 chr6A 87297168 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 87292203 87296667 4465 2 0.0447928331466965 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G116700 chr6A_87301615 chr6A 87301615 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 87298447 87298593 147 1 0.680272108843537 RFvsST 103455 617686259 617582805 no 24.478617769133 TraesCS6A01G117100 chr6A_87651849 chr6A 87651849 G A G A 3 synonymous_variant LOW transcript unique_Triplet 87647743 87652296 4554 4 0.0878348704435661 RFvsST 103455 617686259 617582805 no 89.6492153970501 TraesCS6A01G117100 chr6A_87651066 chr6A 87651066 T G T G 3 missense_variant MODERATE transcript unique_Triplet 87647743 87652296 4554 4 0.0878348704435661 RFvsST 103455 617686259 617582805 no 89.6492153970501 TraesCS6A01G117100 chr6A_87649294 chr6A 87649294 G A G A 3 missense_variant MODERATE transcript unique_Triplet 87647743 87652296 4554 4 0.0878348704435661 RFvsST 103455 617686259 617582805 no 89.6492153970501 TraesCS6A01G117100 chr6A_87649146 chr6A 87649146 T C T C 3 missense_variant MODERATE transcript unique_Triplet 87647743 87652296 4554 4 0.0878348704435661 RFvsST 103455 617686259 617582805 no 89.6492153970501 TraesCS6A01G117200 chr6A_87653780 chr6A 87653780 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 87653276 87653743 468 1 0.213675213675214 RFvsST 103455 617686259 617582805 no 60.4805195644356 TraesCS6A01G117400 chr6A_87907391 chr6A 87907391 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 87906877 87907344 468 2 0.427350427350427 RFvsST 103455 617686259 617582805 no 68.1192053239902 TraesCS6A01G117400 chr6A_87906852 chr6A 87906852 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 87906877 87907344 468 2 0.427350427350427 RFvsST 103455 617686259 617582805 no 68.1192053239902 TraesCS6A01G117600 chr6A_88070738 chr6A 88070738 T C T C 3 missense_variant MODERATE transcript unique_Triplet 88064175 88071535 7361 2 0.0271702214373047 RFvsST 103455 617686259 617582805 no 93.3902295741005 TraesCS6A01G117600 chr6A_88064318 chr6A 88064318 C T C T 3 synonymous_variant LOW transcript unique_Triplet 88064175 88071535 7361 2 0.0271702214373047 RFvsST 103455 617686259 617582805 no 93.3902295741005 TraesCS6A01G117900 chr6A_88772441 chr6A 88772441 C A C A 3 synonymous_variant LOW transcript unique_Triplet 88763712 88773957 10246 1 0.00975990630489947 RFvsST 103455 617686259 617582805 no 11.8507631836988 TraesCS6A01G121500 chr6A_93813516 chr6A 93813516 T G T G 3 missense_variant MODERATE transcript unique_Triplet 93810320 93814897 4578 1 0.0218435998252512 RFvsST 103455 617686259 617582805 no 1802.9195211422 TraesCS6A01G123400 chr6A_96987372 chr6A 96987372 T T C C 4 missense_variant MODERATE transcript unique_Triplet 96985186 96989666 4481 1 0.0223164472216023 RFvsST 103455 617686259 617582805 no 767.636809450934 TraesCS6A01G130900 chr6A_102997371 chr6A 102997371 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 102997841 103007167 9327 1 0.0107215610592902 RFvsST 103455 617686259 617582805 no 226.429206611702 TraesCS6A01G131200 chr6A_103758813 chr6A 103758813 G A G A 3 synonymous_variant LOW transcript non_Triplet 103758342 103758950 609 1 0.164203612479475 RFvsST 103455 617686259 617582805 no 28.2330534753379 TraesCS6A01G131400 chr6A_103958719 chr6A 103958719 G A G A 3 synonymous_variant LOW transcript unique_Triplet 103953871 103958758 4888 4 0.0818330605564648 RFvsST 103455 617686259 617582805 no 64.8275357775666 TraesCS6A01G131400 chr6A_103953783 chr6A 103953783 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 103953871 103958758 4888 4 0.0818330605564648 RFvsST 103455 617686259 617582805 no 64.8275357775666 TraesCS6A01G131400 chr6A_103955291 chr6A 103955291 T C T C 3 synonymous_variant LOW transcript unique_Triplet 103953871 103958758 4888 4 0.0818330605564648 RFvsST 103455 617686259 617582805 no 64.8275357775666 TraesCS6A01G131400 chr6A_103954188 chr6A 103954188 C G C G 3 synonymous_variant LOW transcript unique_Triplet 103953871 103958758 4888 4 0.0818330605564648 RFvsST 103455 617686259 617582805 no 64.8275357775666 TraesCS6A01G131900 chr6A_104115612 chr6A 104115612 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 104113050 104114036 987 1 0.101317122593718 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G132800 chr6A_105012399 chr6A 105012399 A C A C 3 synonymous_variant LOW transcript unique_Triplet 105012292 105022376 10085 3 0.029747149231532 RFvsST 103455 617686259 617582805 no 39.8174839748388 TraesCS6A01G132800 chr6A_105022354 chr6A 105022354 A T A T 3 missense_variant MODERATE transcript unique_Triplet 105012292 105022376 10085 3 0.029747149231532 RFvsST 103455 617686259 617582805 no 39.8174839748388 TraesCS6A01G132800 chr6A_105022578 chr6A 105022578 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 105012292 105022376 10085 3 0.029747149231532 RFvsST 103455 617686259 617582805 no 39.8174839748388 TraesCS6A01G133000 chr6A_105182177 chr6A 105182177 C G C G 3 missense_variant MODERATE transcript unique_Triplet 105178483 105182182 3700 1 0.027027027027027 RFvsST 103455 617686259 617582805 no 68.3467224740012 TraesCS6A01G133700 chr6A_105872521 chr6A 105872521 C T C T 3 missense_variant MODERATE transcript non_Triplet 105871047 105872676 1630 2 0.122699386503067 RFvsST 103455 617686259 617582805 no 98.2614890299463 TraesCS6A01G133700 chr6A_105872624 chr6A 105872624 A C A C 3 missense_variant MODERATE transcript non_Triplet 105871047 105872676 1630 2 0.122699386503067 RFvsST 103455 617686259 617582805 no 98.2614890299463 TraesCS6A01G134400 chr6A_106798518 chr6A 106798518 C A C A 3 synonymous_variant LOW transcript unique_Triplet 106798120 106801340 3221 1 0.0310462589257994 RFvsST 103455 617686259 617582805 no 97.8107912919291 TraesCS6A01G135100 chr6A_107113578 chr6A 107113578 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 107111934 107113379 1446 2 0.138312586445367 RFvsST 103455 617686259 617582805 no 283.839069666157 TraesCS6A01G135100 chr6A_107113248 chr6A 107113248 A G A G 3 synonymous_variant LOW transcript non_Triplet 107111934 107113379 1446 2 0.138312586445367 RFvsST 103455 617686259 617582805 no 283.839069666157 TraesCS6A01G135300 chr6A_107175672 chr6A 107175672 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 107171045 107175705 4661 5 0.10727311735679 RFvsST 103455 617686259 617582805 no 22.2743618509261 TraesCS6A01G135300 chr6A_107174965 chr6A 107174965 A T A T 3 missense_variant MODERATE transcript nonUnique_Triplet 107171045 107175705 4661 5 0.10727311735679 RFvsST 103455 617686259 617582805 no 22.2743618509261 TraesCS6A01G135300 chr6A_107174878 chr6A 107174878 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 107171045 107175705 4661 5 0.10727311735679 RFvsST 103455 617686259 617582805 no 22.2743618509261 TraesCS6A01G135300 chr6A_107175749 chr6A 107175749 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 107171045 107175705 4661 5 0.10727311735679 RFvsST 103455 617686259 617582805 no 22.2743618509261 TraesCS6A01G135300 chr6A_107175464 chr6A 107175464 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 107171045 107175705 4661 5 0.10727311735679 RFvsST 103455 617686259 617582805 no 22.2743618509261 TraesCS6A01G135500 chr6A_107208496 chr6A 107208496 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 107210775 107213222 2448 1 0.0408496732026144 RFvsST 103455 617686259 617582805 no 21.8389767337187 TraesCS6A01G135600 chr6A_107216118 chr6A 107216118 C T C T 3 missense_variant MODERATE transcript non_Triplet 107214458 107217103 2646 4 0.151171579743008 RFvsST 103455 617686259 617582805 no 150.46019748635 TraesCS6A01G135600 chr6A_107215536 chr6A 107215536 T C T C 3 missense_variant MODERATE transcript non_Triplet 107214458 107217103 2646 4 0.151171579743008 RFvsST 103455 617686259 617582805 no 150.46019748635 TraesCS6A01G135600 chr6A_107215426 chr6A 107215426 A G A G 3 synonymous_variant LOW transcript non_Triplet 107214458 107217103 2646 4 0.151171579743008 RFvsST 103455 617686259 617582805 no 150.46019748635 TraesCS6A01G135600 chr6A_107215231 chr6A 107215231 G A G A 3 synonymous_variant LOW transcript non_Triplet 107214458 107217103 2646 4 0.151171579743008 RFvsST 103455 617686259 617582805 no 150.46019748635 TraesCS6A01G136600 chr6A_107700569 chr6A 107700569 C T C T 3 intron_variant MODIFIER transcript nonUnique_Triplet 107692104 107701399 9296 2 0.0215146299483649 RFvsST 103455 617686259 617582805 no 1686.22828549174 TraesCS6A01G136600 chr6A_107692042 chr6A 107692042 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 107692104 107701399 9296 2 0.0215146299483649 RFvsST 103455 617686259 617582805 no 1686.22828549174 TraesCS6A01G136700 chr6A_107797301 chr6A 107797301 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 107797521 107798928 1408 4 0.284090909090909 RFvsST 103455 617686259 617582805 no 1388.0727387844 TraesCS6A01G136700 chr6A_107797326 chr6A 107797326 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 107797521 107798928 1408 4 0.284090909090909 RFvsST 103455 617686259 617582805 no 1388.0727387844 TraesCS6A01G136700 chr6A_107799164 chr6A 107799164 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 107797521 107798928 1408 4 0.284090909090909 RFvsST 103455 617686259 617582805 no 1388.0727387844 TraesCS6A01G136700 chr6A_107799532 chr6A 107799532 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 107797521 107798928 1408 4 0.284090909090909 RFvsST 103455 617686259 617582805 no 1388.0727387844 TraesCS6A01G137100 chr6A_108180627 chr6A 108180627 G A G A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 108179526 108180731 1206 2 0.165837479270315 RFvsST 103455 617686259 617582805 no 116.992008058328 TraesCS6A01G137100 chr6A_108180565 chr6A 108180565 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 108179526 108180731 1206 2 0.165837479270315 RFvsST 103455 617686259 617582805 no 116.992008058328 TraesCS6A01G138100 chr6A_109382859 chr6A 109382859 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 109382925 109386603 3679 2 0.0543625985322098 RFvsST 103455 617686259 617582805 no 36.3405592370906 TraesCS6A01G138100 chr6A_109382850 chr6A 109382850 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 109382925 109386603 3679 2 0.0543625985322098 RFvsST 103455 617686259 617582805 no 36.3405592370906 TraesCS6A01G138200 chr6A_109386793 chr6A 109386793 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 109389275 109389634 360 1 0.277777777777778 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G138500 chr6A_109495475 chr6A 109495475 C T C T 3 synonymous_variant LOW transcript unique_Triplet 109493510 109496164 2655 1 0.0376647834274953 RFvsST 103455 617686259 617582805 no 4.46729868510833 TraesCS6A01G138600 chr6A_109987064 chr6A 109987064 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 109983416 109988274 4859 2 0.0411607326610414 RFvsST 103455 617686259 617582805 no 81.7399756948662 TraesCS6A01G138600 chr6A_109987873 chr6A 109987873 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 109983416 109988274 4859 2 0.0411607326610414 RFvsST 103455 617686259 617582805 no 81.7399756948662 TraesCS6A01G139400 chr6A_113517456 chr6A 113517456 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 113515230 113517611 2382 1 0.0419815281276238 RFvsST 103455 617686259 617582805 no 58.7479154293438 TraesCS6A01G140200 chr6A_115030401 chr6A 115030401 C T C T 3 synonymous_variant LOW transcript non_Triplet 115027135 115030654 3520 1 0.0284090909090909 RFvsST 103455 617686259 617582805 no 17.8111013990435 TraesCS6A01G140300 chr6A_115277809 chr6A 115277809 C T C T 3 synonymous_variant LOW transcript unique_Triplet 115270876 115278220 7345 2 0.0272294077603812 RFvsST 103455 617686259 617582805 no 199.649198534952 TraesCS6A01G140300 chr6A_115270820 chr6A 115270820 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 115270876 115278220 7345 2 0.0272294077603812 RFvsST 103455 617686259 617582805 no 199.649198534952 TraesCS6A01G153300 chr6A_140607700 chr6A 140607700 G A G A 3 synonymous_variant LOW transcript unique_Triplet 140605488 140607976 2489 1 0.0401767778224186 RFvsST 103455 617686259 617582805 no 69.301778356787 TraesCS6A01G155600 chr6A_144513082 chr6A 144513082 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 144517737 144520458 2722 1 0.0367376928728876 RFvsST 103455 617686259 617582805 no 117.088066275026 TraesCS6A01G158900 chr6A_150969665 chr6A 150969665 C T C T 3 missense_variant MODERATE transcript unique_Triplet 150965085 150969942 4858 1 0.0205846027171676 RFvsST 103455 617686259 617582805 no 165.93765854796 TraesCS6A01G166000 chr6A_168115342 chr6A 168115342 C C T T 4 missense_variant MODERATE transcript unique_Triplet 168115098 168118324 3227 1 0.0309885342423303 RFvsST 103455 617686259 617582805 no 3203.07231409152 TraesCS6A01G176500 chr6A_194751491 chr6A 194751491 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 194745761 194747829 2069 2 0.096665055582407 RFvsST 103455 617686259 617582805 no 22.9396305713155 TraesCS6A01G176500 chr6A_194745074 chr6A 194745074 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 194745761 194747829 2069 2 0.096665055582407 RFvsST 103455 617686259 617582805 no 22.9396305713155 TraesCS6A01G178700 chr6A_200945618 chr6A 200945618 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 200945671 200950031 4361 1 0.0229305205228159 RFvsST 103455 617686259 617582805 no 12.5897132124955 TraesCS6A01G183300 chr6A_213149508 chr6A 213149508 G G A A 4 missense_variant MODERATE transcript unique_Triplet 213149030 213150289 1260 1 0.0793650793650794 RFvsST 103455 617686259 617582805 no 225.593490742072 TraesCS6A01G187700 chr6A_224279767 chr6A 224279767 G A G A 3 intron_variant MODIFIER transcript unique_Triplet 224278504 224282037 3534 1 0.0282965478211658 RFvsST 103455 617686259 617582805 no 2364.50455523338 TraesCS6A01G188200 chr6A_229084235 chr6A 229084235 G T G T 3 missense_variant MODERATE transcript non_Triplet 229083941 229087039 3099 1 0.0322684737011939 RFvsST 103455 617686259 617582805 no 259.959449180831 TraesCS6A01G190200 chr6A_250712260 chr6A 250712260 G G A A 4 synonymous_variant LOW transcript unique_Triplet 250710869 250726520 15652 1 0.00638895987733197 RFvsST 103455 617686259 617582805 no 257.437131473333 TraesCS6A01G192800 chr6A_263887720 chr6A 263887720 T A T A 3 missense_variant MODERATE transcript non_Triplet 263871489 263911961 40473 1 0.00247078299112989 RFvsST 103455 617686259 617582805 no 982.432188872611 TraesCS6A01G196500 chr6A_288407274 chr6A 288407274 T T C C 4 intron_variant MODIFIER transcript non_Triplet 288405441 288414730 9290 1 0.0107642626480086 RFvsST 103455 617686259 617582805 no 38.0071784140763 TraesCS6A01G197900 chr6A_299985820 chr6A 299985820 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 299982141 299985807 3667 1 0.0272702481592582 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G199000 chr6A_311853385 chr6A 311853385 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 311856576 311861790 5215 1 0.0191754554170662 RFvsST 103455 617686259 617582805 no 28.8711250632719 TraesCS6A01G203400 chr6A_346571975 chr6A 346571975 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 346575118 346588415 13298 1 0.00751992780869304 RFvsST 103455 617686259 617582805 no 78.3661195658812 TraesCS6A01G203800 chr6A_351828831 chr6A 351828831 G G A A 4 missense_variant MODERATE transcript non_Triplet 351828416 351833075 4660 1 0.0214592274678112 RFvsST 103455 617686259 617582805 no 81.2611699536842 TraesCS6A01G210000 chr6A_381025911 chr6A 381025911 G C G C 3 missense_variant MODERATE transcript unique_Triplet 381025658 381028549 2892 1 0.0345781466113416 RFvsST 103455 617686259 617582805 no 130.548066634651 TraesCS6A01G212300 chr6A_384967517 chr6A 384967517 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 384966841 384969820 2980 1 0.0335570469798658 RFvsST 103455 617686259 617582805 no 106.349544293951 TraesCS6A01G214000 chr6A_389957861 chr6A 389957861 G G C C 4 synonymous_variant LOW transcript unique_Triplet 389954091 389959402 5312 1 0.0188253012048193 RFvsST 103455 617686259 617582805 no 566.351101294667 TraesCS6A01G220800 chr6A_410579813 chr6A 410579813 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 410574345 410578708 4364 1 0.0229147571035747 RFvsST 103455 617686259 617582805 no 10.511930981163 TraesCS6A01G220900 chr6A_410581286 chr6A 410581286 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 410580047 410584130 4084 1 0.0244857982370225 RFvsST 103455 617686259 617582805 no 247.94477575317 TraesCS6A01G221400 chr6A_411095188 chr6A 411095188 C A C A 3 missense_variant MODERATE transcript unique_Triplet 411083900 411102812 18913 1 0.00528736847670914 RFvsST 103455 617686259 617582805 no 52.2486967832336 TraesCS6A01G221700 chr6A_412371682 chr6A 412371682 T C T C 3 missense_variant MODERATE transcript non_Triplet 412363785 412385133 21349 1 0.00468406014333224 RFvsST 103455 617686259 617582805 no 160.434086775662 TraesCS6A01G222400 chr6A_416250861 chr6A 416250861 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 416252711 416252926 216 1 0.462962962962963 RFvsST 103455 617686259 617582805 no 22.3175627743581 TraesCS6A01G231100 chr6A_435782206 chr6A 435782206 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 435774470 435779642 5173 1 0.01933114247052 RFvsST 103455 617686259 617582805 no 77.8208689786223 TraesCS6A01G238100 chr6A_447831193 chr6A 447831193 G A G A 3 missense_variant MODERATE transcript non_Triplet 447831120 447833857 2738 1 0.0365230094959825 RFvsST 103455 617686259 617582805 no 22.0614340541229 TraesCS6A01G238900 chr6A_448353523 chr6A 448353523 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 448353304 448357269 3966 2 0.0504286434694907 RFvsST 103455 617686259 617582805 no 334.755049381367 TraesCS6A01G238900 chr6A_448353385 chr6A 448353385 A C A C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 448353304 448357269 3966 2 0.0504286434694907 RFvsST 103455 617686259 617582805 no 334.755049381367 TraesCS6A01G239100 chr6A_448660943 chr6A 448660943 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 448659809 448664118 4310 4 0.0928074245939675 RFvsST 103455 617686259 617582805 no 134.77928750317 TraesCS6A01G239100 chr6A_448661276 chr6A 448661276 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 448659809 448664118 4310 4 0.0928074245939675 RFvsST 103455 617686259 617582805 no 134.77928750317 TraesCS6A01G239100 chr6A_448661013 chr6A 448661013 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 448659809 448664118 4310 4 0.0928074245939675 RFvsST 103455 617686259 617582805 no 134.77928750317 TraesCS6A01G239100 chr6A_448659853 chr6A 448659853 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 448659809 448664118 4310 4 0.0928074245939675 RFvsST 103455 617686259 617582805 no 134.77928750317 TraesCS6A01G239400 chr6A_449638410 chr6A 449638410 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 449638491 449640416 1926 3 0.155763239875389 RFvsST 103455 617686259 617582805 no 97.5466672429459 TraesCS6A01G239400 chr6A_449639555 chr6A 449639555 A A T T 4 intron_variant MODIFIER transcript unique_Triplet 449638491 449640416 1926 3 0.155763239875389 RFvsST 103455 617686259 617582805 no 97.5466672429459 TraesCS6A01G239400 chr6A_449639327 chr6A 449639327 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 449638491 449640416 1926 3 0.155763239875389 RFvsST 103455 617686259 617582805 no 97.5466672429459 TraesCS6A01G240800 chr6A_452097334 chr6A 452097334 T G T G 3 synonymous_variant LOW transcript non_Triplet 452097169 452099442 2274 1 0.0439753737906772 RFvsST 103455 617686259 617582805 no 39.7866795057373 TraesCS6A01G241200 chr6A_452638576 chr6A 452638576 C C T T 4 missense_variant MODERATE transcript unique_Triplet 452637283 452640797 3515 2 0.0568990042674253 RFvsST 103455 617686259 617582805 no 70.1291446742789 TraesCS6A01G241200 chr6A_452638948 chr6A 452638948 A A G G 4 synonymous_variant LOW transcript unique_Triplet 452637283 452640797 3515 2 0.0568990042674253 RFvsST 103455 617686259 617582805 no 70.1291446742789 TraesCS6A01G241400 chr6A_452954678 chr6A 452954678 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 452954703 452957581 2879 1 0.0347342827370615 RFvsST 103455 617686259 617582805 no 1592.52960505667 TraesCS6A01G241700 chr6A_453553310 chr6A 453553310 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 453552714 453553244 531 1 0.188323917137476 RFvsST 103455 617686259 617582805 no 467.097772473579 TraesCS6A01G241800 chr6A_453572225 chr6A 453572225 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 453570562 453572440 1879 1 0.0532197977647685 RFvsST 103455 617686259 617582805 no 98.1457809116836 TraesCS6A01G242300 chr6A_453911461 chr6A 453911461 G T A T,A 6 missense_variant MODERATE transcript unique_Triplet 453908669 453911665 2997 1 0.0333667000333667 RFvsST 103455 617686259 617582805 no 651.869720625453 TraesCS6A01G242600 chr6A_454390221 chr6A 454390221 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 454386319 454390586 4268 1 0.0234301780693533 RFvsST 103455 617686259 617582805 no 232.680654383207 TraesCS6A01G242900 chr6A_454656037 chr6A 454656037 G G A A 4 missense_variant MODERATE transcript unique_Triplet 454649471 454657871 8401 5 0.0595167241995001 RFvsST 103455 617686259 617582805 no 227.573949410549 TraesCS6A01G242900 chr6A_454657772 chr6A 454657772 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 454649471 454657871 8401 5 0.0595167241995001 RFvsST 103455 617686259 617582805 no 227.573949410549 TraesCS6A01G242900 chr6A_454651109 chr6A 454651109 T T C C 4 missense_variant MODERATE transcript unique_Triplet 454649471 454657871 8401 5 0.0595167241995001 RFvsST 103455 617686259 617582805 no 227.573949410549 TraesCS6A01G242900 chr6A_454654660 chr6A 454654660 A A G G 4 missense_variant MODERATE transcript unique_Triplet 454649471 454657871 8401 5 0.0595167241995001 RFvsST 103455 617686259 617582805 no 227.573949410549 TraesCS6A01G242900 chr6A_454655948 chr6A 454655948 T T G G 4 synonymous_variant LOW transcript unique_Triplet 454649471 454657871 8401 5 0.0595167241995001 RFvsST 103455 617686259 617582805 no 227.573949410549 TraesCS6A01G243000 chr6A_454679425 chr6A 454679425 T T G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 454675310 454679530 4221 1 0.0236910684671879 RFvsST 103455 617686259 617582805 no 76.0745665046185 TraesCS6A01G243700 chr6A_455046690 chr6A 455046690 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 455043197 455045717 2521 1 0.0396667988893296 RFvsST 103455 617686259 617582805 no 12.1662856635136 TraesCS6A01G244400 chr6A_455708087 chr6A 455708087 A A C C 4 missense_variant MODERATE transcript unique_Triplet 455705104 455708415 3312 1 0.0301932367149758 RFvsST 103455 617686259 617582805 no 243.827480537455 TraesCS6A01G244600 chr6A_455937642 chr6A 455937642 C C G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 455936707 455939995 3289 2 0.0608087564609304 RFvsST 103455 617686259 617582805 no 63.9175138169752 TraesCS6A01G244600 chr6A_455939510 chr6A 455939510 G G A A 4 synonymous_variant LOW transcript unique_Triplet 455936707 455939995 3289 2 0.0608087564609304 RFvsST 103455 617686259 617582805 no 63.9175138169752 TraesCS6A01G244700 chr6A_455940548 chr6A 455940548 C C G G 4 missense_variant MODERATE transcript unique_Triplet 455940511 455942133 1623 2 0.123228589032656 RFvsST 103455 617686259 617582805 no 131.519298006484 TraesCS6A01G244700 chr6A_455941320 chr6A 455941320 C C A A 4 missense_variant MODERATE transcript unique_Triplet 455940511 455942133 1623 2 0.123228589032656 RFvsST 103455 617686259 617582805 no 131.519298006484 TraesCS6A01G245000 chr6A_456609998 chr6A 456609998 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 456597127 456609273 12147 2 0.0164649707746769 RFvsST 103455 617686259 617582805 no 103.983498045559 TraesCS6A01G245000 chr6A_456597855 chr6A 456597855 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 456597127 456609273 12147 2 0.0164649707746769 RFvsST 103455 617686259 617582805 no 103.983498045559 TraesCS6A01G246300 chr6A_457397102 chr6A 457397102 T T C C 4 missense_variant MODERATE transcript unique_Triplet 457376497 457401735 25239 1 0.00396212211260351 RFvsST 103455 617686259 617582805 no 112.235535953468 TraesCS6A01G247200 chr6A_459077123 chr6A 459077123 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 459074902 459077080 2179 1 0.0458926112895824 RFvsST 103455 617686259 617582805 no 590.366545796946 TraesCS6A01G251200 chr6A_465609449 chr6A 465609449 A A G G 4 missense_variant MODERATE transcript unique_Triplet 465605683 465617075 11393 1 0.00877731940665321 RFvsST 103455 617686259 617582805 no 59.4319109573882 TraesCS6A01G268000 chr6A_494443330 chr6A 494443330 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 494440285 494443153 2869 1 0.0348553502962705 RFvsST 103455 617686259 617582805 no 31.019574734426 TraesCS6A01G270100 chr6A_496473672 chr6A 496473672 C C T T 4 synonymous_variant LOW transcript unique_Triplet 496471652 496474649 2998 1 0.0333555703802535 RFvsST 103455 617686259 617582805 no 206.065517691507 TraesCS6A01G271200 chr6A_497791318 chr6A 497791318 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 497790048 497793189 3142 2 0.063653723742839 RFvsST 103455 617686259 617582805 no 411.577868207181 TraesCS6A01G271200 chr6A_497789707 chr6A 497789707 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 497790048 497793189 3142 2 0.063653723742839 RFvsST 103455 617686259 617582805 no 411.577868207181 TraesCS6A01G271300 chr6A_498007683 chr6A 498007683 C C T T 4 synonymous_variant LOW transcript unique_Triplet 498006924 498008872 1949 3 0.153925089789636 RFvsST 103455 617686259 617582805 no 473.128760432935 TraesCS6A01G271300 chr6A_498006938 chr6A 498006938 T T C C 4 synonymous_variant LOW transcript unique_Triplet 498006924 498008872 1949 3 0.153925089789636 RFvsST 103455 617686259 617582805 no 473.128760432935 TraesCS6A01G271300 chr6A_498007895 chr6A 498007895 C C T T 4 synonymous_variant LOW transcript unique_Triplet 498006924 498008872 1949 3 0.153925089789636 RFvsST 103455 617686259 617582805 no 473.128760432935 TraesCS6A01G271500 chr6A_498528677 chr6A 498528677 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 498525597 498528217 2621 1 0.0381533765738268 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G271700 chr6A_498587621 chr6A 498587621 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 498587967 498593577 5611 1 0.017822135091784 RFvsST 103455 617686259 617582805 no 1934.28343326879 TraesCS6A01G271900 chr6A_498949270 chr6A 498949270 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 498946762 498949106 2345 3 0.127931769722815 RFvsST 103455 617686259 617582805 no 140.151281826203 TraesCS6A01G271900 chr6A_498947130 chr6A 498947130 C C T T 4 missense_variant MODERATE transcript non_Triplet 498946762 498949106 2345 3 0.127931769722815 RFvsST 103455 617686259 617582805 no 140.151281826203 TraesCS6A01G271900 chr6A_498949271 chr6A 498949271 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 498946762 498949106 2345 3 0.127931769722815 RFvsST 103455 617686259 617582805 no 140.151281826203 TraesCS6A01G272000 chr6A_498954213 chr6A 498954213 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 498950820 498955005 4186 4 0.0955566172957477 RFvsST 103455 617686259 617582805 no 563.855826404975 TraesCS6A01G272000 chr6A_498951288 chr6A 498951288 T T C C 4 synonymous_variant LOW transcript unique_Triplet 498950820 498955005 4186 4 0.0955566172957477 RFvsST 103455 617686259 617582805 no 563.855826404975 TraesCS6A01G272000 chr6A_498951853 chr6A 498951853 A A C C 4 missense_variant MODERATE transcript unique_Triplet 498950820 498955005 4186 4 0.0955566172957477 RFvsST 103455 617686259 617582805 no 563.855826404975 TraesCS6A01G272000 chr6A_498953690 chr6A 498953690 G G A A 4 synonymous_variant LOW transcript unique_Triplet 498950820 498955005 4186 4 0.0955566172957477 RFvsST 103455 617686259 617582805 no 563.855826404975 TraesCS6A01G272200 chr6A_499004678 chr6A 499004678 C C A A 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 499003622 499006481 2860 1 0.034965034965035 RFvsST 103455 617686259 617582805 no 533.370923660008 TraesCS6A01G272500 chr6A_499200431 chr6A 499200431 C C G G 4 missense_variant MODERATE transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499200171 chr6A 499200171 A A G G 4 synonymous_variant LOW transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499199646 chr6A 499199646 C C T T 4 synonymous_variant LOW transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499200358 chr6A 499200358 G G C C 4 missense_variant MODERATE transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499200556 chr6A 499200556 C C G G 4 missense_variant MODERATE transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499200557 chr6A 499200557 A A G G 4 missense_variant MODERATE transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499200369 chr6A 499200369 C C T T 4 synonymous_variant LOW transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272500 chr6A_499199357 chr6A 499199357 G G A A 4 missense_variant MODERATE transcript non_Triplet 499199306 499201977 2672 8 0.29940119760479 RFvsST 103455 617686259 617582805 no 128.941735621234 TraesCS6A01G272600 chr6A_499209140 chr6A 499209140 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 499206773 499209276 2504 1 0.0399361022364217 RFvsST 103455 617686259 617582805 no 19.9452541214924 TraesCS6A01G272700 chr6A_499286962 chr6A 499286962 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 499285237 499286892 1656 2 0.120772946859903 RFvsST 103455 617686259 617582805 no 2514.78627713288 TraesCS6A01G272700 chr6A_499285024 chr6A 499285024 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 499285237 499286892 1656 2 0.120772946859903 RFvsST 103455 617686259 617582805 no 2514.78627713288 TraesCS6A01G272800 chr6A_499400488 chr6A 499400488 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 499397477 499400700 3224 2 0.0620347394540943 RFvsST 103455 617686259 617582805 no 128.949362385 TraesCS6A01G272800 chr6A_499400346 chr6A 499400346 C C T T 4 synonymous_variant LOW transcript unique_Triplet 499397477 499400700 3224 2 0.0620347394540943 RFvsST 103455 617686259 617582805 no 128.949362385 TraesCS6A01G274300 chr6A_501176523 chr6A 501176523 G G A A 4 missense_variant MODERATE transcript unique_Triplet 501172023 501176603 4581 4 0.0873171796550971 RFvsST 103455 617686259 617582805 no 137.412257744768 TraesCS6A01G274300 chr6A_501175560 chr6A 501175560 C C A A 4 missense_variant MODERATE transcript unique_Triplet 501172023 501176603 4581 4 0.0873171796550971 RFvsST 103455 617686259 617582805 no 137.412257744768 TraesCS6A01G274300 chr6A_501169929 chr6A 501169929 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501172023 501176603 4581 4 0.0873171796550971 RFvsST 103455 617686259 617582805 no 137.412257744768 TraesCS6A01G274300 chr6A_501173575 chr6A 501173575 C C T T 4 missense_variant MODERATE transcript unique_Triplet 501172023 501176603 4581 4 0.0873171796550971 RFvsST 103455 617686259 617582805 no 137.412257744768 TraesCS6A01G274400 chr6A_501176793 chr6A 501176793 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501181099 501183684 2586 4 0.154679040989946 RFvsST 103455 617686259 617582805 no 39.7197901456313 TraesCS6A01G274400 chr6A_501183724 chr6A 501183724 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501181099 501183684 2586 4 0.154679040989946 RFvsST 103455 617686259 617582805 no 39.7197901456313 TraesCS6A01G274400 chr6A_501176875 chr6A 501176875 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501181099 501183684 2586 4 0.154679040989946 RFvsST 103455 617686259 617582805 no 39.7197901456313 TraesCS6A01G274400 chr6A_501181382 chr6A 501181382 C C A A 4 synonymous_variant LOW transcript unique_Triplet 501181099 501183684 2586 4 0.154679040989946 RFvsST 103455 617686259 617582805 no 39.7197901456313 TraesCS6A01G274500 chr6A_501229698 chr6A 501229698 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501222140 501225131 2992 4 0.133689839572192 RFvsST 103455 617686259 617582805 no 262.376833102306 TraesCS6A01G274500 chr6A_501222263 chr6A 501222263 T T C C 4 synonymous_variant LOW transcript unique_Triplet 501222140 501225131 2992 4 0.133689839572192 RFvsST 103455 617686259 617582805 no 262.376833102306 TraesCS6A01G274500 chr6A_501229823 chr6A 501229823 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501222140 501225131 2992 4 0.133689839572192 RFvsST 103455 617686259 617582805 no 262.376833102306 TraesCS6A01G274500 chr6A_501229848 chr6A 501229848 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 501222140 501225131 2992 4 0.133689839572192 RFvsST 103455 617686259 617582805 no 262.376833102306 TraesCS6A01G274600 chr6A_501480089 chr6A 501480089 C C T T 4 synonymous_variant LOW transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G274600 chr6A_501489514 chr6A 501489514 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G274600 chr6A_501489397 chr6A 501489397 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G274600 chr6A_501479872 chr6A 501479872 C C T T 4 synonymous_variant LOW transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G274600 chr6A_501489208 chr6A 501489208 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G274600 chr6A_501486637 chr6A 501486637 G G C C 4 missense_variant MODERATE transcript unique_Triplet 501479762 501489207 9446 6 0.0635189498200296 RFvsST 103455 617686259 617582805 no 256.772008441645 TraesCS6A01G275500 chr6A_502134961 chr6A 502134961 T T C C 4 synonymous_variant LOW transcript unique_Triplet 502131992 502146171 14180 3 0.0211565585331453 RFvsST 103455 617686259 617582805 no 329.936660873528 TraesCS6A01G275500 chr6A_502143523 chr6A 502143523 T T C C 4 synonymous_variant LOW transcript unique_Triplet 502131992 502146171 14180 3 0.0211565585331453 RFvsST 103455 617686259 617582805 no 329.936660873528 TraesCS6A01G275500 chr6A_502134793 chr6A 502134793 C C A A 4 synonymous_variant LOW transcript unique_Triplet 502131992 502146171 14180 3 0.0211565585331453 RFvsST 103455 617686259 617582805 no 329.936660873528 TraesCS6A01G276600 chr6A_503721160 chr6A 503721160 T T C C 4 missense_variant MODERATE transcript unique_Triplet 503720122 503729808 9687 1 0.0103231134510168 RFvsST 103455 617686259 617582805 no 503.758052023495 TraesCS6A01G277400 chr6A_504480030 chr6A 504480030 C C T T 4 missense_variant MODERATE transcript unique_Triplet 504474335 504488558 14224 1 0.00703037120359955 RFvsST 103455 617686259 617582805 no 403.781226500137 TraesCS6A01G280800 chr6A_510254640 chr6A 510254640 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 510249925 510263347 13423 1 0.00744989942635774 RFvsST 103455 617686259 617582805 no 503.12570375412 TraesCS6A01G282500 chr6A_512830264 chr6A 512830264 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 512830414 512834688 4275 1 0.0233918128654971 RFvsST 103455 617686259 617582805 no 185.575369964296 TraesCS6A01G285600 chr6A_517533020 chr6A 517533020 G G A A 4 synonymous_variant LOW transcript non_Triplet 517532018 517534036 2019 1 0.0495294700346706 RFvsST 103455 617686259 617582805 no 143.08893720188 TraesCS6A01G286100 chr6A_517890960 chr6A 517890960 C T C T 3 missense_variant MODERATE transcript unique_Triplet 517889090 517896871 7782 2 0.0257003341043434 RFvsST 103455 617686259 617582805 no 176.936732031327 TraesCS6A01G286100 chr6A_517892321 chr6A 517892321 T A T A 3 missense_variant MODERATE transcript unique_Triplet 517889090 517896871 7782 2 0.0257003341043434 RFvsST 103455 617686259 617582805 no 176.936732031327 TraesCS6A01G288300 chr6A_520649706 chr6A 520649706 T T C C 4 missense_variant MODERATE transcript non_Triplet 520649282 520650434 1153 1 0.0867302688638335 RFvsST 103455 617686259 617582805 no 243.973862017089 TraesCS6A01G288800 chr6A_520846453 chr6A 520846453 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 520845911 520847049 1139 1 0.0877963125548727 RFvsST 103455 617686259 617582805 no 136.447590304641 TraesCS6A01G289000 chr6A_520875166 chr6A 520875166 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 520870912 520872444 1533 1 0.0652315720808871 RFvsST 103455 617686259 617582805 no 791.821364464926 TraesCS6A01G289300 chr6A_521447839 chr6A 521447839 T T C C 4 synonymous_variant LOW transcript unique_Triplet 521447834 521450617 2784 1 0.0359195402298851 RFvsST 103455 617686259 617582805 no 33.4933590304276 TraesCS6A01G289700 chr6A_521483055 chr6A 521483055 A A T T 4 missense_variant MODERATE transcript unique_Triplet 521480819 521484117 3299 1 0.0303122158229767 RFvsST 103455 617686259 617582805 no 20.8525469238233 TraesCS6A01G291100 chr6A_522607929 chr6A 522607929 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 522607939 522610499 2561 5 0.195236235845373 RFvsST 103455 617686259 617582805 no 197.298085062274 TraesCS6A01G291100 chr6A_522610175 chr6A 522610175 T T A A 4 synonymous_variant LOW transcript non_Triplet 522607939 522610499 2561 5 0.195236235845373 RFvsST 103455 617686259 617582805 no 197.298085062274 TraesCS6A01G291100 chr6A_522610268 chr6A 522610268 G G T T 4 synonymous_variant LOW transcript non_Triplet 522607939 522610499 2561 5 0.195236235845373 RFvsST 103455 617686259 617582805 no 197.298085062274 TraesCS6A01G291100 chr6A_522610269 chr6A 522610269 C C T T 4 missense_variant MODERATE transcript non_Triplet 522607939 522610499 2561 5 0.195236235845373 RFvsST 103455 617686259 617582805 no 197.298085062274 TraesCS6A01G291100 chr6A_522610130 chr6A 522610130 C C T T 4 synonymous_variant LOW transcript non_Triplet 522607939 522610499 2561 5 0.195236235845373 RFvsST 103455 617686259 617582805 no 197.298085062274 TraesCS6A01G291200 chr6A_522610570 chr6A 522610570 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 522614980 522618638 3659 4 0.109319486198415 RFvsST 103455 617686259 617582805 no 351.740150764797 TraesCS6A01G291200 chr6A_522618661 chr6A 522618661 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 522614980 522618638 3659 4 0.109319486198415 RFvsST 103455 617686259 617582805 no 351.740150764797 TraesCS6A01G291200 chr6A_522618702 chr6A 522618702 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 522614980 522618638 3659 4 0.109319486198415 RFvsST 103455 617686259 617582805 no 351.740150764797 TraesCS6A01G291200 chr6A_522615028 chr6A 522615028 G G T T 4 missense_variant MODERATE transcript nonUnique_Triplet 522614980 522618638 3659 4 0.109319486198415 RFvsST 103455 617686259 617582805 no 351.740150764797 TraesCS6A01G291500 chr6A_523066734 chr6A 523066734 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 523063744 523067058 3315 2 0.0603318250377074 RFvsST 103455 617686259 617582805 no 84.0904155791517 TraesCS6A01G291500 chr6A_523066830 chr6A 523066830 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 523063744 523067058 3315 2 0.0603318250377074 RFvsST 103455 617686259 617582805 no 84.0904155791517 TraesCS6A01G291900 chr6A_523949947 chr6A 523949947 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 523944909 523949831 4923 1 0.0203128173877717 RFvsST 103455 617686259 617582805 no 218.554997347122 TraesCS6A01G292000 chr6A_524068012 chr6A 524068012 A A G G 4 synonymous_variant LOW transcript unique_Triplet 524067020 524070239 3220 1 0.031055900621118 RFvsST 103455 617686259 617582805 no 30.9743405204287 TraesCS6A01G292400 chr6A_524319663 chr6A 524319663 A A G G 4 missense_variant MODERATE transcript non_Triplet 524319512 524319892 381 1 0.26246719160105 RFvsST 103455 617686259 617582805 no 32.7374461208802 TraesCS6A01G292700 chr6A_524364847 chr6A 524364847 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 524361840 524362980 1141 1 0.0876424189307625 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G293200 chr6A_524719623 chr6A 524719623 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 524718513 524719864 1352 3 0.22189349112426 RFvsST 103455 617686259 617582805 no 233.577001712081 TraesCS6A01G293200 chr6A_524718660 chr6A 524718660 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 524718513 524719864 1352 3 0.22189349112426 RFvsST 103455 617686259 617582805 no 233.577001712081 TraesCS6A01G293200 chr6A_524718203 chr6A 524718203 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 524718513 524719864 1352 3 0.22189349112426 RFvsST 103455 617686259 617582805 no 233.577001712081 TraesCS6A01G293800 chr6A_525759372 chr6A 525759372 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 525755934 525757974 2041 1 0.0489955903968643 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G294100 chr6A_525996533 chr6A 525996533 G G A A 4 missense_variant MODERATE transcript unique_Triplet 525993954 526026891 32938 1 0.00303600704353634 RFvsST 103455 617686259 617582805 no 209.835953868438 TraesCS6A01G296000 chr6A_529567762 chr6A 529567762 T C T C 3 synonymous_variant LOW transcript unique_Triplet 529564763 529568038 3276 2 0.061050061050061 RFvsST 103455 617686259 617582805 no 160.723019885408 TraesCS6A01G296000 chr6A_529567476 chr6A 529567476 G A G A 3 synonymous_variant LOW transcript unique_Triplet 529564763 529568038 3276 2 0.061050061050061 RFvsST 103455 617686259 617582805 no 160.723019885408 TraesCS6A01G296400 chr6A_530046844 chr6A 530046844 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 530045818 530046415 598 1 0.167224080267559 RFvsST 103455 617686259 617582805 no 442.353690171618 TraesCS6A01G296700 chr6A_530138249 chr6A 530138249 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 530136402 530138095 1694 3 0.177095631641086 RFvsST 103455 617686259 617582805 no 138.639576627053 TraesCS6A01G296700 chr6A_530136357 chr6A 530136357 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 530136402 530138095 1694 3 0.177095631641086 RFvsST 103455 617686259 617582805 no 138.639576627053 TraesCS6A01G296700 chr6A_530138224 chr6A 530138224 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 530136402 530138095 1694 3 0.177095631641086 RFvsST 103455 617686259 617582805 no 138.639576627053 TraesCS6A01G296800 chr6A_530216216 chr6A 530216216 T C T C 3 missense_variant MODERATE transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G296800 chr6A_530217534 chr6A 530217534 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G296800 chr6A_530218937 chr6A 530218937 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G296800 chr6A_530216443 chr6A 530216443 A G A G 3 missense_variant MODERATE transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G296800 chr6A_530218941 chr6A 530218941 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G296800 chr6A_530221340 chr6A 530221340 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 530215901 530221599 5699 6 0.105281628355852 RFvsST 103455 617686259 617582805 no 282.96599514109 TraesCS6A01G297900 chr6A_531383940 chr6A 531383940 C G C G 3 missense_variant MODERATE transcript unique_Triplet 531383208 531388486 5279 3 0.0568289448759235 RFvsST 103455 617686259 617582805 no 114.234575743152 TraesCS6A01G297900 chr6A_531388441 chr6A 531388441 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 531383208 531388486 5279 3 0.0568289448759235 RFvsST 103455 617686259 617582805 no 114.234575743152 TraesCS6A01G297900 chr6A_531388555 chr6A 531388555 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 531383208 531388486 5279 3 0.0568289448759235 RFvsST 103455 617686259 617582805 no 114.234575743152 TraesCS6A01G298000 chr6A_531394508 chr6A 531394508 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 531391268 531391489 222 1 0.45045045045045 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G298200 chr6A_531519098 chr6A 531519098 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298200 chr6A_531518798 chr6A 531518798 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298200 chr6A_531523365 chr6A 531523365 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298200 chr6A_531517214 chr6A 531517214 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298200 chr6A_531517314 chr6A 531517314 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298200 chr6A_531518513 chr6A 531518513 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 531520488 531522392 1905 6 0.31496062992126 RFvsST 103455 617686259 617582805 no 39.8547665200297 TraesCS6A01G298300 chr6A_531524128 chr6A 531524128 G C G C 3 synonymous_variant LOW transcript unique_Triplet 531523542 531526071 2530 2 0.0790513833992095 RFvsST 103455 617686259 617582805 no 40.4631308010004 TraesCS6A01G298300 chr6A_531524370 chr6A 531524370 A C A C 3 missense_variant MODERATE transcript unique_Triplet 531523542 531526071 2530 2 0.0790513833992095 RFvsST 103455 617686259 617582805 no 40.4631308010004 TraesCS6A01G299300 chr6A_532643087 chr6A 532643087 C T C T 3 missense_variant MODERATE transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G299300 chr6A_532643628 chr6A 532643628 G A G A 3 synonymous_variant LOW transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G299300 chr6A_532641311 chr6A 532641311 C T C T 3 missense_variant MODERATE transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G299300 chr6A_532644531 chr6A 532644531 T C T C 3 synonymous_variant LOW transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G299300 chr6A_532643621 chr6A 532643621 G A G A 3 missense_variant MODERATE transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G299300 chr6A_532643883 chr6A 532643883 C T C T 3 synonymous_variant LOW transcript unique_Triplet 532640326 532646147 5822 6 0.103057368601855 RFvsST 103455 617686259 617582805 no 214.289423722762 TraesCS6A01G300200 chr6A_533258521 chr6A 533258521 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 533256631 533261483 4853 2 0.041211621677313 RFvsST 103455 617686259 617582805 no 118.027236198434 TraesCS6A01G300200 chr6A_533259295 chr6A 533259295 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 533256631 533261483 4853 2 0.041211621677313 RFvsST 103455 617686259 617582805 no 118.027236198434 TraesCS6A01G300500 chr6A_533402269 chr6A 533402269 G A G A 3 synonymous_variant LOW transcript unique_Triplet 533401611 533404107 2497 1 0.040048057669203 RFvsST 103455 617686259 617582805 no 43.5176824427568 TraesCS6A01G301600 chr6A_534962021 chr6A 534962021 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 534962089 534964485 2397 2 0.0834376303712974 RFvsST 103455 617686259 617582805 no 49.3868973099139 TraesCS6A01G301600 chr6A_534962059 chr6A 534962059 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 534962089 534964485 2397 2 0.0834376303712974 RFvsST 103455 617686259 617582805 no 49.3868973099139 TraesCS6A01G301900 chr6A_535402702 chr6A 535402702 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 535402899 535403885 987 1 0.101317122593718 RFvsST 103455 617686259 617582805 no 1800.79822548662 TraesCS6A01G302400 chr6A_535983443 chr6A 535983443 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 535983003 535985613 2611 1 0.0382995021064726 RFvsST 103455 617686259 617582805 no 22.9139622795536 TraesCS6A01G310200 chr6A_546547963 chr6A 546547963 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 546547905 546551664 3760 2 0.0531914893617021 RFvsST 103455 617686259 617582805 no 44.5378807496363 TraesCS6A01G310200 chr6A_546550885 chr6A 546550885 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 546547905 546551664 3760 2 0.0531914893617021 RFvsST 103455 617686259 617582805 no 44.5378807496363 TraesCS6A01G310300 chr6A_546597072 chr6A 546597072 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 546596236 546597369 1134 1 0.0881834215167548 RFvsST 103455 617686259 617582805 no 124.247767900817 TraesCS6A01G311800 chr6A_547829944 chr6A 547829944 A T A T 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 547826517 547830294 3778 1 0.0264690312334569 RFvsST 103455 617686259 617582805 no 469.198948344976 TraesCS6A01G311900 chr6A_548111683 chr6A 548111683 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 548110681 548111808 1128 2 0.177304964539007 RFvsST 103455 617686259 617582805 no 199.01654246967 TraesCS6A01G311900 chr6A_548112022 chr6A 548112022 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 548110681 548111808 1128 2 0.177304964539007 RFvsST 103455 617686259 617582805 no 199.01654246967 TraesCS6A01G312000 chr6A_548404545 chr6A 548404545 G G A A 4 missense_variant MODERATE transcript unique_Triplet 548401263 548405074 3812 1 0.0262329485834208 RFvsST 103455 617686259 617582805 no 150.32926207136 TraesCS6A01G313800 chr6A_550642584 chr6A 550642584 G A G A 3 intron_variant MODIFIER transcript nonUnique_Triplet 550637582 550643621 6040 2 0.033112582781457 RFvsST 103455 617686259 617582805 no 126.753328293627 TraesCS6A01G313800 chr6A_550637271 chr6A 550637271 G C G C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 550637582 550643621 6040 2 0.033112582781457 RFvsST 103455 617686259 617582805 no 126.753328293627 TraesCS6A01G314000 chr6A_550730202 chr6A 550730202 T T C C 4 missense_variant MODERATE transcript unique_Triplet 550730106 550732129 2024 4 0.197628458498024 RFvsST 103455 617686259 617582805 no 39.4053925520579 TraesCS6A01G314000 chr6A_550730078 chr6A 550730078 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 550730106 550732129 2024 4 0.197628458498024 RFvsST 103455 617686259 617582805 no 39.4053925520579 TraesCS6A01G314000 chr6A_550731032 chr6A 550731032 C C A A 4 missense_variant MODERATE transcript unique_Triplet 550730106 550732129 2024 4 0.197628458498024 RFvsST 103455 617686259 617582805 no 39.4053925520579 TraesCS6A01G314000 chr6A_550730079 chr6A 550730079 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 550730106 550732129 2024 4 0.197628458498024 RFvsST 103455 617686259 617582805 no 39.4053925520579 TraesCS6A01G314100 chr6A_550732426 chr6A 550732426 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 550732645 550738288 5644 1 0.0177179305457123 RFvsST 103455 617686259 617582805 no 162.546438464302 TraesCS6A01G314200 chr6A_550742820 chr6A 550742820 A G A G 3 missense_variant MODERATE transcript unique_Triplet 550739519 550744595 5077 2 0.0393933425251133 RFvsST 103455 617686259 617582805 no 44.4985785212566 TraesCS6A01G314200 chr6A_550740427 chr6A 550740427 A G A G 3 missense_variant MODERATE transcript unique_Triplet 550739519 550744595 5077 2 0.0393933425251133 RFvsST 103455 617686259 617582805 no 44.4985785212566 TraesCS6A01G314400 chr6A_550955440 chr6A 550955440 A G A G 3 synonymous_variant LOW transcript unique_Triplet 550954873 550964534 9662 3 0.0310494721589733 RFvsST 103455 617686259 617582805 no 55.835242833372 TraesCS6A01G314400 chr6A_550955434 chr6A 550955434 G G A A 4 synonymous_variant LOW transcript unique_Triplet 550954873 550964534 9662 3 0.0310494721589733 RFvsST 103455 617686259 617582805 no 55.835242833372 TraesCS6A01G314400 chr6A_550958819 chr6A 550958819 G A G A 3 synonymous_variant LOW transcript unique_Triplet 550954873 550964534 9662 3 0.0310494721589733 RFvsST 103455 617686259 617582805 no 55.835242833372 TraesCS6A01G318200 chr6A_554459117 chr6A 554459117 G G A A 4 synonymous_variant LOW transcript unique_Triplet 554457325 554459381 2057 1 0.0486144871171609 RFvsST 103455 617686259 617582805 no 6.17828797530634 TraesCS6A01G318400 chr6A_554518673 chr6A 554518673 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 554508676 554514270 5595 1 0.0178731009830206 RFvsST 103455 617686259 617582805 no 43.5273478725738 TraesCS6A01G318500 chr6A_554518453 chr6A 554518453 C T C T 3 missense_variant MODERATE transcript unique_Triplet 554516175 554518469 2295 1 0.0435729847494553 RFvsST 103455 617686259 617582805 no 267.969175807741 TraesCS6A01G318600 chr6A_554521138 chr6A 554521138 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 554520529 554522290 1762 4 0.227014755959137 RFvsST 103455 617686259 617582805 no 520.798721230002 TraesCS6A01G318600 chr6A_554521507 chr6A 554521507 G A G A 3 missense_variant MODERATE transcript non_Triplet 554520529 554522290 1762 4 0.227014755959137 RFvsST 103455 617686259 617582805 no 520.798721230002 TraesCS6A01G318600 chr6A_554522204 chr6A 554522204 A G A G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 554520529 554522290 1762 4 0.227014755959137 RFvsST 103455 617686259 617582805 no 520.798721230002 TraesCS6A01G318600 chr6A_554522235 chr6A 554522235 T C T C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 554520529 554522290 1762 4 0.227014755959137 RFvsST 103455 617686259 617582805 no 520.798721230002 TraesCS6A01G318700 chr6A_554691727 chr6A 554691727 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 554691919 554693184 1266 1 0.0789889415481833 RFvsST 103455 617686259 617582805 no 249.269746000105 TraesCS6A01G319200 chr6A_554818851 chr6A 554818851 A G A G 3 missense_variant MODERATE transcript unique_Triplet 554818189 554822689 4501 5 0.111086425238836 RFvsST 103455 617686259 617582805 no 245.909375750177 TraesCS6A01G319200 chr6A_554821345 chr6A 554821345 T C T C 3 synonymous_variant LOW transcript unique_Triplet 554818189 554822689 4501 5 0.111086425238836 RFvsST 103455 617686259 617582805 no 245.909375750177 TraesCS6A01G319200 chr6A_554822629 chr6A 554822629 C T C T 3 synonymous_variant LOW transcript unique_Triplet 554818189 554822689 4501 5 0.111086425238836 RFvsST 103455 617686259 617582805 no 245.909375750177 TraesCS6A01G319200 chr6A_554821968 chr6A 554821968 C T C T 3 synonymous_variant LOW transcript unique_Triplet 554818189 554822689 4501 5 0.111086425238836 RFvsST 103455 617686259 617582805 no 245.909375750177 TraesCS6A01G319200 chr6A_554821295 chr6A 554821295 G A G A 3 missense_variant MODERATE transcript unique_Triplet 554818189 554822689 4501 5 0.111086425238836 RFvsST 103455 617686259 617582805 no 245.909375750177 TraesCS6A01G319700 chr6A_555109116 chr6A 555109116 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 555109172 555110828 1657 1 0.0603500301750151 RFvsST 103455 617686259 617582805 no 1051.30606930861 TraesCS6A01G320000 chr6A_555235321 chr6A 555235321 G A G A 3 synonymous_variant LOW transcript unique_Triplet 555231118 555248290 17173 5 0.0291154719618005 RFvsST 103455 617686259 617582805 no 64.018192721323 TraesCS6A01G320000 chr6A_555247310 chr6A 555247310 G A G A 3 synonymous_variant LOW transcript unique_Triplet 555231118 555248290 17173 5 0.0291154719618005 RFvsST 103455 617686259 617582805 no 64.018192721323 TraesCS6A01G320000 chr6A_555232810 chr6A 555232810 C T C T 3 synonymous_variant LOW transcript unique_Triplet 555231118 555248290 17173 5 0.0291154719618005 RFvsST 103455 617686259 617582805 no 64.018192721323 TraesCS6A01G320000 chr6A_555246285 chr6A 555246285 G A G A 3 synonymous_variant LOW transcript unique_Triplet 555231118 555248290 17173 5 0.0291154719618005 RFvsST 103455 617686259 617582805 no 64.018192721323 TraesCS6A01G320000 chr6A_555244691 chr6A 555244691 T C T C 3 synonymous_variant LOW transcript unique_Triplet 555231118 555248290 17173 5 0.0291154719618005 RFvsST 103455 617686259 617582805 no 64.018192721323 TraesCS6A01G320100 chr6A_555308418 chr6A 555308418 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 555308545 555319289 10745 4 0.0372266170311773 RFvsST 103455 617686259 617582805 no 412.396974744647 TraesCS6A01G320100 chr6A_555308538 chr6A 555308538 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 555308545 555319289 10745 4 0.0372266170311773 RFvsST 103455 617686259 617582805 no 412.396974744647 TraesCS6A01G320100 chr6A_555318875 chr6A 555318875 T C T C 3 synonymous_variant LOW transcript non_Triplet 555308545 555319289 10745 4 0.0372266170311773 RFvsST 103455 617686259 617582805 no 412.396974744647 TraesCS6A01G320100 chr6A_555318099 chr6A 555318099 T C T C 3 synonymous_variant LOW transcript non_Triplet 555308545 555319289 10745 4 0.0372266170311773 RFvsST 103455 617686259 617582805 no 412.396974744647 TraesCS6A01G320500 chr6A_555414965 chr6A 555414965 G A G A 3 synonymous_variant LOW transcript non_Triplet 555414692 555417681 2990 2 0.0668896321070234 RFvsST 103455 617686259 617582805 no 94.3592336611439 TraesCS6A01G320500 chr6A_555415447 chr6A 555415447 T C T C 3 missense_variant MODERATE transcript non_Triplet 555414692 555417681 2990 2 0.0668896321070234 RFvsST 103455 617686259 617582805 no 94.3592336611439 TraesCS6A01G321400 chr6A_555752465 chr6A 555752465 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 555751695 555753628 1934 3 0.15511892450879 RFvsST 103455 617686259 617582805 no 45.8516357806027 TraesCS6A01G321400 chr6A_555752205 chr6A 555752205 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 555751695 555753628 1934 3 0.15511892450879 RFvsST 103455 617686259 617582805 no 45.8516357806027 TraesCS6A01G321400 chr6A_555752374 chr6A 555752374 G G T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 555751695 555753628 1934 3 0.15511892450879 RFvsST 103455 617686259 617582805 no 45.8516357806027 TraesCS6A01G321600 chr6A_555971207 chr6A 555971207 C C T T 4 missense_variant MODERATE transcript unique_Triplet 555968179 555972933 4755 1 0.0210304942166141 RFvsST 103455 617686259 617582805 no 138.577533183484 TraesCS6A01G324100 chr6A_557929221 chr6A 557929221 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 557929549 557933988 4440 1 0.0225225225225225 RFvsST 103455 617686259 617582805 no 8.00844786484724 TraesCS6A01G326900 chr6A_560206550 chr6A 560206550 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 560206760 560210452 3693 1 0.0270782561603033 RFvsST 103455 617686259 617582805 no 157.444642076798 TraesCS6A01G327500 chr6A_560574475 chr6A 560574475 C C T T 4 synonymous_variant LOW transcript unique_Triplet 560571125 560575077 3953 1 0.0252972426005565 RFvsST 103455 617686259 617582805 no 19.7319068301412 TraesCS6A01G327800 chr6A_560816659 chr6A 560816659 G C G C 3 missense_variant MODERATE transcript non_Triplet 560815071 560817101 2031 1 0.0492368291482029 RFvsST 103455 617686259 617582805 no 441.149506673796 TraesCS6A01G330200 chr6A_562931621 chr6A 562931621 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 562930162 562932205 2044 1 0.0489236790606654 RFvsST 103455 617686259 617582805 no 57.1618240628365 TraesCS6A01G330600 chr6A_563127563 chr6A 563127563 T T C C 4 missense_variant MODERATE transcript unique_Triplet 563126626 563131068 4443 2 0.0450146297546703 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G330600 chr6A_563131011 chr6A 563131011 T T C C 4 synonymous_variant LOW transcript unique_Triplet 563126626 563131068 4443 2 0.0450146297546703 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G331500 chr6A_563559419 chr6A 563559419 C C G G 4 missense_variant MODERATE transcript unique_Triplet 563559000 563561993 2994 2 0.0668002672010688 RFvsST 103455 617686259 617582805 no 134.058198240401 TraesCS6A01G331500 chr6A_563558993 chr6A 563558993 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 563559000 563561993 2994 2 0.0668002672010688 RFvsST 103455 617686259 617582805 no 134.058198240401 TraesCS6A01G331900 chr6A_563729029 chr6A 563729029 G G A A 4 missense_variant MODERATE transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563728329 chr6A 563728329 G G C C 4 synonymous_variant LOW transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563730282 chr6A 563730282 C C G G 4 missense_variant MODERATE transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563727701 chr6A 563727701 C C T T 4 missense_variant MODERATE transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563728797 chr6A 563728797 G G A A 4 synonymous_variant LOW transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563728997 chr6A 563728997 C C A A 4 missense_variant MODERATE transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563727597 chr6A 563727597 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G331900 chr6A_563730251 chr6A 563730251 C C T T 4 missense_variant MODERATE transcript unique_Triplet 563727410 563730332 2923 8 0.273691412931919 RFvsST 103455 617686259 617582805 no 472.401631722861 TraesCS6A01G332000 chr6A_563742729 chr6A 563742729 T T C C 4 intron_variant MODIFIER transcript unique_Triplet 563742040 563744072 2033 1 0.0491883915395967 RFvsST 103455 617686259 617582805 no 208.653708603386 TraesCS6A01G332800 chr6A_564274079 chr6A 564274079 C C G G 4 synonymous_variant LOW transcript unique_Triplet 564269712 564274147 4436 2 0.0450856627592426 RFvsST 103455 617686259 617582805 no 155.781016728621 TraesCS6A01G332800 chr6A_564272642 chr6A 564272642 G G A A 4 synonymous_variant LOW transcript unique_Triplet 564269712 564274147 4436 2 0.0450856627592426 RFvsST 103455 617686259 617582805 no 155.781016728621 TraesCS6A01G333100 chr6A_564281848 chr6A 564281848 C C G G 4 missense_variant MODERATE transcript non_Triplet 564281083 564292094 11012 3 0.0272430076280421 RFvsST 103455 617686259 617582805 no 286.954426378469 TraesCS6A01G333100 chr6A_564291062 chr6A 564291062 T T C C 4 synonymous_variant LOW transcript non_Triplet 564281083 564292094 11012 3 0.0272430076280421 RFvsST 103455 617686259 617582805 no 286.954426378469 TraesCS6A01G333100 chr6A_564291438 chr6A 564291438 C C T T 4 missense_variant MODERATE transcript non_Triplet 564281083 564292094 11012 3 0.0272430076280421 RFvsST 103455 617686259 617582805 no 286.954426378469 TraesCS6A01G333600 chr6A_564716777 chr6A 564716777 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 564716150 564720056 3907 1 0.0255950857435372 RFvsST 103455 617686259 617582805 no 65.8710473045468 TraesCS6A01G334900 chr6A_565471134 chr6A 565471134 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 565468239 565480294 12056 1 0.00829462508294625 RFvsST 103455 617686259 617582805 no 80.0043206207721 TraesCS6A01G337400 chr6A_571640628 chr6A 571640628 G A G A 3 missense_variant MODERATE transcript unique_Triplet 571640402 571640995 594 1 0.168350168350168 RFvsST 103455 617686259 617582805 no 456.527443260222 TraesCS6A01G338600 chr6A_571928306 chr6A 571928306 C T C T 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929131 chr6A 571929131 C T C T 3 missense_variant MODERATE transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929130 chr6A 571929130 A G A G 3 missense_variant MODERATE transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571928270 chr6A 571928270 G A G A 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929465 chr6A 571929465 G A G A 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571928234 chr6A 571928234 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929180 chr6A 571929180 G C G C 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571928809 chr6A 571928809 C G C G 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929045 chr6A 571929045 C G C G 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571928375 chr6A 571928375 A G A G 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G338600 chr6A_571929210 chr6A 571929210 G C G C 3 synonymous_variant LOW transcript unique_Triplet 571928211 571930879 2669 11 0.412139378044211 RFvsST 103455 617686259 617582805 no 238.285917556281 TraesCS6A01G339800 chr6A_573191675 chr6A 573191675 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573191835 573196140 4306 1 0.02322340919647 RFvsST 103455 617686259 617582805 no 176.396034624346 TraesCS6A01G339900 chr6A_573201227 chr6A 573201227 G G C C 4 missense_variant MODERATE transcript unique_Triplet 573196785 573201511 4727 2 0.0423101332769198 RFvsST 103455 617686259 617582805 no 62.2965033705244 TraesCS6A01G339900 chr6A_573198593 chr6A 573198593 A A C C 4 missense_variant MODERATE transcript unique_Triplet 573196785 573201511 4727 2 0.0423101332769198 RFvsST 103455 617686259 617582805 no 62.2965033705244 TraesCS6A01G340300 chr6A_573479778 chr6A 573479778 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 573479706 573481862 2157 1 0.0463606861381548 RFvsST 103455 617686259 617582805 no 14.6711960767606 TraesCS6A01G340400 chr6A_573486071 chr6A 573486071 T T C C 4 missense_variant MODERATE transcript unique_Triplet 573482146 573488931 6786 3 0.0442086648983201 RFvsST 103455 617686259 617582805 no 58.7106085299416 TraesCS6A01G340400 chr6A_573491363 chr6A 573491363 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 573482146 573488931 6786 3 0.0442086648983201 RFvsST 103455 617686259 617582805 no 58.7106085299416 TraesCS6A01G340400 chr6A_573491493 chr6A 573491493 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 573482146 573488931 6786 3 0.0442086648983201 RFvsST 103455 617686259 617582805 no 58.7106085299416 TraesCS6A01G340500 chr6A_573498499 chr6A 573498499 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573491519 573494577 3059 5 0.1634521085322 RFvsST 103455 617686259 617582805 no 20.4437685210043 TraesCS6A01G340500 chr6A_573494581 chr6A 573494581 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573491519 573494577 3059 5 0.1634521085322 RFvsST 103455 617686259 617582805 no 20.4437685210043 TraesCS6A01G340500 chr6A_573494569 chr6A 573494569 G G A A 4 synonymous_variant LOW transcript unique_Triplet 573491519 573494577 3059 5 0.1634521085322 RFvsST 103455 617686259 617582805 no 20.4437685210043 TraesCS6A01G340500 chr6A_573496809 chr6A 573496809 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573491519 573494577 3059 5 0.1634521085322 RFvsST 103455 617686259 617582805 no 20.4437685210043 TraesCS6A01G340500 chr6A_573496935 chr6A 573496935 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 573491519 573494577 3059 5 0.1634521085322 RFvsST 103455 617686259 617582805 no 20.4437685210043 TraesCS6A01G340600 chr6A_573513284 chr6A 573513284 G G T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 573506245 573513438 7194 3 0.0417014178482068 RFvsST 103455 617686259 617582805 no 216.857698674463 TraesCS6A01G340600 chr6A_573507854 chr6A 573507854 C C T T 4 missense_variant MODERATE transcript unique_Triplet 573506245 573513438 7194 3 0.0417014178482068 RFvsST 103455 617686259 617582805 no 216.857698674463 TraesCS6A01G340600 chr6A_573506735 chr6A 573506735 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 573506245 573513438 7194 3 0.0417014178482068 RFvsST 103455 617686259 617582805 no 216.857698674463 TraesCS6A01G341700 chr6A_574479814 chr6A 574479814 C G C G 3 missense_variant MODERATE transcript unique_Triplet 574472578 574479877 7300 1 0.0136986301369863 RFvsST 103455 617686259 617582805 no 60.5365664396187 TraesCS6A01G341900 chr6A_574492511 chr6A 574492511 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 574489656 574493198 3543 1 0.0282246683601468 RFvsST 103455 617686259 617582805 no 160.823800154974 TraesCS6A01G349200 chr6A_581747181 chr6A 581747181 C T C T 3 synonymous_variant LOW transcript non_Triplet 581746743 581750561 3819 1 0.0261848651479445 RFvsST 103455 617686259 617582805 no 189.897368567222 TraesCS6A01G351300 chr6A_583271535 chr6A 583271535 G C G C 3 synonymous_variant LOW transcript unique_Triplet 583269178 583272716 3539 4 0.113026278609777 RFvsST 103455 617686259 617582805 no 1651.4545057251 TraesCS6A01G351300 chr6A_583269514 chr6A 583269514 C G C G 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 583269178 583272716 3539 4 0.113026278609777 RFvsST 103455 617686259 617582805 no 1651.4545057251 TraesCS6A01G351300 chr6A_583271178 chr6A 583271178 G A G A 3 synonymous_variant LOW transcript unique_Triplet 583269178 583272716 3539 4 0.113026278609777 RFvsST 103455 617686259 617582805 no 1651.4545057251 TraesCS6A01G351300 chr6A_583268917 chr6A 583268917 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 583269178 583272716 3539 4 0.113026278609777 RFvsST 103455 617686259 617582805 no 1651.4545057251 TraesCS6A01G352300 chr6A_584944409 chr6A 584944409 C T C T 3 synonymous_variant LOW transcript unique_Triplet 584943628 584946540 2913 1 0.0343288705801579 RFvsST 103455 617686259 617582805 no 199.396740861203 TraesCS6A01G368000 chr6A_594537775 chr6A 594537775 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 594532146 594534486 2341 1 0.0427167876975651 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G368100 chr6A_594537621 chr6A 594537621 C T C T 3 synonymous_variant LOW transcript non_Triplet 594536219 594537635 1417 1 0.0705716302046577 RFvsST 103455 617686259 617582805 no 6.76114805306367 TraesCS6A01G368700 chr6A_594751742 chr6A 594751742 C A C A 3 missense_variant MODERATE transcript unique_Triplet 594748127 594752962 4836 3 0.0620347394540943 RFvsST 103455 617686259 617582805 no 74.4193378498508 TraesCS6A01G368700 chr6A_594752996 chr6A 594752996 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 594748127 594752962 4836 3 0.0620347394540943 RFvsST 103455 617686259 617582805 no 74.4193378498508 TraesCS6A01G368700 chr6A_594753166 chr6A 594753166 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 594748127 594752962 4836 3 0.0620347394540943 RFvsST 103455 617686259 617582805 no 74.4193378498508 TraesCS6A01G368900 chr6A_594820168 chr6A 594820168 G A G A 3 missense_variant MODERATE transcript unique_Triplet 594819261 594821857 2597 4 0.154023873700424 RFvsST 103455 617686259 617582805 no 72.8869754651854 TraesCS6A01G368900 chr6A_594821554 chr6A 594821554 C T C T 3 synonymous_variant LOW transcript unique_Triplet 594819261 594821857 2597 4 0.154023873700424 RFvsST 103455 617686259 617582805 no 72.8869754651854 TraesCS6A01G368900 chr6A_594821769 chr6A 594821769 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 594819261 594821857 2597 4 0.154023873700424 RFvsST 103455 617686259 617582805 no 72.8869754651854 TraesCS6A01G368900 chr6A_594821812 chr6A 594821812 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 594819261 594821857 2597 4 0.154023873700424 RFvsST 103455 617686259 617582805 no 72.8869754651854 TraesCS6A01G369000 chr6A_594831513 chr6A 594831513 G A G A 3 synonymous_variant LOW transcript unique_Triplet 594824161 594834202 10042 1 0.00995817566221868 RFvsST 103455 617686259 617582805 no 30.6576083530075 TraesCS6A01G369800 chr6A_595024768 chr6A 595024768 C C T T 4 missense_variant MODERATE transcript non_Triplet 595023777 595029610 5834 1 0.0171408981830648 RFvsST 103455 617686259 617582805 no 869.286110763854 TraesCS6A01G369900 chr6A_595059001 chr6A 595059001 A G A G 3 synonymous_variant LOW transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059267 chr6A 595059267 T C T C 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059831 chr6A 595059831 T G T G 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059461 chr6A 595059461 C T C T 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059396 chr6A 595059396 T C T C 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059670 chr6A 595059670 A C A C 3 synonymous_variant LOW transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059908 chr6A 595059908 T C T C 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595059749 chr6A 595059749 G A G A 3 missense_variant MODERATE transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G369900 chr6A_595061262 chr6A 595061262 C A C A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 595058817 595061628 2812 9 0.320056899004267 RFvsST 103455 617686259 617582805 no 207.373284647324 TraesCS6A01G370500 chr6A_595477627 chr6A 595477627 C T C T 3 synonymous_variant LOW transcript unique_Triplet 595476730 595480188 3459 2 0.0578201792425557 RFvsST 103455 617686259 617582805 no 46.8291909435742 TraesCS6A01G370500 chr6A_595480966 chr6A 595480966 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 595476730 595480188 3459 2 0.0578201792425557 RFvsST 103455 617686259 617582805 no 46.8291909435742 TraesCS6A01G372600 chr6A_596422368 chr6A 596422368 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 596421256 596422304 1049 4 0.381315538608198 RFvsST 103455 617686259 617582805 no 102.731982557876 TraesCS6A01G372600 chr6A_596421859 chr6A 596421859 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 596421256 596422304 1049 4 0.381315538608198 RFvsST 103455 617686259 617582805 no 102.731982557876 TraesCS6A01G372600 chr6A_596421934 chr6A 596421934 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 596421256 596422304 1049 4 0.381315538608198 RFvsST 103455 617686259 617582805 no 102.731982557876 TraesCS6A01G372600 chr6A_596422225 chr6A 596422225 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 596421256 596422304 1049 4 0.381315538608198 RFvsST 103455 617686259 617582805 no 102.731982557876 TraesCS6A01G373200 chr6A_596589834 chr6A 596589834 G G A A 4 synonymous_variant LOW transcript unique_Triplet 596581391 596591057 9667 5 0.0517223544015724 RFvsST 103455 617686259 617582805 no 43.9122815560407 TraesCS6A01G373200 chr6A_596581255 chr6A 596581255 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 596581391 596591057 9667 5 0.0517223544015724 RFvsST 103455 617686259 617582805 no 43.9122815560407 TraesCS6A01G373200 chr6A_596582674 chr6A 596582674 G G T T 4 missense_variant MODERATE transcript unique_Triplet 596581391 596591057 9667 5 0.0517223544015724 RFvsST 103455 617686259 617582805 no 43.9122815560407 TraesCS6A01G373200 chr6A_596583469 chr6A 596583469 C C T T 4 synonymous_variant LOW transcript unique_Triplet 596581391 596591057 9667 5 0.0517223544015724 RFvsST 103455 617686259 617582805 no 43.9122815560407 TraesCS6A01G373200 chr6A_596583156 chr6A 596583156 A A T T 4 missense_variant MODERATE transcript unique_Triplet 596581391 596591057 9667 5 0.0517223544015724 RFvsST 103455 617686259 617582805 no 43.9122815560407 TraesCS6A01G374600 chr6A_597342567 chr6A 597342567 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 597340222 597342820 2599 5 0.192381685263563 RFvsST 103455 617686259 617582805 no 216.977418562514 TraesCS6A01G374600 chr6A_597342290 chr6A 597342290 C G C G 3 synonymous_variant LOW transcript unique_Triplet 597340222 597342820 2599 5 0.192381685263563 RFvsST 103455 617686259 617582805 no 216.977418562514 TraesCS6A01G374600 chr6A_597342926 chr6A 597342926 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 597340222 597342820 2599 5 0.192381685263563 RFvsST 103455 617686259 617582805 no 216.977418562514 TraesCS6A01G374600 chr6A_597341780 chr6A 597341780 T C T C 3 synonymous_variant LOW transcript unique_Triplet 597340222 597342820 2599 5 0.192381685263563 RFvsST 103455 617686259 617582805 no 216.977418562514 TraesCS6A01G374600 chr6A_597340361 chr6A 597340361 A G A G 3 synonymous_variant LOW transcript unique_Triplet 597340222 597342820 2599 5 0.192381685263563 RFvsST 103455 617686259 617582805 no 216.977418562514 TraesCS6A01G374700 chr6A_597357165 chr6A 597357165 A G A G 3 synonymous_variant LOW transcript unique_Triplet 597351318 597358753 7436 5 0.0672404518558365 RFvsST 103455 617686259 617582805 no 204.140719155642 TraesCS6A01G374700 chr6A_597354641 chr6A 597354641 G A G A 3 missense_variant MODERATE transcript unique_Triplet 597351318 597358753 7436 5 0.0672404518558365 RFvsST 103455 617686259 617582805 no 204.140719155642 TraesCS6A01G374700 chr6A_597351302 chr6A 597351302 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 597351318 597358753 7436 5 0.0672404518558365 RFvsST 103455 617686259 617582805 no 204.140719155642 TraesCS6A01G374700 chr6A_597351418 chr6A 597351418 A C A C 3 missense_variant MODERATE transcript unique_Triplet 597351318 597358753 7436 5 0.0672404518558365 RFvsST 103455 617686259 617582805 no 204.140719155642 TraesCS6A01G374700 chr6A_597354640 chr6A 597354640 C T C T 3 missense_variant MODERATE transcript unique_Triplet 597351318 597358753 7436 5 0.0672404518558365 RFvsST 103455 617686259 617582805 no 204.140719155642 TraesCS6A01G376200 chr6A_598157535 chr6A 598157535 C G C G 3 synonymous_variant LOW transcript non_Triplet 598154841 598157849 3009 2 0.0664672648720505 RFvsST 103455 617686259 617582805 no 763.180081135949 TraesCS6A01G376200 chr6A_598157612 chr6A 598157612 T C T C 3 missense_variant MODERATE transcript non_Triplet 598154841 598157849 3009 2 0.0664672648720505 RFvsST 103455 617686259 617582805 no 763.180081135949 TraesCS6A01G377400 chr6A_598635440 chr6A 598635440 G A G A 3 missense_variant MODERATE transcript unique_Triplet 598635346 598638269 2924 1 0.0341997264021888 RFvsST 103455 617686259 617582805 no 128.50795966409 TraesCS6A01G377800 chr6A_599035194 chr6A 599035194 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 599027963 599031545 3583 1 0.0279095729835334 RFvsST 103455 617686259 617582805 no 22.3398457421903 TraesCS6A01G379800 chr6A_600404481 chr6A 600404481 A G A G 3 missense_variant MODERATE transcript unique_Triplet 600403258 600406136 2879 3 0.104202848211184 RFvsST 103455 617686259 617582805 no 71.1118252393178 TraesCS6A01G379800 chr6A_600406037 chr6A 600406037 A G A G 3 synonymous_variant LOW transcript unique_Triplet 600403258 600406136 2879 3 0.104202848211184 RFvsST 103455 617686259 617582805 no 71.1118252393178 TraesCS6A01G379800 chr6A_600406158 chr6A 600406158 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 600403258 600406136 2879 3 0.104202848211184 RFvsST 103455 617686259 617582805 no 71.1118252393178 TraesCS6A01G379900 chr6A_600456746 chr6A 600456746 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 600452752 600456307 3556 1 0.0281214848143982 RFvsST 103455 617686259 617582805 no 30.1982201450554 TraesCS6A01G380000 chr6A_600457541 chr6A 600457541 G T G T 3 synonymous_variant LOW transcript non_Triplet 600456807 600461668 4862 3 0.0617030028794735 RFvsST 103455 617686259 617582805 no 106.268342178148 TraesCS6A01G380000 chr6A_600458115 chr6A 600458115 G A G A 3 synonymous_variant LOW transcript non_Triplet 600456807 600461668 4862 3 0.0617030028794735 RFvsST 103455 617686259 617582805 no 106.268342178148 TraesCS6A01G380000 chr6A_600457468 chr6A 600457468 C T C T 3 missense_variant MODERATE transcript non_Triplet 600456807 600461668 4862 3 0.0617030028794735 RFvsST 103455 617686259 617582805 no 106.268342178148 TraesCS6A01G381800 chr6A_601222454 chr6A 601222454 C C G G 4 synonymous_variant LOW transcript unique_Triplet 601222204 601228307 6104 1 0.0163826998689384 RFvsST 103455 617686259 617582805 no 27.3317163177698 TraesCS6A01G382500 chr6A_601873142 chr6A 601873142 C C A A 4 missense_variant MODERATE transcript non_Triplet 601872235 601874114 1880 5 0.265957446808511 RFvsST 103455 617686259 617582805 no 438.989284213734 TraesCS6A01G382500 chr6A_601873977 chr6A 601873977 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 601872235 601874114 1880 5 0.265957446808511 RFvsST 103455 617686259 617582805 no 438.989284213734 TraesCS6A01G382500 chr6A_601872409 chr6A 601872409 G G T T 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 601872235 601874114 1880 5 0.265957446808511 RFvsST 103455 617686259 617582805 no 438.989284213734 TraesCS6A01G382500 chr6A_601872303 chr6A 601872303 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 601872235 601874114 1880 5 0.265957446808511 RFvsST 103455 617686259 617582805 no 438.989284213734 TraesCS6A01G382500 chr6A_601874040 chr6A 601874040 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 601872235 601874114 1880 5 0.265957446808511 RFvsST 103455 617686259 617582805 no 438.989284213734 TraesCS6A01G383400 chr6A_602454416 chr6A 602454416 G G A A 4 synonymous_variant LOW transcript unique_Triplet 602443856 602454777 10922 3 0.0274674967954587 RFvsST 103455 617686259 617582805 no 72.2923409142348 TraesCS6A01G383400 chr6A_602451927 chr6A 602451927 C C T T 4 synonymous_variant LOW transcript unique_Triplet 602443856 602454777 10922 3 0.0274674967954587 RFvsST 103455 617686259 617582805 no 72.2923409142348 TraesCS6A01G383400 chr6A_602454555 chr6A 602454555 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 602443856 602454777 10922 3 0.0274674967954587 RFvsST 103455 617686259 617582805 no 72.2923409142348 TraesCS6A01G383800 chr6A_602711523 chr6A 602711523 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 602699767 602711449 11683 3 0.0256783360438244 RFvsST 103455 617686259 617582805 no 316.046949735977 TraesCS6A01G383800 chr6A_602706193 chr6A 602706193 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 602699767 602711449 11683 3 0.0256783360438244 RFvsST 103455 617686259 617582805 no 316.046949735977 TraesCS6A01G383800 chr6A_602707143 chr6A 602707143 T T A A 4 synonymous_variant LOW transcript unique_Triplet 602699767 602711449 11683 3 0.0256783360438244 RFvsST 103455 617686259 617582805 no 316.046949735977 TraesCS6A01G384000 chr6A_602725704 chr6A 602725704 G G A A 4 synonymous_variant LOW transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725437 chr6A 602725437 A A G G 4 synonymous_variant LOW transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725652 chr6A 602725652 T T A A 4 missense_variant MODERATE transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725272 chr6A 602725272 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725689 chr6A 602725689 A A T T 4 synonymous_variant LOW transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725350 chr6A 602725350 A A C C 4 synonymous_variant LOW transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384000 chr6A_602725508 chr6A 602725508 C C T T 4 missense_variant MODERATE transcript non_Triplet 602725335 602727028 1694 7 0.413223140495868 RFvsST 103455 617686259 617582805 no 136.451498352748 TraesCS6A01G384300 chr6A_602815435 chr6A 602815435 C C G G 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602816073 chr6A 602816073 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815276 chr6A 602815276 A A C C 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602816077 chr6A 602816077 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815273 chr6A 602815273 C C A A 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815549 chr6A 602815549 G G C C 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815552 chr6A 602815552 G G T T 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815003 chr6A 602815003 T T C C 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G384300 chr6A_602815168 chr6A 602815168 A A G G 4 synonymous_variant LOW transcript unique_Triplet 602814931 602816001 1071 9 0.840336134453782 RFvsST 103455 617686259 617582805 no 88.7515545586801 TraesCS6A01G385200 chr6A_603135994 chr6A 603135994 C C T T 4 synonymous_variant LOW transcript unique_Triplet 603135908 603136410 503 1 0.198807157057654 RFvsST 103455 617686259 617582805 no 13.0081062767564 TraesCS6A01G385800 chr6A_603203257 chr6A 603203257 C G C G 3 missense_variant MODERATE transcript unique_Triplet 603203149 603204375 1227 1 0.0814995925020375 RFvsST 103455 617686259 617582805 no 314.989296513182 TraesCS6A01G385900 chr6A_603205598 chr6A 603205598 A G A G 3 synonymous_variant LOW transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G385900 chr6A_603205762 chr6A 603205762 A G A G 3 synonymous_variant LOW transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G385900 chr6A_603205544 chr6A 603205544 T C T C 3 synonymous_variant LOW transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G385900 chr6A_603208240 chr6A 603208240 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G385900 chr6A_603206368 chr6A 603206368 G A G A 3 synonymous_variant LOW transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G385900 chr6A_603204981 chr6A 603204981 T A T A 3 missense_variant MODERATE transcript non_Triplet 603204896 603206564 1669 6 0.359496704613541 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G386300 chr6A_603267506 chr6A 603267506 T C T C 3 synonymous_variant LOW transcript unique_Triplet 603266833 603268238 1406 3 0.213371266002845 RFvsST 103455 617686259 617582805 no 226.044159923614 TraesCS6A01G386300 chr6A_603267015 chr6A 603267015 A G A G 3 synonymous_variant LOW transcript unique_Triplet 603266833 603268238 1406 3 0.213371266002845 RFvsST 103455 617686259 617582805 no 226.044159923614 TraesCS6A01G386300 chr6A_603267178 chr6A 603267178 A G A G 3 missense_variant MODERATE transcript unique_Triplet 603266833 603268238 1406 3 0.213371266002845 RFvsST 103455 617686259 617582805 no 226.044159923614 TraesCS6A01G386400 chr6A_603272211 chr6A 603272211 T C T C 3 synonymous_variant LOW transcript unique_Triplet 603272001 603272741 741 1 0.134952766531714 RFvsST 103455 617686259 617582805 no 345.06981684595 TraesCS6A01G387600 chr6A_604114994 chr6A 604114994 A G A G 3 missense_variant MODERATE transcript unique_Triplet 604107487 604115408 7922 1 0.0126230749810654 RFvsST 103455 617686259 617582805 no 367.96059719507 TraesCS6A01G389100 chr6A_604879123 chr6A 604879123 T T C C 4 synonymous_variant LOW transcript unique_Triplet 604876843 604880765 3923 5 0.12745347947999 RFvsST 103455 617686259 617582805 no 100.852550927817 TraesCS6A01G389100 chr6A_604879314 chr6A 604879314 C T C T 3 missense_variant MODERATE transcript unique_Triplet 604876843 604880765 3923 5 0.12745347947999 RFvsST 103455 617686259 617582805 no 100.852550927817 TraesCS6A01G389100 chr6A_604880589 chr6A 604880589 C C G G 4 missense_variant MODERATE transcript unique_Triplet 604876843 604880765 3923 5 0.12745347947999 RFvsST 103455 617686259 617582805 no 100.852550927817 TraesCS6A01G389100 chr6A_604879147 chr6A 604879147 A A G G 4 synonymous_variant LOW transcript unique_Triplet 604876843 604880765 3923 5 0.12745347947999 RFvsST 103455 617686259 617582805 no 100.852550927817 TraesCS6A01G389100 chr6A_604880409 chr6A 604880409 G G C C 4 synonymous_variant LOW transcript unique_Triplet 604876843 604880765 3923 5 0.12745347947999 RFvsST 103455 617686259 617582805 no 100.852550927817 TraesCS6A01G389300 chr6A_604887679 chr6A 604887679 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 604883269 604887711 4443 3 0.0675219446320054 RFvsST 103455 617686259 617582805 no 2327.82483694411 TraesCS6A01G389300 chr6A_604885336 chr6A 604885336 A A T T 4 synonymous_variant LOW transcript nonUnique_Triplet 604883269 604887711 4443 3 0.0675219446320054 RFvsST 103455 617686259 617582805 no 2327.82483694411 TraesCS6A01G389300 chr6A_604883860 chr6A 604883860 C C T T,A 4 synonymous_variant LOW transcript nonUnique_Triplet 604883269 604887711 4443 3 0.0675219446320054 RFvsST 103455 617686259 617582805 no 2327.82483694411 TraesCS6A01G390600 chr6A_605376109 chr6A 605376109 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 605375921 605381628 5708 5 0.0875963559915907 RFvsST 103455 617686259 617582805 no 111.090949941393 TraesCS6A01G390600 chr6A_605376001 chr6A 605376001 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 605375921 605381628 5708 5 0.0875963559915907 RFvsST 103455 617686259 617582805 no 111.090949941393 TraesCS6A01G390600 chr6A_605380926 chr6A 605380926 C T C T 3 missense_variant MODERATE transcript unique_Triplet 605375921 605381628 5708 5 0.0875963559915907 RFvsST 103455 617686259 617582805 no 111.090949941393 TraesCS6A01G390600 chr6A_605381376 chr6A 605381376 T C T C 3 synonymous_variant LOW transcript unique_Triplet 605375921 605381628 5708 5 0.0875963559915907 RFvsST 103455 617686259 617582805 no 111.090949941393 TraesCS6A01G390600 chr6A_605376262 chr6A 605376262 A G A G 3 synonymous_variant LOW transcript unique_Triplet 605375921 605381628 5708 5 0.0875963559915907 RFvsST 103455 617686259 617582805 no 111.090949941393 TraesCS6A01G390800 chr6A_605544866 chr6A 605544866 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 605545157 605558328 13172 4 0.0303674460977832 RFvsST 103455 617686259 617582805 no 46.2247009323464 TraesCS6A01G390800 chr6A_605551464 chr6A 605551464 T C T C 3 synonymous_variant LOW transcript unique_Triplet 605545157 605558328 13172 4 0.0303674460977832 RFvsST 103455 617686259 617582805 no 46.2247009323464 TraesCS6A01G390800 chr6A_605550150 chr6A 605550150 T C T C 3 synonymous_variant LOW transcript unique_Triplet 605545157 605558328 13172 4 0.0303674460977832 RFvsST 103455 617686259 617582805 no 46.2247009323464 TraesCS6A01G390800 chr6A_605551514 chr6A 605551514 C T C T 3 synonymous_variant LOW transcript unique_Triplet 605545157 605558328 13172 4 0.0303674460977832 RFvsST 103455 617686259 617582805 no 46.2247009323464 TraesCS6A01G390900 chr6A_605558530 chr6A 605558530 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 605559645 605565206 5562 5 0.0898957209636821 RFvsST 103455 617686259 617582805 no 218.200059386686 TraesCS6A01G390900 chr6A_605563354 chr6A 605563354 C T C T 3 missense_variant MODERATE transcript unique_Triplet 605559645 605565206 5562 5 0.0898957209636821 RFvsST 103455 617686259 617582805 no 218.200059386686 TraesCS6A01G390900 chr6A_605564328 chr6A 605564328 C T C T 3 synonymous_variant LOW transcript unique_Triplet 605559645 605565206 5562 5 0.0898957209636821 RFvsST 103455 617686259 617582805 no 218.200059386686 TraesCS6A01G390900 chr6A_605564404 chr6A 605564404 T C T C 3 missense_variant MODERATE transcript unique_Triplet 605559645 605565206 5562 5 0.0898957209636821 RFvsST 103455 617686259 617582805 no 218.200059386686 TraesCS6A01G390900 chr6A_605564591 chr6A 605564591 C A C A 3 missense_variant MODERATE transcript unique_Triplet 605559645 605565206 5562 5 0.0898957209636821 RFvsST 103455 617686259 617582805 no 218.200059386686 TraesCS6A01G392000 chr6A_606763149 chr6A 606763149 T T C C 4 synonymous_variant LOW transcript unique_Triplet 606761455 606766121 4667 3 0.0642811227769445 RFvsST 103455 617686259 617582805 no 142.75135900378 TraesCS6A01G392000 chr6A_606762970 chr6A 606762970 T T C C 4 synonymous_variant LOW transcript unique_Triplet 606761455 606766121 4667 3 0.0642811227769445 RFvsST 103455 617686259 617582805 no 142.75135900378 TraesCS6A01G392000 chr6A_606767013 chr6A 606767013 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 606761455 606766121 4667 3 0.0642811227769445 RFvsST 103455 617686259 617582805 no 142.75135900378 TraesCS6A01G392100 chr6A_606768255 chr6A 606768255 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606766933 606768192 1260 1 0.0793650793650794 RFvsST 103455 617686259 617582805 no 6441.13296769059 TraesCS6A01G392500 chr6A_606972982 chr6A 606972982 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606975229 606979675 4447 2 0.044974139869575 RFvsST 103455 617686259 617582805 no 13.1505043471655 TraesCS6A01G392500 chr6A_606972908 chr6A 606972908 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606975229 606979675 4447 2 0.044974139869575 RFvsST 103455 617686259 617582805 no 13.1505043471655 TraesCS6A01G392600 chr6A_606986001 chr6A 606986001 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606985940 chr6A 606985940 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606983409 chr6A 606983409 A A G G 4 missense_variant MODERATE transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606985934 chr6A 606985934 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606983351 chr6A 606983351 G G C C 4 missense_variant MODERATE transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606983104 chr6A 606983104 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392600 chr6A_606986022 chr6A 606986022 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 606983238 606985162 1925 7 0.363636363636364 RFvsST 103455 617686259 617582805 no 497.699536629562 TraesCS6A01G392700 chr6A_606990135 chr6A 606990135 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606990195 chr6A 606990195 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606990235 chr6A 606990235 C C T T 4 missense_variant MODERATE transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986157 chr6A 606986157 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986356 chr6A 606986356 G G A A 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606990048 chr6A 606990048 C C G G 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986775 chr6A 606986775 G G A A 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606989817 chr6A 606989817 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986799 chr6A 606986799 G G A A 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986184 chr6A 606986184 C C A A 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606989871 chr6A 606989871 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986398 chr6A 606986398 T T C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606989822 chr6A 606989822 G G T T 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986154 chr6A 606986154 C C G G 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606990096 chr6A 606990096 C C G G 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606986377 chr6A 606986377 G G A A 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392700 chr6A_606990051 chr6A 606990051 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606986076 606990377 4302 17 0.395165039516504 RFvsST 103455 617686259 617582805 no 200.533721720901 TraesCS6A01G392800 chr6A_606992564 chr6A 606992564 A A G G 4 synonymous_variant LOW transcript unique_Triplet 606991425 606996675 5251 4 0.0761759664825748 RFvsST 103455 617686259 617582805 no 38.5805405855019 TraesCS6A01G392800 chr6A_606996221 chr6A 606996221 C C A A 4 missense_variant MODERATE transcript unique_Triplet 606991425 606996675 5251 4 0.0761759664825748 RFvsST 103455 617686259 617582805 no 38.5805405855019 TraesCS6A01G392800 chr6A_606996432 chr6A 606996432 T T G G 4 synonymous_variant LOW transcript unique_Triplet 606991425 606996675 5251 4 0.0761759664825748 RFvsST 103455 617686259 617582805 no 38.5805405855019 TraesCS6A01G392800 chr6A_606996537 chr6A 606996537 G G C C 4 synonymous_variant LOW transcript unique_Triplet 606991425 606996675 5251 4 0.0761759664825748 RFvsST 103455 617686259 617582805 no 38.5805405855019 TraesCS6A01G393100 chr6A_607052517 chr6A 607052517 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 607054914 607056716 1803 1 0.0554631170271769 RFvsST 103455 617686259 617582805 no 11.6042202551803 TraesCS6A01G394200 chr6A_607932528 chr6A 607932528 C C T T 4 synonymous_variant LOW transcript unique_Triplet 607931244 607933233 1990 1 0.050251256281407 RFvsST 103455 617686259 617582805 no No_match TraesCS6A01G394300 chr6A_607953273 chr6A 607953273 C C T T 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607954859 chr6A 607954859 T T C C 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607956669 chr6A 607956669 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607954103 chr6A 607954103 G G A A 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607955766 chr6A 607955766 T T C C 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607954835 chr6A 607954835 C C T T 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607953306 chr6A 607953306 G G A A 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607956543 chr6A 607956543 A A G G 4 missense_variant MODERATE transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607956225 chr6A 607956225 G G A A 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607955850 chr6A 607955850 T T C C 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607953183 chr6A 607953183 A A G G 4 synonymous_variant LOW transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607956733 chr6A 607956733 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607956791 chr6A 607956791 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394300 chr6A_607953464 chr6A 607953464 C C T T 4 missense_variant MODERATE transcript unique_Triplet 607951828 607956577 4750 14 0.294736842105263 RFvsST 103455 617686259 617582805 no 380.973487910949 TraesCS6A01G394700 chr6A_608078319 chr6A 608078319 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 608073356 608074353 998 1 0.100200400801603 RFvsST 103455 617686259 617582805 no 15.0614803387967 TraesCS6A01G394800 chr6A_608081934 chr6A 608081934 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081252 chr6A 608081252 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081205 chr6A 608081205 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081980 chr6A 608081980 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081737 chr6A 608081737 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608080632 chr6A 608080632 A A T T 4 intron_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081858 chr6A 608081858 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081981 chr6A 608081981 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394800 chr6A_608081209 chr6A 608081209 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608078200 608080790 2591 9 0.347356233114628 RFvsST 103455 617686259 617582805 no 341.981461721849 TraesCS6A01G394900 chr6A_608090602 chr6A 608090602 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608094166 chr6A 608094166 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608092927 chr6A 608092927 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090674 chr6A 608090674 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090680 chr6A 608090680 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608093926 chr6A 608093926 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608093080 chr6A 608093080 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090830 chr6A 608090830 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608094993 chr6A 608094993 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608093026 chr6A 608093026 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608095112 chr6A 608095112 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608093065 chr6A 608093065 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608095120 chr6A 608095120 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608095068 chr6A 608095068 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090766 chr6A 608090766 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608092711 chr6A 608092711 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608094795 chr6A 608094795 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090875 chr6A 608090875 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090647 chr6A 608090647 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608093943 chr6A 608093943 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090956 chr6A 608090956 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090468 chr6A 608090468 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608094004 chr6A 608094004 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090415 chr6A 608090415 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090473 chr6A 608090473 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608092663 chr6A 608092663 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G394900 chr6A_608090557 chr6A 608090557 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 608090536 608094090 3555 27 0.759493670886076 RFvsST 103455 617686259 617582805 no 196.480763240991 TraesCS6A01G396400 chr6A_608634704 chr6A 608634704 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608630670 608634387 3718 3 0.0806885422270038 RFvsST 103455 617686259 617582805 no 877.838993648368 TraesCS6A01G396400 chr6A_608634612 chr6A 608634612 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 608630670 608634387 3718 3 0.0806885422270038 RFvsST 103455 617686259 617582805 no 877.838993648368 TraesCS6A01G396400 chr6A_608634778 chr6A 608634778 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 608630670 608634387 3718 3 0.0806885422270038 RFvsST 103455 617686259 617582805 no 877.838993648368 TraesCS6A01G399000 chr6A_609165883 chr6A 609165883 G G T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609167125 chr6A 609167125 C C T T 4 synonymous_variant LOW transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609168490 chr6A 609168490 T T G G 4 synonymous_variant LOW transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609167021 chr6A 609167021 C C T T 4 missense_variant MODERATE transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609168564 chr6A 609168564 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609165876 chr6A 609165876 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399000 chr6A_609166787 chr6A 609166787 A A T T 4 synonymous_variant LOW transcript unique_Triplet 609165756 609168631 2876 7 0.243393602225313 RFvsST 103455 617686259 617582805 no 87.1931528634703 TraesCS6A01G399100 chr6A_609172461 chr6A 609172461 T T C C 4 synonymous_variant LOW transcript unique_Triplet 609168874 609172782 3909 1 0.0255819902788437 RFvsST 103455 617686259 617582805 no 212.627823434833 TraesCS6A01G399400 chr6A_609285575 chr6A 609285575 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609285698 609288266 2569 2 0.0778513040093421 RFvsST 103455 617686259 617582805 no 315.167393546197 TraesCS6A01G399400 chr6A_609288178 chr6A 609288178 C C T T 4 missense_variant MODERATE transcript unique_Triplet 609285698 609288266 2569 2 0.0778513040093421 RFvsST 103455 617686259 617582805 no 315.167393546197 TraesCS6A01G399600 chr6A_609379828 chr6A 609379828 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 609379689 609383659 3971 1 0.025182573659028 RFvsST 103455 617686259 617582805 no 646.413028500112 TraesCS6A01G400000 chr6A_609454070 chr6A 609454070 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609454002 chr6A 609454002 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609451205 chr6A 609451205 G A G A 3 synonymous_variant LOW transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609454080 chr6A 609454080 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609454039 chr6A 609454039 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609446715 chr6A 609446715 C T C T 3 missense_variant MODERATE transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400000 chr6A_609450370 chr6A 609450370 C G C G 3 synonymous_variant LOW transcript unique_Triplet 609446618 609453800 7183 7 0.0974523179729918 RFvsST 103455 617686259 617582805 no 1168.10525750949 TraesCS6A01G400300 chr6A_609561811 chr6A 609561811 C A C A 3 synonymous_variant LOW transcript non_Triplet 609559041 609561847 2807 2 0.0712504453152832 RFvsST 103455 617686259 617582805 no 17.7686435658132 TraesCS6A01G400300 chr6A_609560122 chr6A 609560122 C C G G 4 synonymous_variant LOW transcript non_Triplet 609559041 609561847 2807 2 0.0712504453152832 RFvsST 103455 617686259 617582805 no 17.7686435658132 TraesCS6A01G400500 chr6A_609575820 chr6A 609575820 C T C T 3 synonymous_variant LOW transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G400500 chr6A_609575671 chr6A 609575671 A A T T 4 intron_variant MODIFIER transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G400500 chr6A_609573868 chr6A 609573868 A A C C 4 missense_variant MODERATE transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G400500 chr6A_609574769 chr6A 609574769 A A G G 4 missense_variant MODERATE transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G400500 chr6A_609574767 chr6A 609574767 T T C C 4 synonymous_variant LOW transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G400500 chr6A_609575659 chr6A 609575659 T T C C 4 intron_variant MODIFIER transcript non_Triplet 609573316 609577524 4209 6 0.142551674982181 RFvsST 103455 617686259 617582805 no 255.313020798426 TraesCS6A01G401500 chr6A_609972265 chr6A 609972265 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609972296 chr6A 609972296 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609974849 chr6A 609974849 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609973758 chr6A 609973758 C A C A 3 missense_variant MODERATE transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609974862 chr6A 609974862 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609972396 chr6A 609972396 C C G G 4 synonymous_variant LOW transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609972045 chr6A 609972045 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401500 chr6A_609972089 chr6A 609972089 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 609972318 609973926 1609 8 0.497203231821007 RFvsST 103455 617686259 617582805 no 385.426115192383 TraesCS6A01G401900 chr6A_610196958 chr6A 610196958 C T C T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 610196763 610200515 3753 4 0.10658140154543 RFvsST 103455 617686259 617582805 no 797.807304150244 TraesCS6A01G401900 chr6A_610196903 chr6A 610196903 C G C G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 610196763 610200515 3753 4 0.10658140154543 RFvsST 103455 617686259 617582805 no 797.807304150244 TraesCS6A01G401900 chr6A_610200235 chr6A 610200235 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 610196763 610200515 3753 4 0.10658140154543 RFvsST 103455 617686259 617582805 no 797.807304150244 TraesCS6A01G401900 chr6A_610197130 chr6A 610197130 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 610196763 610200515 3753 4 0.10658140154543 RFvsST 103455 617686259 617582805 no 797.807304150244 TraesCS6A01G403600 chr6A_610899405 chr6A 610899405 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 610897917 610899577 1661 1 0.0602046959662854 RFvsST 103455 617686259 617582805 no 32.8846984635145 TraesCS6A01G406900 chr6A_612109904 chr6A 612109904 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 612107354 612109520 2167 1 0.0461467466543609 RFvsST 103455 617686259 617582805 no 94.1825596926066 TraesCS6B01G000300 chr6B_172581 chr6B 172581 G G A A 4 synonymous_variant LOW transcript unique_Triplet 164159 173258 9100 2 0.021978021978022 RFvsST 111809 720561207 720449399 no 641.335612519325 TraesCS6B01G000300 chr6B_172588 chr6B 172588 A T A T 3 missense_variant MODERATE transcript unique_Triplet 164159 173258 9100 2 0.021978021978022 RFvsST 111809 720561207 720449399 no 641.335612519325 TraesCS6B01G004000 chr6B_3127409 chr6B 3127409 G G A A 4 synonymous_variant LOW transcript non_Triplet 3122693 3127984 5292 1 0.018896447467876 RFvsST 111809 720561207 720449399 no 59.5118817266864 TraesCS6B01G004300 chr6B_3383258 chr6B 3383258 G G A A 4 synonymous_variant LOW transcript unique_Triplet 3383010 3384214 1205 1 0.0829875518672199 RFvsST 111809 720561207 720449399 no 488.687501393148 TraesCS6B01G004400 chr6B_3385155 chr6B 3385155 T T C C 4 synonymous_variant LOW transcript unique_Triplet 3384841 3387441 2601 2 0.0768935024990388 RFvsST 111809 720561207 720449399 no 1124.37331784464 TraesCS6B01G004400 chr6B_3384783 chr6B 3384783 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3384841 3387441 2601 2 0.0768935024990388 RFvsST 111809 720561207 720449399 no 1124.37331784464 TraesCS6B01G005100 chr6B_3881326 chr6B 3881326 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 3878974 3881056 2083 1 0.0480076812289966 RFvsST 111809 720561207 720449399 no 9.99653696345992 TraesCS6B01G005200 chr6B_3882155 chr6B 3882155 G A G A 3 missense_variant MODERATE transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3887123 chr6B 3887123 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3882816 chr6B 3882816 T T C C 4 missense_variant MODERATE transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3885115 chr6B 3885115 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3885155 chr6B 3885155 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3881829 chr6B 3881829 T C T C 3 synonymous_variant LOW transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3882631 chr6B 3882631 A G A G 3 missense_variant MODERATE transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3881964 chr6B 3881964 G A G A 3 synonymous_variant LOW transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3882566 chr6B 3882566 C C G G 4 synonymous_variant LOW transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3885335 chr6B 3885335 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3881436 chr6B 3881436 G G A A 4 synonymous_variant LOW transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3881460 chr6B 3881460 G G C C 4 synonymous_variant LOW transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005200 chr6B_3885731 chr6B 3885731 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 3881370 3882919 1550 13 0.838709677419355 RFvsST 111809 720561207 720449399 no 240.377398747796 TraesCS6B01G005300 chr6B_3889842 chr6B 3889842 G G A A 4 missense_variant MODERATE transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3889334 chr6B 3889334 G G A A 4 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3889322 chr6B 3889322 G A G A 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3889217 chr6B 3889217 T C T C 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3888941 chr6B 3888941 A G A G 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3890185 chr6B 3890185 G A G A 3 missense_variant MODERATE transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3890436 chr6B 3890436 A A G G 4 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3887385 chr6B 3887385 G A G A 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3889031 chr6B 3889031 C T C T 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3888902 chr6B 3888902 G A G A 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3889028 chr6B 3889028 G G A A 4 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3887315 chr6B 3887315 T G T G 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005300 chr6B_3888686 chr6B 3888686 T C T C 3 synonymous_variant LOW transcript non_Triplet 3887211 3890825 3615 13 0.359612724757953 RFvsST 111809 720561207 720449399 no 230.33257514315 TraesCS6B01G005400 chr6B_4126140 chr6B 4126140 T G C G,C 6 synonymous_variant LOW transcript non_Triplet 4124091 4127957 3867 3 0.0775795190069822 RFvsST 111809 720561207 720449399 no 167.501051424908 TraesCS6B01G005400 chr6B_4124501 chr6B 4124501 T A G A,G 6 missense_variant MODERATE transcript non_Triplet 4124091 4127957 3867 3 0.0775795190069822 RFvsST 111809 720561207 720449399 no 167.501051424908 TraesCS6B01G005400 chr6B_4124239 chr6B 4124239 A A G G 4 missense_variant MODERATE transcript non_Triplet 4124091 4127957 3867 3 0.0775795190069822 RFvsST 111809 720561207 720449399 no 167.501051424908 TraesCS6B01G007400 chr6B_4874664 chr6B 4874664 G G A A 4 synonymous_variant LOW transcript non_Triplet 4873125 4877529 4405 2 0.0454029511918275 RFvsST 111809 720561207 720449399 no 278.039132351838 TraesCS6B01G007400 chr6B_4874543 chr6B 4874543 A A C C 4 missense_variant MODERATE transcript non_Triplet 4873125 4877529 4405 2 0.0454029511918275 RFvsST 111809 720561207 720449399 no 278.039132351838 TraesCS6B01G009700 chr6B_6019185 chr6B 6019185 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6023940 6026666 2727 3 0.11001100110011 RFvsST 111809 720561207 720449399 no 3.55541150203169 TraesCS6B01G009700 chr6B_6019363 chr6B 6019363 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6023940 6026666 2727 3 0.11001100110011 RFvsST 111809 720561207 720449399 no 3.55541150203169 TraesCS6B01G009700 chr6B_6019475 chr6B 6019475 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6023940 6026666 2727 3 0.11001100110011 RFvsST 111809 720561207 720449399 no 3.55541150203169 TraesCS6B01G011300 chr6B_6789418 chr6B 6789418 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 6786048 6786542 495 3 0.606060606060606 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G011300 chr6B_6789447 chr6B 6789447 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 6786048 6786542 495 3 0.606060606060606 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G011300 chr6B_6789422 chr6B 6789422 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 6786048 6786542 495 3 0.606060606060606 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G011400 chr6B_6789899 chr6B 6789899 A A G G 4 missense_variant MODERATE transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789948 chr6B 6789948 T T C C 4 missense_variant MODERATE transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789730 chr6B 6789730 G G A A 4 synonymous_variant LOW transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789678 chr6B 6789678 C C T T 4 missense_variant MODERATE transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789883 chr6B 6789883 G G A A 4 synonymous_variant LOW transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789724 chr6B 6789724 A A C C 4 synonymous_variant LOW transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789802 chr6B 6789802 C C A A 4 synonymous_variant LOW transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G011400 chr6B_6789790 chr6B 6789790 C C T T 4 synonymous_variant LOW transcript non_Triplet 6789483 6789975 493 8 1.62271805273834 RFvsST 111809 720561207 720449399 no 221.638989773498 TraesCS6B01G012700 chr6B_7939309 chr6B 7939309 C C T T 4 missense_variant MODERATE transcript unique_Triplet 7937933 7943891 5959 4 0.067125356603457 RFvsST 111809 720561207 720449399 no 107.544607087905 TraesCS6B01G012700 chr6B_7943302 chr6B 7943302 G G A A 4 missense_variant MODERATE transcript unique_Triplet 7937933 7943891 5959 4 0.067125356603457 RFvsST 111809 720561207 720449399 no 107.544607087905 TraesCS6B01G012700 chr6B_7938743 chr6B 7938743 G G A A 4 missense_variant MODERATE transcript unique_Triplet 7937933 7943891 5959 4 0.067125356603457 RFvsST 111809 720561207 720449399 no 107.544607087905 TraesCS6B01G012700 chr6B_7937929 chr6B 7937929 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 7937933 7943891 5959 4 0.067125356603457 RFvsST 111809 720561207 720449399 no 107.544607087905 TraesCS6B01G013700 chr6B_8418329 chr6B 8418329 C T C T 3 synonymous_variant LOW transcript non_Triplet 8416833 8420160 3328 1 0.0300480769230769 RFvsST 111809 720561207 720449399 no 93.0456453882699 TraesCS6B01G015000 chr6B_9003943 chr6B 9003943 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 9001879 9003659 1781 1 0.0561482313307131 RFvsST 111809 720561207 720449399 no 13182.2203125279 TraesCS6B01G015300 chr6B_9080877 chr6B 9080877 C C T T 4 synonymous_variant LOW transcript non_Triplet 9079386 9081105 1720 2 0.116279069767442 RFvsST 111809 720561207 720449399 no 12.60538851289 TraesCS6B01G015300 chr6B_9080889 chr6B 9080889 T T C C 4 synonymous_variant LOW transcript non_Triplet 9079386 9081105 1720 2 0.116279069767442 RFvsST 111809 720561207 720449399 no 12.60538851289 TraesCS6B01G015400 chr6B_9099196 chr6B 9099196 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 9095416 9097832 2417 3 0.124120810922631 RFvsST 111809 720561207 720449399 no 14.410142654925 TraesCS6B01G015400 chr6B_9099193 chr6B 9099193 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 9095416 9097832 2417 3 0.124120810922631 RFvsST 111809 720561207 720449399 no 14.410142654925 TraesCS6B01G015400 chr6B_9098992 chr6B 9098992 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 9095416 9097832 2417 3 0.124120810922631 RFvsST 111809 720561207 720449399 no 14.410142654925 TraesCS6B01G017800 chr6B_11298665 chr6B 11298665 C C A A 4 missense_variant MODERATE transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11298492 chr6B 11298492 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11298424 chr6B 11298424 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11299430 chr6B 11299430 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11298582 chr6B 11298582 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11299572 chr6B 11299572 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G017800 chr6B_11298700 chr6B 11298700 T T C C 4 synonymous_variant LOW transcript unique_Triplet 11298628 11299302 675 7 1.03703703703704 RFvsST 111809 720561207 720449399 no 188.468178584416 TraesCS6B01G020900 chr6B_12666953 chr6B 12666953 C T C T 3 synonymous_variant LOW transcript unique_Triplet 12666287 12673728 7442 1 0.013437248051599 RFvsST 111809 720561207 720449399 no 337.122982074558 TraesCS6B01G027100 chr6B_16241451 chr6B 16241451 C G C G 3 intron_variant MODIFIER transcript non_Triplet 16237310 16256410 19101 1 0.00523532799329878 RFvsST 111809 720561207 720449399 no 50.4185852929805 TraesCS6B01G027700 chr6B_16433314 chr6B 16433314 T T C C 4 missense_variant MODERATE transcript non_Triplet 16433149 16434303 1155 1 0.0865800865800866 RFvsST 111809 720561207 720449399 no 194.677810098975 TraesCS6B01G028600 chr6B_17226753 chr6B 17226753 A A G G 4 missense_variant MODERATE transcript unique_Triplet 17226532 17232198 5667 5 0.0882301041115229 RFvsST 111809 720561207 720449399 no 49.6941513000538 TraesCS6B01G028600 chr6B_17226498 chr6B 17226498 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17226532 17232198 5667 5 0.0882301041115229 RFvsST 111809 720561207 720449399 no 49.6941513000538 TraesCS6B01G028600 chr6B_17226740 chr6B 17226740 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17226532 17232198 5667 5 0.0882301041115229 RFvsST 111809 720561207 720449399 no 49.6941513000538 TraesCS6B01G028600 chr6B_17232122 chr6B 17232122 A A C C 4 missense_variant MODERATE transcript unique_Triplet 17226532 17232198 5667 5 0.0882301041115229 RFvsST 111809 720561207 720449399 no 49.6941513000538 TraesCS6B01G028600 chr6B_17229772 chr6B 17229772 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17226532 17232198 5667 5 0.0882301041115229 RFvsST 111809 720561207 720449399 no 49.6941513000538 TraesCS6B01G028700 chr6B_17379181 chr6B 17379181 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17377249 17379056 1808 1 0.0553097345132743 RFvsST 111809 720561207 720449399 no 5.54890437270461 TraesCS6B01G028800 chr6B_17405496 chr6B 17405496 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 17395374 17405568 10195 2 0.0196174595389897 RFvsST 111809 720561207 720449399 no 112.366708311793 TraesCS6B01G028800 chr6B_17397027 chr6B 17397027 C C T T 4 missense_variant MODERATE transcript unique_Triplet 17395374 17405568 10195 2 0.0196174595389897 RFvsST 111809 720561207 720449399 no 112.366708311793 TraesCS6B01G028900 chr6B_17417662 chr6B 17417662 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17414443 17416474 2032 2 0.0984251968503937 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G028900 chr6B_17417643 chr6B 17417643 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 17414443 17416474 2032 2 0.0984251968503937 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G029000 chr6B_17419205 chr6B 17419205 T T C C 4 synonymous_variant LOW transcript unique_Triplet 17417704 17420175 2472 2 0.0809061488673139 RFvsST 111809 720561207 720449399 no 102.331129117399 TraesCS6B01G029000 chr6B_17419202 chr6B 17419202 A A G G 4 synonymous_variant LOW transcript unique_Triplet 17417704 17420175 2472 2 0.0809061488673139 RFvsST 111809 720561207 720449399 no 102.331129117399 TraesCS6B01G034900 chr6B_20879760 chr6B 20879760 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 20875625 20876069 445 3 0.674157303370786 RFvsST 111809 720561207 720449399 no 5.88074505296508 TraesCS6B01G034900 chr6B_20879817 chr6B 20879817 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 20875625 20876069 445 3 0.674157303370786 RFvsST 111809 720561207 720449399 no 5.88074505296508 TraesCS6B01G034900 chr6B_20879892 chr6B 20879892 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 20875625 20876069 445 3 0.674157303370786 RFvsST 111809 720561207 720449399 no 5.88074505296508 TraesCS6B01G035000 chr6B_20878073 chr6B 20878073 T C T C 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878451 chr6B 20878451 T G T G 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878391 chr6B 20878391 T C T C 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878577 chr6B 20878577 A C A C 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878541 chr6B 20878541 T G T G 3 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878098 chr6B 20878098 A G A G 3 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20879130 chr6B 20879130 A G A G 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878304 chr6B 20878304 A G A G 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878074 chr6B 20878074 C C G G 4 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878794 chr6B 20878794 T C T C 3 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20877998 chr6B 20877998 G T G T 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20879159 chr6B 20879159 C A C A 3 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20879072 chr6B 20879072 G A G A 3 missense_variant MODERATE transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20878712 chr6B 20878712 T C T C 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20879639 chr6B 20879639 G A G A 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035000 chr6B_20879085 chr6B 20879085 G T G T 3 synonymous_variant LOW transcript non_Triplet 20877890 20879683 1794 16 0.891861761426979 RFvsST 111809 720561207 720449399 no 171.941723004737 TraesCS6B01G035500 chr6B_20963084 chr6B 20963084 A T A T 3 missense_variant MODERATE transcript non_Triplet 20960021 20963527 3507 1 0.0285143997718848 RFvsST 111809 720561207 720449399 no 442.810284622671 TraesCS6B01G040000 chr6B_24925240 chr6B 24925240 T C T C 3 missense_variant MODERATE transcript non_Triplet 24922918 24938573 15656 1 0.00638732754215636 RFvsST 111809 720561207 720449399 no 222.398254682353 TraesCS6B01G040400 chr6B_25080128 chr6B 25080128 C T C T 3 missense_variant MODERATE transcript non_Triplet 25078809 25093769 14961 4 0.0267361807365818 RFvsST 111809 720561207 720449399 no 215.772006109497 TraesCS6B01G040400 chr6B_25080220 chr6B 25080220 A G A G 3 synonymous_variant LOW transcript non_Triplet 25078809 25093769 14961 4 0.0267361807365818 RFvsST 111809 720561207 720449399 no 215.772006109497 TraesCS6B01G040400 chr6B_25086353 chr6B 25086353 T C T C 3 synonymous_variant LOW transcript non_Triplet 25078809 25093769 14961 4 0.0267361807365818 RFvsST 111809 720561207 720449399 no 215.772006109497 TraesCS6B01G040400 chr6B_25088167 chr6B 25088167 T G T G 3 missense_variant MODERATE transcript non_Triplet 25078809 25093769 14961 4 0.0267361807365818 RFvsST 111809 720561207 720449399 no 215.772006109497 TraesCS6B01G040500 chr6B_25246047 chr6B 25246047 C T C T 3 missense_variant MODERATE transcript non_Triplet 25243172 25246889 3718 2 0.0537923614846692 RFvsST 111809 720561207 720449399 no 19.2749732316164 TraesCS6B01G040500 chr6B_25245863 chr6B 25245863 C T C T 3 synonymous_variant LOW transcript non_Triplet 25243172 25246889 3718 2 0.0537923614846692 RFvsST 111809 720561207 720449399 no 19.2749732316164 TraesCS6B01G040600 chr6B_25251569 chr6B 25251569 A G A G 3 synonymous_variant LOW transcript non_Triplet 25248280 25251772 3493 1 0.0286286859433152 RFvsST 111809 720561207 720449399 no 85.6723135620437 TraesCS6B01G041100 chr6B_25551617 chr6B 25551617 G C G C 3 synonymous_variant LOW transcript unique_Triplet 25550987 25551673 687 5 0.727802037845706 RFvsST 111809 720561207 720449399 no 279.187011027206 TraesCS6B01G041100 chr6B_25551516 chr6B 25551516 T C T C 3 missense_variant MODERATE transcript unique_Triplet 25550987 25551673 687 5 0.727802037845706 RFvsST 111809 720561207 720449399 no 279.187011027206 TraesCS6B01G041100 chr6B_25551623 chr6B 25551623 G C G C 3 synonymous_variant LOW transcript unique_Triplet 25550987 25551673 687 5 0.727802037845706 RFvsST 111809 720561207 720449399 no 279.187011027206 TraesCS6B01G041100 chr6B_25551539 chr6B 25551539 G C G C 3 synonymous_variant LOW transcript unique_Triplet 25550987 25551673 687 5 0.727802037845706 RFvsST 111809 720561207 720449399 no 279.187011027206 TraesCS6B01G041100 chr6B_25551467 chr6B 25551467 C G C G 3 synonymous_variant LOW transcript unique_Triplet 25550987 25551673 687 5 0.727802037845706 RFvsST 111809 720561207 720449399 no 279.187011027206 TraesCS6B01G041200 chr6B_25556978 chr6B 25556978 G A G A 3 missense_variant MODERATE transcript unique_Triplet 25554588 25558190 3603 2 0.0555092978073827 RFvsST 111809 720561207 720449399 no 517.441554837721 TraesCS6B01G041200 chr6B_25555117 chr6B 25555117 T T C C 4 missense_variant MODERATE transcript unique_Triplet 25554588 25558190 3603 2 0.0555092978073827 RFvsST 111809 720561207 720449399 no 517.441554837721 TraesCS6B01G041600 chr6B_25596783 chr6B 25596783 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 25598941 25600152 1212 1 0.0825082508250825 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G045800 chr6B_27329947 chr6B 27329947 T T C C 4 synonymous_variant LOW transcript unique_Triplet 27328905 27335900 6996 2 0.028587764436821 RFvsST 111809 720561207 720449399 no 122.599818920552 TraesCS6B01G045800 chr6B_27332973 chr6B 27332973 A A G G 4 missense_variant MODERATE transcript unique_Triplet 27328905 27335900 6996 2 0.028587764436821 RFvsST 111809 720561207 720449399 no 122.599818920552 TraesCS6B01G047300 chr6B_27947082 chr6B 27947082 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 27941593 27944904 3312 1 0.0301932367149758 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G047400 chr6B_27946591 chr6B 27946591 G G A A 4 missense_variant MODERATE transcript unique_Triplet 27946313 27947231 919 3 0.326441784548422 RFvsST 111809 720561207 720449399 no 28.3383470736224 TraesCS6B01G047400 chr6B_27946632 chr6B 27946632 G G A A 4 synonymous_variant LOW transcript unique_Triplet 27946313 27947231 919 3 0.326441784548422 RFvsST 111809 720561207 720449399 no 28.3383470736224 TraesCS6B01G047400 chr6B_27946964 chr6B 27946964 G G C C 4 missense_variant MODERATE transcript unique_Triplet 27946313 27947231 919 3 0.326441784548422 RFvsST 111809 720561207 720449399 no 28.3383470736224 TraesCS6B01G050200 chr6B_29849619 chr6B 29849619 C C G G 4 missense_variant MODERATE transcript unique_Triplet 29849260 29851504 2245 2 0.089086859688196 RFvsST 111809 720561207 720449399 no 150.479429192363 TraesCS6B01G050200 chr6B_29849428 chr6B 29849428 G G A A 4 synonymous_variant LOW transcript unique_Triplet 29849260 29851504 2245 2 0.089086859688196 RFvsST 111809 720561207 720449399 no 150.479429192363 TraesCS6B01G050600 chr6B_30035500 chr6B 30035500 C C T T 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 30035398 30038539 3142 5 0.159134309357097 RFvsST 111809 720561207 720449399 no 8.23276760578241 TraesCS6B01G050600 chr6B_30035627 chr6B 30035627 G G C C 4 missense_variant MODERATE transcript unique_Triplet 30035398 30038539 3142 5 0.159134309357097 RFvsST 111809 720561207 720449399 no 8.23276760578241 TraesCS6B01G050600 chr6B_30035607 chr6B 30035607 C C T T 4 synonymous_variant LOW transcript unique_Triplet 30035398 30038539 3142 5 0.159134309357097 RFvsST 111809 720561207 720449399 no 8.23276760578241 TraesCS6B01G050600 chr6B_30035814 chr6B 30035814 C C T T 4 synonymous_variant LOW transcript unique_Triplet 30035398 30038539 3142 5 0.159134309357097 RFvsST 111809 720561207 720449399 no 8.23276760578241 TraesCS6B01G050600 chr6B_30036800 chr6B 30036800 A A G G 4 synonymous_variant LOW transcript unique_Triplet 30035398 30038539 3142 5 0.159134309357097 RFvsST 111809 720561207 720449399 no 8.23276760578241 TraesCS6B01G050700 chr6B_30147276 chr6B 30147276 G G A A 4 synonymous_variant LOW transcript unique_Triplet 30147267 30151105 3839 1 0.026048450117218 RFvsST 111809 720561207 720449399 no 23.8513745899854 TraesCS6B01G050900 chr6B_30280836 chr6B 30280836 C C T T 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277912 chr6B 30277912 C G C G 3 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277503 chr6B 30277503 A A G G 4 synonymous_variant LOW transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30279083 chr6B 30279083 G G A A 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277398 chr6B 30277398 C C A A 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277569 chr6B 30277569 A A G G 4 synonymous_variant LOW transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277627 chr6B 30277627 G G A A 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30280161 chr6B 30280161 A A C C 4 intron_variant MODIFIER transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30280266 chr6B 30280266 G G C C 4 intron_variant MODIFIER transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277652 chr6B 30277652 G G T T 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30277507 chr6B 30277507 T T C C 4 missense_variant MODERATE transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30281514 chr6B 30281514 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G050900 chr6B_30280085 chr6B 30280085 C C T T 4 intron_variant MODIFIER transcript non_Triplet 30276840 30280933 4094 13 0.317537860283341 RFvsST 111809 720561207 720449399 no 959.808146111187 TraesCS6B01G052200 chr6B_31518243 chr6B 31518243 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 31513097 31514887 1791 1 0.0558347292015634 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G052900 chr6B_32324448 chr6B 32324448 T C T C 3 synonymous_variant LOW transcript unique_Triplet 32323995 32325252 1258 1 0.0794912559618442 RFvsST 111809 720561207 720449399 no 185.302077693268 TraesCS6B01G054100 chr6B_34219469 chr6B 34219469 C C T T 4 missense_variant MODERATE transcript unique_Triplet 34219438 34220670 1233 1 0.08110300081103 RFvsST 111809 720561207 720449399 no 126.460316348195 TraesCS6B01G056200 chr6B_36226670 chr6B 36226670 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 36226675 36232326 5652 4 0.0707714083510262 RFvsST 111809 720561207 720449399 no 197.461696786673 TraesCS6B01G056200 chr6B_36226955 chr6B 36226955 C T C T 3 missense_variant MODERATE transcript non_Triplet 36226675 36232326 5652 4 0.0707714083510262 RFvsST 111809 720561207 720449399 no 197.461696786673 TraesCS6B01G056200 chr6B_36226666 chr6B 36226666 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 36226675 36232326 5652 4 0.0707714083510262 RFvsST 111809 720561207 720449399 no 197.461696786673 TraesCS6B01G056200 chr6B_36226505 chr6B 36226505 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 36226675 36232326 5652 4 0.0707714083510262 RFvsST 111809 720561207 720449399 no 197.461696786673 TraesCS6B01G056800 chr6B_37251447 chr6B 37251447 C T C T 3 synonymous_variant LOW transcript unique_Triplet 37251092 37252918 1827 1 0.0547345374931582 RFvsST 111809 720561207 720449399 no 188.054028183395 TraesCS6B01G056900 chr6B_37313275 chr6B 37313275 G A G A,C 3 synonymous_variant LOW transcript unique_Triplet 37312015 37313811 1797 2 0.111296605453534 RFvsST 111809 720561207 720449399 no 244.649031862406 TraesCS6B01G056900 chr6B_37312150 chr6B 37312150 C G C G 3 synonymous_variant LOW transcript unique_Triplet 37312015 37313811 1797 2 0.111296605453534 RFvsST 111809 720561207 720449399 no 244.649031862406 TraesCS6B01G058300 chr6B_38765046 chr6B 38765046 G C G C 3 synonymous_variant LOW transcript non_Triplet 38763526 38767358 3833 1 0.026089225150013 RFvsST 111809 720561207 720449399 no 2961.73946611151 TraesCS6B01G058400 chr6B_38879213 chr6B 38879213 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 38877742 38878286 545 1 0.18348623853211 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G058500 chr6B_38883175 chr6B 38883175 G C G C 3 synonymous_variant LOW transcript unique_Triplet 38879353 38883288 3936 3 0.0762195121951219 RFvsST 111809 720561207 720449399 no 33.5374213015146 TraesCS6B01G058500 chr6B_38879542 chr6B 38879542 G A G A 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 38879353 38883288 3936 3 0.0762195121951219 RFvsST 111809 720561207 720449399 no 33.5374213015146 TraesCS6B01G058500 chr6B_38880425 chr6B 38880425 C T C T 3 missense_variant MODERATE transcript unique_Triplet 38879353 38883288 3936 3 0.0762195121951219 RFvsST 111809 720561207 720449399 no 33.5374213015146 TraesCS6B01G059200 chr6B_39180683 chr6B 39180683 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 39180706 39181182 477 3 0.628930817610063 RFvsST 111809 720561207 720449399 no 86.167278645379 TraesCS6B01G059200 chr6B_39180911 chr6B 39180911 G A G A 3 missense_variant MODERATE transcript unique_Triplet 39180706 39181182 477 3 0.628930817610063 RFvsST 111809 720561207 720449399 no 86.167278645379 TraesCS6B01G059200 chr6B_39180607 chr6B 39180607 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 39180706 39181182 477 3 0.628930817610063 RFvsST 111809 720561207 720449399 no 86.167278645379 TraesCS6B01G059400 chr6B_39198391 chr6B 39198391 T A T A 3 synonymous_variant LOW transcript non_Triplet 39197817 39199866 2050 5 0.24390243902439 RFvsST 111809 720561207 720449399 no 54.8076017627741 TraesCS6B01G059400 chr6B_39198718 chr6B 39198718 C T C T 3 synonymous_variant LOW transcript non_Triplet 39197817 39199866 2050 5 0.24390243902439 RFvsST 111809 720561207 720449399 no 54.8076017627741 TraesCS6B01G059400 chr6B_39198449 chr6B 39198449 A G A G 3 missense_variant MODERATE transcript non_Triplet 39197817 39199866 2050 5 0.24390243902439 RFvsST 111809 720561207 720449399 no 54.8076017627741 TraesCS6B01G059400 chr6B_39198553 chr6B 39198553 T C T C 3 synonymous_variant LOW transcript non_Triplet 39197817 39199866 2050 5 0.24390243902439 RFvsST 111809 720561207 720449399 no 54.8076017627741 TraesCS6B01G059400 chr6B_39198701 chr6B 39198701 C T C T 3 missense_variant MODERATE transcript non_Triplet 39197817 39199866 2050 5 0.24390243902439 RFvsST 111809 720561207 720449399 no 54.8076017627741 TraesCS6B01G060000 chr6B_39676032 chr6B 39676032 A G A G 3 missense_variant MODERATE transcript non_Triplet 39675712 39677500 1789 1 0.0558971492453885 RFvsST 111809 720561207 720449399 no 49.0558284312632 TraesCS6B01G060200 chr6B_39759531 chr6B 39759531 T C T C 3 missense_variant MODERATE transcript unique_Triplet 39759465 39765392 5928 2 0.0337381916329285 RFvsST 111809 720561207 720449399 no 187.895573731579 TraesCS6B01G060200 chr6B_39765508 chr6B 39765508 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 39759465 39765392 5928 2 0.0337381916329285 RFvsST 111809 720561207 720449399 no 187.895573731579 TraesCS6B01G060700 chr6B_40283285 chr6B 40283285 A G A G 3 synonymous_variant LOW transcript unique_Triplet 40282561 40285047 2487 2 0.0804181745074387 RFvsST 111809 720561207 720449399 no 303.449180573631 TraesCS6B01G060700 chr6B_40284968 chr6B 40284968 T C T C 3 missense_variant MODERATE transcript unique_Triplet 40282561 40285047 2487 2 0.0804181745074387 RFvsST 111809 720561207 720449399 no 303.449180573631 TraesCS6B01G060800 chr6B_40433314 chr6B 40433314 G A G A 3 missense_variant MODERATE transcript unique_Triplet 40432899 40433330 432 3 0.694444444444444 RFvsST 111809 720561207 720449399 no 48.1061752941538 TraesCS6B01G060800 chr6B_40432977 chr6B 40432977 A G A G 3 synonymous_variant LOW transcript unique_Triplet 40432899 40433330 432 3 0.694444444444444 RFvsST 111809 720561207 720449399 no 48.1061752941538 TraesCS6B01G060800 chr6B_40433013 chr6B 40433013 A G A G 3 synonymous_variant LOW transcript unique_Triplet 40432899 40433330 432 3 0.694444444444444 RFvsST 111809 720561207 720449399 no 48.1061752941538 TraesCS6B01G061000 chr6B_40455471 chr6B 40455471 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 40449889 40453113 3225 3 0.0930232558139535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G061000 chr6B_40455712 chr6B 40455712 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 40449889 40453113 3225 3 0.0930232558139535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G061000 chr6B_40455631 chr6B 40455631 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 40449889 40453113 3225 3 0.0930232558139535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G061900 chr6B_41435341 chr6B 41435341 G A G A 3 stop_gained HIGH transcript unique_Triplet 41435196 41437033 1838 1 0.0544069640914037 RFvsST 111809 720561207 720449399 no 360.396206560823 TraesCS6B01G062400 chr6B_41705712 chr6B 41705712 T C T C 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705353 chr6B 41705353 A G A G 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41702633 chr6B 41702633 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706044 chr6B 41706044 T G T G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705160 chr6B 41705160 A G A G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41707106 chr6B 41707106 G T G T 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41707080 chr6B 41707080 C T C T 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41704026 chr6B 41704026 A G A G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706669 chr6B 41706669 T C T C 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41704918 chr6B 41704918 A G A G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706860 chr6B 41706860 A G A G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706674 chr6B 41706674 C T C T 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705775 chr6B 41705775 A G A G 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41707257 chr6B 41707257 C T C T 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706416 chr6B 41706416 T C T C 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41704876 chr6B 41704876 C A C A,G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705939 chr6B 41705939 T A T A 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705187 chr6B 41705187 C G C G 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705764 chr6B 41705764 G T G T 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706065 chr6B 41706065 T C T C 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41705367 chr6B 41705367 T A T A 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41704033 chr6B 41704033 A G A G 3 missense_variant MODERATE transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G062400 chr6B_41706247 chr6B 41706247 A T A T 3 synonymous_variant LOW transcript unique_Triplet 41703316 41707311 3996 23 0.575575575575576 RFvsST 111809 720561207 720449399 no 73.8231740952505 TraesCS6B01G063000 chr6B_41976233 chr6B 41976233 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 41972337 41975954 3618 2 0.0552791597567717 RFvsST 111809 720561207 720449399 no 142.129689053051 TraesCS6B01G063000 chr6B_41975900 chr6B 41975900 C T C T 3 synonymous_variant LOW transcript unique_Triplet 41972337 41975954 3618 2 0.0552791597567717 RFvsST 111809 720561207 720449399 no 142.129689053051 TraesCS6B01G063100 chr6B_41974055 chr6B 41974055 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 41977522 41977785 264 1 0.378787878787879 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G063800 chr6B_42318277 chr6B 42318277 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318146 chr6B 42318146 T A T A 3 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318739 chr6B 42318739 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318302 chr6B 42318302 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318119 chr6B 42318119 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318774 chr6B 42318774 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318374 chr6B 42318374 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G063800 chr6B_42318851 chr6B 42318851 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 42317588 42318870 1283 8 0.623538581449727 RFvsST 111809 720561207 720449399 no 158.823030848359 TraesCS6B01G064200 chr6B_42497488 chr6B 42497488 C G C G 3 synonymous_variant LOW transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42498656 chr6B 42498656 G A G A 3 synonymous_variant LOW transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42498000 chr6B 42498000 C A C A 3 synonymous_variant LOW transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42497422 chr6B 42497422 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42500537 chr6B 42500537 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42498017 chr6B 42498017 T C T C 3 synonymous_variant LOW transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42497448 chr6B 42497448 A G A G 3 missense_variant MODERATE transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064200 chr6B_42498005 chr6B 42498005 A G A G 3 synonymous_variant LOW transcript unique_Triplet 42497426 42500365 2940 8 0.272108843537415 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G064300 chr6B_42510461 chr6B 42510461 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 42510567 42512153 1587 1 0.0630119722747322 RFvsST 111809 720561207 720449399 no 204.380426499267 TraesCS6B01G072400 chr6B_48558088 chr6B 48558088 C C T T 4 missense_variant MODERATE transcript unique_Triplet 48556971 48564579 7609 1 0.0131423314495992 RFvsST 111809 720561207 720449399 no 127.256680601415 TraesCS6B01G096400 chr6B_72384588 chr6B 72384588 C A C A 3 missense_variant MODERATE transcript unique_Triplet 72381307 72385798 4492 2 0.0445235975066785 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G096400 chr6B_72384952 chr6B 72384952 A G A G 3 synonymous_variant LOW transcript unique_Triplet 72381307 72385798 4492 2 0.0445235975066785 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G097400 chr6B_75029169 chr6B 75029169 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75026460 75028400 1941 3 0.154559505409583 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G097400 chr6B_75029293 chr6B 75029293 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75026460 75028400 1941 3 0.154559505409583 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G097400 chr6B_75029242 chr6B 75029242 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 75026460 75028400 1941 3 0.154559505409583 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G097500 chr6B_75035700 chr6B 75035700 G C G C 3 synonymous_variant LOW transcript unique_Triplet 75029370 75035714 6345 2 0.0315208825847124 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G097500 chr6B_75035643 chr6B 75035643 G A G A 3 synonymous_variant LOW transcript unique_Triplet 75029370 75035714 6345 2 0.0315208825847124 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G098300 chr6B_75918528 chr6B 75918528 A G A G 3 synonymous_variant LOW transcript unique_Triplet 75915293 75918621 3329 1 0.0300390507659958 RFvsST 111809 720561207 720449399 no 666.871400408648 TraesCS6B01G099200 chr6B_76860554 chr6B 76860554 G A G A 3 synonymous_variant LOW transcript non_Triplet 76856459 76861309 4851 1 0.020614306328592 RFvsST 111809 720561207 720449399 no 26.925300224902 TraesCS6B01G099300 chr6B_77011676 chr6B 77011676 A C A C 3 synonymous_variant LOW transcript non_Triplet 77010389 77012508 2120 4 0.188679245283019 RFvsST 111809 720561207 720449399 no 269.653453701681 TraesCS6B01G099300 chr6B_77010443 chr6B 77010443 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 77010389 77012508 2120 4 0.188679245283019 RFvsST 111809 720561207 720449399 no 269.653453701681 TraesCS6B01G099300 chr6B_77011392 chr6B 77011392 G A G A 3 missense_variant MODERATE transcript non_Triplet 77010389 77012508 2120 4 0.188679245283019 RFvsST 111809 720561207 720449399 no 269.653453701681 TraesCS6B01G099300 chr6B_77011788 chr6B 77011788 C A C A 3 missense_variant MODERATE transcript non_Triplet 77010389 77012508 2120 4 0.188679245283019 RFvsST 111809 720561207 720449399 no 269.653453701681 TraesCS6B01G099900 chr6B_77779775 chr6B 77779775 C T C T 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77779714 chr6B 77779714 G A G A 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77779756 chr6B 77779756 T C T C 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77791182 chr6B 77791182 T C T C 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77791512 chr6B 77791512 A G A G 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77783246 chr6B 77783246 T C T C 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77791319 chr6B 77791319 T C T C 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77780562 chr6B 77780562 T C T C 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77791628 chr6B 77791628 C G C G 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77791136 chr6B 77791136 G T G T 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77780490 chr6B 77780490 C T C T 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77780352 chr6B 77780352 T C T C 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77780325 chr6B 77780325 G A G A 3 synonymous_variant LOW transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77781542 chr6B 77781542 C A C A 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77781336 chr6B 77781336 T C T C 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77782286 chr6B 77782286 T G T G 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G099900 chr6B_77782425 chr6B 77782425 T A T A 3 missense_variant MODERATE transcript non_Triplet 77772716 77793599 20884 17 0.0814020302624018 RFvsST 111809 720561207 720449399 no 894.463767960184 TraesCS6B01G100000 chr6B_77775200 chr6B 77775200 T C T C 3 synonymous_variant LOW transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77776453 chr6B 77776453 T C T C 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77776714 chr6B 77776714 C T C T 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77773788 chr6B 77773788 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77778275 chr6B 77778275 A G A G 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77775216 chr6B 77775216 T G T G 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77774770 chr6B 77774770 G A G A 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77778744 chr6B 77778744 T C T C 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77774772 chr6B 77774772 T C T C 3 synonymous_variant LOW transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77773633 chr6B 77773633 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77776560 chr6B 77776560 A G A G 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77778479 chr6B 77778479 A C A C 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77773740 chr6B 77773740 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G100000 chr6B_77776929 chr6B 77776929 A C A C 3 missense_variant MODERATE transcript non_Triplet 77774013 77778789 4777 14 0.293070965040821 RFvsST 111809 720561207 720449399 no 468.012855005117 TraesCS6B01G103200 chr6B_81025619 chr6B 81025619 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 81025697 81026839 1143 2 0.174978127734033 RFvsST 111809 720561207 720449399 no 75.2906000320231 TraesCS6B01G103200 chr6B_81026500 chr6B 81026500 G C G C 3 missense_variant MODERATE transcript non_Triplet 81025697 81026839 1143 2 0.174978127734033 RFvsST 111809 720561207 720449399 no 75.2906000320231 TraesCS6B01G104300 chr6B_83196495 chr6B 83196495 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 83195353 83196473 1121 1 0.0892060660124889 RFvsST 111809 720561207 720449399 no 201.546951486004 TraesCS6B01G105100 chr6B_84612819 chr6B 84612819 T C T C 3 synonymous_variant LOW transcript non_Triplet 84611088 84614024 2937 3 0.102145045965271 RFvsST 111809 720561207 720449399 no 17.7242172598873 TraesCS6B01G105100 chr6B_84614233 chr6B 84614233 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 84611088 84614024 2937 3 0.102145045965271 RFvsST 111809 720561207 720449399 no 17.7242172598873 TraesCS6B01G105100 chr6B_84612770 chr6B 84612770 T C T C 3 missense_variant MODERATE transcript non_Triplet 84611088 84614024 2937 3 0.102145045965271 RFvsST 111809 720561207 720449399 no 17.7242172598873 TraesCS6B01G105900 chr6B_85790796 chr6B 85790796 C T C T 3 synonymous_variant LOW transcript unique_Triplet 85787634 85791680 4047 1 0.0247096614776378 RFvsST 111809 720561207 720449399 no 210.133045453181 TraesCS6B01G106500 chr6B_87324110 chr6B 87324110 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 87324609 87327677 3069 4 0.130335614206582 RFvsST 111809 720561207 720449399 no 85.5503862893834 TraesCS6B01G106500 chr6B_87324041 chr6B 87324041 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 87324609 87327677 3069 4 0.130335614206582 RFvsST 111809 720561207 720449399 no 85.5503862893834 TraesCS6B01G106500 chr6B_87323099 chr6B 87323099 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 87324609 87327677 3069 4 0.130335614206582 RFvsST 111809 720561207 720449399 no 85.5503862893834 TraesCS6B01G106500 chr6B_87323126 chr6B 87323126 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 87324609 87327677 3069 4 0.130335614206582 RFvsST 111809 720561207 720449399 no 85.5503862893834 TraesCS6B01G106600 chr6B_87325269 chr6B 87325269 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 87329997 87330734 738 1 0.13550135501355 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G109400 chr6B_90279029 chr6B 90279029 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 90277740 90281153 3414 2 0.0585823081429408 RFvsST 111809 720561207 720449399 no 1199.52288029419 TraesCS6B01G109400 chr6B_90279054 chr6B 90279054 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 90277740 90281153 3414 2 0.0585823081429408 RFvsST 111809 720561207 720449399 no 1199.52288029419 TraesCS6B01G109700 chr6B_91207470 chr6B 91207470 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 91203479 91204594 1116 1 0.0896057347670251 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G109800 chr6B_91207973 chr6B 91207973 T C T C 3 synonymous_variant LOW transcript non_Triplet 91207484 91214439 6956 5 0.0718803910293272 RFvsST 111809 720561207 720449399 no 210.980557723681 TraesCS6B01G109800 chr6B_91208254 chr6B 91208254 C T C T 3 missense_variant MODERATE transcript non_Triplet 91207484 91214439 6956 5 0.0718803910293272 RFvsST 111809 720561207 720449399 no 210.980557723681 TraesCS6B01G109800 chr6B_91208127 chr6B 91208127 A G A G 3 missense_variant MODERATE transcript non_Triplet 91207484 91214439 6956 5 0.0718803910293272 RFvsST 111809 720561207 720449399 no 210.980557723681 TraesCS6B01G109800 chr6B_91207907 chr6B 91207907 C A C A 3 synonymous_variant LOW transcript non_Triplet 91207484 91214439 6956 5 0.0718803910293272 RFvsST 111809 720561207 720449399 no 210.980557723681 TraesCS6B01G109800 chr6B_91213987 chr6B 91213987 A G A G 3 synonymous_variant LOW transcript non_Triplet 91207484 91214439 6956 5 0.0718803910293272 RFvsST 111809 720561207 720449399 no 210.980557723681 TraesCS6B01G110100 chr6B_92475316 chr6B 92475316 A A G G 4 missense_variant MODERATE transcript non_Triplet 92472649 92476557 3909 1 0.0255819902788437 RFvsST 111809 720561207 720449399 no 31.134004715236 TraesCS6B01G111200 chr6B_93417564 chr6B 93417564 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 93413361 93416931 3571 1 0.0280033604032484 RFvsST 111809 720561207 720449399 no 49.7913826085064 TraesCS6B01G111800 chr6B_93562245 chr6B 93562245 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 93562320 93569684 7365 1 0.0135777325186694 RFvsST 111809 720561207 720449399 no 53.5048914160018 TraesCS6B01G112200 chr6B_93992600 chr6B 93992600 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 93987636 93988247 612 2 0.326797385620915 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G112200 chr6B_93988164 chr6B 93988164 A G A G 3 missense_variant MODERATE transcript non_Triplet 93987636 93988247 612 2 0.326797385620915 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G112400 chr6B_94000089 chr6B 94000089 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 93997731 94000064 2334 1 0.0428449014567267 RFvsST 111809 720561207 720449399 no 60.5372708049911 TraesCS6B01G113700 chr6B_96343937 chr6B 96343937 G T G T 3 synonymous_variant LOW transcript unique_Triplet 96341172 96345181 4010 2 0.0498753117206982 RFvsST 111809 720561207 720449399 no 137.465495087411 TraesCS6B01G113700 chr6B_96345052 chr6B 96345052 A T A T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 96341172 96345181 4010 2 0.0498753117206982 RFvsST 111809 720561207 720449399 no 137.465495087411 TraesCS6B01G113900 chr6B_96404493 chr6B 96404493 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 96399831 96404577 4747 4 0.0842637455234885 RFvsST 111809 720561207 720449399 no 210.395590211269 TraesCS6B01G113900 chr6B_96399951 chr6B 96399951 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 96399831 96404577 4747 4 0.0842637455234885 RFvsST 111809 720561207 720449399 no 210.395590211269 TraesCS6B01G113900 chr6B_96399935 chr6B 96399935 G T G T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 96399831 96404577 4747 4 0.0842637455234885 RFvsST 111809 720561207 720449399 no 210.395590211269 TraesCS6B01G113900 chr6B_96404534 chr6B 96404534 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 96399831 96404577 4747 4 0.0842637455234885 RFvsST 111809 720561207 720449399 no 210.395590211269 TraesCS6B01G114700 chr6B_97819008 chr6B 97819008 G T G T 3 missense_variant MODERATE transcript non_Triplet 97816249 97819115 2867 2 0.069759330310429 RFvsST 111809 720561207 720449399 no 431.131129451638 TraesCS6B01G114700 chr6B_97822449 chr6B 97822449 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 97816249 97819115 2867 2 0.069759330310429 RFvsST 111809 720561207 720449399 no 431.131129451638 TraesCS6B01G114800 chr6B_98853270 chr6B 98853270 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 98853332 98856607 3276 1 0.0305250305250305 RFvsST 111809 720561207 720449399 no 312.164994047585 TraesCS6B01G115000 chr6B_98984002 chr6B 98984002 C T C T 3 missense_variant MODERATE transcript non_Triplet 98983896 98987304 3409 2 0.0586682311528307 RFvsST 111809 720561207 720449399 no 76.1069428691043 TraesCS6B01G115000 chr6B_98987251 chr6B 98987251 G T G T 3 missense_variant MODERATE transcript non_Triplet 98983896 98987304 3409 2 0.0586682311528307 RFvsST 111809 720561207 720449399 no 76.1069428691043 TraesCS6B01G115100 chr6B_98991510 chr6B 98991510 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 98992452 98992979 528 3 0.568181818181818 RFvsST 111809 720561207 720449399 no 850.277564272999 TraesCS6B01G115100 chr6B_98991290 chr6B 98991290 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 98992452 98992979 528 3 0.568181818181818 RFvsST 111809 720561207 720449399 no 850.277564272999 TraesCS6B01G115100 chr6B_98992951 chr6B 98992951 G A G A 3 missense_variant MODERATE transcript non_Triplet 98992452 98992979 528 3 0.568181818181818 RFvsST 111809 720561207 720449399 no 850.277564272999 TraesCS6B01G115200 chr6B_100291270 chr6B 100291270 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 100288571 100290842 2272 3 0.132042253521127 RFvsST 111809 720561207 720449399 no 557.799510082971 TraesCS6B01G115200 chr6B_100291191 chr6B 100291191 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 100288571 100290842 2272 3 0.132042253521127 RFvsST 111809 720561207 720449399 no 557.799510082971 TraesCS6B01G115200 chr6B_100288831 chr6B 100288831 T G T G 3 synonymous_variant LOW transcript non_Triplet 100288571 100290842 2272 3 0.132042253521127 RFvsST 111809 720561207 720449399 no 557.799510082971 TraesCS6B01G115900 chr6B_101222836 chr6B 101222836 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 101222151 101222789 639 1 0.156494522691706 RFvsST 111809 720561207 720449399 no 12434.7403446637 TraesCS6B01G116200 chr6B_101735512 chr6B 101735512 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 101731455 101735467 4013 1 0.024919013207077 RFvsST 111809 720561207 720449399 no 511.592607997942 TraesCS6B01G116400 chr6B_101921986 chr6B 101921986 C C T T 4 missense_variant MODERATE transcript non_Triplet 101917131 101922548 5418 1 0.0184569952011812 RFvsST 111809 720561207 720449399 no 12.9630801537258 TraesCS6B01G117000 chr6B_106473426 chr6B 106473426 G T G T 3 missense_variant MODERATE transcript non_Triplet 106473079 106475702 2624 2 0.0762195121951219 RFvsST 111809 720561207 720449399 no 95.9196855280167 TraesCS6B01G117000 chr6B_106475640 chr6B 106475640 C T C T 3 synonymous_variant LOW transcript non_Triplet 106473079 106475702 2624 2 0.0762195121951219 RFvsST 111809 720561207 720449399 no 95.9196855280167 TraesCS6B01G117100 chr6B_106512665 chr6B 106512665 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 106506094 106512307 6214 4 0.0643707756678468 RFvsST 111809 720561207 720449399 no 185.459863334908 TraesCS6B01G117100 chr6B_106513139 chr6B 106513139 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 106506094 106512307 6214 4 0.0643707756678468 RFvsST 111809 720561207 720449399 no 185.459863334908 TraesCS6B01G117100 chr6B_106512121 chr6B 106512121 C G C G 3 synonymous_variant LOW transcript non_Triplet 106506094 106512307 6214 4 0.0643707756678468 RFvsST 111809 720561207 720449399 no 185.459863334908 TraesCS6B01G117100 chr6B_106512008 chr6B 106512008 A C A C 3 missense_variant MODERATE transcript non_Triplet 106506094 106512307 6214 4 0.0643707756678468 RFvsST 111809 720561207 720449399 no 185.459863334908 TraesCS6B01G117300 chr6B_107078021 chr6B 107078021 G G C C 4 synonymous_variant LOW transcript non_Triplet 107077845 107078171 327 1 0.305810397553517 RFvsST 111809 720561207 720449399 no 913.280851009446 TraesCS6B01G117400 chr6B_107774203 chr6B 107774203 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 107771278 107773937 2660 2 0.075187969924812 RFvsST 111809 720561207 720449399 no 93.3026506238615 TraesCS6B01G117400 chr6B_107773849 chr6B 107773849 G G A A 4 missense_variant MODERATE transcript non_Triplet 107771278 107773937 2660 2 0.075187969924812 RFvsST 111809 720561207 720449399 no 93.3026506238615 TraesCS6B01G118100 chr6B_112905808 chr6B 112905808 G G A A 4 synonymous_variant LOW transcript non_Triplet 112905559 112909575 4017 4 0.0995767986059248 RFvsST 111809 720561207 720449399 no 50.1073742199077 TraesCS6B01G118100 chr6B_112906851 chr6B 112906851 T C T C 3 missense_variant MODERATE transcript non_Triplet 112905559 112909575 4017 4 0.0995767986059248 RFvsST 111809 720561207 720449399 no 50.1073742199077 TraesCS6B01G118100 chr6B_112909938 chr6B 112909938 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 112905559 112909575 4017 4 0.0995767986059248 RFvsST 111809 720561207 720449399 no 50.1073742199077 TraesCS6B01G118100 chr6B_112909434 chr6B 112909434 A A C C 4 missense_variant MODERATE transcript non_Triplet 112905559 112909575 4017 4 0.0995767986059248 RFvsST 111809 720561207 720449399 no 50.1073742199077 TraesCS6B01G119800 chr6B_114372526 chr6B 114372526 G T A T,A 6 upstream_gene_variant MODIFIER transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G119800 chr6B_114372471 chr6B 114372471 C C T T 4 synonymous_variant LOW transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G119800 chr6B_114367246 chr6B 114367246 C C T T 4 missense_variant MODERATE transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G119800 chr6B_114367317 chr6B 114367317 A A T T 4 missense_variant MODERATE transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G119800 chr6B_114367132 chr6B 114367132 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G119800 chr6B_114371253 chr6B 114371253 T T C C 4 synonymous_variant LOW transcript unique_Triplet 114367181 114372482 5302 6 0.1131648434553 RFvsST 111809 720561207 720449399 no 124.687309267503 TraesCS6B01G120700 chr6B_115701530 chr6B 115701530 G A G A 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115701399 chr6B 115701399 C A C A 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115699970 chr6B 115699970 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700064 chr6B 115700064 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700527 chr6B 115700527 C T C T 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700119 chr6B 115700119 G A G A 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115703000 chr6B 115703000 C G C G 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700416 chr6B 115700416 G A G A 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700638 chr6B 115700638 G A G A 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700226 chr6B 115700226 T G T G 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700997 chr6B 115700997 A C A C 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115702234 chr6B 115702234 A G A G 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700791 chr6B 115700791 C T C T 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700475 chr6B 115700475 T C T C 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700709 chr6B 115700709 G A G A 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700347 chr6B 115700347 T C T C 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700686 chr6B 115700686 T C T C 3 synonymous_variant LOW transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700655 chr6B 115700655 T C T C 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120700 chr6B_115700939 chr6B 115700939 G C G C 3 missense_variant MODERATE transcript unique_Triplet 115699764 115704241 4478 19 0.424296560964716 RFvsST 111809 720561207 720449399 no 297.428417816118 TraesCS6B01G120900 chr6B_115945803 chr6B 115945803 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 115945847 115949574 3728 1 0.0268240343347639 RFvsST 111809 720561207 720449399 no 131.077246361645 TraesCS6B01G121900 chr6B_116607212 chr6B 116607212 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 116602993 116607207 4215 5 0.118623962040332 RFvsST 111809 720561207 720449399 no 60.5512961940069 TraesCS6B01G121900 chr6B_116607095 chr6B 116607095 G G T T 4 missense_variant MODERATE transcript unique_Triplet 116602993 116607207 4215 5 0.118623962040332 RFvsST 111809 720561207 720449399 no 60.5512961940069 TraesCS6B01G121900 chr6B_116607492 chr6B 116607492 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 116602993 116607207 4215 5 0.118623962040332 RFvsST 111809 720561207 720449399 no 60.5512961940069 TraesCS6B01G121900 chr6B_116603334 chr6B 116603334 C T C T 3 synonymous_variant LOW transcript unique_Triplet 116602993 116607207 4215 5 0.118623962040332 RFvsST 111809 720561207 720449399 no 60.5512961940069 TraesCS6B01G121900 chr6B_116603343 chr6B 116603343 T C T C 3 synonymous_variant LOW transcript unique_Triplet 116602993 116607207 4215 5 0.118623962040332 RFvsST 111809 720561207 720449399 no 60.5512961940069 TraesCS6B01G122200 chr6B_117514588 chr6B 117514588 C C A A 4 synonymous_variant LOW transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117514143 chr6B 117514143 C C A A 4 stop_gained HIGH transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117514587 chr6B 117514587 G G A A 4 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117513546 chr6B 117513546 G G T T 4 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117511937 chr6B 117511937 G T G T 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117503667 chr6B 117503667 A T A T 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117516222 chr6B 117516222 C T C T 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117507174 chr6B 117507174 T C T C 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117507868 chr6B 117507868 T G T G 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117511711 chr6B 117511711 C A C A 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122200 chr6B_117509874 chr6B 117509874 C T C T 3 missense_variant MODERATE transcript unique_Triplet 117501751 117518610 16860 11 0.0652431791221827 RFvsST 111809 720561207 720449399 no 7371.99328318898 TraesCS6B01G122600 chr6B_117782700 chr6B 117782700 G G A A 4 missense_variant MODERATE transcript unique_Triplet 117751189 117807204 56016 2 0.00357040845472722 RFvsST 111809 720561207 720449399 no 671.543035273782 TraesCS6B01G122600 chr6B_117782184 chr6B 117782184 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 117751189 117807204 56016 2 0.00357040845472722 RFvsST 111809 720561207 720449399 no 671.543035273782 TraesCS6B01G124700 chr6B_119848924 chr6B 119848924 T T C C 4 missense_variant MODERATE transcript unique_Triplet 119848790 119849317 528 1 0.189393939393939 RFvsST 111809 720561207 720449399 no 111.615304396372 TraesCS6B01G124800 chr6B_119849646 chr6B 119849646 C C T T 4 synonymous_variant LOW transcript unique_Triplet 119849553 119849678 126 2 1.58730158730159 RFvsST 111809 720561207 720449399 no 40.5877800728442 TraesCS6B01G124800 chr6B_119849622 chr6B 119849622 G G C C 4 synonymous_variant LOW transcript unique_Triplet 119849553 119849678 126 2 1.58730158730159 RFvsST 111809 720561207 720449399 no 40.5877800728442 TraesCS6B01G125000 chr6B_120008300 chr6B 120008300 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 120008494 120013259 4766 1 0.0209819555182543 RFvsST 111809 720561207 720449399 no 200.52728019042 TraesCS6B01G125500 chr6B_120646401 chr6B 120646401 G G T T 4 synonymous_variant LOW transcript unique_Triplet 120644550 120650198 5649 2 0.0354044963710391 RFvsST 111809 720561207 720449399 no 219.986705564628 TraesCS6B01G125500 chr6B_120644564 chr6B 120644564 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 120644550 120650198 5649 2 0.0354044963710391 RFvsST 111809 720561207 720449399 no 219.986705564628 TraesCS6B01G125600 chr6B_120666778 chr6B 120666778 C C T T 4 synonymous_variant LOW transcript non_Triplet 120662746 120667304 4559 5 0.109673173941654 RFvsST 111809 720561207 720449399 no 214.475466143828 TraesCS6B01G125600 chr6B_120666651 chr6B 120666651 G G A A 4 synonymous_variant LOW transcript non_Triplet 120662746 120667304 4559 5 0.109673173941654 RFvsST 111809 720561207 720449399 no 214.475466143828 TraesCS6B01G125600 chr6B_120662363 chr6B 120662363 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 120662746 120667304 4559 5 0.109673173941654 RFvsST 111809 720561207 720449399 no 214.475466143828 TraesCS6B01G125600 chr6B_120666618 chr6B 120666618 A A G G 4 synonymous_variant LOW transcript non_Triplet 120662746 120667304 4559 5 0.109673173941654 RFvsST 111809 720561207 720449399 no 214.475466143828 TraesCS6B01G125600 chr6B_120662436 chr6B 120662436 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 120662746 120667304 4559 5 0.109673173941654 RFvsST 111809 720561207 720449399 no 214.475466143828 TraesCS6B01G125700 chr6B_120667360 chr6B 120667360 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 120665761 120673487 7727 1 0.0129416332341141 RFvsST 111809 720561207 720449399 no 198.602508311939 TraesCS6B01G127100 chr6B_122957204 chr6B 122957204 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 122956332 122957176 845 1 0.118343195266272 RFvsST 111809 720561207 720449399 no 36.5716155197229 TraesCS6B01G129600 chr6B_126136200 chr6B 126136200 C C G G 4 missense_variant MODERATE transcript unique_Triplet 126135599 126142289 6691 3 0.0448363473322373 RFvsST 111809 720561207 720449399 no 123.555456801635 TraesCS6B01G129600 chr6B_126137052 chr6B 126137052 G T G T 3 missense_variant MODERATE transcript unique_Triplet 126135599 126142289 6691 3 0.0448363473322373 RFvsST 111809 720561207 720449399 no 123.555456801635 TraesCS6B01G129600 chr6B_126135946 chr6B 126135946 C C T T 4 missense_variant MODERATE transcript unique_Triplet 126135599 126142289 6691 3 0.0448363473322373 RFvsST 111809 720561207 720449399 no 123.555456801635 TraesCS6B01G134100 chr6B_130967157 chr6B 130967157 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 130963925 130968301 4377 1 0.0228466986520448 RFvsST 111809 720561207 720449399 no 46.1192749047086 TraesCS6B01G134200 chr6B_131221299 chr6B 131221299 T C T C 3 missense_variant MODERATE transcript non_Triplet 131220748 131223380 2633 2 0.0759589821496392 RFvsST 111809 720561207 720449399 no 285.212775992335 TraesCS6B01G134200 chr6B_131221805 chr6B 131221805 G C G C 3 missense_variant MODERATE transcript non_Triplet 131220748 131223380 2633 2 0.0759589821496392 RFvsST 111809 720561207 720449399 no 285.212775992335 TraesCS6B01G135100 chr6B_132315340 chr6B 132315340 C T C T 3 missense_variant MODERATE transcript unique_Triplet 132314168 132318422 4255 3 0.0705052878965922 RFvsST 111809 720561207 720449399 no 12.9243564058922 TraesCS6B01G135100 chr6B_132316390 chr6B 132316390 C C T T 4 synonymous_variant LOW transcript unique_Triplet 132314168 132318422 4255 3 0.0705052878965922 RFvsST 111809 720561207 720449399 no 12.9243564058922 TraesCS6B01G135100 chr6B_132314505 chr6B 132314505 G A G A 3 synonymous_variant LOW transcript unique_Triplet 132314168 132318422 4255 3 0.0705052878965922 RFvsST 111809 720561207 720449399 no 12.9243564058922 TraesCS6B01G135400 chr6B_132443457 chr6B 132443457 G A G A 3 synonymous_variant LOW transcript unique_Triplet 132439732 132445403 5672 1 0.0176304654442877 RFvsST 111809 720561207 720449399 no 247.106671953468 TraesCS6B01G135800 chr6B_133127881 chr6B 133127881 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 133117356 133127600 10245 5 0.0488042947779405 RFvsST 111809 720561207 720449399 no 493.130115938228 TraesCS6B01G135800 chr6B_133127642 chr6B 133127642 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 133117356 133127600 10245 5 0.0488042947779405 RFvsST 111809 720561207 720449399 no 493.130115938228 TraesCS6B01G135800 chr6B_133117340 chr6B 133117340 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 133117356 133127600 10245 5 0.0488042947779405 RFvsST 111809 720561207 720449399 no 493.130115938228 TraesCS6B01G135800 chr6B_133122644 chr6B 133122644 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 133117356 133127600 10245 5 0.0488042947779405 RFvsST 111809 720561207 720449399 no 493.130115938228 TraesCS6B01G135800 chr6B_133120243 chr6B 133120243 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 133117356 133127600 10245 5 0.0488042947779405 RFvsST 111809 720561207 720449399 no 493.130115938228 TraesCS6B01G135900 chr6B_133163038 chr6B 133163038 G T G T 3 missense_variant MODERATE transcript unique_Triplet 133162253 133164934 2682 1 0.0372856077554064 RFvsST 111809 720561207 720449399 no 140.214382199115 TraesCS6B01G136300 chr6B_133698276 chr6B 133698276 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 133691429 133698315 6887 3 0.043560331058516 RFvsST 111809 720561207 720449399 no 156.54875945916 TraesCS6B01G136300 chr6B_133698282 chr6B 133698282 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 133691429 133698315 6887 3 0.043560331058516 RFvsST 111809 720561207 720449399 no 156.54875945916 TraesCS6B01G136300 chr6B_133697469 chr6B 133697469 T T C C 4 synonymous_variant LOW transcript unique_Triplet 133691429 133698315 6887 3 0.043560331058516 RFvsST 111809 720561207 720449399 no 156.54875945916 TraesCS6B01G136400 chr6B_133846991 chr6B 133846991 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 133841813 133846945 5133 1 0.0194817845314631 RFvsST 111809 720561207 720449399 no 9.29105649924618 TraesCS6B01G137600 chr6B_135118420 chr6B 135118420 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 135118212 135120708 2497 1 0.040048057669203 RFvsST 111809 720561207 720449399 no 77.570556330931 TraesCS6B01G137700 chr6B_135122757 chr6B 135122757 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 135122662 135128444 5783 1 0.0172920629431091 RFvsST 111809 720561207 720449399 no 15.4776650547798 TraesCS6B01G138200 chr6B_135709576 chr6B 135709576 T T C C 4 missense_variant MODERATE transcript non_Triplet 135707764 135709973 2210 1 0.0452488687782805 RFvsST 111809 720561207 720449399 no 149.812768633522 TraesCS6B01G143800 chr6B_143458420 chr6B 143458420 T T C C 4 synonymous_variant LOW transcript unique_Triplet 143454873 143458849 3977 4 0.100578325370883 RFvsST 111809 720561207 720449399 no 31.115649534629 TraesCS6B01G143800 chr6B_143458156 chr6B 143458156 C C G G 4 missense_variant MODERATE transcript unique_Triplet 143454873 143458849 3977 4 0.100578325370883 RFvsST 111809 720561207 720449399 no 31.115649534629 TraesCS6B01G143800 chr6B_143458599 chr6B 143458599 G G C C 4 synonymous_variant LOW transcript unique_Triplet 143454873 143458849 3977 4 0.100578325370883 RFvsST 111809 720561207 720449399 no 31.115649534629 TraesCS6B01G143800 chr6B_143456804 chr6B 143456804 G G T T 4 missense_variant MODERATE transcript unique_Triplet 143454873 143458849 3977 4 0.100578325370883 RFvsST 111809 720561207 720449399 no 31.115649534629 TraesCS6B01G146300 chr6B_146841437 chr6B 146841437 G G T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 146837817 146840225 2409 1 0.04151100041511 RFvsST 111809 720561207 720449399 no 491.839096810414 TraesCS6B01G148200 chr6B_149416788 chr6B 149416788 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 149415389 149418332 2944 1 0.0339673913043478 RFvsST 111809 720561207 720449399 no 1615.55165350304 TraesCS6B01G149600 chr6B_150774689 chr6B 150774689 A A G G 4 synonymous_variant LOW transcript unique_Triplet 150771749 150774957 3209 1 0.0311623558741041 RFvsST 111809 720561207 720449399 no 127.899386084243 TraesCS6B01G149800 chr6B_151130418 chr6B 151130418 G A G A 3 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151131252 chr6B 151131252 C C T T 4 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151131342 chr6B 151131342 G G A A 4 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151131201 chr6B 151131201 C C T T 4 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151131387 chr6B 151131387 G G A A 4 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151130529 chr6B 151130529 A C A C 3 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151130562 chr6B 151130562 G A G A 3 synonymous_variant LOW transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G149800 chr6B_151131455 chr6B 151131455 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 151127202 151131396 4195 8 0.190703218116806 RFvsST 111809 720561207 720449399 no 937.693026343995 TraesCS6B01G151600 chr6B_153959656 chr6B 153959656 T T C C 4 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151600 chr6B_153958072 chr6B 153958072 A A G G 4 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151600 chr6B_153957322 chr6B 153957322 T G T G 3 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151600 chr6B_153956683 chr6B 153956683 G G A A 4 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151600 chr6B_153957925 chr6B 153957925 G G A A 4 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151600 chr6B_153956896 chr6B 153956896 A A G G 4 synonymous_variant LOW transcript unique_Triplet 153956593 153961439 4847 6 0.123787910047452 RFvsST 111809 720561207 720449399 no 672.799210599232 TraesCS6B01G151700 chr6B_155547407 chr6B 155547407 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155549195 chr6B 155549195 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155552586 chr6B 155552586 C T C T 3 missense_variant MODERATE transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155547294 chr6B 155547294 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155549616 chr6B 155549616 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155547650 chr6B 155547650 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155552428 chr6B 155552428 A T A T 3 missense_variant MODERATE transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155549787 chr6B 155549787 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155547403 chr6B 155547403 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155547999 chr6B 155547999 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155548194 chr6B 155548194 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151700 chr6B_155548185 chr6B 155548185 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 155549819 155552822 3004 12 0.399467376830892 RFvsST 111809 720561207 720449399 no 247.760301881124 TraesCS6B01G151900 chr6B_155761505 chr6B 155761505 T G T G 3 missense_variant MODERATE transcript unique_Triplet 155759756 155773448 13693 4 0.0292120061345213 RFvsST 111809 720561207 720449399 no 181.561229264243 TraesCS6B01G151900 chr6B_155762023 chr6B 155762023 A G A G 3 synonymous_variant LOW transcript unique_Triplet 155759756 155773448 13693 4 0.0292120061345213 RFvsST 111809 720561207 720449399 no 181.561229264243 TraesCS6B01G151900 chr6B_155764692 chr6B 155764692 T T C C 4 missense_variant MODERATE transcript unique_Triplet 155759756 155773448 13693 4 0.0292120061345213 RFvsST 111809 720561207 720449399 no 181.561229264243 TraesCS6B01G151900 chr6B_155761664 chr6B 155761664 G G A A 4 missense_variant MODERATE transcript unique_Triplet 155759756 155773448 13693 4 0.0292120061345213 RFvsST 111809 720561207 720449399 no 181.561229264243 TraesCS6B01G152000 chr6B_156219528 chr6B 156219528 G T G T 3 synonymous_variant LOW transcript unique_Triplet 156219094 156220844 1751 4 0.228440890919475 RFvsST 111809 720561207 720449399 no 28.4654004081209 TraesCS6B01G152000 chr6B_156219053 chr6B 156219053 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 156219094 156220844 1751 4 0.228440890919475 RFvsST 111809 720561207 720449399 no 28.4654004081209 TraesCS6B01G152000 chr6B_156219142 chr6B 156219142 G G A A 4 synonymous_variant LOW transcript unique_Triplet 156219094 156220844 1751 4 0.228440890919475 RFvsST 111809 720561207 720449399 no 28.4654004081209 TraesCS6B01G152000 chr6B_156219099 chr6B 156219099 G T G T 3 missense_variant MODERATE transcript unique_Triplet 156219094 156220844 1751 4 0.228440890919475 RFvsST 111809 720561207 720449399 no 28.4654004081209 TraesCS6B01G152700 chr6B_156527556 chr6B 156527556 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 156530034 156533189 3156 3 0.0950570342205323 RFvsST 111809 720561207 720449399 no 57.7345241045933 TraesCS6B01G152700 chr6B_156528428 chr6B 156528428 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 156530034 156533189 3156 3 0.0950570342205323 RFvsST 111809 720561207 720449399 no 57.7345241045933 TraesCS6B01G152700 chr6B_156527996 chr6B 156527996 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 156530034 156533189 3156 3 0.0950570342205323 RFvsST 111809 720561207 720449399 no 57.7345241045933 TraesCS6B01G156700 chr6B_159372299 chr6B 159372299 C C T T 4 synonymous_variant LOW transcript non_Triplet 159372039 159373220 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 55.3929237504445 TraesCS6B01G156700 chr6B_159372263 chr6B 159372263 C C A A 4 missense_variant MODERATE transcript non_Triplet 159372039 159373220 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 55.3929237504445 TraesCS6B01G156700 chr6B_159373144 chr6B 159373144 C C G G 4 missense_variant MODERATE transcript non_Triplet 159372039 159373220 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 55.3929237504445 TraesCS6B01G157400 chr6B_159689118 chr6B 159689118 C T C T 3 synonymous_variant LOW transcript unique_Triplet 159688273 159699991 11719 2 0.0170663025855448 RFvsST 111809 720561207 720449399 no 252.72256698666 TraesCS6B01G157400 chr6B_159689094 chr6B 159689094 C T C T 3 synonymous_variant LOW transcript unique_Triplet 159688273 159699991 11719 2 0.0170663025855448 RFvsST 111809 720561207 720449399 no 252.72256698666 TraesCS6B01G158300 chr6B_160899711 chr6B 160899711 G G T T 4 missense_variant MODERATE transcript unique_Triplet 160899142 160902898 3757 1 0.0266169816342827 RFvsST 111809 720561207 720449399 no 117.965586103107 TraesCS6B01G159200 chr6B_162171196 chr6B 162171196 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 162171269 162180773 9505 1 0.0105207785376118 RFvsST 111809 720561207 720449399 no 241.372162969656 TraesCS6B01G160800 chr6B_164388357 chr6B 164388357 A G A G 3 synonymous_variant LOW transcript non_Triplet 164388334 164394075 5742 2 0.0348310693138279 RFvsST 111809 720561207 720449399 no 60.1475730996787 TraesCS6B01G160800 chr6B_164393308 chr6B 164393308 T A T A 3 missense_variant MODERATE transcript non_Triplet 164388334 164394075 5742 2 0.0348310693138279 RFvsST 111809 720561207 720449399 no 60.1475730996787 TraesCS6B01G160900 chr6B_164569325 chr6B 164569325 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 164563821 164565335 1515 1 0.066006600660066 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G162000 chr6B_166594400 chr6B 166594400 A A G G 4 synonymous_variant LOW transcript non_Triplet 166593564 166595186 1623 1 0.0616142945163278 RFvsST 111809 720561207 720449399 no 104.774846557387 TraesCS6B01G162100 chr6B_166622657 chr6B 166622657 G G C C 4 missense_variant MODERATE transcript unique_Triplet 166621884 166623314 1431 1 0.0698812019566736 RFvsST 111809 720561207 720449399 no 324.570169657969 TraesCS6B01G162300 chr6B_168465018 chr6B 168465018 C C T T 4 missense_variant MODERATE transcript non_Triplet 168464861 168465908 1048 1 0.0954198473282443 RFvsST 111809 720561207 720449399 no 201.772241599077 TraesCS6B01G162600 chr6B_169110916 chr6B 169110916 G G C C 4 missense_variant MODERATE transcript unique_Triplet 169108188 169110945 2758 2 0.0725163161711385 RFvsST 111809 720561207 720449399 no 66.9534920925946 TraesCS6B01G162600 chr6B_169110831 chr6B 169110831 T T C C 4 synonymous_variant LOW transcript unique_Triplet 169108188 169110945 2758 2 0.0725163161711385 RFvsST 111809 720561207 720449399 no 66.9534920925946 TraesCS6B01G162800 chr6B_169220331 chr6B 169220331 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 169220664 169225762 5099 1 0.0196116885663856 RFvsST 111809 720561207 720449399 no 164.782714512571 TraesCS6B01G163200 chr6B_169316948 chr6B 169316948 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 169320725 169324009 3285 1 0.030441400304414 RFvsST 111809 720561207 720449399 no 79.4209010251206 TraesCS6B01G163400 chr6B_169486148 chr6B 169486148 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 169477126 169481744 4619 1 0.0216497077289457 RFvsST 111809 720561207 720449399 no 53.1419814369029 TraesCS6B01G164700 chr6B_171805067 chr6B 171805067 T T C C 4 intron_variant MODIFIER transcript nonUnique_Triplet 171754698 171805703 51006 1 0.00196055366035368 RFvsST 111809 720561207 720449399 no 244.196133622516 TraesCS6B01G165300 chr6B_172264831 chr6B 172264831 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 172264843 172265825 983 1 0.101729399796541 RFvsST 111809 720561207 720449399 no 161.038929647177 TraesCS6B01G165700 chr6B_172333828 chr6B 172333828 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 172333394 172333759 366 1 0.273224043715847 RFvsST 111809 720561207 720449399 no 47.2503615059248 TraesCS6B01G166100 chr6B_172726533 chr6B 172726533 G A G A 3 missense_variant MODERATE transcript unique_Triplet 172716277 172743132 26856 5 0.0186178135239797 RFvsST 111809 720561207 720449399 no 450.280385876004 TraesCS6B01G166100 chr6B_172733555 chr6B 172733555 A G A G 3 missense_variant MODERATE transcript unique_Triplet 172716277 172743132 26856 5 0.0186178135239797 RFvsST 111809 720561207 720449399 no 450.280385876004 TraesCS6B01G166100 chr6B_172715190 chr6B 172715190 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 172716277 172743132 26856 5 0.0186178135239797 RFvsST 111809 720561207 720449399 no 450.280385876004 TraesCS6B01G166100 chr6B_172735586 chr6B 172735586 G A G A 3 synonymous_variant LOW transcript unique_Triplet 172716277 172743132 26856 5 0.0186178135239797 RFvsST 111809 720561207 720449399 no 450.280385876004 TraesCS6B01G166100 chr6B_172716454 chr6B 172716454 A G A G 3 synonymous_variant LOW transcript unique_Triplet 172716277 172743132 26856 5 0.0186178135239797 RFvsST 111809 720561207 720449399 no 450.280385876004 TraesCS6B01G166400 chr6B_173573587 chr6B 173573587 T C T C 3 synonymous_variant LOW transcript unique_Triplet 173573507 173577650 4144 1 0.0241312741312741 RFvsST 111809 720561207 720449399 no 32.7202635613602 TraesCS6B01G166500 chr6B_173577900 chr6B 173577900 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 173580572 173580946 375 1 0.266666666666667 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G166600 chr6B_173796462 chr6B 173796462 C T C T 3 missense_variant MODERATE transcript non_Triplet 173796200 173804482 8283 1 0.0120729204394543 RFvsST 111809 720561207 720449399 no 33.5098521429163 TraesCS6B01G166700 chr6B_174567813 chr6B 174567813 C T C T 3 synonymous_variant LOW transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174566303 chr6B 174566303 G C G C 3 missense_variant MODERATE transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174561500 chr6B 174561500 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174566309 chr6B 174566309 C C G G 4 missense_variant MODERATE transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174567763 chr6B 174567763 C C T T 4 missense_variant MODERATE transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174566958 chr6B 174566958 A G A G 3 missense_variant MODERATE transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G166700 chr6B_174568619 chr6B 174568619 T C T C 3 missense_variant MODERATE transcript non_Triplet 174566052 174568798 2747 7 0.254823443756826 RFvsST 111809 720561207 720449399 no 138.996668843729 TraesCS6B01G173000 chr6B_185679513 chr6B 185679513 C C T T 4 missense_variant MODERATE transcript unique_Triplet 185673736 185681062 7327 1 0.0136481506755835 RFvsST 111809 720561207 720449399 no 353.282867733951 TraesCS6B01G179100 chr6B_199075982 chr6B 199075982 C T C T 3 missense_variant MODERATE transcript unique_Triplet 199073233 199076037 2805 1 0.035650623885918 RFvsST 111809 720561207 720449399 no 30.0633054819478 TraesCS6B01G179200 chr6B_199081159 chr6B 199081159 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 199076782 199080852 4071 4 0.098255956767379 RFvsST 111809 720561207 720449399 no 237.846857741283 TraesCS6B01G179200 chr6B_199078472 chr6B 199078472 T T C C 4 missense_variant MODERATE transcript non_Triplet 199076782 199080852 4071 4 0.098255956767379 RFvsST 111809 720561207 720449399 no 237.846857741283 TraesCS6B01G179200 chr6B_199080865 chr6B 199080865 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 199076782 199080852 4071 4 0.098255956767379 RFvsST 111809 720561207 720449399 no 237.846857741283 TraesCS6B01G179200 chr6B_199078216 chr6B 199078216 G T G T 3 missense_variant MODERATE transcript non_Triplet 199076782 199080852 4071 4 0.098255956767379 RFvsST 111809 720561207 720449399 no 237.846857741283 TraesCS6B01G179500 chr6B_199766507 chr6B 199766507 C C G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 199760175 199766598 6424 1 0.0155666251556663 RFvsST 111809 720561207 720449399 no 1214.17712543392 TraesCS6B01G179900 chr6B_200008738 chr6B 200008738 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 200005329 200010266 4938 2 0.0405022276225192 RFvsST 111809 720561207 720449399 no 503.294554751995 TraesCS6B01G179900 chr6B_200010219 chr6B 200010219 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 200005329 200010266 4938 2 0.0405022276225192 RFvsST 111809 720561207 720449399 no 503.294554751995 TraesCS6B01G180100 chr6B_200310662 chr6B 200310662 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 200310980 200314016 3037 2 0.0658544616397761 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G180100 chr6B_200312011 chr6B 200312011 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 200310980 200314016 3037 2 0.0658544616397761 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G180500 chr6B_201411816 chr6B 201411816 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 201407763 201411097 3335 1 0.0299850074962519 RFvsST 111809 720561207 720449399 no 9.68365368349162 TraesCS6B01G180700 chr6B_201450129 chr6B 201450129 A A T T 4 missense_variant MODERATE transcript unique_Triplet 201437087 201450992 13906 2 0.0143822810297713 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G180700 chr6B_201446029 chr6B 201446029 G G T T 4 missense_variant MODERATE transcript unique_Triplet 201437087 201450992 13906 2 0.0143822810297713 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G180800 chr6B_201451331 chr6B 201451331 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 201453325 201453817 493 1 0.202839756592292 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G181000 chr6B_202349611 chr6B 202349611 T A T A 3 missense_variant MODERATE transcript unique_Triplet 202349472 202351846 2375 2 0.0842105263157895 RFvsST 111809 720561207 720449399 no 53.5974835254717 TraesCS6B01G181000 chr6B_202351537 chr6B 202351537 C C A A 4 synonymous_variant LOW transcript unique_Triplet 202349472 202351846 2375 2 0.0842105263157895 RFvsST 111809 720561207 720449399 no 53.5974835254717 TraesCS6B01G181400 chr6B_203297739 chr6B 203297739 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 203297412 203298560 1149 3 0.261096605744125 RFvsST 111809 720561207 720449399 no 250.837751705668 TraesCS6B01G181400 chr6B_203297730 chr6B 203297730 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 203297412 203298560 1149 3 0.261096605744125 RFvsST 111809 720561207 720449399 no 250.837751705668 TraesCS6B01G181400 chr6B_203297758 chr6B 203297758 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 203297412 203298560 1149 3 0.261096605744125 RFvsST 111809 720561207 720449399 no 250.837751705668 TraesCS6B01G181500 chr6B_203687625 chr6B 203687625 G A G A 3 synonymous_variant LOW transcript unique_Triplet 203683670 203687709 4040 3 0.0742574257425743 RFvsST 111809 720561207 720449399 no 101.723182394118 TraesCS6B01G181500 chr6B_203683741 chr6B 203683741 C C G G 4 synonymous_variant LOW transcript unique_Triplet 203683670 203687709 4040 3 0.0742574257425743 RFvsST 111809 720561207 720449399 no 101.723182394118 TraesCS6B01G181500 chr6B_203684136 chr6B 203684136 C C T T 4 missense_variant MODERATE transcript unique_Triplet 203683670 203687709 4040 3 0.0742574257425743 RFvsST 111809 720561207 720449399 no 101.723182394118 TraesCS6B01G182600 chr6B_204451448 chr6B 204451448 G G A A 4 missense_variant MODERATE transcript non_Triplet 204450597 204452601 2005 2 0.0997506234413965 RFvsST 111809 720561207 720449399 no 325.880772778411 TraesCS6B01G182600 chr6B_204451565 chr6B 204451565 C C T T 4 missense_variant MODERATE transcript non_Triplet 204450597 204452601 2005 2 0.0997506234413965 RFvsST 111809 720561207 720449399 no 325.880772778411 TraesCS6B01G182700 chr6B_204477108 chr6B 204477108 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 204476209 204477557 1349 3 0.22238695329874 RFvsST 111809 720561207 720449399 no 82.0622367006523 TraesCS6B01G182700 chr6B_204477453 chr6B 204477453 T T C C 4 synonymous_variant LOW transcript unique_Triplet 204476209 204477557 1349 3 0.22238695329874 RFvsST 111809 720561207 720449399 no 82.0622367006523 TraesCS6B01G182700 chr6B_204476154 chr6B 204476154 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 204476209 204477557 1349 3 0.22238695329874 RFvsST 111809 720561207 720449399 no 82.0622367006523 TraesCS6B01G182800 chr6B_204547538 chr6B 204547538 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 204543123 204546699 3577 1 0.0279563880346659 RFvsST 111809 720561207 720449399 no 264.80954422348 TraesCS6B01G183000 chr6B_204609509 chr6B 204609509 G A G A 3 missense_variant MODERATE transcript unique_Triplet 204609237 204611871 2635 1 0.0379506641366224 RFvsST 111809 720561207 720449399 no 40.0290949130304 TraesCS6B01G183300 chr6B_204920960 chr6B 204920960 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 204920745 204922710 1966 3 0.152594099694812 RFvsST 111809 720561207 720449399 no 671.60605793016 TraesCS6B01G183300 chr6B_204922739 chr6B 204922739 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 204920745 204922710 1966 3 0.152594099694812 RFvsST 111809 720561207 720449399 no 671.60605793016 TraesCS6B01G183300 chr6B_204920945 chr6B 204920945 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 204920745 204922710 1966 3 0.152594099694812 RFvsST 111809 720561207 720449399 no 671.60605793016 TraesCS6B01G183600 chr6B_205261468 chr6B 205261468 T T C C 4 missense_variant MODERATE transcript unique_Triplet 205260756 205269519 8764 4 0.0456412596987677 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G183600 chr6B_205260495 chr6B 205260495 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 205260756 205269519 8764 4 0.0456412596987677 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G183600 chr6B_205261090 chr6B 205261090 C C T T 4 synonymous_variant LOW transcript unique_Triplet 205260756 205269519 8764 4 0.0456412596987677 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G183600 chr6B_205261776 chr6B 205261776 G G A A 4 synonymous_variant LOW transcript unique_Triplet 205260756 205269519 8764 4 0.0456412596987677 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G183800 chr6B_206007821 chr6B 206007821 C C T T 4 splice_region_variant&synonymous_variant LOW transcript nonUnique_Triplet 206007402 206010108 2707 3 0.110823790173624 RFvsST 111809 720561207 720449399 no 86.3973683086677 TraesCS6B01G183800 chr6B_206009337 chr6B 206009337 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 206007402 206010108 2707 3 0.110823790173624 RFvsST 111809 720561207 720449399 no 86.3973683086677 TraesCS6B01G183800 chr6B_206008445 chr6B 206008445 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 206007402 206010108 2707 3 0.110823790173624 RFvsST 111809 720561207 720449399 no 86.3973683086677 TraesCS6B01G183900 chr6B_206010695 chr6B 206010695 C C T T 4 missense_variant MODERATE transcript unique_Triplet 206010661 206014429 3769 1 0.0265322366675511 RFvsST 111809 720561207 720449399 no 35.2139953617449 TraesCS6B01G184000 chr6B_206443994 chr6B 206443994 T T A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 206442354 206443406 1053 1 0.0949667616334283 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G184200 chr6B_206832878 chr6B 206832878 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 206831644 206832859 1216 1 0.0822368421052631 RFvsST 111809 720561207 720449399 no 17.5119909951235 TraesCS6B01G184500 chr6B_207161452 chr6B 207161452 G G A A 4 synonymous_variant LOW transcript unique_Triplet 207161332 207166322 4991 3 0.060108194750551 RFvsST 111809 720561207 720449399 no 187.883391078609 TraesCS6B01G184500 chr6B_207161993 chr6B 207161993 T T A A 4 missense_variant MODERATE transcript unique_Triplet 207161332 207166322 4991 3 0.060108194750551 RFvsST 111809 720561207 720449399 no 187.883391078609 TraesCS6B01G184500 chr6B_207163218 chr6B 207163218 T T C C 4 missense_variant MODERATE transcript unique_Triplet 207161332 207166322 4991 3 0.060108194750551 RFvsST 111809 720561207 720449399 no 187.883391078609 TraesCS6B01G184600 chr6B_207454512 chr6B 207454512 G G A A 4 missense_variant MODERATE transcript non_Triplet 207452130 207454567 2438 2 0.0820344544708778 RFvsST 111809 720561207 720449399 no 25.548154700482 TraesCS6B01G184600 chr6B_207452556 chr6B 207452556 C T C T 3 synonymous_variant LOW transcript non_Triplet 207452130 207454567 2438 2 0.0820344544708778 RFvsST 111809 720561207 720449399 no 25.548154700482 TraesCS6B01G184800 chr6B_207928022 chr6B 207928022 T T C C 4 missense_variant MODERATE transcript non_Triplet 207923884 207929181 5298 5 0.0943752359380898 RFvsST 111809 720561207 720449399 no 488.524062035853 TraesCS6B01G184800 chr6B_207925256 chr6B 207925256 T T C C 4 synonymous_variant LOW transcript non_Triplet 207923884 207929181 5298 5 0.0943752359380898 RFvsST 111809 720561207 720449399 no 488.524062035853 TraesCS6B01G184800 chr6B_207928755 chr6B 207928755 A A G G 4 missense_variant MODERATE transcript non_Triplet 207923884 207929181 5298 5 0.0943752359380898 RFvsST 111809 720561207 720449399 no 488.524062035853 TraesCS6B01G184800 chr6B_207928058 chr6B 207928058 G G T T 4 missense_variant MODERATE transcript non_Triplet 207923884 207929181 5298 5 0.0943752359380898 RFvsST 111809 720561207 720449399 no 488.524062035853 TraesCS6B01G184800 chr6B_207925961 chr6B 207925961 A A G G 4 missense_variant MODERATE transcript non_Triplet 207923884 207929181 5298 5 0.0943752359380898 RFvsST 111809 720561207 720449399 no 488.524062035853 TraesCS6B01G185100 chr6B_209240943 chr6B 209240943 A A G G 4 synonymous_variant LOW transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185100 chr6B_209239885 chr6B 209239885 G G A A 4 missense_variant MODERATE transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185100 chr6B_209238449 chr6B 209238449 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185100 chr6B_209240407 chr6B 209240407 G G A A 4 missense_variant MODERATE transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185100 chr6B_209240756 chr6B 209240756 C C G G 4 missense_variant MODERATE transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185100 chr6B_209240055 chr6B 209240055 G G A A 4 synonymous_variant LOW transcript non_Triplet 209238508 209241056 2549 6 0.235386426049431 RFvsST 111809 720561207 720449399 no 577.971539755933 TraesCS6B01G185600 chr6B_211214986 chr6B 211214986 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 211209773 211210390 618 1 0.161812297734628 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G185700 chr6B_211214862 chr6B 211214862 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 211213702 211214958 1257 1 0.0795544948289578 RFvsST 111809 720561207 720449399 no 100.889698648376 TraesCS6B01G186300 chr6B_212418536 chr6B 212418536 A A G G 4 missense_variant MODERATE transcript unique_Triplet 212418216 212420759 2544 1 0.0393081761006289 RFvsST 111809 720561207 720449399 no 551.201707890634 TraesCS6B01G186400 chr6B_212566503 chr6B 212566503 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 212566571 212568267 1697 1 0.0589275191514437 RFvsST 111809 720561207 720449399 no 17.146862571046 TraesCS6B01G186500 chr6B_212571248 chr6B 212571248 C C T T 4 missense_variant MODERATE transcript unique_Triplet 212569058 212571626 2569 1 0.0389256520046711 RFvsST 111809 720561207 720449399 no 67.5398047777296 TraesCS6B01G187500 chr6B_214027375 chr6B 214027375 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 214025798 214028666 2869 1 0.0348553502962705 RFvsST 111809 720561207 720449399 no 701.555732455956 TraesCS6B01G187700 chr6B_215139430 chr6B 215139430 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 215140534 215149007 8474 3 0.0354024073637007 RFvsST 111809 720561207 720449399 no 27.3582645382583 TraesCS6B01G187700 chr6B_215139385 chr6B 215139385 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 215140534 215149007 8474 3 0.0354024073637007 RFvsST 111809 720561207 720449399 no 27.3582645382583 TraesCS6B01G187700 chr6B_215141864 chr6B 215141864 C C T T 4 synonymous_variant LOW transcript non_Triplet 215140534 215149007 8474 3 0.0354024073637007 RFvsST 111809 720561207 720449399 no 27.3582645382583 TraesCS6B01G188100 chr6B_216508178 chr6B 216508178 G G A A 4 synonymous_variant LOW transcript unique_Triplet 216507692 216513245 5554 1 0.0180050414115952 RFvsST 111809 720561207 720449399 no 52.2877150246563 TraesCS6B01G189100 chr6B_219012654 chr6B 219012654 C C T T 4 synonymous_variant LOW transcript non_Triplet 219012556 219013878 1323 1 0.0755857898715042 RFvsST 111809 720561207 720449399 no 259.658745615987 TraesCS6B01G189300 chr6B_219096216 chr6B 219096216 G G A A 4 splice_donor_variant&intron_variant HIGH transcript unique_Triplet 219095834 219097682 1849 1 0.0540832882639265 RFvsST 111809 720561207 720449399 no 99.9844075680307 TraesCS6B01G189800 chr6B_221402280 chr6B 221402280 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 221402418 221408580 6163 1 0.0162258640272595 RFvsST 111809 720561207 720449399 no 33.9956095215499 TraesCS6B01G190800 chr6B_224215557 chr6B 224215557 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 224210428 224212796 2369 1 0.0422119037568594 RFvsST 111809 720561207 720449399 no 200.813205045399 TraesCS6B01G190900 chr6B_224257152 chr6B 224257152 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 224253616 224257150 3535 1 0.0282885431400283 RFvsST 111809 720561207 720449399 no 202.062096317021 TraesCS6B01G192100 chr6B_226368820 chr6B 226368820 G G A A 4 synonymous_variant LOW transcript unique_Triplet 226365078 226369505 4428 1 0.022583559168925 RFvsST 111809 720561207 720449399 no 12.0052645151969 TraesCS6B01G192500 chr6B_226866957 chr6B 226866957 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 226859460 226866130 6671 3 0.0449707690001499 RFvsST 111809 720561207 720449399 no 107.20756270351 TraesCS6B01G192500 chr6B_226865992 chr6B 226865992 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 226859460 226866130 6671 3 0.0449707690001499 RFvsST 111809 720561207 720449399 no 107.20756270351 TraesCS6B01G192500 chr6B_226867032 chr6B 226867032 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 226859460 226866130 6671 3 0.0449707690001499 RFvsST 111809 720561207 720449399 no 107.20756270351 TraesCS6B01G192900 chr6B_227270003 chr6B 227270003 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 227269116 227269694 579 1 0.172711571675302 RFvsST 111809 720561207 720449399 no 1039.76213223665 TraesCS6B01G193000 chr6B_227273488 chr6B 227273488 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 227271123 227276294 5172 1 0.0193348801237432 RFvsST 111809 720561207 720449399 no 164.788288647546 TraesCS6B01G193300 chr6B_227831124 chr6B 227831124 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 227825543 227834207 8665 3 0.0346220427005193 RFvsST 111809 720561207 720449399 no 152.460635547454 TraesCS6B01G193300 chr6B_227833984 chr6B 227833984 C C G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 227825543 227834207 8665 3 0.0346220427005193 RFvsST 111809 720561207 720449399 no 152.460635547454 TraesCS6B01G193300 chr6B_227830990 chr6B 227830990 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 227825543 227834207 8665 3 0.0346220427005193 RFvsST 111809 720561207 720449399 no 152.460635547454 TraesCS6B01G193700 chr6B_228696808 chr6B 228696808 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 228696666 228702395 5730 1 0.0174520069808028 RFvsST 111809 720561207 720449399 no 154.368140579329 TraesCS6B01G194000 chr6B_228977121 chr6B 228977121 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 228972691 228976972 4282 1 0.0233535730966838 RFvsST 111809 720561207 720449399 no 71.2336356128402 TraesCS6B01G194500 chr6B_229278866 chr6B 229278866 C T C T 3 missense_variant MODERATE transcript unique_Triplet 229278445 229281375 2931 4 0.136472193790515 RFvsST 111809 720561207 720449399 no 285.929550731233 TraesCS6B01G194500 chr6B_229279621 chr6B 229279621 A A G G 4 synonymous_variant LOW transcript unique_Triplet 229278445 229281375 2931 4 0.136472193790515 RFvsST 111809 720561207 720449399 no 285.929550731233 TraesCS6B01G194500 chr6B_229278768 chr6B 229278768 G A G A 3 missense_variant MODERATE transcript unique_Triplet 229278445 229281375 2931 4 0.136472193790515 RFvsST 111809 720561207 720449399 no 285.929550731233 TraesCS6B01G194500 chr6B_229278273 chr6B 229278273 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 229278445 229281375 2931 4 0.136472193790515 RFvsST 111809 720561207 720449399 no 285.929550731233 TraesCS6B01G194700 chr6B_229520129 chr6B 229520129 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 229523885 229530722 6838 2 0.0292483182217023 RFvsST 111809 720561207 720449399 no 209.989350431651 TraesCS6B01G194700 chr6B_229520226 chr6B 229520226 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 229523885 229530722 6838 2 0.0292483182217023 RFvsST 111809 720561207 720449399 no 209.989350431651 TraesCS6B01G195300 chr6B_230763752 chr6B 230763752 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 230763371 230768203 4833 1 0.0206910821435961 RFvsST 111809 720561207 720449399 no 93.4590623412909 TraesCS6B01G195400 chr6B_231356969 chr6B 231356969 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231348425 231353432 5008 3 0.0599041533546326 RFvsST 111809 720561207 720449399 no 110.246694887154 TraesCS6B01G195400 chr6B_231348477 chr6B 231348477 G G A A 4 missense_variant MODERATE transcript unique_Triplet 231348425 231353432 5008 3 0.0599041533546326 RFvsST 111809 720561207 720449399 no 110.246694887154 TraesCS6B01G195400 chr6B_231349353 chr6B 231349353 C C T T 4 synonymous_variant LOW transcript unique_Triplet 231348425 231353432 5008 3 0.0599041533546326 RFvsST 111809 720561207 720449399 no 110.246694887154 TraesCS6B01G195600 chr6B_231356733 chr6B 231356733 G A G A 3 synonymous_variant LOW transcript unique_Triplet 231354284 231356741 2458 1 0.0406834825061025 RFvsST 111809 720561207 720449399 no 29.9655620893551 TraesCS6B01G195800 chr6B_231688333 chr6B 231688333 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689221 chr6B 231689221 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231688374 chr6B 231688374 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689207 chr6B 231689207 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231688346 chr6B 231688346 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231688952 chr6B 231688952 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689499 chr6B 231689499 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231687954 chr6B 231687954 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231687973 chr6B 231687973 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689319 chr6B 231689319 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231688987 chr6B 231688987 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689241 chr6B 231689241 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689147 chr6B 231689147 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689433 chr6B 231689433 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689273 chr6B 231689273 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G195800 chr6B_231689550 chr6B 231689550 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 231683121 231685677 2557 16 0.625733281188893 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G197100 chr6B_233694795 chr6B 233694795 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 233693992 233694672 681 1 0.146842878120411 RFvsST 111809 720561207 720449399 no 1105.15852686731 TraesCS6B01G197300 chr6B_234560434 chr6B 234560434 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 234559025 234560314 1290 1 0.0775193798449612 RFvsST 111809 720561207 720449399 no 1015.65880615196 TraesCS6B01G198000 chr6B_236571842 chr6B 236571842 A A G G 4 missense_variant MODERATE transcript non_Triplet 236571165 236573619 2455 3 0.122199592668024 RFvsST 111809 720561207 720449399 no 240.271568634061 TraesCS6B01G198000 chr6B_236576788 chr6B 236576788 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 236571165 236573619 2455 3 0.122199592668024 RFvsST 111809 720561207 720449399 no 240.271568634061 TraesCS6B01G198000 chr6B_236573089 chr6B 236573089 G A G A 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 236571165 236573619 2455 3 0.122199592668024 RFvsST 111809 720561207 720449399 no 240.271568634061 TraesCS6B01G198600 chr6B_237698187 chr6B 237698187 T T C C 4 synonymous_variant LOW transcript unique_Triplet 237696479 237699959 3481 1 0.0287273771904625 RFvsST 111809 720561207 720449399 no 35.9166751853745 TraesCS6B01G198900 chr6B_238156202 chr6B 238156202 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 238154605 238156731 2127 1 0.0470145745181006 RFvsST 111809 720561207 720449399 no 145.538927162132 TraesCS6B01G199000 chr6B_238167938 chr6B 238167938 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 238167817 238172385 4569 1 0.0218866272707376 RFvsST 111809 720561207 720449399 no 310.728225077424 TraesCS6B01G201600 chr6B_245977727 chr6B 245977727 G G C C 4 missense_variant MODERATE transcript unique_Triplet 245974372 245977749 3378 1 0.029603315571344 RFvsST 111809 720561207 720449399 no 59.6268020150611 TraesCS6B01G202700 chr6B_248350572 chr6B 248350572 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 248351482 248357147 5666 1 0.0176491351923756 RFvsST 111809 720561207 720449399 no 128.449869372352 TraesCS6B01G203200 chr6B_248505024 chr6B 248505024 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 248504994 248509532 4539 1 0.0220312844238819 RFvsST 111809 720561207 720449399 no 539.378293030696 TraesCS6B01G203500 chr6B_249498627 chr6B 249498627 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 249496719 249496931 213 3 1.40845070422535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G203500 chr6B_249498041 chr6B 249498041 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 249496719 249496931 213 3 1.40845070422535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G203500 chr6B_249498169 chr6B 249498169 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 249496719 249496931 213 3 1.40845070422535 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G204700 chr6B_255268901 chr6B 255268901 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 255268808 255271366 2559 1 0.0390777647518562 RFvsST 111809 720561207 720449399 no 27.9624260408884 TraesCS6B01G205800 chr6B_257993802 chr6B 257993802 G A G A 3 missense_variant MODERATE transcript non_Triplet 257991389 257996687 5299 4 0.0754859407435365 RFvsST 111809 720561207 720449399 no 67.7959901299538 TraesCS6B01G205800 chr6B_257993869 chr6B 257993869 A G A G 3 synonymous_variant LOW transcript non_Triplet 257991389 257996687 5299 4 0.0754859407435365 RFvsST 111809 720561207 720449399 no 67.7959901299538 TraesCS6B01G205800 chr6B_257996714 chr6B 257996714 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 257991389 257996687 5299 4 0.0754859407435365 RFvsST 111809 720561207 720449399 no 67.7959901299538 TraesCS6B01G205800 chr6B_257993727 chr6B 257993727 T G T G 3 missense_variant MODERATE transcript non_Triplet 257991389 257996687 5299 4 0.0754859407435365 RFvsST 111809 720561207 720449399 no 67.7959901299538 TraesCS6B01G206000 chr6B_258234855 chr6B 258234855 A C A C 3 intron_variant MODIFIER transcript non_Triplet 258234353 258235288 936 1 0.106837606837607 RFvsST 111809 720561207 720449399 no 452.700715239887 TraesCS6B01G206100 chr6B_258762499 chr6B 258762499 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 258757332 258762433 5102 3 0.0588004704037632 RFvsST 111809 720561207 720449399 no 10.1505248687449 TraesCS6B01G206100 chr6B_258757261 chr6B 258757261 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 258757332 258762433 5102 3 0.0588004704037632 RFvsST 111809 720561207 720449399 no 10.1505248687449 TraesCS6B01G206100 chr6B_258757258 chr6B 258757258 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 258757332 258762433 5102 3 0.0588004704037632 RFvsST 111809 720561207 720449399 no 10.1505248687449 TraesCS6B01G206400 chr6B_259292578 chr6B 259292578 G G A A 4 synonymous_variant LOW transcript unique_Triplet 259288375 259298258 9884 4 0.0404694455685957 RFvsST 111809 720561207 720449399 no 162.848624367296 TraesCS6B01G206400 chr6B_259291673 chr6B 259291673 G C G C 3 missense_variant MODERATE transcript unique_Triplet 259288375 259298258 9884 4 0.0404694455685957 RFvsST 111809 720561207 720449399 no 162.848624367296 TraesCS6B01G206400 chr6B_259291063 chr6B 259291063 A C A C 3 missense_variant MODERATE transcript unique_Triplet 259288375 259298258 9884 4 0.0404694455685957 RFvsST 111809 720561207 720449399 no 162.848624367296 TraesCS6B01G206400 chr6B_259297983 chr6B 259297983 G G C C 4 missense_variant MODERATE transcript unique_Triplet 259288375 259298258 9884 4 0.0404694455685957 RFvsST 111809 720561207 720449399 no 162.848624367296 TraesCS6B01G206500 chr6B_259883179 chr6B 259883179 G A G A 3 synonymous_variant LOW transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259883491 chr6B 259883491 G A G A 3 synonymous_variant LOW transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259884011 chr6B 259884011 C T C T 3 missense_variant MODERATE transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259881611 chr6B 259881611 T C T C 3 synonymous_variant LOW transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259878151 chr6B 259878151 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259877872 chr6B 259877872 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259881883 chr6B 259881883 A G A G 3 synonymous_variant LOW transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259881826 chr6B 259881826 T T C C 4 synonymous_variant LOW transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206500 chr6B_259881942 chr6B 259881942 C C T T 4 missense_variant MODERATE transcript unique_Triplet 259878303 259888531 10229 9 0.0879851402874181 RFvsST 111809 720561207 720449399 no 25.5243286804992 TraesCS6B01G206800 chr6B_260548488 chr6B 260548488 C C T T 4 synonymous_variant LOW transcript unique_Triplet 260548278 260551471 3194 2 0.0626174076393237 RFvsST 111809 720561207 720449399 no 144.780430386127 TraesCS6B01G206800 chr6B_260548319 chr6B 260548319 C T C T 3 missense_variant MODERATE transcript unique_Triplet 260548278 260551471 3194 2 0.0626174076393237 RFvsST 111809 720561207 720449399 no 144.780430386127 TraesCS6B01G207100 chr6B_261532048 chr6B 261532048 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G207100 chr6B_261532259 chr6B 261532259 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G207100 chr6B_261533085 chr6B 261533085 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G207100 chr6B_261533177 chr6B 261533177 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G207100 chr6B_261532400 chr6B 261532400 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G207100 chr6B_261533192 chr6B 261533192 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 261527560 261531133 3574 6 0.167879127028539 RFvsST 111809 720561207 720449399 no 531.390940202518 TraesCS6B01G208900 chr6B_274208365 chr6B 274208365 G G A A 4 missense_variant MODERATE transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274206745 chr6B 274206745 C C G G 4 missense_variant MODERATE transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274214742 chr6B 274214742 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274207831 chr6B 274207831 C T C T 3 missense_variant MODERATE transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274211315 chr6B 274211315 G G A A 4 synonymous_variant LOW transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274208315 chr6B 274208315 T T C C 4 synonymous_variant LOW transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G208900 chr6B_274209042 chr6B 274209042 G G A A 4 missense_variant MODERATE transcript unique_Triplet 274206425 274213729 7305 7 0.0958247775496235 RFvsST 111809 720561207 720449399 no 296.952916492294 TraesCS6B01G209100 chr6B_274985928 chr6B 274985928 C C A A 4 missense_variant MODERATE transcript non_Triplet 274985071 274988727 3657 1 0.0273448181569593 RFvsST 111809 720561207 720449399 no 78.8456257306802 TraesCS6B01G209400 chr6B_276220865 chr6B 276220865 A A G G 4 synonymous_variant LOW transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209400 chr6B_276220842 chr6B 276220842 G C G C 3 missense_variant MODERATE transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209400 chr6B_276221225 chr6B 276221225 T T C C 4 synonymous_variant LOW transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209400 chr6B_276220922 chr6B 276220922 C C G G 4 missense_variant MODERATE transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209400 chr6B_276223961 chr6B 276223961 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209400 chr6B_276221109 chr6B 276221109 C T C T 3 missense_variant MODERATE transcript unique_Triplet 276218538 276222005 3468 6 0.173010380622837 RFvsST 111809 720561207 720449399 no 228.555425566102 TraesCS6B01G209600 chr6B_276515417 chr6B 276515417 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 276509986 276515180 5195 1 0.0192492781520693 RFvsST 111809 720561207 720449399 no 11.185512530443 TraesCS6B01G209800 chr6B_276735914 chr6B 276735914 T T C C 4 synonymous_variant LOW transcript unique_Triplet 276732442 276736109 3668 1 0.0272628135223555 RFvsST 111809 720561207 720449399 no 28.9730552188547 TraesCS6B01G209900 chr6B_276742012 chr6B 276742012 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 276739968 276742029 2062 1 0.0484966052376334 RFvsST 111809 720561207 720449399 no 12.133049781829 TraesCS6B01G210200 chr6B_277613016 chr6B 277613016 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 277612829 277616737 3909 1 0.0255819902788437 RFvsST 111809 720561207 720449399 no 203.302707550831 TraesCS6B01G210500 chr6B_278125876 chr6B 278125876 G G C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 278126021 278129893 3873 1 0.0258197779499096 RFvsST 111809 720561207 720449399 no 93.3518889243564 TraesCS6B01G210700 chr6B_278540139 chr6B 278540139 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 278539584 278541676 2093 2 0.0955566172957477 RFvsST 111809 720561207 720449399 no 622.632376962632 TraesCS6B01G210700 chr6B_278541427 chr6B 278541427 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 278539584 278541676 2093 2 0.0955566172957477 RFvsST 111809 720561207 720449399 no 622.632376962632 TraesCS6B01G210900 chr6B_279012717 chr6B 279012717 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 279008081 279008551 471 2 0.424628450106157 RFvsST 111809 720561207 720449399 no 7.27269642654521 TraesCS6B01G210900 chr6B_279012745 chr6B 279012745 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 279008081 279008551 471 2 0.424628450106157 RFvsST 111809 720561207 720449399 no 7.27269642654521 TraesCS6B01G212100 chr6B_280099809 chr6B 280099809 C A C A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 280092179 280100829 8651 1 0.0115593572997341 RFvsST 111809 720561207 720449399 no 64.7685155189827 TraesCS6B01G212900 chr6B_282985933 chr6B 282985933 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 282981264 282985277 4014 1 0.0249128051818635 RFvsST 111809 720561207 720449399 no 127.342679829172 TraesCS6B01G213700 chr6B_288654460 chr6B 288654460 T C T C 3 synonymous_variant LOW transcript unique_Triplet 288648462 288656985 8524 1 0.011731581417175 RFvsST 111809 720561207 720449399 no 425.168033461549 TraesCS6B01G213800 chr6B_288795071 chr6B 288795071 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 288793653 288794912 1260 1 0.0793650793650794 RFvsST 111809 720561207 720449399 no 189.696626644915 TraesCS6B01G215100 chr6B_290713549 chr6B 290713549 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 290710328 290718012 7685 3 0.0390370852309694 RFvsST 111809 720561207 720449399 no 275.756140482936 TraesCS6B01G215100 chr6B_290715821 chr6B 290715821 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 290710328 290718012 7685 3 0.0390370852309694 RFvsST 111809 720561207 720449399 no 275.756140482936 TraesCS6B01G215100 chr6B_290710506 chr6B 290710506 G G C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 290710328 290718012 7685 3 0.0390370852309694 RFvsST 111809 720561207 720449399 no 275.756140482936 TraesCS6B01G215800 chr6B_295767877 chr6B 295767877 G A G A 3 synonymous_variant LOW transcript unique_Triplet 295765456 295768838 3383 2 0.0591191250369495 RFvsST 111809 720561207 720449399 no 730.665490875052 TraesCS6B01G215800 chr6B_295766293 chr6B 295766293 G G A A 4 synonymous_variant LOW transcript unique_Triplet 295765456 295768838 3383 2 0.0591191250369495 RFvsST 111809 720561207 720449399 no 730.665490875052 TraesCS6B01G216100 chr6B_297302513 chr6B 297302513 T T C C 4 intron_variant MODIFIER transcript non_Triplet 297300176 297305520 5345 3 0.0561272217025257 RFvsST 111809 720561207 720449399 no 342.663507729236 TraesCS6B01G216100 chr6B_297302564 chr6B 297302564 G A G A 3 intron_variant MODIFIER transcript non_Triplet 297300176 297305520 5345 3 0.0561272217025257 RFvsST 111809 720561207 720449399 no 342.663507729236 TraesCS6B01G216100 chr6B_297302255 chr6B 297302255 G G A A 4 intron_variant MODIFIER transcript non_Triplet 297300176 297305520 5345 3 0.0561272217025257 RFvsST 111809 720561207 720449399 no 342.663507729236 TraesCS6B01G217300 chr6B_299048277 chr6B 299048277 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 299046766 299048482 1717 1 0.05824111822947 RFvsST 111809 720561207 720449399 no 340.173890100074 TraesCS6B01G217400 chr6B_299053303 chr6B 299053303 G G A A 4 missense_variant MODERATE transcript unique_Triplet 299049984 299054831 4848 1 0.0206270627062706 RFvsST 111809 720561207 720449399 no 34.9824483695409 TraesCS6B01G218400 chr6B_301611229 chr6B 301611229 G A G A 3 missense_variant MODERATE transcript non_Triplet 301583337 301611359 28023 1 0.00356849730578453 RFvsST 111809 720561207 720449399 no 10.5619236972888 TraesCS6B01G219800 chr6B_309748844 chr6B 309748844 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 309749563 309755673 6111 1 0.0163639338897071 RFvsST 111809 720561207 720449399 no 207.953896578901 TraesCS6B01G220900 chr6B_315653503 chr6B 315653503 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 315651369 315653479 2111 1 0.0473709142586452 RFvsST 111809 720561207 720449399 no 22.4619948933476 TraesCS6B01G221000 chr6B_316459258 chr6B 316459258 T T C C 4 missense_variant MODERATE transcript non_Triplet 316459176 316460612 1437 1 0.069589422407794 RFvsST 111809 720561207 720449399 no 119.363993217767 TraesCS6B01G222000 chr6B_320551755 chr6B 320551755 G G C C 4 missense_variant MODERATE transcript unique_Triplet 320548990 320551848 2859 1 0.0349772647778944 RFvsST 111809 720561207 720449399 no 95.794553491078 TraesCS6B01G223200 chr6B_333506490 chr6B 333506490 G G A A 4 missense_variant MODERATE transcript non_Triplet 333502913 333533553 30641 1 0.00326360105740674 RFvsST 111809 720561207 720449399 no 33.5569975737874 TraesCS6B01G224600 chr6B_342992993 chr6B 342992993 G G A A 4 synonymous_variant LOW transcript non_Triplet 342982698 343044248 61551 2 0.00324933794739322 RFvsST 111809 720561207 720449399 no 867.826767128835 TraesCS6B01G224600 chr6B_343020181 chr6B 343020181 T T G G 4 missense_variant MODERATE transcript non_Triplet 342982698 343044248 61551 2 0.00324933794739322 RFvsST 111809 720561207 720449399 no 867.826767128835 TraesCS6B01G225100 chr6B_346318627 chr6B 346318627 A G A G 3 missense_variant MODERATE transcript unique_Triplet 346313724 346319826 6103 1 0.0163853842372604 RFvsST 111809 720561207 720449399 no 13.0061362697438 TraesCS6B01G226000 chr6B_347752236 chr6B 347752236 A G A G 3 missense_variant MODERATE transcript unique_Triplet 347748135 347752612 4478 1 0.0223313979455114 RFvsST 111809 720561207 720449399 no 333.514861565139 TraesCS6B01G226200 chr6B_348092934 chr6B 348092934 T T A A 4 missense_variant MODERATE transcript unique_Triplet 348092335 348095722 3388 1 0.0295159386068477 RFvsST 111809 720561207 720449399 no 164.220021603981 TraesCS6B01G226900 chr6B_349463859 chr6B 349463859 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 349466695 349472869 6175 1 0.0161943319838057 RFvsST 111809 720561207 720449399 no 24.9120667294638 TraesCS6B01G227300 chr6B_352066913 chr6B 352066913 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 352064806 352095106 30301 4 0.0132008844592588 RFvsST 111809 720561207 720449399 no 30.3385940188987 TraesCS6B01G227300 chr6B_352068220 chr6B 352068220 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 352064806 352095106 30301 4 0.0132008844592588 RFvsST 111809 720561207 720449399 no 30.3385940188987 TraesCS6B01G227300 chr6B_352064565 chr6B 352064565 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 352064806 352095106 30301 4 0.0132008844592588 RFvsST 111809 720561207 720449399 no 30.3385940188987 TraesCS6B01G227300 chr6B_352066007 chr6B 352066007 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 352064806 352095106 30301 4 0.0132008844592588 RFvsST 111809 720561207 720449399 no 30.3385940188987 TraesCS6B01G227800 chr6B_353872242 chr6B 353872242 T C T C 3 stop_lost HIGH transcript non_Triplet 353872167 353876589 4423 1 0.0226090888537192 RFvsST 111809 720561207 720449399 no 755.728468100757 TraesCS6B01G230800 chr6B_375640780 chr6B 375640780 A C A C 3 missense_variant MODERATE transcript non_Triplet 375638339 375642790 4452 3 0.0673854447439353 RFvsST 111809 720561207 720449399 no 573.495599641006 TraesCS6B01G230800 chr6B_375642818 chr6B 375642818 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 375638339 375642790 4452 3 0.0673854447439353 RFvsST 111809 720561207 720449399 no 573.495599641006 TraesCS6B01G230800 chr6B_375639714 chr6B 375639714 C T C T 3 missense_variant MODERATE transcript non_Triplet 375638339 375642790 4452 3 0.0673854447439353 RFvsST 111809 720561207 720449399 no 573.495599641006 TraesCS6B01G231200 chr6B_378960485 chr6B 378960485 C T C T 3 missense_variant MODERATE transcript non_Triplet 378957870 378961035 3166 1 0.0315855969677827 RFvsST 111809 720561207 720449399 no 215.817734020527 TraesCS6B01G231600 chr6B_382769263 chr6B 382769263 T T C C 4 synonymous_variant LOW transcript non_Triplet 382768032 382776147 8116 1 0.0123213405618531 RFvsST 111809 720561207 720449399 no 250.556484648425 TraesCS6B01G232400 chr6B_388078408 chr6B 388078408 G T G T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 388073100 388078520 5421 3 0.0553403431101273 RFvsST 111809 720561207 720449399 no 82.4813920643065 TraesCS6B01G232400 chr6B_388074504 chr6B 388074504 C T C T 3 intron_variant MODIFIER transcript non_Triplet 388073100 388078520 5421 3 0.0553403431101273 RFvsST 111809 720561207 720449399 no 82.4813920643065 TraesCS6B01G232400 chr6B_388076037 chr6B 388076037 G T G T 3 missense_variant MODERATE transcript non_Triplet 388073100 388078520 5421 3 0.0553403431101273 RFvsST 111809 720561207 720449399 no 82.4813920643065 TraesCS6B01G233400 chr6B_389247679 chr6B 389247679 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 389239230 389243078 3849 1 0.025980774227072 RFvsST 111809 720561207 720449399 no 16.4292865770151 TraesCS6B01G233500 chr6B_389249137 chr6B 389249137 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 389252993 389254206 1214 3 0.247116968698517 RFvsST 111809 720561207 720449399 no 73.8779449211018 TraesCS6B01G233500 chr6B_389249452 chr6B 389249452 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 389252993 389254206 1214 3 0.247116968698517 RFvsST 111809 720561207 720449399 no 73.8779449211018 TraesCS6B01G233500 chr6B_389249316 chr6B 389249316 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 389252993 389254206 1214 3 0.247116968698517 RFvsST 111809 720561207 720449399 no 73.8779449211018 TraesCS6B01G234000 chr6B_392489648 chr6B 392489648 C G C G 3 missense_variant MODERATE transcript non_Triplet 392489403 392491117 1715 2 0.116618075801749 RFvsST 111809 720561207 720449399 no 49.3360916644149 TraesCS6B01G234000 chr6B_392486032 chr6B 392486032 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 392489403 392491117 1715 2 0.116618075801749 RFvsST 111809 720561207 720449399 no 49.3360916644149 TraesCS6B01G234100 chr6B_393071550 chr6B 393071550 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 393072866 393090448 17583 4 0.022749246431212 RFvsST 111809 720561207 720449399 no 260.375828211974 TraesCS6B01G234100 chr6B_393074737 chr6B 393074737 C C T T 4 missense_variant MODERATE transcript non_Triplet 393072866 393090448 17583 4 0.022749246431212 RFvsST 111809 720561207 720449399 no 260.375828211974 TraesCS6B01G234100 chr6B_393072171 chr6B 393072171 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 393072866 393090448 17583 4 0.022749246431212 RFvsST 111809 720561207 720449399 no 260.375828211974 TraesCS6B01G234100 chr6B_393072930 chr6B 393072930 C C G G 4 missense_variant MODERATE transcript non_Triplet 393072866 393090448 17583 4 0.022749246431212 RFvsST 111809 720561207 720449399 no 260.375828211974 TraesCS6B01G235200 chr6B_398839975 chr6B 398839975 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 398840071 398863195 23125 1 0.00432432432432432 RFvsST 111809 720561207 720449399 no 42.5793909860892 TraesCS6B01G235600 chr6B_402212274 chr6B 402212274 G C G C 3 synonymous_variant LOW transcript non_Triplet 402211097 402220687 9591 1 0.0104264414555312 RFvsST 111809 720561207 720449399 no 165.445725748544 TraesCS6B01G235700 chr6B_403194513 chr6B 403194513 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 403188008 403190837 2830 2 0.0706713780918728 RFvsST 111809 720561207 720449399 no 254.716452013078 TraesCS6B01G235700 chr6B_403195214 chr6B 403195214 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 403188008 403190837 2830 2 0.0706713780918728 RFvsST 111809 720561207 720449399 no 254.716452013078 TraesCS6B01G236600 chr6B_408243213 chr6B 408243213 G G A A 4 synonymous_variant LOW transcript unique_Triplet 408240993 408243636 2644 1 0.037821482602118 RFvsST 111809 720561207 720449399 no 2263.39549830067 TraesCS6B01G238000 chr6B_413955379 chr6B 413955379 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 413952808 413955080 2273 2 0.087989441267048 RFvsST 111809 720561207 720449399 no 322.483541758822 TraesCS6B01G238000 chr6B_413953629 chr6B 413953629 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 413952808 413955080 2273 2 0.087989441267048 RFvsST 111809 720561207 720449399 no 322.483541758822 TraesCS6B01G238400 chr6B_415035618 chr6B 415035618 G G C C 4 missense_variant MODERATE transcript unique_Triplet 415035088 415035687 600 1 0.166666666666667 RFvsST 111809 720561207 720449399 no 86.3043473845119 TraesCS6B01G238500 chr6B_415040382 chr6B 415040382 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 415036674 415040796 4123 1 0.0242541838467136 RFvsST 111809 720561207 720449399 no 248.375505248842 TraesCS6B01G239100 chr6B_415891895 chr6B 415891895 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 415873570 415890692 17123 1 0.00584009811364831 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G239800 chr6B_417231084 chr6B 417231084 T T C C 4 missense_variant MODERATE transcript unique_Triplet 417228472 417245481 17010 4 0.0235155790711346 RFvsST 111809 720561207 720449399 no 243.709375580908 TraesCS6B01G239800 chr6B_417229104 chr6B 417229104 C A C A 3 synonymous_variant LOW transcript unique_Triplet 417228472 417245481 17010 4 0.0235155790711346 RFvsST 111809 720561207 720449399 no 243.709375580908 TraesCS6B01G239800 chr6B_417228947 chr6B 417228947 A A T T 4 missense_variant MODERATE transcript unique_Triplet 417228472 417245481 17010 4 0.0235155790711346 RFvsST 111809 720561207 720449399 no 243.709375580908 TraesCS6B01G239800 chr6B_417238744 chr6B 417238744 G G A A 4 synonymous_variant LOW transcript unique_Triplet 417228472 417245481 17010 4 0.0235155790711346 RFvsST 111809 720561207 720449399 no 243.709375580908 TraesCS6B01G240200 chr6B_419774652 chr6B 419774652 A A C C 4 missense_variant MODERATE transcript non_Triplet 419771353 419776285 4933 2 0.0405432799513481 RFvsST 111809 720561207 720449399 no 59.322577901815 TraesCS6B01G240200 chr6B_419771816 chr6B 419771816 G G T T 4 missense_variant MODERATE transcript non_Triplet 419771353 419776285 4933 2 0.0405432799513481 RFvsST 111809 720561207 720449399 no 59.322577901815 TraesCS6B01G240900 chr6B_422649738 chr6B 422649738 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 422648541 422652737 4197 2 0.0476530855372885 RFvsST 111809 720561207 720449399 no 225.50233073106 TraesCS6B01G240900 chr6B_422649459 chr6B 422649459 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 422648541 422652737 4197 2 0.0476530855372885 RFvsST 111809 720561207 720449399 no 225.50233073106 TraesCS6B01G241100 chr6B_422702277 chr6B 422702277 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 422704677 422708404 3728 1 0.0268240343347639 RFvsST 111809 720561207 720449399 no 55.0642312166426 TraesCS6B01G241300 chr6B_423091449 chr6B 423091449 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 423091471 423096722 5252 1 0.019040365575019 RFvsST 111809 720561207 720449399 no 27.7945309723095 TraesCS6B01G241400 chr6B_423094955 chr6B 423094955 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423097686 chr6B 423097686 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423094260 chr6B 423094260 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423092411 chr6B 423092411 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423095473 chr6B 423095473 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423097658 chr6B 423097658 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423094420 chr6B 423094420 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241400 chr6B_423097639 chr6B 423097639 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 423093291 423093572 282 8 2.83687943262411 RFvsST 111809 720561207 720449399 no 43.1907129290879 TraesCS6B01G241600 chr6B_423406370 chr6B 423406370 A G A G 3 missense_variant MODERATE transcript unique_Triplet 423404111 423411176 7066 1 0.0141522785168412 RFvsST 111809 720561207 720449399 no 587.517012277558 TraesCS6B01G242500 chr6B_430368729 chr6B 430368729 G G A A 4 synonymous_variant LOW transcript non_Triplet 430368022 430369203 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 105.224963475215 TraesCS6B01G242500 chr6B_430367989 chr6B 430367989 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 430368022 430369203 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 105.224963475215 TraesCS6B01G242500 chr6B_430368632 chr6B 430368632 C T C T 3 missense_variant MODERATE transcript non_Triplet 430368022 430369203 1182 3 0.253807106598985 RFvsST 111809 720561207 720449399 no 105.224963475215 TraesCS6B01G242700 chr6B_431706344 chr6B 431706344 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431707284 chr6B 431707284 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431707764 chr6B 431707764 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431707427 chr6B 431707427 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431707418 chr6B 431707418 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431706118 chr6B 431706118 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431707920 chr6B 431707920 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G242700 chr6B_431706822 chr6B 431706822 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 431699884 431703018 3135 8 0.25518341307815 RFvsST 111809 720561207 720449399 no 128.890934403194 TraesCS6B01G243100 chr6B_432357950 chr6B 432357950 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 432357878 432371454 13577 5 0.0368269868159387 RFvsST 111809 720561207 720449399 no 120.314207902514 TraesCS6B01G243100 chr6B_432371193 chr6B 432371193 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 432357878 432371454 13577 5 0.0368269868159387 RFvsST 111809 720561207 720449399 no 120.314207902514 TraesCS6B01G243100 chr6B_432367293 chr6B 432367293 C C T T 4 intron_variant MODIFIER transcript nonUnique_Triplet 432357878 432371454 13577 5 0.0368269868159387 RFvsST 111809 720561207 720449399 no 120.314207902514 TraesCS6B01G243100 chr6B_432370883 chr6B 432370883 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 432357878 432371454 13577 5 0.0368269868159387 RFvsST 111809 720561207 720449399 no 120.314207902514 TraesCS6B01G243100 chr6B_432369334 chr6B 432369334 T C T C 3 intron_variant MODIFIER transcript nonUnique_Triplet 432357878 432371454 13577 5 0.0368269868159387 RFvsST 111809 720561207 720449399 no 120.314207902514 TraesCS6B01G244000 chr6B_434303183 chr6B 434303183 T C T C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 434298143 434303384 5242 4 0.0763067531476536 RFvsST 111809 720561207 720449399 no 845.801480663568 TraesCS6B01G244000 chr6B_434298279 chr6B 434298279 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 434298143 434303384 5242 4 0.0763067531476536 RFvsST 111809 720561207 720449399 no 845.801480663568 TraesCS6B01G244000 chr6B_434298224 chr6B 434298224 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 434298143 434303384 5242 4 0.0763067531476536 RFvsST 111809 720561207 720449399 no 845.801480663568 TraesCS6B01G244000 chr6B_434298223 chr6B 434298223 C C A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 434298143 434303384 5242 4 0.0763067531476536 RFvsST 111809 720561207 720449399 no 845.801480663568 TraesCS6B01G244100 chr6B_435305666 chr6B 435305666 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 435304902 435307859 2958 1 0.0338066260987153 RFvsST 111809 720561207 720449399 no 263.152878158226 TraesCS6B01G245400 chr6B_438099120 chr6B 438099120 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 438093189 438095423 2235 2 0.0894854586129754 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G245400 chr6B_438095393 chr6B 438095393 G G A A 4 synonymous_variant LOW transcript unique_Triplet 438093189 438095423 2235 2 0.0894854586129754 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G245500 chr6B_438109934 chr6B 438109934 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 438099726 438109628 9903 2 0.0201959002322529 RFvsST 111809 720561207 720449399 no 10.2104767894139 TraesCS6B01G245500 chr6B_438108024 chr6B 438108024 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 438099726 438109628 9903 2 0.0201959002322529 RFvsST 111809 720561207 720449399 no 10.2104767894139 TraesCS6B01G245800 chr6B_438407488 chr6B 438407488 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 438406713 438407408 696 4 0.574712643678161 RFvsST 111809 720561207 720449399 no 91.1586296034776 TraesCS6B01G245800 chr6B_438407366 chr6B 438407366 A A G G 4 synonymous_variant LOW transcript unique_Triplet 438406713 438407408 696 4 0.574712643678161 RFvsST 111809 720561207 720449399 no 91.1586296034776 TraesCS6B01G245800 chr6B_438406885 chr6B 438406885 C C G G 4 missense_variant MODERATE transcript unique_Triplet 438406713 438407408 696 4 0.574712643678161 RFvsST 111809 720561207 720449399 no 91.1586296034776 TraesCS6B01G245800 chr6B_438407258 chr6B 438407258 T T G G 4 synonymous_variant LOW transcript unique_Triplet 438406713 438407408 696 4 0.574712643678161 RFvsST 111809 720561207 720449399 no 91.1586296034776 TraesCS6B01G245900 chr6B_438628876 chr6B 438628876 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 438616459 438627869 11411 1 0.00876347384103058 RFvsST 111809 720561207 720449399 no 182.999246590357 TraesCS6B01G247200 chr6B_439393885 chr6B 439393885 C T C T 3 missense_variant MODERATE transcript unique_Triplet 439393125 439397533 4409 1 0.0226808800181447 RFvsST 111809 720561207 720449399 no 9.00947073427228 TraesCS6B01G247400 chr6B_440555506 chr6B 440555506 A G A G 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 440555414 440559372 3959 1 0.0252589037635767 RFvsST 111809 720561207 720449399 no 152.149259838129 TraesCS6B01G247500 chr6B_440783374 chr6B 440783374 G G A A 4 intron_variant MODIFIER transcript nonUnique_Triplet 440774690 440787507 12818 4 0.0312061163988142 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G247500 chr6B_440771589 chr6B 440771589 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 440774690 440787507 12818 4 0.0312061163988142 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G247500 chr6B_440784660 chr6B 440784660 G A G A 3 intron_variant MODIFIER transcript nonUnique_Triplet 440774690 440787507 12818 4 0.0312061163988142 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G247500 chr6B_440784017 chr6B 440784017 G A G A 3 intron_variant MODIFIER transcript nonUnique_Triplet 440774690 440787507 12818 4 0.0312061163988142 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G247800 chr6B_444542633 chr6B 444542633 G C G C 3 missense_variant MODERATE transcript unique_Triplet 444538637 444542796 4160 2 0.0480769230769231 RFvsST 111809 720561207 720449399 no 113.50794132131 TraesCS6B01G247800 chr6B_444542934 chr6B 444542934 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 444538637 444542796 4160 2 0.0480769230769231 RFvsST 111809 720561207 720449399 no 113.50794132131 TraesCS6B01G248000 chr6B_444741137 chr6B 444741137 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 444740237 444741334 1098 1 0.0910746812386157 RFvsST 111809 720561207 720449399 no 183.016914951126 TraesCS6B01G248100 chr6B_444749847 chr6B 444749847 G T G T 3 synonymous_variant LOW transcript unique_Triplet 444746446 444749885 3440 1 0.0290697674418605 RFvsST 111809 720561207 720449399 no 70.6350182896362 TraesCS6B01G248300 chr6B_445012165 chr6B 445012165 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 445008132 445012017 3886 1 0.0257334019557386 RFvsST 111809 720561207 720449399 no 182.316903330659 TraesCS6B01G248400 chr6B_445852320 chr6B 445852320 G A G A 3 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 445852257 445853495 1239 1 0.0807102502017756 RFvsST 111809 720561207 720449399 no 317.249833397802 TraesCS6B01G248500 chr6B_445883027 chr6B 445883027 C C A A 4 synonymous_variant LOW transcript unique_Triplet 445882778 445886075 3298 3 0.0909642207398423 RFvsST 111809 720561207 720449399 no 91.9813438574669 TraesCS6B01G248500 chr6B_445882992 chr6B 445882992 G G C C 4 missense_variant MODERATE transcript unique_Triplet 445882778 445886075 3298 3 0.0909642207398423 RFvsST 111809 720561207 720449399 no 91.9813438574669 TraesCS6B01G248500 chr6B_445882578 chr6B 445882578 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 445882778 445886075 3298 3 0.0909642207398423 RFvsST 111809 720561207 720449399 no 91.9813438574669 TraesCS6B01G248700 chr6B_446052196 chr6B 446052196 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 446054447 446056821 2375 3 0.126315789473684 RFvsST 111809 720561207 720449399 no 1683.7506474964 TraesCS6B01G248700 chr6B_446053573 chr6B 446053573 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 446054447 446056821 2375 3 0.126315789473684 RFvsST 111809 720561207 720449399 no 1683.7506474964 TraesCS6B01G248700 chr6B_446052294 chr6B 446052294 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 446054447 446056821 2375 3 0.126315789473684 RFvsST 111809 720561207 720449399 no 1683.7506474964 TraesCS6B01G248900 chr6B_446837625 chr6B 446837625 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 446835890 446836146 257 1 0.389105058365759 RFvsST 111809 720561207 720449399 no 29.3054458313192 TraesCS6B01G249300 chr6B_447115474 chr6B 447115474 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 447115424 447118968 3545 2 0.0564174894217207 RFvsST 111809 720561207 720449399 no 1.5387539841744 TraesCS6B01G249300 chr6B_447115707 chr6B 447115707 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 447115424 447118968 3545 2 0.0564174894217207 RFvsST 111809 720561207 720449399 no 1.5387539841744 TraesCS6B01G249400 chr6B_447662678 chr6B 447662678 T A T A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 447658352 447662609 4258 1 0.0234852043212776 RFvsST 111809 720561207 720449399 no 85.9879344170576 TraesCS6B01G249500 chr6B_447884775 chr6B 447884775 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 447884846 447888658 3813 1 0.0262260687123 RFvsST 111809 720561207 720449399 no 18.4086848114532 TraesCS6B01G249600 chr6B_447891958 chr6B 447891958 G G T T 4 missense_variant MODERATE transcript unique_Triplet 447890260 447892153 1894 3 0.158394931362196 RFvsST 111809 720561207 720449399 no 63.2811892824729 TraesCS6B01G249600 chr6B_447890340 chr6B 447890340 C C A A 4 missense_variant MODERATE transcript unique_Triplet 447890260 447892153 1894 3 0.158394931362196 RFvsST 111809 720561207 720449399 no 63.2811892824729 TraesCS6B01G249600 chr6B_447890506 chr6B 447890506 C C T T 4 synonymous_variant LOW transcript unique_Triplet 447890260 447892153 1894 3 0.158394931362196 RFvsST 111809 720561207 720449399 no 63.2811892824729 TraesCS6B01G249700 chr6B_447892836 chr6B 447892836 T C T C 3 synonymous_variant LOW transcript unique_Triplet 447892743 447895510 2768 1 0.0361271676300578 RFvsST 111809 720561207 720449399 no 200.926081038389 TraesCS6B01G249900 chr6B_449042690 chr6B 449042690 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 449038693 449044604 5912 4 0.06765899864682 RFvsST 111809 720561207 720449399 no 415.895216779465 TraesCS6B01G249900 chr6B_449044745 chr6B 449044745 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 449038693 449044604 5912 4 0.06765899864682 RFvsST 111809 720561207 720449399 no 415.895216779465 TraesCS6B01G249900 chr6B_449039304 chr6B 449039304 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 449038693 449044604 5912 4 0.06765899864682 RFvsST 111809 720561207 720449399 no 415.895216779465 TraesCS6B01G249900 chr6B_449041654 chr6B 449041654 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 449038693 449044604 5912 4 0.06765899864682 RFvsST 111809 720561207 720449399 no 415.895216779465 TraesCS6B01G250000 chr6B_449447859 chr6B 449447859 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 449447043 449447705 663 2 0.301659125188537 RFvsST 111809 720561207 720449399 no 770.544758053538 TraesCS6B01G250000 chr6B_449446970 chr6B 449446970 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 449447043 449447705 663 2 0.301659125188537 RFvsST 111809 720561207 720449399 no 770.544758053538 TraesCS6B01G250200 chr6B_449770773 chr6B 449770773 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 449766200 449771156 4957 1 0.0201734920314707 RFvsST 111809 720561207 720449399 no 72.2573845702294 TraesCS6B01G251100 chr6B_450136725 chr6B 450136725 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 450138112 450140533 2422 1 0.0412881915772089 RFvsST 111809 720561207 720449399 no 166.166376671417 TraesCS6B01G251200 chr6B_450589588 chr6B 450589588 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 450589590 450604475 14886 2 0.0134354426978369 RFvsST 111809 720561207 720449399 no 42.7442377418679 TraesCS6B01G251200 chr6B_450604343 chr6B 450604343 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 450589590 450604475 14886 2 0.0134354426978369 RFvsST 111809 720561207 720449399 no 42.7442377418679 TraesCS6B01G251400 chr6B_450652661 chr6B 450652661 G G C C 4 missense_variant MODERATE transcript unique_Triplet 450643928 450653475 9548 1 0.0104733975701718 RFvsST 111809 720561207 720449399 no 246.384226455254 TraesCS6B01G251500 chr6B_450896066 chr6B 450896066 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 450896743 450899106 2364 2 0.0846023688663283 RFvsST 111809 720561207 720449399 no 18.6680617915058 TraesCS6B01G251500 chr6B_450899024 chr6B 450899024 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 450896743 450899106 2364 2 0.0846023688663283 RFvsST 111809 720561207 720449399 no 18.6680617915058 TraesCS6B01G251900 chr6B_451930883 chr6B 451930883 A A T T 4 synonymous_variant LOW transcript unique_Triplet 451928029 451933514 5486 2 0.0364564345607 RFvsST 111809 720561207 720449399 no 43.5447321410807 TraesCS6B01G251900 chr6B_451930915 chr6B 451930915 G G A A 4 synonymous_variant LOW transcript unique_Triplet 451928029 451933514 5486 2 0.0364564345607 RFvsST 111809 720561207 720449399 no 43.5447321410807 TraesCS6B01G252100 chr6B_452187124 chr6B 452187124 C C T T 4 synonymous_variant LOW transcript unique_Triplet 452184606 452187937 3332 2 0.0600240096038415 RFvsST 111809 720561207 720449399 no 169.305256349413 TraesCS6B01G252100 chr6B_452187728 chr6B 452187728 G G C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 452184606 452187937 3332 2 0.0600240096038415 RFvsST 111809 720561207 720449399 no 169.305256349413 TraesCS6B01G252500 chr6B_452617103 chr6B 452617103 C C A A 4 synonymous_variant LOW transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452617371 chr6B 452617371 G G A A 4 synonymous_variant LOW transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452616698 chr6B 452616698 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452616640 chr6B 452616640 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452617150 chr6B 452617150 T C T C 3 missense_variant MODERATE transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452617788 chr6B 452617788 G G T T 4 synonymous_variant LOW transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452617749 chr6B 452617749 G G C C 4 synonymous_variant LOW transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G252500 chr6B_452616914 chr6B 452616914 A A G G 4 synonymous_variant LOW transcript unique_Triplet 452616405 452618406 2002 8 0.3996003996004 RFvsST 111809 720561207 720449399 no 130.939265802782 TraesCS6B01G253900 chr6B_457171315 chr6B 457171315 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 457168809 457171641 2833 2 0.0705965407695023 RFvsST 111809 720561207 720449399 no 674.439201026117 TraesCS6B01G253900 chr6B_457169447 chr6B 457169447 T C T C 3 missense_variant MODERATE transcript unique_Triplet 457168809 457171641 2833 2 0.0705965407695023 RFvsST 111809 720561207 720449399 no 674.439201026117 TraesCS6B01G255500 chr6B_459563662 chr6B 459563662 A C A C 3 synonymous_variant LOW transcript unique_Triplet 459560873 459565615 4743 2 0.0421674045962471 RFvsST 111809 720561207 720449399 no 72.2829284058152 TraesCS6B01G255500 chr6B_459561093 chr6B 459561093 C T C T 3 missense_variant MODERATE transcript unique_Triplet 459560873 459565615 4743 2 0.0421674045962471 RFvsST 111809 720561207 720449399 no 72.2829284058152 TraesCS6B01G255800 chr6B_459809805 chr6B 459809805 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 459804447 459809691 5245 1 0.0190657769304099 RFvsST 111809 720561207 720449399 no 30.4649731070849 TraesCS6B01G255900 chr6B_459811682 chr6B 459811682 C G C G 3 synonymous_variant LOW transcript unique_Triplet 459811484 459814876 3393 4 0.117889773062187 RFvsST 111809 720561207 720449399 no 486.98888762867 TraesCS6B01G255900 chr6B_459814864 chr6B 459814864 T T C C 4 missense_variant MODERATE transcript unique_Triplet 459811484 459814876 3393 4 0.117889773062187 RFvsST 111809 720561207 720449399 no 486.98888762867 TraesCS6B01G255900 chr6B_459812610 chr6B 459812610 T C T C 3 missense_variant MODERATE transcript unique_Triplet 459811484 459814876 3393 4 0.117889773062187 RFvsST 111809 720561207 720449399 no 486.98888762867 TraesCS6B01G255900 chr6B_459813256 chr6B 459813256 C C T T 4 missense_variant MODERATE transcript unique_Triplet 459811484 459814876 3393 4 0.117889773062187 RFvsST 111809 720561207 720449399 no 486.98888762867 TraesCS6B01G256000 chr6B_460081428 chr6B 460081428 T C T C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 460081273 460088400 7128 1 0.0140291806958474 RFvsST 111809 720561207 720449399 no 134.66761695409 TraesCS6B01G256200 chr6B_460207904 chr6B 460207904 G C G C 3 intron_variant MODIFIER transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460209964 chr6B 460209964 A G A G 3 missense_variant MODERATE transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460207350 chr6B 460207350 A G A G 3 missense_variant MODERATE transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460209450 chr6B 460209450 G A G A 3 missense_variant MODERATE transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460207349 chr6B 460207349 G T G T 3 synonymous_variant LOW transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460206901 chr6B 460206901 C C A A 4 missense_variant MODERATE transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460207906 chr6B 460207906 C T C T 3 intron_variant MODIFIER transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460209961 chr6B 460209961 G A G A 3 missense_variant MODERATE transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256200 chr6B_460209998 chr6B 460209998 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460206606 460209974 3369 9 0.267141585040071 RFvsST 111809 720561207 720449399 no 214.418921985535 TraesCS6B01G256400 chr6B_460493109 chr6B 460493109 T A T A 3 missense_variant MODERATE transcript unique_Triplet 460489983 460505164 15182 1 0.00658674746410223 RFvsST 111809 720561207 720449399 no 53.6897639545463 TraesCS6B01G256700 chr6B_461266368 chr6B 461266368 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 461266298 461269732 3435 1 0.0291120815138282 RFvsST 111809 720561207 720449399 no 324.500541717998 TraesCS6B01G257600 chr6B_462133395 chr6B 462133395 T T C C 4 synonymous_variant LOW transcript unique_Triplet 462128655 462133452 4798 3 0.0625260525218841 RFvsST 111809 720561207 720449399 no 418.291384407044 TraesCS6B01G257600 chr6B_462128625 chr6B 462128625 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 462128655 462133452 4798 3 0.0625260525218841 RFvsST 111809 720561207 720449399 no 418.291384407044 TraesCS6B01G257600 chr6B_462128624 chr6B 462128624 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 462128655 462133452 4798 3 0.0625260525218841 RFvsST 111809 720561207 720449399 no 418.291384407044 TraesCS6B01G257800 chr6B_462149542 chr6B 462149542 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 462148520 462149515 996 2 0.200803212851406 RFvsST 111809 720561207 720449399 no 156.416935917429 TraesCS6B01G257800 chr6B_462149479 chr6B 462149479 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 462148520 462149515 996 2 0.200803212851406 RFvsST 111809 720561207 720449399 no 156.416935917429 TraesCS6B01G257900 chr6B_462165423 chr6B 462165423 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 462157331 462162591 5261 2 0.0380155863904201 RFvsST 111809 720561207 720449399 no 308.519695471853 TraesCS6B01G257900 chr6B_462165466 chr6B 462165466 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 462157331 462162591 5261 2 0.0380155863904201 RFvsST 111809 720561207 720449399 no 308.519695471853 TraesCS6B01G258000 chr6B_463370008 chr6B 463370008 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 463370144 463374815 4672 3 0.0642123287671233 RFvsST 111809 720561207 720449399 no 60.2566701886522 TraesCS6B01G258000 chr6B_463374029 chr6B 463374029 C C T T 4 missense_variant MODERATE transcript non_Triplet 463370144 463374815 4672 3 0.0642123287671233 RFvsST 111809 720561207 720449399 no 60.2566701886522 TraesCS6B01G258000 chr6B_463373924 chr6B 463373924 C C T T 4 missense_variant MODERATE transcript non_Triplet 463370144 463374815 4672 3 0.0642123287671233 RFvsST 111809 720561207 720449399 no 60.2566701886522 TraesCS6B01G258500 chr6B_465677092 chr6B 465677092 A A G G 4 synonymous_variant LOW transcript non_Triplet 465675366 465679362 3997 1 0.0250187640730548 RFvsST 111809 720561207 720449399 no 1478.10500674012 TraesCS6B01G258800 chr6B_466697491 chr6B 466697491 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 466695618 466698080 2463 2 0.0812017864393017 RFvsST 111809 720561207 720449399 no 75.3408998965235 TraesCS6B01G258800 chr6B_466697401 chr6B 466697401 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 466695618 466698080 2463 2 0.0812017864393017 RFvsST 111809 720561207 720449399 no 75.3408998965235 TraesCS6B01G259400 chr6B_468736265 chr6B 468736265 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 468732137 468736261 4125 2 0.0484848484848485 RFvsST 111809 720561207 720449399 no 267.496998370181 TraesCS6B01G259400 chr6B_468735251 chr6B 468735251 G G C C 4 synonymous_variant LOW transcript non_Triplet 468732137 468736261 4125 2 0.0484848484848485 RFvsST 111809 720561207 720449399 no 267.496998370181 TraesCS6B01G259500 chr6B_469077011 chr6B 469077011 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 469073569 469077172 3604 4 0.110987791342952 RFvsST 111809 720561207 720449399 no 40.0533904945859 TraesCS6B01G259500 chr6B_469078588 chr6B 469078588 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 469073569 469077172 3604 4 0.110987791342952 RFvsST 111809 720561207 720449399 no 40.0533904945859 TraesCS6B01G259500 chr6B_469074283 chr6B 469074283 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 469073569 469077172 3604 4 0.110987791342952 RFvsST 111809 720561207 720449399 no 40.0533904945859 TraesCS6B01G259500 chr6B_469073433 chr6B 469073433 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 469073569 469077172 3604 4 0.110987791342952 RFvsST 111809 720561207 720449399 no 40.0533904945859 TraesCS6B01G259600 chr6B_469285559 chr6B 469285559 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 469285676 469302917 17242 2 0.0115995824150331 RFvsST 111809 720561207 720449399 no 171.100429491267 TraesCS6B01G259600 chr6B_469285339 chr6B 469285339 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 469285676 469302917 17242 2 0.0115995824150331 RFvsST 111809 720561207 720449399 no 171.100429491267 TraesCS6B01G260100 chr6B_470786343 chr6B 470786343 C C T T 4 missense_variant MODERATE transcript unique_Triplet 470786052 470795318 9267 1 0.0107909787417719 RFvsST 111809 720561207 720449399 no 1064.32188233388 TraesCS6B01G260200 chr6B_470800920 chr6B 470800920 T T A A 4 missense_variant MODERATE transcript unique_Triplet 470800748 470802668 1921 3 0.156168662155128 RFvsST 111809 720561207 720449399 no 32.5705471573243 TraesCS6B01G260200 chr6B_470800942 chr6B 470800942 T T C C 4 missense_variant MODERATE transcript unique_Triplet 470800748 470802668 1921 3 0.156168662155128 RFvsST 111809 720561207 720449399 no 32.5705471573243 TraesCS6B01G260200 chr6B_470800944 chr6B 470800944 A A G G 4 missense_variant MODERATE transcript unique_Triplet 470800748 470802668 1921 3 0.156168662155128 RFvsST 111809 720561207 720449399 no 32.5705471573243 TraesCS6B01G260400 chr6B_470826033 chr6B 470826033 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 470822368 470825197 2830 1 0.0353356890459364 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G260700 chr6B_470913637 chr6B 470913637 T T C C 4 missense_variant MODERATE transcript non_Triplet 470913623 470917122 3500 2 0.0571428571428571 RFvsST 111809 720561207 720449399 no 171.833469636394 TraesCS6B01G260700 chr6B_470914665 chr6B 470914665 A A C C 4 missense_variant MODERATE transcript non_Triplet 470913623 470917122 3500 2 0.0571428571428571 RFvsST 111809 720561207 720449399 no 171.833469636394 TraesCS6B01G260800 chr6B_470920654 chr6B 470920654 A A G G 4 missense_variant MODERATE transcript non_Triplet 470918657 470921934 3278 1 0.0305064063453325 RFvsST 111809 720561207 720449399 no 401.501437644466 TraesCS6B01G260900 chr6B_470922081 chr6B 470922081 A A T T 4 missense_variant MODERATE transcript non_Triplet 470921987 470922172 186 1 0.537634408602151 RFvsST 111809 720561207 720449399 no 108.606220092984 TraesCS6B01G261700 chr6B_471313692 chr6B 471313692 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 471306898 471313912 7015 1 0.0142551674982181 RFvsST 111809 720561207 720449399 no 471.959270502658 TraesCS6B01G261900 chr6B_471629779 chr6B 471629779 G G A A 4 synonymous_variant LOW transcript unique_Triplet 471628900 471630865 1966 2 0.101729399796541 RFvsST 111809 720561207 720449399 no 412.92843392777 TraesCS6B01G261900 chr6B_471628207 chr6B 471628207 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 471628900 471630865 1966 2 0.101729399796541 RFvsST 111809 720561207 720449399 no 412.92843392777 TraesCS6B01G262300 chr6B_472609840 chr6B 472609840 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 472605110 472608720 3611 3 0.083079479368596 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G262300 chr6B_472610001 chr6B 472610001 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 472605110 472608720 3611 3 0.083079479368596 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G262300 chr6B_472606571 chr6B 472606571 A A G G 4 missense_variant MODERATE transcript unique_Triplet 472605110 472608720 3611 3 0.083079479368596 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G262400 chr6B_472611393 chr6B 472611393 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 472610042 472614224 4183 4 0.095625149414296 RFvsST 111809 720561207 720449399 no 361.343521819588 TraesCS6B01G262400 chr6B_472610276 chr6B 472610276 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 472610042 472614224 4183 4 0.095625149414296 RFvsST 111809 720561207 720449399 no 361.343521819588 TraesCS6B01G262400 chr6B_472613969 chr6B 472613969 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 472610042 472614224 4183 4 0.095625149414296 RFvsST 111809 720561207 720449399 no 361.343521819588 TraesCS6B01G262400 chr6B_472610525 chr6B 472610525 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 472610042 472614224 4183 4 0.095625149414296 RFvsST 111809 720561207 720449399 no 361.343521819588 TraesCS6B01G262500 chr6B_472709617 chr6B 472709617 A A G G 4 missense_variant MODERATE transcript unique_Triplet 472708690 472709907 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 87.9951666893934 TraesCS6B01G262500 chr6B_472709151 chr6B 472709151 G G C C 4 missense_variant MODERATE transcript unique_Triplet 472708690 472709907 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 87.9951666893934 TraesCS6B01G262500 chr6B_472709497 chr6B 472709497 C C T T 4 synonymous_variant LOW transcript unique_Triplet 472708690 472709907 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 87.9951666893934 TraesCS6B01G264000 chr6B_475661216 chr6B 475661216 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264000 chr6B_475661377 chr6B 475661377 T G T G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264000 chr6B_475651746 chr6B 475651746 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264000 chr6B_475661047 chr6B 475661047 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264000 chr6B_475660895 chr6B 475660895 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264000 chr6B_475661315 chr6B 475661315 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 475651947 475660872 8926 6 0.0672193591754425 RFvsST 111809 720561207 720449399 no 124.170014667929 TraesCS6B01G264100 chr6B_475699454 chr6B 475699454 G A G A 3 synonymous_variant LOW transcript unique_Triplet 475699320 475725789 26470 1 0.00377786173026067 RFvsST 111809 720561207 720449399 no 30.7455384015486 TraesCS6B01G264200 chr6B_475725896 chr6B 475725896 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 475730869 475732176 1308 1 0.0764525993883792 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G264500 chr6B_476110552 chr6B 476110552 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 476110268 476110993 726 1 0.137741046831956 RFvsST 111809 720561207 720449399 no 43.2844939186635 TraesCS6B01G265200 chr6B_476841108 chr6B 476841108 G A G A 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 476841042 476843661 2620 1 0.0381679389312977 RFvsST 111809 720561207 720449399 no 69.5141054653905 TraesCS6B01G265700 chr6B_477796264 chr6B 477796264 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 477791554 477793616 2063 2 0.0969461948618517 RFvsST 111809 720561207 720449399 no 17.0584803551702 TraesCS6B01G265700 chr6B_477792425 chr6B 477792425 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 477791554 477793616 2063 2 0.0969461948618517 RFvsST 111809 720561207 720449399 no 17.0584803551702 TraesCS6B01G266100 chr6B_478475067 chr6B 478475067 G T G T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 478475285 478480077 4793 2 0.0417275192989777 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G266100 chr6B_478475377 chr6B 478475377 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 478475285 478480077 4793 2 0.0417275192989777 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G266900 chr6B_480376599 chr6B 480376599 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 480377854 480379971 2118 1 0.0472143531633617 RFvsST 111809 720561207 720449399 no 6.39974896937152 TraesCS6B01G267000 chr6B_480387983 chr6B 480387983 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 480381822 480387911 6090 1 0.0164203612479475 RFvsST 111809 720561207 720449399 no 6.46351190136838 TraesCS6B01G267300 chr6B_480834693 chr6B 480834693 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 480833253 480836327 3075 3 0.0975609756097561 RFvsST 111809 720561207 720449399 no 96.7515622613069 TraesCS6B01G267300 chr6B_480833804 chr6B 480833804 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 480833253 480836327 3075 3 0.0975609756097561 RFvsST 111809 720561207 720449399 no 96.7515622613069 TraesCS6B01G267300 chr6B_480833568 chr6B 480833568 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 480833253 480836327 3075 3 0.0975609756097561 RFvsST 111809 720561207 720449399 no 96.7515622613069 TraesCS6B01G267600 chr6B_481267020 chr6B 481267020 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 481267219 481273310 6092 2 0.0328299409061064 RFvsST 111809 720561207 720449399 no 177.708613602784 TraesCS6B01G267600 chr6B_481267225 chr6B 481267225 C T C T 3 synonymous_variant LOW transcript unique_Triplet 481267219 481273310 6092 2 0.0328299409061064 RFvsST 111809 720561207 720449399 no 177.708613602784 TraesCS6B01G267800 chr6B_481402417 chr6B 481402417 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 481401025 481404132 3108 2 0.0643500643500644 RFvsST 111809 720561207 720449399 no 199.210849882982 TraesCS6B01G267800 chr6B_481403386 chr6B 481403386 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 481401025 481404132 3108 2 0.0643500643500644 RFvsST 111809 720561207 720449399 no 199.210849882982 TraesCS6B01G267900 chr6B_481471050 chr6B 481471050 T G T G 3 synonymous_variant LOW transcript unique_Triplet 481464113 481472011 7899 5 0.063299151791366 RFvsST 111809 720561207 720449399 no 40.233364186497 TraesCS6B01G267900 chr6B_481471670 chr6B 481471670 C T C T 3 synonymous_variant LOW transcript unique_Triplet 481464113 481472011 7899 5 0.063299151791366 RFvsST 111809 720561207 720449399 no 40.233364186497 TraesCS6B01G267900 chr6B_481470845 chr6B 481470845 A G A G 3 synonymous_variant LOW transcript unique_Triplet 481464113 481472011 7899 5 0.063299151791366 RFvsST 111809 720561207 720449399 no 40.233364186497 TraesCS6B01G267900 chr6B_481463896 chr6B 481463896 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 481464113 481472011 7899 5 0.063299151791366 RFvsST 111809 720561207 720449399 no 40.233364186497 TraesCS6B01G267900 chr6B_481472071 chr6B 481472071 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 481464113 481472011 7899 5 0.063299151791366 RFvsST 111809 720561207 720449399 no 40.233364186497 TraesCS6B01G268200 chr6B_481855711 chr6B 481855711 A C A C 3 synonymous_variant LOW transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268200 chr6B_481863585 chr6B 481863585 A G A G 3 synonymous_variant LOW transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268200 chr6B_481861749 chr6B 481861749 G C G C 3 missense_variant MODERATE transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268200 chr6B_481855456 chr6B 481855456 C G C G 3 missense_variant MODERATE transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268200 chr6B_481856964 chr6B 481856964 T C T C 3 missense_variant MODERATE transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268200 chr6B_481855179 chr6B 481855179 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 481854923 481865362 10440 6 0.0574712643678161 RFvsST 111809 720561207 720449399 no 224.312692939359 TraesCS6B01G268900 chr6B_483608431 chr6B 483608431 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 483603681 483608385 4705 2 0.0425079702444208 RFvsST 111809 720561207 720449399 no 35.0099397788742 TraesCS6B01G268900 chr6B_483603493 chr6B 483603493 C A C A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 483603681 483608385 4705 2 0.0425079702444208 RFvsST 111809 720561207 720449399 no 35.0099397788742 TraesCS6B01G269100 chr6B_484533496 chr6B 484533496 A G A G 3 synonymous_variant LOW transcript unique_Triplet 484525873 484533750 7878 1 0.0126935770500127 RFvsST 111809 720561207 720449399 no 331.397243432627 TraesCS6B01G269200 chr6B_484986423 chr6B 484986423 C T C T 3 missense_variant MODERATE transcript unique_Triplet 484980638 484986628 5991 1 0.0166917042230012 RFvsST 111809 720561207 720449399 no 40.2452829562589 TraesCS6B01G269700 chr6B_485538568 chr6B 485538568 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 485537128 485542736 5609 1 0.0178284899269032 RFvsST 111809 720561207 720449399 no 86.3995500879051 TraesCS6B01G269900 chr6B_485870966 chr6B 485870966 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 485869372 485873774 4403 1 0.0227117874176698 RFvsST 111809 720561207 720449399 no 75.4793867859186 TraesCS6B01G270000 chr6B_485873784 chr6B 485873784 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 485875514 485875792 279 2 0.716845878136201 RFvsST 111809 720561207 720449399 no 95.8941538915416 TraesCS6B01G270000 chr6B_485873910 chr6B 485873910 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 485875514 485875792 279 2 0.716845878136201 RFvsST 111809 720561207 720449399 no 95.8941538915416 TraesCS6B01G270100 chr6B_486225321 chr6B 486225321 C G C G 3 missense_variant MODERATE transcript nonUnique_Triplet 486223536 486225624 2089 4 0.19147917663954 RFvsST 111809 720561207 720449399 no 129.414548387219 TraesCS6B01G270100 chr6B_486225000 chr6B 486225000 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 486223536 486225624 2089 4 0.19147917663954 RFvsST 111809 720561207 720449399 no 129.414548387219 TraesCS6B01G270100 chr6B_486225534 chr6B 486225534 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 486223536 486225624 2089 4 0.19147917663954 RFvsST 111809 720561207 720449399 no 129.414548387219 TraesCS6B01G270100 chr6B_486224912 chr6B 486224912 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 486223536 486225624 2089 4 0.19147917663954 RFvsST 111809 720561207 720449399 no 129.414548387219 TraesCS6B01G270200 chr6B_486513927 chr6B 486513927 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486515929 chr6B 486515929 T C T C 3 synonymous_variant LOW transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486518893 chr6B 486518893 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486513947 chr6B 486513947 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486518725 chr6B 486518725 A G A G 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486514585 chr6B 486514585 C G C G 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486515793 chr6B 486515793 G A G A 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486514252 chr6B 486514252 C C T T 4 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486515623 chr6B 486515623 A C A C 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486515837 chr6B 486515837 A C A C 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486515598 chr6B 486515598 A G A G 3 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270200 chr6B_486514120 chr6B 486514120 T T G G 4 missense_variant MODERATE transcript unique_Triplet 486513965 486518794 4830 12 0.248447204968944 RFvsST 111809 720561207 720449399 no 171.17750302515 TraesCS6B01G270600 chr6B_487541044 chr6B 487541044 T C T C 3 synonymous_variant LOW transcript unique_Triplet 487534568 487541541 6974 1 0.0143389733295096 RFvsST 111809 720561207 720449399 no 115.938828173919 TraesCS6B01G270700 chr6B_487545166 chr6B 487545166 G G C C 4 synonymous_variant LOW transcript unique_Triplet 487545041 487550916 5876 3 0.0510551395507148 RFvsST 111809 720561207 720449399 no 26.2040049638677 TraesCS6B01G270700 chr6B_487546269 chr6B 487546269 A G A G 3 missense_variant MODERATE transcript unique_Triplet 487545041 487550916 5876 3 0.0510551395507148 RFvsST 111809 720561207 720449399 no 26.2040049638677 TraesCS6B01G270700 chr6B_487550817 chr6B 487550817 A G A G 3 synonymous_variant LOW transcript unique_Triplet 487545041 487550916 5876 3 0.0510551395507148 RFvsST 111809 720561207 720449399 no 26.2040049638677 TraesCS6B01G271000 chr6B_487836907 chr6B 487836907 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 487829221 487837608 8388 1 0.0119217930376729 RFvsST 111809 720561207 720449399 no 821.257406294641 TraesCS6B01G272700 chr6B_492193353 chr6B 492193353 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 492189655 492193334 3680 1 0.0271739130434783 RFvsST 111809 720561207 720449399 no 452.390887939155 TraesCS6B01G272800 chr6B_492218852 chr6B 492218852 T C T C 3 synonymous_variant LOW transcript unique_Triplet 492218480 492219517 1038 1 0.0963391136801541 RFvsST 111809 720561207 720449399 no 506.767251932197 TraesCS6B01G278900 chr6B_504300487 chr6B 504300487 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 504301751 504306224 4474 1 0.0223513634331694 RFvsST 111809 720561207 720449399 no 170.462236708203 TraesCS6B01G282300 chr6B_508614224 chr6B 508614224 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 508608914 508612184 3271 1 0.030571690614491 RFvsST 111809 720561207 720449399 no 49.7133431713985 TraesCS6B01G282600 chr6B_509259751 chr6B 509259751 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 509257659 509259902 2244 1 0.0445632798573975 RFvsST 111809 720561207 720449399 no 63.3238964686443 TraesCS6B01G284900 chr6B_513691442 chr6B 513691442 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 513686469 513691994 5526 2 0.0361925443358668 RFvsST 111809 720561207 720449399 no 89.3086097411322 TraesCS6B01G284900 chr6B_513691437 chr6B 513691437 A C A C 3 synonymous_variant LOW transcript nonUnique_Triplet 513686469 513691994 5526 2 0.0361925443358668 RFvsST 111809 720561207 720449399 no 89.3086097411322 TraesCS6B01G286200 chr6B_515580699 chr6B 515580699 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 515577631 515578893 1263 2 0.158353127474268 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G286200 chr6B_515581743 chr6B 515581743 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 515577631 515578893 1263 2 0.158353127474268 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G287600 chr6B_518391255 chr6B 518391255 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 518386746 518391196 4451 1 0.0224668613794653 RFvsST 111809 720561207 720449399 no 69.9913409628278 TraesCS6B01G287700 chr6B_518392702 chr6B 518392702 T A T A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 518392045 518392666 622 3 0.482315112540193 RFvsST 111809 720561207 720449399 no 224.932855777405 TraesCS6B01G287700 chr6B_518392764 chr6B 518392764 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 518392045 518392666 622 3 0.482315112540193 RFvsST 111809 720561207 720449399 no 224.932855777405 TraesCS6B01G287700 chr6B_518392166 chr6B 518392166 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 518392045 518392666 622 3 0.482315112540193 RFvsST 111809 720561207 720449399 no 224.932855777405 TraesCS6B01G288500 chr6B_519404291 chr6B 519404291 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 519404159 519406681 2523 1 0.0396353547364249 RFvsST 111809 720561207 720449399 no 57.5867696989142 TraesCS6B01G288600 chr6B_519719980 chr6B 519719980 G G T T 4 5_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 519719941 519725064 5124 1 0.0195160031225605 RFvsST 111809 720561207 720449399 no 121.184360606341 TraesCS6B01G289200 chr6B_520242240 chr6B 520242240 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 520238337 520240751 2415 1 0.041407867494824 RFvsST 111809 720561207 720449399 no 77.7821916503853 TraesCS6B01G290200 chr6B_521993293 chr6B 521993293 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 521992744 521993610 867 1 0.115340253748558 RFvsST 111809 720561207 720449399 no 55.5561832014278 TraesCS6B01G290400 chr6B_522422833 chr6B 522422833 C C T T 4 missense_variant MODERATE transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G290400 chr6B_522422741 chr6B 522422741 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G290400 chr6B_522422850 chr6B 522422850 G G A A 4 missense_variant MODERATE transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G290400 chr6B_522422783 chr6B 522422783 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G290400 chr6B_522422928 chr6B 522422928 C C A A 4 missense_variant MODERATE transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G290400 chr6B_522422749 chr6B 522422749 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 522422448 522425250 2803 6 0.214056368176953 RFvsST 111809 720561207 720449399 no 121.707165319352 TraesCS6B01G291100 chr6B_523350455 chr6B 523350455 G G A A 4 missense_variant MODERATE transcript unique_Triplet 523342514 523352599 10086 1 0.0099147332936744 RFvsST 111809 720561207 720449399 no 142.474965123373 TraesCS6B01G292200 chr6B_525567381 chr6B 525567381 C A C A 3 missense_variant MODERATE transcript unique_Triplet 525557967 525567728 9762 1 0.0102438024994878 RFvsST 111809 720561207 720449399 no 22.7984680419113 TraesCS6B01G292700 chr6B_526476869 chr6B 526476869 C T C T 3 synonymous_variant LOW transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G292700 chr6B_526481172 chr6B 526481172 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G292700 chr6B_526480684 chr6B 526480684 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G292700 chr6B_526481458 chr6B 526481458 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G292700 chr6B_526475617 chr6B 526475617 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G292700 chr6B_526477211 chr6B 526477211 T T C C 4 synonymous_variant LOW transcript non_Triplet 526476057 526478919 2863 6 0.209570380719525 RFvsST 111809 720561207 720449399 no 153.448552360115 TraesCS6B01G293900 chr6B_528090750 chr6B 528090750 G G T T 4 missense_variant MODERATE transcript unique_Triplet 528085568 528091762 6195 1 0.0161420500403551 RFvsST 111809 720561207 720449399 no 39.0165635320149 TraesCS6B01G294000 chr6B_528284143 chr6B 528284143 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 528281976 528284326 2351 2 0.0850701829008932 RFvsST 111809 720561207 720449399 no 408.242759995363 TraesCS6B01G294000 chr6B_528284887 chr6B 528284887 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 528281976 528284326 2351 2 0.0850701829008932 RFvsST 111809 720561207 720449399 no 408.242759995363 TraesCS6B01G294100 chr6B_528287796 chr6B 528287796 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 528285009 528288069 3061 3 0.0980071871937275 RFvsST 111809 720561207 720449399 no 198.452552959332 TraesCS6B01G294100 chr6B_528285988 chr6B 528285988 G C G C 3 synonymous_variant LOW transcript nonUnique_Triplet 528285009 528288069 3061 3 0.0980071871937275 RFvsST 111809 720561207 720449399 no 198.452552959332 TraesCS6B01G294100 chr6B_528288019 chr6B 528288019 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 528285009 528288069 3061 3 0.0980071871937275 RFvsST 111809 720561207 720449399 no 198.452552959332 TraesCS6B01G294200 chr6B_528331189 chr6B 528331189 G T G T 3 missense_variant MODERATE transcript unique_Triplet 528329694 528331538 1845 5 0.2710027100271 RFvsST 111809 720561207 720449399 no 558.542594610412 TraesCS6B01G294200 chr6B_528329673 chr6B 528329673 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 528329694 528331538 1845 5 0.2710027100271 RFvsST 111809 720561207 720449399 no 558.542594610412 TraesCS6B01G294200 chr6B_528329798 chr6B 528329798 T C T C 3 missense_variant MODERATE transcript unique_Triplet 528329694 528331538 1845 5 0.2710027100271 RFvsST 111809 720561207 720449399 no 558.542594610412 TraesCS6B01G294200 chr6B_528330495 chr6B 528330495 G A G A 3 synonymous_variant LOW transcript unique_Triplet 528329694 528331538 1845 5 0.2710027100271 RFvsST 111809 720561207 720449399 no 558.542594610412 TraesCS6B01G294200 chr6B_528330572 chr6B 528330572 T C T C 3 missense_variant MODERATE transcript unique_Triplet 528329694 528331538 1845 5 0.2710027100271 RFvsST 111809 720561207 720449399 no 558.542594610412 TraesCS6B01G294400 chr6B_528622948 chr6B 528622948 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 528621655 528621849 195 1 0.512820512820513 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G295200 chr6B_530129949 chr6B 530129949 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 530127392 530130456 3065 2 0.065252854812398 RFvsST 111809 720561207 720449399 no 60.1683834311653 TraesCS6B01G295200 chr6B_530130824 chr6B 530130824 A C A C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 530127392 530130456 3065 2 0.065252854812398 RFvsST 111809 720561207 720449399 no 60.1683834311653 TraesCS6B01G295400 chr6B_530573834 chr6B 530573834 C G C G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 530566056 530570123 4068 1 0.0245821042281219 RFvsST 111809 720561207 720449399 no 2.71643638441111 TraesCS6B01G295800 chr6B_531527658 chr6B 531527658 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 531523098 531530035 6938 1 0.0144133756125685 RFvsST 111809 720561207 720449399 no 148.295772311917 TraesCS6B01G296300 chr6B_532141650 chr6B 532141650 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532141712 532144062 2351 3 0.12760527435134 RFvsST 111809 720561207 720449399 no 58.249626621096 TraesCS6B01G296300 chr6B_532144030 chr6B 532144030 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 532141712 532144062 2351 3 0.12760527435134 RFvsST 111809 720561207 720449399 no 58.249626621096 TraesCS6B01G296300 chr6B_532141748 chr6B 532141748 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 532141712 532144062 2351 3 0.12760527435134 RFvsST 111809 720561207 720449399 no 58.249626621096 TraesCS6B01G296400 chr6B_532150282 chr6B 532150282 A T A T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532150396 chr6B 532150396 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532152187 chr6B 532152187 T G T G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532150423 chr6B 532150423 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532150254 chr6B 532150254 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532150499 chr6B 532150499 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296400 chr6B_532150227 chr6B 532150227 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 532150706 532152010 1305 7 0.53639846743295 RFvsST 111809 720561207 720449399 no 1139.60733170441 TraesCS6B01G296600 chr6B_532341692 chr6B 532341692 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 532337686 532337811 126 2 1.58730158730159 RFvsST 111809 720561207 720449399 no 26.8587069811088 TraesCS6B01G296600 chr6B_532341910 chr6B 532341910 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 532337686 532337811 126 2 1.58730158730159 RFvsST 111809 720561207 720449399 no 26.8587069811088 TraesCS6B01G300500 chr6B_538947730 chr6B 538947730 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 538947376 538952270 4895 1 0.0204290091930541 RFvsST 111809 720561207 720449399 no 322.61947749224 TraesCS6B01G301300 chr6B_539628335 chr6B 539628335 A T A T 3 missense_variant MODERATE transcript non_Triplet 539625237 539629177 3941 1 0.0253742704897234 RFvsST 111809 720561207 720449399 no 4420.98551199945 TraesCS6B01G307300 chr6B_551027880 chr6B 551027880 T T C C 4 synonymous_variant LOW transcript non_Triplet 551026164 551028060 1897 1 0.0527148128624143 RFvsST 111809 720561207 720449399 no 73.8194430549618 TraesCS6B01G307800 chr6B_551803750 chr6B 551803750 C C T T 4 missense_variant MODERATE transcript non_Triplet 551796470 551804003 7534 1 0.0132731616671091 RFvsST 111809 720561207 720449399 no 46.9717202293488 TraesCS6B01G307900 chr6B_551926516 chr6B 551926516 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551927684 chr6B 551927684 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551927839 chr6B 551927839 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551926966 chr6B 551926966 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551924927 chr6B 551924927 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551927292 chr6B 551927292 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551925370 chr6B 551925370 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G307900 chr6B_551927593 chr6B 551927593 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 551929798 551952135 22338 8 0.03581341212284 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G308200 chr6B_552243368 chr6B 552243368 T T A A 4 synonymous_variant LOW transcript unique_Triplet 552241600 552243635 2036 1 0.0491159135559921 RFvsST 111809 720561207 720449399 no 132.315510835498 TraesCS6B01G308400 chr6B_552406018 chr6B 552406018 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 552399224 552402601 3378 1 0.029603315571344 RFvsST 111809 720561207 720449399 no 103.703800079224 TraesCS6B01G308500 chr6B_552405981 chr6B 552405981 A A G G 4 missense_variant MODERATE transcript unique_Triplet 552405444 552406001 558 2 0.3584229390681 RFvsST 111809 720561207 720449399 no 54.2064139221477 TraesCS6B01G308500 chr6B_552405659 chr6B 552405659 C C A A 4 synonymous_variant LOW transcript unique_Triplet 552405444 552406001 558 2 0.3584229390681 RFvsST 111809 720561207 720449399 no 54.2064139221477 TraesCS6B01G309000 chr6B_553373868 chr6B 553373868 T T A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 553372774 553373178 405 2 0.493827160493827 RFvsST 111809 720561207 720449399 no 31.6123126064702 TraesCS6B01G309000 chr6B_553372739 chr6B 553372739 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 553372774 553373178 405 2 0.493827160493827 RFvsST 111809 720561207 720449399 no 31.6123126064702 TraesCS6B01G309800 chr6B_555292933 chr6B 555292933 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 555290005 555292819 2815 2 0.0710479573712256 RFvsST 111809 720561207 720449399 no 98.6516079076511 TraesCS6B01G309800 chr6B_555292947 chr6B 555292947 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 555290005 555292819 2815 2 0.0710479573712256 RFvsST 111809 720561207 720449399 no 98.6516079076511 TraesCS6B01G310300 chr6B_555556939 chr6B 555556939 C C T T 4 synonymous_variant LOW transcript unique_Triplet 555556705 555557295 591 1 0.169204737732657 RFvsST 111809 720561207 720449399 no 28.3723752455311 TraesCS6B01G310400 chr6B_555805683 chr6B 555805683 C C A A 4 missense_variant MODERATE transcript unique_Triplet 555805076 555805735 660 1 0.151515151515152 RFvsST 111809 720561207 720449399 no 58.0901513225035 TraesCS6B01G310500 chr6B_555855740 chr6B 555855740 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 555855913 555859423 3511 3 0.0854457419538593 RFvsST 111809 720561207 720449399 no 227.257973688016 TraesCS6B01G310500 chr6B_555857039 chr6B 555857039 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 555855913 555859423 3511 3 0.0854457419538593 RFvsST 111809 720561207 720449399 no 227.257973688016 TraesCS6B01G310500 chr6B_555855451 chr6B 555855451 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 555855913 555859423 3511 3 0.0854457419538593 RFvsST 111809 720561207 720449399 no 227.257973688016 TraesCS6B01G310700 chr6B_556495390 chr6B 556495390 A A G G 4 missense_variant MODERATE transcript unique_Triplet 556490258 556495581 5324 4 0.0751314800901578 RFvsST 111809 720561207 720449399 no 371.674540492118 TraesCS6B01G310700 chr6B_556491270 chr6B 556491270 G G A A 4 synonymous_variant LOW transcript unique_Triplet 556490258 556495581 5324 4 0.0751314800901578 RFvsST 111809 720561207 720449399 no 371.674540492118 TraesCS6B01G310700 chr6B_556492212 chr6B 556492212 G G C C 4 splice_acceptor_variant&intron_variant HIGH transcript unique_Triplet 556490258 556495581 5324 4 0.0751314800901578 RFvsST 111809 720561207 720449399 no 371.674540492118 TraesCS6B01G310700 chr6B_556492110 chr6B 556492110 A A G G 4 synonymous_variant LOW transcript unique_Triplet 556490258 556495581 5324 4 0.0751314800901578 RFvsST 111809 720561207 720449399 no 371.674540492118 TraesCS6B01G311000 chr6B_557416414 chr6B 557416414 C C A A 4 synonymous_variant LOW transcript nonUnique_Triplet 557416100 557423696 7597 4 0.0526523627747795 RFvsST 111809 720561207 720449399 no 194.633954296447 TraesCS6B01G311000 chr6B_557422886 chr6B 557422886 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 557416100 557423696 7597 4 0.0526523627747795 RFvsST 111809 720561207 720449399 no 194.633954296447 TraesCS6B01G311000 chr6B_557422648 chr6B 557422648 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 557416100 557423696 7597 4 0.0526523627747795 RFvsST 111809 720561207 720449399 no 194.633954296447 TraesCS6B01G311000 chr6B_557423113 chr6B 557423113 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 557416100 557423696 7597 4 0.0526523627747795 RFvsST 111809 720561207 720449399 no 194.633954296447 TraesCS6B01G311700 chr6B_558910536 chr6B 558910536 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 558911904 558912467 564 5 0.886524822695036 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G311700 chr6B_558908331 chr6B 558908331 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 558911904 558912467 564 5 0.886524822695036 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G311700 chr6B_558910350 chr6B 558910350 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 558911904 558912467 564 5 0.886524822695036 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G311700 chr6B_558910775 chr6B 558910775 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 558911904 558912467 564 5 0.886524822695036 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G311700 chr6B_558917157 chr6B 558917157 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 558911904 558912467 564 5 0.886524822695036 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G312000 chr6B_559038817 chr6B 559038817 G G A A 4 synonymous_variant LOW transcript non_Triplet 559038673 559042692 4020 1 0.0248756218905473 RFvsST 111809 720561207 720449399 no 178.277563458786 TraesCS6B01G312200 chr6B_559356599 chr6B 559356599 G G C C 4 synonymous_variant LOW transcript non_Triplet 559355454 559357229 1776 5 0.281531531531532 RFvsST 111809 720561207 720449399 no 1103.83810565137 TraesCS6B01G312200 chr6B_559355610 chr6B 559355610 C C T T 4 synonymous_variant LOW transcript non_Triplet 559355454 559357229 1776 5 0.281531531531532 RFvsST 111809 720561207 720449399 no 1103.83810565137 TraesCS6B01G312200 chr6B_559355572 chr6B 559355572 T T C C 4 missense_variant MODERATE transcript non_Triplet 559355454 559357229 1776 5 0.281531531531532 RFvsST 111809 720561207 720449399 no 1103.83810565137 TraesCS6B01G312200 chr6B_559357105 chr6B 559357105 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 559355454 559357229 1776 5 0.281531531531532 RFvsST 111809 720561207 720449399 no 1103.83810565137 TraesCS6B01G312200 chr6B_559356967 chr6B 559356967 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 559355454 559357229 1776 5 0.281531531531532 RFvsST 111809 720561207 720449399 no 1103.83810565137 TraesCS6B01G313500 chr6B_561289378 chr6B 561289378 C C T T 4 synonymous_variant LOW transcript unique_Triplet 561287606 561293170 5565 2 0.0359389038634322 RFvsST 111809 720561207 720449399 no 57.5327751075196 TraesCS6B01G313500 chr6B_561289950 chr6B 561289950 G G A A 4 missense_variant MODERATE transcript unique_Triplet 561287606 561293170 5565 2 0.0359389038634322 RFvsST 111809 720561207 720449399 no 57.5327751075196 TraesCS6B01G313900 chr6B_561700910 chr6B 561700910 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 561700932 561702905 1974 2 0.101317122593718 RFvsST 111809 720561207 720449399 no 323.247429653027 TraesCS6B01G313900 chr6B_561700126 chr6B 561700126 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 561700932 561702905 1974 2 0.101317122593718 RFvsST 111809 720561207 720449399 no 323.247429653027 TraesCS6B01G314300 chr6B_561839188 chr6B 561839188 G G C C 4 missense_variant MODERATE transcript non_Triplet 561835717 561841643 5927 1 0.0168719419605197 RFvsST 111809 720561207 720449399 no 77.1402129053933 TraesCS6B01G314700 chr6B_562563787 chr6B 562563787 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 562558550 562563575 5026 1 0.0198965380023876 RFvsST 111809 720561207 720449399 no 33.9173037633087 TraesCS6B01G314800 chr6B_562597211 chr6B 562597211 T T C C 4 missense_variant MODERATE transcript unique_Triplet 562592000 562600332 8333 3 0.0360014400576023 RFvsST 111809 720561207 720449399 no 214.518899195539 TraesCS6B01G314800 chr6B_562596443 chr6B 562596443 A A C C 4 missense_variant MODERATE transcript unique_Triplet 562592000 562600332 8333 3 0.0360014400576023 RFvsST 111809 720561207 720449399 no 214.518899195539 TraesCS6B01G314800 chr6B_562598032 chr6B 562598032 C C A A 4 missense_variant MODERATE transcript unique_Triplet 562592000 562600332 8333 3 0.0360014400576023 RFvsST 111809 720561207 720449399 no 214.518899195539 TraesCS6B01G315600 chr6B_563485399 chr6B 563485399 G G A A 4 synonymous_variant LOW transcript unique_Triplet 563480382 563485683 5302 2 0.0377216144851 RFvsST 111809 720561207 720449399 no 96.9024949800492 TraesCS6B01G315600 chr6B_563487567 chr6B 563487567 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 563480382 563485683 5302 2 0.0377216144851 RFvsST 111809 720561207 720449399 no 96.9024949800492 TraesCS6B01G315700 chr6B_563487766 chr6B 563487766 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 563487605 563492339 4735 3 0.0633579725448786 RFvsST 111809 720561207 720449399 no 387.464542554514 TraesCS6B01G315700 chr6B_563489560 chr6B 563489560 A A T T 4 missense_variant MODERATE transcript unique_Triplet 563487605 563492339 4735 3 0.0633579725448786 RFvsST 111809 720561207 720449399 no 387.464542554514 TraesCS6B01G315700 chr6B_563487827 chr6B 563487827 G G A A 4 synonymous_variant LOW transcript unique_Triplet 563487605 563492339 4735 3 0.0633579725448786 RFvsST 111809 720561207 720449399 no 387.464542554514 TraesCS6B01G315800 chr6B_563996366 chr6B 563996366 G G C C 4 synonymous_variant LOW transcript unique_Triplet 563995774 564000154 4381 3 0.0684775165487332 RFvsST 111809 720561207 720449399 no 92.128424277369 TraesCS6B01G315800 chr6B_564000329 chr6B 564000329 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 563995774 564000154 4381 3 0.0684775165487332 RFvsST 111809 720561207 720449399 no 92.128424277369 TraesCS6B01G315800 chr6B_563999954 chr6B 563999954 T T C C 4 synonymous_variant LOW transcript unique_Triplet 563995774 564000154 4381 3 0.0684775165487332 RFvsST 111809 720561207 720449399 no 92.128424277369 TraesCS6B01G317100 chr6B_564993802 chr6B 564993802 A A C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 564992876 564993745 870 1 0.114942528735632 RFvsST 111809 720561207 720449399 no 1765.42659783946 TraesCS6B01G317400 chr6B_565393606 chr6B 565393606 C C T T 4 synonymous_variant LOW transcript unique_Triplet 565393388 565395328 1941 4 0.20607934054611 RFvsST 111809 720561207 720449399 no 2867.74663353926 TraesCS6B01G317400 chr6B_565388908 chr6B 565388908 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 565393388 565395328 1941 4 0.20607934054611 RFvsST 111809 720561207 720449399 no 2867.74663353926 TraesCS6B01G317400 chr6B_565388837 chr6B 565388837 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 565393388 565395328 1941 4 0.20607934054611 RFvsST 111809 720561207 720449399 no 2867.74663353926 TraesCS6B01G317400 chr6B_565388767 chr6B 565388767 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 565393388 565395328 1941 4 0.20607934054611 RFvsST 111809 720561207 720449399 no 2867.74663353926 TraesCS6B01G317500 chr6B_565418803 chr6B 565418803 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 565418040 565418878 839 1 0.119189511323004 RFvsST 111809 720561207 720449399 no 495.41875223418 TraesCS6B01G318800 chr6B_566537219 chr6B 566537219 G G A A 4 synonymous_variant LOW transcript unique_Triplet 566536334 566537905 1572 4 0.254452926208651 RFvsST 111809 720561207 720449399 no 687.128928221104 TraesCS6B01G318800 chr6B_566541021 chr6B 566541021 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 566536334 566537905 1572 4 0.254452926208651 RFvsST 111809 720561207 720449399 no 687.128928221104 TraesCS6B01G318800 chr6B_566536673 chr6B 566536673 A A G G 4 synonymous_variant LOW transcript unique_Triplet 566536334 566537905 1572 4 0.254452926208651 RFvsST 111809 720561207 720449399 no 687.128928221104 TraesCS6B01G318800 chr6B_566537405 chr6B 566537405 C C T T 4 missense_variant MODERATE transcript unique_Triplet 566536334 566537905 1572 4 0.254452926208651 RFvsST 111809 720561207 720449399 no 687.128928221104 TraesCS6B01G319000 chr6B_566554868 chr6B 566554868 C C T T 4 missense_variant MODERATE transcript unique_Triplet 566547869 566555129 7261 1 0.0137722076848919 RFvsST 111809 720561207 720449399 no 525.723875678141 TraesCS6B01G319400 chr6B_567393860 chr6B 567393860 C C T T 4 missense_variant MODERATE transcript unique_Triplet 567393839 567396629 2791 2 0.0716589036187746 RFvsST 111809 720561207 720449399 no 20.6653722449205 TraesCS6B01G319400 chr6B_567393864 chr6B 567393864 A A T T 4 missense_variant MODERATE transcript unique_Triplet 567393839 567396629 2791 2 0.0716589036187746 RFvsST 111809 720561207 720449399 no 20.6653722449205 TraesCS6B01G323400 chr6B_572393322 chr6B 572393322 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 572392396 572393760 1365 1 0.0732600732600733 RFvsST 111809 720561207 720449399 no 158.231319066622 TraesCS6B01G325900 chr6B_575329789 chr6B 575329789 G A G A 3 missense_variant MODERATE transcript unique_Triplet 575326699 575330039 3341 2 0.0598623166716552 RFvsST 111809 720561207 720449399 no 163.868553457982 TraesCS6B01G325900 chr6B_575327046 chr6B 575327046 G A G A 3 synonymous_variant LOW transcript unique_Triplet 575326699 575330039 3341 2 0.0598623166716552 RFvsST 111809 720561207 720449399 no 163.868553457982 TraesCS6B01G326000 chr6B_575330855 chr6B 575330855 A A C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 575330701 575331403 703 1 0.142247510668563 RFvsST 111809 720561207 720449399 no 53.3756473460994 TraesCS6B01G326200 chr6B_575638302 chr6B 575638302 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 575638321 575638919 599 1 0.1669449081803 RFvsST 111809 720561207 720449399 no 575.42377402053 TraesCS6B01G326500 chr6B_576039873 chr6B 576039873 A G A G 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 576039413 576041110 1698 3 0.176678445229682 RFvsST 111809 720561207 720449399 no 40.0234287599072 TraesCS6B01G326500 chr6B_576041147 chr6B 576041147 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 576039413 576041110 1698 3 0.176678445229682 RFvsST 111809 720561207 720449399 no 40.0234287599072 TraesCS6B01G326500 chr6B_576040835 chr6B 576040835 T C T C 3 synonymous_variant LOW transcript non_Triplet 576039413 576041110 1698 3 0.176678445229682 RFvsST 111809 720561207 720449399 no 40.0234287599072 TraesCS6B01G326600 chr6B_576206303 chr6B 576206303 C T C T 3 synonymous_variant LOW transcript unique_Triplet 576206300 576207736 1437 4 0.278357689631176 RFvsST 111809 720561207 720449399 no 337.571914882676 TraesCS6B01G326600 chr6B_576206320 chr6B 576206320 G A G A 3 missense_variant MODERATE transcript unique_Triplet 576206300 576207736 1437 4 0.278357689631176 RFvsST 111809 720561207 720449399 no 337.571914882676 TraesCS6B01G326600 chr6B_576207471 chr6B 576207471 A G A G 3 missense_variant MODERATE transcript unique_Triplet 576206300 576207736 1437 4 0.278357689631176 RFvsST 111809 720561207 720449399 no 337.571914882676 TraesCS6B01G326600 chr6B_576206096 chr6B 576206096 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 576206300 576207736 1437 4 0.278357689631176 RFvsST 111809 720561207 720449399 no 337.571914882676 TraesCS6B01G327100 chr6B_576813266 chr6B 576813266 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 576812680 576813278 599 4 0.667779632721202 RFvsST 111809 720561207 720449399 no 329.61823499644 TraesCS6B01G327100 chr6B_576813121 chr6B 576813121 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 576812680 576813278 599 4 0.667779632721202 RFvsST 111809 720561207 720449399 no 329.61823499644 TraesCS6B01G327100 chr6B_576812883 chr6B 576812883 A C A C 3 synonymous_variant LOW transcript unique_Triplet 576812680 576813278 599 4 0.667779632721202 RFvsST 111809 720561207 720449399 no 329.61823499644 TraesCS6B01G327100 chr6B_576813317 chr6B 576813317 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 576812680 576813278 599 4 0.667779632721202 RFvsST 111809 720561207 720449399 no 329.61823499644 TraesCS6B01G327300 chr6B_576854640 chr6B 576854640 C G C G 3 synonymous_variant LOW transcript unique_Triplet 576850365 576854700 4336 3 0.0691881918819188 RFvsST 111809 720561207 720449399 no 144.515003667858 TraesCS6B01G327300 chr6B_576857989 chr6B 576857989 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 576850365 576854700 4336 3 0.0691881918819188 RFvsST 111809 720561207 720449399 no 144.515003667858 TraesCS6B01G327300 chr6B_576854718 chr6B 576854718 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 576850365 576854700 4336 3 0.0691881918819188 RFvsST 111809 720561207 720449399 no 144.515003667858 TraesCS6B01G327400 chr6B_577171019 chr6B 577171019 C T C T 3 missense_variant MODERATE transcript unique_Triplet 577170336 577174984 4649 3 0.0645300064530007 RFvsST 111809 720561207 720449399 no 193.333320157166 TraesCS6B01G327400 chr6B_577174706 chr6B 577174706 C C T T 4 missense_variant MODERATE transcript unique_Triplet 577170336 577174984 4649 3 0.0645300064530007 RFvsST 111809 720561207 720449399 no 193.333320157166 TraesCS6B01G327400 chr6B_577170680 chr6B 577170680 T A T A 3 missense_variant MODERATE transcript unique_Triplet 577170336 577174984 4649 3 0.0645300064530007 RFvsST 111809 720561207 720449399 no 193.333320157166 TraesCS6B01G330100 chr6B_579530321 chr6B 579530321 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 579530285 579532308 2024 1 0.0494071146245059 RFvsST 111809 720561207 720449399 no 271.285183850638 TraesCS6B01G330700 chr6B_580376300 chr6B 580376300 G A G A 3 synonymous_variant LOW transcript non_Triplet 580375675 580376326 652 1 0.153374233128834 RFvsST 111809 720561207 720449399 no 27.2334241422464 TraesCS6B01G331000 chr6B_581867062 chr6B 581867062 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 581867327 581868328 1002 1 0.0998003992015968 RFvsST 111809 720561207 720449399 no 2201.93194170658 TraesCS6B01G331400 chr6B_582823808 chr6B 582823808 C C T T 4 synonymous_variant LOW transcript unique_Triplet 582822876 582825060 2185 5 0.22883295194508 RFvsST 111809 720561207 720449399 no 86.9611146507002 TraesCS6B01G331400 chr6B_582824913 chr6B 582824913 G A G A 3 synonymous_variant LOW transcript unique_Triplet 582822876 582825060 2185 5 0.22883295194508 RFvsST 111809 720561207 720449399 no 86.9611146507002 TraesCS6B01G331400 chr6B_582824969 chr6B 582824969 C T C T 3 missense_variant MODERATE transcript unique_Triplet 582822876 582825060 2185 5 0.22883295194508 RFvsST 111809 720561207 720449399 no 86.9611146507002 TraesCS6B01G331400 chr6B_582823503 chr6B 582823503 G G A A 4 synonymous_variant LOW transcript unique_Triplet 582822876 582825060 2185 5 0.22883295194508 RFvsST 111809 720561207 720449399 no 86.9611146507002 TraesCS6B01G331400 chr6B_582823107 chr6B 582823107 A A G G 4 missense_variant MODERATE transcript unique_Triplet 582822876 582825060 2185 5 0.22883295194508 RFvsST 111809 720561207 720449399 no 86.9611146507002 TraesCS6B01G331600 chr6B_582867695 chr6B 582867695 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 582865833 582867904 2072 1 0.0482625482625483 RFvsST 111809 720561207 720449399 no 8.25823462902349 TraesCS6B01G331800 chr6B_583190218 chr6B 583190218 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 583190405 583190719 315 2 0.634920634920635 RFvsST 111809 720561207 720449399 no 64.430561631165 TraesCS6B01G331800 chr6B_583190761 chr6B 583190761 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 583190405 583190719 315 2 0.634920634920635 RFvsST 111809 720561207 720449399 no 64.430561631165 TraesCS6B01G336200 chr6B_591507157 chr6B 591507157 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 591505565 591506113 549 1 0.182149362477231 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G336700 chr6B_592946348 chr6B 592946348 G G A A 4 synonymous_variant LOW transcript unique_Triplet 592944303 592946518 2216 1 0.0451263537906137 RFvsST 111809 720561207 720449399 no 38.7525288110677 TraesCS6B01G337200 chr6B_593372680 chr6B 593372680 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 593363953 593374899 10947 1 0.00913492280990226 RFvsST 111809 720561207 720449399 no 422.184395765 TraesCS6B01G337300 chr6B_593711976 chr6B 593711976 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 593711934 593714458 2525 2 0.0792079207920792 RFvsST 111809 720561207 720449399 no 149.298687211687 TraesCS6B01G337300 chr6B_593711815 chr6B 593711815 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 593711934 593714458 2525 2 0.0792079207920792 RFvsST 111809 720561207 720449399 no 149.298687211687 TraesCS6B01G337800 chr6B_594854064 chr6B 594854064 G G A A 4 missense_variant MODERATE transcript non_Triplet 594854057 594862107 8051 1 0.0124208172897777 RFvsST 111809 720561207 720449399 no 82.2717045632464 TraesCS6B01G338000 chr6B_595227965 chr6B 595227965 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 595226679 595229895 3217 1 0.0310848616723656 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G338100 chr6B_595290914 chr6B 595290914 G G A A 4 missense_variant MODERATE transcript unique_Triplet 595286288 595295615 9328 5 0.0536020583190395 RFvsST 111809 720561207 720449399 no 842.995482861986 TraesCS6B01G338100 chr6B_595286586 chr6B 595286586 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 595286288 595295615 9328 5 0.0536020583190395 RFvsST 111809 720561207 720449399 no 842.995482861986 TraesCS6B01G338100 chr6B_595291722 chr6B 595291722 T T C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 595286288 595295615 9328 5 0.0536020583190395 RFvsST 111809 720561207 720449399 no 842.995482861986 TraesCS6B01G338100 chr6B_595288719 chr6B 595288719 A G A G 3 synonymous_variant LOW transcript unique_Triplet 595286288 595295615 9328 5 0.0536020583190395 RFvsST 111809 720561207 720449399 no 842.995482861986 TraesCS6B01G338100 chr6B_595289030 chr6B 595289030 C C T T 4 missense_variant MODERATE transcript unique_Triplet 595286288 595295615 9328 5 0.0536020583190395 RFvsST 111809 720561207 720449399 no 842.995482861986 TraesCS6B01G338200 chr6B_595954145 chr6B 595954145 C C T T 4 missense_variant MODERATE transcript non_Triplet 595951076 595958426 7351 2 0.0272071826962318 RFvsST 111809 720561207 720449399 no 1527.14541962019 TraesCS6B01G338200 chr6B_595952036 chr6B 595952036 C C T T 4 synonymous_variant LOW transcript non_Triplet 595951076 595958426 7351 2 0.0272071826962318 RFvsST 111809 720561207 720449399 no 1527.14541962019 TraesCS6B01G339300 chr6B_598452370 chr6B 598452370 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 598450949 598452237 1289 1 0.0775795190069822 RFvsST 111809 720561207 720449399 no 12.8713788114976 TraesCS6B01G339400 chr6B_599066622 chr6B 599066622 T T G G 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599070559 chr6B 599070559 T T C C 4 synonymous_variant LOW transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599050176 chr6B 599050176 G G A A 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599071479 chr6B 599071479 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599049802 chr6B 599049802 G G C C 4 synonymous_variant LOW transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599053997 chr6B 599053997 A A G G 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599057239 chr6B 599057239 G G T T 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599050198 chr6B 599050198 A A G G 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599052014 chr6B 599052014 G G A A 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G339400 chr6B_599070149 chr6B 599070149 T T A A 4 missense_variant MODERATE transcript unique_Triplet 599049689 599071393 21705 10 0.046072333563695 RFvsST 111809 720561207 720449399 no 335.694568012194 TraesCS6B01G340300 chr6B_599686242 chr6B 599686242 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 599685526 599686650 1125 2 0.177777777777778 RFvsST 111809 720561207 720449399 no 280.695790553986 TraesCS6B01G340300 chr6B_599686461 chr6B 599686461 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 599685526 599686650 1125 2 0.177777777777778 RFvsST 111809 720561207 720449399 no 280.695790553986 TraesCS6B01G340400 chr6B_599693700 chr6B 599693700 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 599693475 599693714 240 1 0.416666666666667 RFvsST 111809 720561207 720449399 no 48.6454533575982 TraesCS6B01G342000 chr6B_601880850 chr6B 601880850 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 601880291 601884013 3723 1 0.02686005909213 RFvsST 111809 720561207 720449399 no 450.158446495632 TraesCS6B01G342100 chr6B_602504721 chr6B 602504721 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 602504155 602505282 1128 4 0.354609929078014 RFvsST 111809 720561207 720449399 no 127.989162569438 TraesCS6B01G342100 chr6B_602504445 chr6B 602504445 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 602504155 602505282 1128 4 0.354609929078014 RFvsST 111809 720561207 720449399 no 127.989162569438 TraesCS6B01G342100 chr6B_602505350 chr6B 602505350 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 602504155 602505282 1128 4 0.354609929078014 RFvsST 111809 720561207 720449399 no 127.989162569438 TraesCS6B01G342100 chr6B_602505283 chr6B 602505283 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 602504155 602505282 1128 4 0.354609929078014 RFvsST 111809 720561207 720449399 no 127.989162569438 TraesCS6B01G342700 chr6B_603357174 chr6B 603357174 C C A A 4 missense_variant MODERATE transcript unique_Triplet 603356238 603362220 5983 4 0.0668560922614073 RFvsST 111809 720561207 720449399 no 248.194730580085 TraesCS6B01G342700 chr6B_603356064 chr6B 603356064 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 603356238 603362220 5983 4 0.0668560922614073 RFvsST 111809 720561207 720449399 no 248.194730580085 TraesCS6B01G342700 chr6B_603355936 chr6B 603355936 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 603356238 603362220 5983 4 0.0668560922614073 RFvsST 111809 720561207 720449399 no 248.194730580085 TraesCS6B01G342700 chr6B_603363001 chr6B 603363001 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 603356238 603362220 5983 4 0.0668560922614073 RFvsST 111809 720561207 720449399 no 248.194730580085 TraesCS6B01G343900 chr6B_605800060 chr6B 605800060 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 605795519 605801478 5960 5 0.0838926174496644 RFvsST 111809 720561207 720449399 no 57.0892902721196 TraesCS6B01G343900 chr6B_605801615 chr6B 605801615 G G C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 605795519 605801478 5960 5 0.0838926174496644 RFvsST 111809 720561207 720449399 no 57.0892902721196 TraesCS6B01G343900 chr6B_605800551 chr6B 605800551 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 605795519 605801478 5960 5 0.0838926174496644 RFvsST 111809 720561207 720449399 no 57.0892902721196 TraesCS6B01G343900 chr6B_605799759 chr6B 605799759 T T G G 4 intron_variant MODIFIER transcript nonUnique_Triplet 605795519 605801478 5960 5 0.0838926174496644 RFvsST 111809 720561207 720449399 no 57.0892902721196 TraesCS6B01G343900 chr6B_605800284 chr6B 605800284 C C G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 605795519 605801478 5960 5 0.0838926174496644 RFvsST 111809 720561207 720449399 no 57.0892902721196 TraesCS6B01G344000 chr6B_606284217 chr6B 606284217 C C G G 4 missense_variant MODERATE transcript unique_Triplet 606283855 606285355 1501 3 0.199866755496336 RFvsST 111809 720561207 720449399 no 131.706400813909 TraesCS6B01G344000 chr6B_606283954 chr6B 606283954 C C T T 4 missense_variant MODERATE transcript unique_Triplet 606283855 606285355 1501 3 0.199866755496336 RFvsST 111809 720561207 720449399 no 131.706400813909 TraesCS6B01G344000 chr6B_606283785 chr6B 606283785 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606283855 606285355 1501 3 0.199866755496336 RFvsST 111809 720561207 720449399 no 131.706400813909 TraesCS6B01G344100 chr6B_606285693 chr6B 606285693 A A T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 606285921 606289018 3098 1 0.0322788896061975 RFvsST 111809 720561207 720449399 no 111.055139566631 TraesCS6B01G344500 chr6B_606963964 chr6B 606963964 A A G G 4 missense_variant MODERATE transcript unique_Triplet 606962236 606964182 1947 1 0.0513610683102209 RFvsST 111809 720561207 720449399 no 2.20991624832011 TraesCS6B01G344900 chr6B_607136725 chr6B 607136725 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 607131235 607136344 5110 1 0.0195694716242661 RFvsST 111809 720561207 720449399 no 243.124895476534 TraesCS6B01G345700 chr6B_609372819 chr6B 609372819 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 609372868 609374691 1824 1 0.0548245614035088 RFvsST 111809 720561207 720449399 no 907.233228415016 TraesCS6B01G345800 chr6B_609382770 chr6B 609382770 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 609380436 609382910 2475 2 0.0808080808080808 RFvsST 111809 720561207 720449399 no 164.257099537622 TraesCS6B01G345800 chr6B_609380232 chr6B 609380232 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 609380436 609382910 2475 2 0.0808080808080808 RFvsST 111809 720561207 720449399 no 164.257099537622 TraesCS6B01G346000 chr6B_609854753 chr6B 609854753 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 609854033 609855241 1209 1 0.0827129859387924 RFvsST 111809 720561207 720449399 no 78.0917022507857 TraesCS6B01G346700 chr6B_610813325 chr6B 610813325 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 610808780 610809552 773 2 0.258732212160414 RFvsST 111809 720561207 720449399 no 10.7707457835282 TraesCS6B01G346700 chr6B_610813330 chr6B 610813330 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 610808780 610809552 773 2 0.258732212160414 RFvsST 111809 720561207 720449399 no 10.7707457835282 TraesCS6B01G346800 chr6B_610815227 chr6B 610815227 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 610810192 610816034 5843 1 0.0171144959780934 RFvsST 111809 720561207 720449399 no 43.1352616649935 TraesCS6B01G347600 chr6B_612199641 chr6B 612199641 G G C C 4 missense_variant MODERATE transcript non_Triplet 612197715 612199721 2007 1 0.049825610363727 RFvsST 111809 720561207 720449399 no 161.907495680898 TraesCS6B01G348300 chr6B_613109662 chr6B 613109662 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 613112135 613114612 2478 1 0.0403551251008878 RFvsST 111809 720561207 720449399 no 32.7204352643916 TraesCS6B01G348800 chr6B_613300939 chr6B 613300939 C T C T 3 missense_variant MODERATE transcript unique_Triplet 613298834 613301127 2294 1 0.04359197907585 RFvsST 111809 720561207 720449399 no 108.172218186375 TraesCS6B01G355500 chr6B_623729450 chr6B 623729450 A A T T 4 missense_variant MODERATE transcript unique_Triplet 623725153 623730109 4957 1 0.0201734920314707 RFvsST 111809 720561207 720449399 no 201.827700551002 TraesCS6B01G356300 chr6B_624786689 chr6B 624786689 G G T T 4 synonymous_variant LOW transcript unique_Triplet 624785949 624787061 1113 2 0.179694519317161 RFvsST 111809 720561207 720449399 no 79.3293567544155 TraesCS6B01G356300 chr6B_624787190 chr6B 624787190 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 624785949 624787061 1113 2 0.179694519317161 RFvsST 111809 720561207 720449399 no 79.3293567544155 TraesCS6B01G356400 chr6B_624795986 chr6B 624795986 C C T T 4 synonymous_variant LOW transcript unique_Triplet 624795777 624801680 5904 1 0.0169376693766938 RFvsST 111809 720561207 720449399 no 276.951875184864 TraesCS6B01G360000 chr6B_631966228 chr6B 631966228 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 631951099 631967302 16204 1 0.00617131572451247 RFvsST 111809 720561207 720449399 no 324.835580369723 TraesCS6B01G364000 chr6B_635175381 chr6B 635175381 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 635168431 635172663 4233 1 0.023623907394283 RFvsST 111809 720561207 720449399 no 108.74440199376 TraesCS6B01G367000 chr6B_640973852 chr6B 640973852 C C T T 4 missense_variant MODERATE transcript non_Triplet 640960523 640977347 16825 1 0.00594353640416048 RFvsST 111809 720561207 720449399 no 21.9930974787556 TraesCS6B01G367200 chr6B_641284866 chr6B 641284866 C C A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641288209 chr6B 641288209 G G A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641288104 chr6B 641288104 C C G G 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641286292 chr6B 641286292 C C T T 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641286788 chr6B 641286788 T T A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641280522 chr6B 641280522 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641285882 chr6B 641285882 C C T T 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641286086 chr6B 641286086 T T C C 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641285610 chr6B 641285610 A A G G 4 missense_variant MODERATE transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641285843 chr6B 641285843 G G T T 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641284139 chr6B 641284139 C C T T 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641283258 chr6B 641283258 T T C C 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641286088 chr6B 641286088 T T C C 4 missense_variant MODERATE transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641283234 chr6B 641283234 G G A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641280549 chr6B 641280549 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641291932 chr6B 641291932 G G A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641285654 chr6B 641285654 A A T T 4 missense_variant MODERATE transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641280731 chr6B 641280731 G G C C 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641284848 chr6B 641284848 G G A A 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641283265 chr6B 641283265 A A G G 4 missense_variant MODERATE transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641285622 chr6B 641285622 G G A A 4 missense_variant MODERATE transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641280818 chr6B 641280818 G G C C 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367200 chr6B_641290016 chr6B 641290016 C C T T 4 synonymous_variant LOW transcript unique_Triplet 641280583 641292025 11443 23 0.200996242244167 RFvsST 111809 720561207 720449399 no 164.501631814394 TraesCS6B01G367300 chr6B_641292057 chr6B 641292057 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 641295955 641299409 3455 1 0.0289435600578871 RFvsST 111809 720561207 720449399 no 7.52805856855598 TraesCS6B01G367600 chr6B_641396338 chr6B 641396338 T T C C 4 missense_variant MODERATE transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367600 chr6B_641397228 chr6B 641397228 T T C C 4 missense_variant MODERATE transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367600 chr6B_641395928 chr6B 641395928 A A G G 4 missense_variant MODERATE transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367600 chr6B_641396331 chr6B 641396331 G G A A 4 synonymous_variant LOW transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367600 chr6B_641398478 chr6B 641398478 A A G G 4 missense_variant MODERATE transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367600 chr6B_641396996 chr6B 641396996 A A G G 4 missense_variant MODERATE transcript unique_Triplet 641394814 641398948 4135 6 0.145102781136638 RFvsST 111809 720561207 720449399 no 317.254967258255 TraesCS6B01G367800 chr6B_641412876 chr6B 641412876 A A G G 4 synonymous_variant LOW transcript unique_Triplet 641409252 641412893 3642 1 0.0274574409665019 RFvsST 111809 720561207 720449399 no 923.005679137459 TraesCS6B01G370300 chr6B_643899126 chr6B 643899126 G C G C 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643898752 chr6B 643898752 C G C G 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897402 chr6B 643897402 C A C A 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643898768 chr6B 643898768 A G A G 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643898266 chr6B 643898266 G C G C 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643896914 chr6B 643896914 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897384 chr6B 643897384 T C T C 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643899226 chr6B 643899226 G A G A 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897789 chr6B 643897789 G C G C 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643898494 chr6B 643898494 A C A C 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897682 chr6B 643897682 A G A G 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643898143 chr6B 643898143 C G C G 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897683 chr6B 643897683 C G C G 3 missense_variant MODERATE transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370300 chr6B_643897603 chr6B 643897603 T G T G 3 synonymous_variant LOW transcript non_Triplet 643896917 643899259 2343 14 0.597524541186513 RFvsST 111809 720561207 720449399 no 413.804158833084 TraesCS6B01G370900 chr6B_644477878 chr6B 644477878 C C T T 4 missense_variant MODERATE transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644478405 chr6B 644478405 C C T T 4 synonymous_variant LOW transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644478191 chr6B 644478191 T T C C 4 synonymous_variant LOW transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644478287 chr6B 644478287 G G A A 4 synonymous_variant LOW transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644474732 chr6B 644474732 G G C C 4 synonymous_variant LOW transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644476255 chr6B 644476255 C C A A 4 synonymous_variant LOW transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G370900 chr6B_644477815 chr6B 644477815 C C G G 4 missense_variant MODERATE transcript unique_Triplet 644473713 644478669 4957 7 0.141214444220295 RFvsST 111809 720561207 720449399 no 263.440797766362 TraesCS6B01G371000 chr6B_644479460 chr6B 644479460 G G C C 4 missense_variant MODERATE transcript unique_Triplet 644479012 644484114 5103 1 0.0195963158926122 RFvsST 111809 720561207 720449399 no 23.5846597751492 TraesCS6B01G373800 chr6B_646707402 chr6B 646707402 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 646707090 646710547 3458 1 0.0289184499710815 RFvsST 111809 720561207 720449399 no 262.103182673798 TraesCS6B01G374700 chr6B_648086137 chr6B 648086137 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 648085773 648092481 6709 3 0.0447160530630496 RFvsST 111809 720561207 720449399 no 78.1164585139413 TraesCS6B01G374700 chr6B_648092499 chr6B 648092499 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 648085773 648092481 6709 3 0.0447160530630496 RFvsST 111809 720561207 720449399 no 78.1164585139413 TraesCS6B01G374700 chr6B_648092132 chr6B 648092132 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 648085773 648092481 6709 3 0.0447160530630496 RFvsST 111809 720561207 720449399 no 78.1164585139413 TraesCS6B01G375400 chr6B_649834433 chr6B 649834433 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 649831224 649834547 3324 3 0.0902527075812274 RFvsST 111809 720561207 720449399 no 146.685280098643 TraesCS6B01G375400 chr6B_649831817 chr6B 649831817 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 649831224 649834547 3324 3 0.0902527075812274 RFvsST 111809 720561207 720449399 no 146.685280098643 TraesCS6B01G375400 chr6B_649834221 chr6B 649834221 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 649831224 649834547 3324 3 0.0902527075812274 RFvsST 111809 720561207 720449399 no 146.685280098643 TraesCS6B01G376200 chr6B_651009776 chr6B 651009776 G A G A 3 missense_variant MODERATE transcript unique_Triplet 651002707 651011190 8484 3 0.0353606789250354 RFvsST 111809 720561207 720449399 no 98.0430183334632 TraesCS6B01G376200 chr6B_651007806 chr6B 651007806 C T C T 3 synonymous_variant LOW transcript unique_Triplet 651002707 651011190 8484 3 0.0353606789250354 RFvsST 111809 720561207 720449399 no 98.0430183334632 TraesCS6B01G376200 chr6B_651008784 chr6B 651008784 C A C A 3 synonymous_variant LOW transcript unique_Triplet 651002707 651011190 8484 3 0.0353606789250354 RFvsST 111809 720561207 720449399 no 98.0430183334632 TraesCS6B01G376400 chr6B_651411359 chr6B 651411359 G A G A 3 synonymous_variant LOW transcript non_Triplet 651407344 651415041 7698 4 0.0519615484541439 RFvsST 111809 720561207 720449399 no 343.285295575687 TraesCS6B01G376400 chr6B_651410566 chr6B 651410566 C T C T 3 missense_variant MODERATE transcript non_Triplet 651407344 651415041 7698 4 0.0519615484541439 RFvsST 111809 720561207 720449399 no 343.285295575687 TraesCS6B01G376400 chr6B_651414889 chr6B 651414889 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 651407344 651415041 7698 4 0.0519615484541439 RFvsST 111809 720561207 720449399 no 343.285295575687 TraesCS6B01G376400 chr6B_651410576 chr6B 651410576 T C T C 3 synonymous_variant LOW transcript non_Triplet 651407344 651415041 7698 4 0.0519615484541439 RFvsST 111809 720561207 720449399 no 343.285295575687 TraesCS6B01G376800 chr6B_651987669 chr6B 651987669 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 651987354 651987891 538 2 0.371747211895911 RFvsST 111809 720561207 720449399 no 21.9970744222966 TraesCS6B01G376800 chr6B_651987309 chr6B 651987309 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 651987354 651987891 538 2 0.371747211895911 RFvsST 111809 720561207 720449399 no 21.9970744222966 TraesCS6B01G377200 chr6B_652330454 chr6B 652330454 C C G G 4 missense_variant MODERATE transcript unique_Triplet 652322473 652331473 9001 2 0.0222197533607377 RFvsST 111809 720561207 720449399 no 65.4706919523749 TraesCS6B01G377200 chr6B_652322373 chr6B 652322373 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 652322473 652331473 9001 2 0.0222197533607377 RFvsST 111809 720561207 720449399 no 65.4706919523749 TraesCS6B01G377500 chr6B_652639910 chr6B 652639910 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 652640303 652645640 5338 3 0.0562008242787561 RFvsST 111809 720561207 720449399 no 1380.58554662485 TraesCS6B01G377500 chr6B_652646441 chr6B 652646441 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 652640303 652645640 5338 3 0.0562008242787561 RFvsST 111809 720561207 720449399 no 1380.58554662485 TraesCS6B01G377500 chr6B_652639812 chr6B 652639812 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 652640303 652645640 5338 3 0.0562008242787561 RFvsST 111809 720561207 720449399 no 1380.58554662485 TraesCS6B01G378200 chr6B_653105854 chr6B 653105854 A G A G 3 synonymous_variant LOW transcript unique_Triplet 653100553 653106997 6445 2 0.0310318076027929 RFvsST 111809 720561207 720449399 no 143.442198879667 TraesCS6B01G378200 chr6B_653105752 chr6B 653105752 C T C T 3 synonymous_variant LOW transcript unique_Triplet 653100553 653106997 6445 2 0.0310318076027929 RFvsST 111809 720561207 720449399 no 143.442198879667 TraesCS6B01G381700 chr6B_656512912 chr6B 656512912 G G A A 4 synonymous_variant LOW transcript unique_Triplet 656512504 656515057 2554 1 0.0391542678151919 RFvsST 111809 720561207 720449399 no 102.937133659347 TraesCS6B01G382800 chr6B_657946526 chr6B 657946526 G G A A 4 synonymous_variant LOW transcript unique_Triplet 657944047 657946540 2494 1 0.0400962309542903 RFvsST 111809 720561207 720449399 no 118.223700283155 TraesCS6B01G384700 chr6B_659616078 chr6B 659616078 C C T T 4 synonymous_variant LOW transcript non_Triplet 659612424 659616852 4429 5 0.112892300745089 RFvsST 111809 720561207 720449399 no 97.5866842649286 TraesCS6B01G384700 chr6B_659612821 chr6B 659612821 T A T A 3 missense_variant MODERATE transcript non_Triplet 659612424 659616852 4429 5 0.112892300745089 RFvsST 111809 720561207 720449399 no 97.5866842649286 TraesCS6B01G384700 chr6B_659615862 chr6B 659615862 G T G T 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 659612424 659616852 4429 5 0.112892300745089 RFvsST 111809 720561207 720449399 no 97.5866842649286 TraesCS6B01G384700 chr6B_659616120 chr6B 659616120 T C T C 3 synonymous_variant LOW transcript non_Triplet 659612424 659616852 4429 5 0.112892300745089 RFvsST 111809 720561207 720449399 no 97.5866842649286 TraesCS6B01G384700 chr6B_659612795 chr6B 659612795 G G A A 4 missense_variant MODERATE transcript non_Triplet 659612424 659616852 4429 5 0.112892300745089 RFvsST 111809 720561207 720449399 no 97.5866842649286 TraesCS6B01G384900 chr6B_659649049 chr6B 659649049 C C A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 659639832 659649160 9329 1 0.010719262514739 RFvsST 111809 720561207 720449399 no 40.93332383839 TraesCS6B01G385200 chr6B_660219693 chr6B 660219693 T T C C 4 missense_variant MODERATE transcript unique_Triplet 660218201 660221085 2885 4 0.138648180242634 RFvsST 111809 720561207 720449399 no 228.933651539156 TraesCS6B01G385200 chr6B_660220921 chr6B 660220921 C A C A 3 missense_variant MODERATE transcript unique_Triplet 660218201 660221085 2885 4 0.138648180242634 RFvsST 111809 720561207 720449399 no 228.933651539156 TraesCS6B01G385200 chr6B_660220929 chr6B 660220929 G A G A 3 synonymous_variant LOW transcript unique_Triplet 660218201 660221085 2885 4 0.138648180242634 RFvsST 111809 720561207 720449399 no 228.933651539156 TraesCS6B01G385200 chr6B_660219191 chr6B 660219191 A A G G 4 synonymous_variant LOW transcript unique_Triplet 660218201 660221085 2885 4 0.138648180242634 RFvsST 111809 720561207 720449399 no 228.933651539156 TraesCS6B01G385900 chr6B_660563506 chr6B 660563506 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G385900 chr6B_660563371 chr6B 660563371 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G385900 chr6B_660562948 chr6B 660562948 G C G C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G385900 chr6B_660563070 chr6B 660563070 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G385900 chr6B_660564629 chr6B 660564629 A A C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G385900 chr6B_660563583 chr6B 660563583 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 660563071 660564387 1317 6 0.455580865603645 RFvsST 111809 720561207 720449399 no 239.276545873986 TraesCS6B01G386100 chr6B_660677083 chr6B 660677083 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 660664103 660676246 12144 1 0.00823451910408432 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G386200 chr6B_660677413 chr6B 660677413 A T A T 3 synonymous_variant LOW transcript unique_Triplet 660677145 660680203 3059 2 0.06538084341288 RFvsST 111809 720561207 720449399 no 16.1694269477013 TraesCS6B01G386200 chr6B_660677618 chr6B 660677618 G A G A 3 missense_variant MODERATE transcript unique_Triplet 660677145 660680203 3059 2 0.06538084341288 RFvsST 111809 720561207 720449399 no 16.1694269477013 TraesCS6B01G386400 chr6B_661339112 chr6B 661339112 G C G C 3 synonymous_variant LOW transcript unique_Triplet 661338251 661340087 1837 4 0.217746325530757 RFvsST 111809 720561207 720449399 no 708.960605480354 TraesCS6B01G386400 chr6B_661339939 chr6B 661339939 C C T T 4 missense_variant MODERATE transcript unique_Triplet 661338251 661340087 1837 4 0.217746325530757 RFvsST 111809 720561207 720449399 no 708.960605480354 TraesCS6B01G386400 chr6B_661338529 chr6B 661338529 T T C C 4 synonymous_variant LOW transcript unique_Triplet 661338251 661340087 1837 4 0.217746325530757 RFvsST 111809 720561207 720449399 no 708.960605480354 TraesCS6B01G386400 chr6B_661339487 chr6B 661339487 G G T T 4 missense_variant MODERATE transcript unique_Triplet 661338251 661340087 1837 4 0.217746325530757 RFvsST 111809 720561207 720449399 no 708.960605480354 TraesCS6B01G386500 chr6B_661341568 chr6B 661341568 G A G A 3 missense_variant MODERATE transcript unique_Triplet 661340400 661343630 3231 1 0.0309501702259362 RFvsST 111809 720561207 720449399 no 120.557394140468 TraesCS6B01G386600 chr6B_661466281 chr6B 661466281 C C T T 4 synonymous_variant LOW transcript unique_Triplet 661463787 661467379 3593 2 0.055663790704147 RFvsST 111809 720561207 720449399 no 52.0303892448529 TraesCS6B01G386600 chr6B_661464030 chr6B 661464030 G A G A 3 synonymous_variant LOW transcript unique_Triplet 661463787 661467379 3593 2 0.055663790704147 RFvsST 111809 720561207 720449399 no 52.0303892448529 TraesCS6B01G386700 chr6B_661520462 chr6B 661520462 A C A C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 661520375 661522192 1818 4 0.22002200220022 RFvsST 111809 720561207 720449399 no 383.72794837928 TraesCS6B01G386700 chr6B_661522144 chr6B 661522144 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 661520375 661522192 1818 4 0.22002200220022 RFvsST 111809 720561207 720449399 no 383.72794837928 TraesCS6B01G386700 chr6B_661522142 chr6B 661522142 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 661520375 661522192 1818 4 0.22002200220022 RFvsST 111809 720561207 720449399 no 383.72794837928 TraesCS6B01G386700 chr6B_661520422 chr6B 661520422 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 661520375 661522192 1818 4 0.22002200220022 RFvsST 111809 720561207 720449399 no 383.72794837928 TraesCS6B01G387000 chr6B_661854269 chr6B 661854269 A A G G 4 missense_variant MODERATE transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661855545 chr6B 661855545 C C T T 4 missense_variant MODERATE transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661855774 chr6B 661855774 G G A A 4 synonymous_variant LOW transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661852336 chr6B 661852336 G G A A 4 synonymous_variant LOW transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661856957 chr6B 661856957 T T C C 4 synonymous_variant LOW transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661855756 chr6B 661855756 C C T T 4 synonymous_variant LOW transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661853853 chr6B 661853853 G G A A 4 missense_variant MODERATE transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387000 chr6B_661854053 chr6B 661854053 G G A A 4 synonymous_variant LOW transcript unique_Triplet 661851365 661859387 8023 8 0.0997133241929453 RFvsST 111809 720561207 720449399 no 28.7608010687621 TraesCS6B01G387300 chr6B_662091156 chr6B 662091156 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 662090908 662107315 16408 1 0.0060945880058508 RFvsST 111809 720561207 720449399 no 87.4082867897286 TraesCS6B01G387400 chr6B_662266653 chr6B 662266653 C T C T 3 synonymous_variant LOW transcript unique_Triplet 662257426 662268180 10755 2 0.0185960018596002 RFvsST 111809 720561207 720449399 no 2971.29294684465 TraesCS6B01G387400 chr6B_662257241 chr6B 662257241 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 662257426 662268180 10755 2 0.0185960018596002 RFvsST 111809 720561207 720449399 no 2971.29294684465 TraesCS6B01G387700 chr6B_662513880 chr6B 662513880 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 662510678 662513431 2754 2 0.0726216412490922 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G387700 chr6B_662513866 chr6B 662513866 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 662510678 662513431 2754 2 0.0726216412490922 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G389300 chr6B_664232162 chr6B 664232162 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664229174 chr6B 664229174 T T A A 4 synonymous_variant LOW transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664229099 chr6B 664229099 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664233239 chr6B 664233239 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664228385 chr6B 664228385 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664232838 chr6B 664232838 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664225348 chr6B 664225348 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664228894 chr6B 664228894 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389300 chr6B_664229007 chr6B 664229007 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 664222179 664232873 10695 9 0.0841514726507714 RFvsST 111809 720561207 720449399 no 376.274989453423 TraesCS6B01G389500 chr6B_664295511 chr6B 664295511 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 664290033 664295832 5800 2 0.0344827586206897 RFvsST 111809 720561207 720449399 no 119.290280935519 TraesCS6B01G389500 chr6B_664295178 chr6B 664295178 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 664290033 664295832 5800 2 0.0344827586206897 RFvsST 111809 720561207 720449399 no 119.290280935519 TraesCS6B01G389800 chr6B_664398907 chr6B 664398907 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 664392840 664394216 1377 1 0.0726216412490922 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G396700 chr6B_672506850 chr6B 672506850 C C T T 4 synonymous_variant LOW transcript non_Triplet 672505377 672508284 2908 1 0.0343878954607978 RFvsST 111809 720561207 720449399 no 508.637287697267 TraesCS6B01G414000 chr6B_687178931 chr6B 687178931 G G A A 4 synonymous_variant LOW transcript non_Triplet 687177971 687180657 2687 5 0.186081131373279 RFvsST 111809 720561207 720449399 no 407.15377290678 TraesCS6B01G414000 chr6B_687178344 chr6B 687178344 C C T T 4 missense_variant MODERATE transcript non_Triplet 687177971 687180657 2687 5 0.186081131373279 RFvsST 111809 720561207 720449399 no 407.15377290678 TraesCS6B01G414000 chr6B_687178115 chr6B 687178115 A A G G 4 synonymous_variant LOW transcript non_Triplet 687177971 687180657 2687 5 0.186081131373279 RFvsST 111809 720561207 720449399 no 407.15377290678 TraesCS6B01G414000 chr6B_687180388 chr6B 687180388 T T C C 4 synonymous_variant LOW transcript non_Triplet 687177971 687180657 2687 5 0.186081131373279 RFvsST 111809 720561207 720449399 no 407.15377290678 TraesCS6B01G414000 chr6B_687180076 chr6B 687180076 G G A A 4 synonymous_variant LOW transcript non_Triplet 687177971 687180657 2687 5 0.186081131373279 RFvsST 111809 720561207 720449399 no 407.15377290678 TraesCS6B01G414800 chr6B_687554758 chr6B 687554758 T T C C 4 missense_variant MODERATE transcript unique_Triplet 687554181 687557471 3291 5 0.151929504709815 RFvsST 111809 720561207 720449399 no 138.382625264972 TraesCS6B01G414800 chr6B_687555540 chr6B 687555540 T T C C 4 synonymous_variant LOW transcript unique_Triplet 687554181 687557471 3291 5 0.151929504709815 RFvsST 111809 720561207 720449399 no 138.382625264972 TraesCS6B01G414800 chr6B_687554817 chr6B 687554817 G G A A 4 synonymous_variant LOW transcript unique_Triplet 687554181 687557471 3291 5 0.151929504709815 RFvsST 111809 720561207 720449399 no 138.382625264972 TraesCS6B01G414800 chr6B_687554430 chr6B 687554430 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 687554181 687557471 3291 5 0.151929504709815 RFvsST 111809 720561207 720449399 no 138.382625264972 TraesCS6B01G414800 chr6B_687554800 chr6B 687554800 A A G G 4 missense_variant MODERATE transcript unique_Triplet 687554181 687557471 3291 5 0.151929504709815 RFvsST 111809 720561207 720449399 no 138.382625264972 TraesCS6B01G415700 chr6B_688295953 chr6B 688295953 T T C C 4 synonymous_variant LOW transcript unique_Triplet 688294073 688297328 3256 5 0.153562653562654 RFvsST 111809 720561207 720449399 no 87.8683302824709 TraesCS6B01G415700 chr6B_688297017 chr6B 688297017 A G A G 3 missense_variant MODERATE transcript unique_Triplet 688294073 688297328 3256 5 0.153562653562654 RFvsST 111809 720561207 720449399 no 87.8683302824709 TraesCS6B01G415700 chr6B_688297232 chr6B 688297232 G A G A 3 synonymous_variant LOW transcript unique_Triplet 688294073 688297328 3256 5 0.153562653562654 RFvsST 111809 720561207 720449399 no 87.8683302824709 TraesCS6B01G415700 chr6B_688297268 chr6B 688297268 T C T C 3 synonymous_variant LOW transcript unique_Triplet 688294073 688297328 3256 5 0.153562653562654 RFvsST 111809 720561207 720449399 no 87.8683302824709 TraesCS6B01G415700 chr6B_688296357 chr6B 688296357 C T C T 3 synonymous_variant LOW transcript unique_Triplet 688294073 688297328 3256 5 0.153562653562654 RFvsST 111809 720561207 720449399 no 87.8683302824709 TraesCS6B01G415800 chr6B_688300737 chr6B 688300737 T T C C 4 missense_variant MODERATE transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688300975 chr6B 688300975 G A G A 3 missense_variant MODERATE transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688297570 chr6B 688297570 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688298967 chr6B 688298967 C T C T 3 synonymous_variant LOW transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688301701 chr6B 688301701 T C T C 3 synonymous_variant LOW transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688298955 chr6B 688298955 C T C T 3 synonymous_variant LOW transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688300703 chr6B 688300703 A G A G 3 synonymous_variant LOW transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415800 chr6B_688302147 chr6B 688302147 C T C T 3 missense_variant MODERATE transcript unique_Triplet 688298315 688302495 4181 8 0.191341784262138 RFvsST 111809 720561207 720449399 no 281.89365610229 TraesCS6B01G415900 chr6B_688302606 chr6B 688302606 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 688303776 688307492 3717 1 0.0269034167339252 RFvsST 111809 720561207 720449399 no 3.60209184076512 TraesCS6B01G418400 chr6B_690559029 chr6B 690559029 G G A A 4 synonymous_variant LOW transcript unique_Triplet 690558885 690561813 2929 1 0.0341413451689997 RFvsST 111809 720561207 720449399 no 335.215799239845 TraesCS6B01G426300 chr6B_694674229 chr6B 694674229 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 694674413 694679315 4903 2 0.0407913522333265 RFvsST 111809 720561207 720449399 no 1040.16470248015 TraesCS6B01G426300 chr6B_694674463 chr6B 694674463 C T C T 3 synonymous_variant LOW transcript non_Triplet 694674413 694679315 4903 2 0.0407913522333265 RFvsST 111809 720561207 720449399 no 1040.16470248015 TraesCS6B01G426500 chr6B_694679336 chr6B 694679336 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 694681464 694682327 864 2 0.231481481481481 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G426500 chr6B_694679413 chr6B 694679413 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 694681464 694682327 864 2 0.231481481481481 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G431000 chr6B_699007278 chr6B 699007278 C A C A 3 missense_variant MODERATE transcript unique_Triplet 699003828 699009190 5363 1 0.0186462800671266 RFvsST 111809 720561207 720449399 no 62.9299115272098 TraesCS6B01G432900 chr6B_701978143 chr6B 701978143 G G A A 4 missense_variant MODERATE transcript unique_Triplet 701977549 701982043 4495 1 0.0222469410456062 RFvsST 111809 720561207 720449399 no 237.631362159532 TraesCS6B01G434300 chr6B_702829774 chr6B 702829774 G G A A 4 missense_variant MODERATE transcript unique_Triplet 702825161 702830033 4873 1 0.0205212394828648 RFvsST 111809 720561207 720449399 no 412.294736917794 TraesCS6B01G435000 chr6B_703289574 chr6B 703289574 T C T C 3 missense_variant MODERATE transcript non_Triplet 703288941 703290748 1808 1 0.0553097345132743 RFvsST 111809 720561207 720449399 no 137.10227987329 TraesCS6B01G435100 chr6B_703299846 chr6B 703299846 T C T C 3 synonymous_variant LOW transcript non_Triplet 703298275 703299944 1670 5 0.29940119760479 RFvsST 111809 720561207 720449399 no 81.6143738606525 TraesCS6B01G435100 chr6B_703298644 chr6B 703298644 G A G A 3 synonymous_variant LOW transcript non_Triplet 703298275 703299944 1670 5 0.29940119760479 RFvsST 111809 720561207 720449399 no 81.6143738606525 TraesCS6B01G435100 chr6B_703298706 chr6B 703298706 A G A G 3 synonymous_variant LOW transcript non_Triplet 703298275 703299944 1670 5 0.29940119760479 RFvsST 111809 720561207 720449399 no 81.6143738606525 TraesCS6B01G435100 chr6B_703298509 chr6B 703298509 G T G T 3 missense_variant MODERATE transcript non_Triplet 703298275 703299944 1670 5 0.29940119760479 RFvsST 111809 720561207 720449399 no 81.6143738606525 TraesCS6B01G435100 chr6B_703298350 chr6B 703298350 G T G T 3 synonymous_variant LOW transcript non_Triplet 703298275 703299944 1670 5 0.29940119760479 RFvsST 111809 720561207 720449399 no 81.6143738606525 TraesCS6B01G436400 chr6B_704038645 chr6B 704038645 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G436400 chr6B_704040851 chr6B 704040851 A G A G 3 synonymous_variant LOW transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G436400 chr6B_704040818 chr6B 704040818 C T C T 3 synonymous_variant LOW transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G436400 chr6B_704038656 chr6B 704038656 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G436400 chr6B_704038676 chr6B 704038676 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G436400 chr6B_704040791 chr6B 704040791 T C T C 3 synonymous_variant LOW transcript unique_Triplet 704038894 704042474 3581 6 0.16755096341804 RFvsST 111809 720561207 720449399 no 435.71391881944 TraesCS6B01G438500 chr6B_704740914 chr6B 704740914 A T A T 3 missense_variant MODERATE transcript non_Triplet 704738737 704742209 3473 1 0.0287935502447452 RFvsST 111809 720561207 720449399 no 100.270740384693 TraesCS6B01G438600 chr6B_704742265 chr6B 704742265 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 704743659 704745056 1398 1 0.0715307582260372 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G438800 chr6B_704793714 chr6B 704793714 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704788471 704796246 7776 1 0.0128600823045267 RFvsST 111809 720561207 720449399 no 19.7899843969022 TraesCS6B01G439300 chr6B_704882247 chr6B 704882247 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 704879300 704881854 2555 2 0.0782778864970646 RFvsST 111809 720561207 720449399 no 52.9272965694048 TraesCS6B01G439300 chr6B_704882398 chr6B 704882398 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 704879300 704881854 2555 2 0.0782778864970646 RFvsST 111809 720561207 720449399 no 52.9272965694048 TraesCS6B01G439400 chr6B_704884627 chr6B 704884627 G A G A 3 missense_variant MODERATE transcript unique_Triplet 704882414 704885861 3448 1 0.0290023201856148 RFvsST 111809 720561207 720449399 no 7.6568311524449 TraesCS6B01G439600 chr6B_704972391 chr6B 704972391 G C G C 3 synonymous_variant LOW transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704974316 chr6B 704974316 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704974517 chr6B 704974517 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704973350 chr6B 704973350 C T C T 3 missense_variant MODERATE transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704972802 chr6B 704972802 A G A G 3 synonymous_variant LOW transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704973972 chr6B 704973972 G A G A 3 missense_variant MODERATE transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704974553 chr6B 704974553 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704973243 chr6B 704973243 T G T G 3 synonymous_variant LOW transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439600 chr6B_704973932 chr6B 704973932 A G A G 3 synonymous_variant LOW transcript unique_Triplet 704971654 704974202 2549 9 0.353079639074147 RFvsST 111809 720561207 720449399 no 197.882690463225 TraesCS6B01G439700 chr6B_705156418 chr6B 705156418 C G C G 3 missense_variant MODERATE transcript unique_Triplet 705155271 705156899 1629 2 0.122774708410068 RFvsST 111809 720561207 720449399 no 148.785748333017 TraesCS6B01G439700 chr6B_705156335 chr6B 705156335 G A G A 3 synonymous_variant LOW transcript unique_Triplet 705155271 705156899 1629 2 0.122774708410068 RFvsST 111809 720561207 720449399 no 148.785748333017 TraesCS6B01G439800 chr6B_705159008 chr6B 705159008 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 705158924 705162882 3959 1 0.0252589037635767 RFvsST 111809 720561207 720449399 no 647.594568964968 TraesCS6B01G440000 chr6B_705282518 chr6B 705282518 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 705282693 705285851 3159 5 0.158277936055714 RFvsST 111809 720561207 720449399 no 222.305330366073 TraesCS6B01G440000 chr6B_705285737 chr6B 705285737 C T C T 3 synonymous_variant LOW transcript unique_Triplet 705282693 705285851 3159 5 0.158277936055714 RFvsST 111809 720561207 720449399 no 222.305330366073 TraesCS6B01G440000 chr6B_705285734 chr6B 705285734 A G A G 3 synonymous_variant LOW transcript unique_Triplet 705282693 705285851 3159 5 0.158277936055714 RFvsST 111809 720561207 720449399 no 222.305330366073 TraesCS6B01G440000 chr6B_705282524 chr6B 705282524 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 705282693 705285851 3159 5 0.158277936055714 RFvsST 111809 720561207 720449399 no 222.305330366073 TraesCS6B01G440000 chr6B_705285280 chr6B 705285280 G C G C 3 missense_variant MODERATE transcript unique_Triplet 705282693 705285851 3159 5 0.158277936055714 RFvsST 111809 720561207 720449399 no 222.305330366073 TraesCS6B01G440600 chr6B_705503278 chr6B 705503278 A G A G 3 missense_variant MODERATE transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G440600 chr6B_705503290 chr6B 705503290 C T C T 3 missense_variant MODERATE transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G440600 chr6B_705503320 chr6B 705503320 C G C G 3 missense_variant MODERATE transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G440600 chr6B_705503161 chr6B 705503161 C T C T 3 synonymous_variant LOW transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G440600 chr6B_705503338 chr6B 705503338 T G T G 3 missense_variant MODERATE transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G440600 chr6B_705503157 chr6B 705503157 T G T G 3 synonymous_variant LOW transcript non_Triplet 705502771 705506268 3498 6 0.171526586620926 RFvsST 111809 720561207 720449399 no 882.596235275252 TraesCS6B01G443700 chr6B_706625843 chr6B 706625843 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706625802 chr6B 706625802 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706627072 chr6B 706627072 A G A G 3 synonymous_variant LOW transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706626937 chr6B 706626937 G C G C 3 synonymous_variant LOW transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706626059 chr6B 706626059 G T G T 3 missense_variant MODERATE transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706626922 chr6B 706626922 T C T C 3 synonymous_variant LOW transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706625968 chr6B 706625968 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706627453 chr6B 706627453 T C T C 3 synonymous_variant LOW transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706627510 chr6B 706627510 G A G A 3 synonymous_variant LOW transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706627355 chr6B 706627355 A T A T 3 missense_variant MODERATE transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G443700 chr6B_706627127 chr6B 706627127 A C A C 3 missense_variant MODERATE transcript unique_Triplet 706625635 706628736 3102 11 0.354609929078014 RFvsST 111809 720561207 720449399 no 473.78053823751 TraesCS6B01G444100 chr6B_706911695 chr6B 706911695 C C G G 4 synonymous_variant LOW transcript unique_Triplet 706910754 706913206 2453 2 0.0815328169588259 RFvsST 111809 720561207 720449399 no 2743.26992327615 TraesCS6B01G444100 chr6B_706911644 chr6B 706911644 C C G G 4 synonymous_variant LOW transcript unique_Triplet 706910754 706913206 2453 2 0.0815328169588259 RFvsST 111809 720561207 720449399 no 2743.26992327615 TraesCS6B01G447500 chr6B_708023803 chr6B 708023803 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 708019273 708020879 1607 5 0.311138767890479 RFvsST 111809 720561207 720449399 no 19.6988693060039 TraesCS6B01G447500 chr6B_708019344 chr6B 708019344 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 708019273 708020879 1607 5 0.311138767890479 RFvsST 111809 720561207 720449399 no 19.6988693060039 TraesCS6B01G447500 chr6B_708019321 chr6B 708019321 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 708019273 708020879 1607 5 0.311138767890479 RFvsST 111809 720561207 720449399 no 19.6988693060039 TraesCS6B01G447500 chr6B_708023833 chr6B 708023833 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 708019273 708020879 1607 5 0.311138767890479 RFvsST 111809 720561207 720449399 no 19.6988693060039 TraesCS6B01G447500 chr6B_708023776 chr6B 708023776 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 708019273 708020879 1607 5 0.311138767890479 RFvsST 111809 720561207 720449399 no 19.6988693060039 TraesCS6B01G447600 chr6B_708027383 chr6B 708027383 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708026885 chr6B 708026885 C C G G 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708026035 chr6B 708026035 C C T T 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708023488 chr6B 708023488 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708027407 chr6B 708027407 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708027459 chr6B 708027459 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708026629 chr6B 708026629 T T C C 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708024361 chr6B 708024361 A A G G 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708026562 chr6B 708026562 T T C C 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708025275 chr6B 708025275 C C A A 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708024289 chr6B 708024289 T T C C 4 synonymous_variant LOW transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708023574 chr6B 708023574 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708024372 chr6B 708024372 T T C C 4 missense_variant MODERATE transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708026922 chr6B 708026922 A A G G 4 missense_variant MODERATE transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447600 chr6B_708027474 chr6B 708027474 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 708023657 708027314 3658 15 0.410060142154183 RFvsST 111809 720561207 720449399 no 83.747035752974 TraesCS6B01G447700 chr6B_708046926 chr6B 708046926 G G A A 4 missense_variant MODERATE transcript unique_Triplet 708046334 708047551 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 801.295486864586 TraesCS6B01G447700 chr6B_708046697 chr6B 708046697 G G T T 4 missense_variant MODERATE transcript unique_Triplet 708046334 708047551 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 801.295486864586 TraesCS6B01G447700 chr6B_708046358 chr6B 708046358 T T C C 4 missense_variant MODERATE transcript unique_Triplet 708046334 708047551 1218 3 0.246305418719212 RFvsST 111809 720561207 720449399 no 801.295486864586 TraesCS6B01G448900 chr6B_708516474 chr6B 708516474 C T C T 3 synonymous_variant LOW transcript unique_Triplet 708515661 708516758 1098 4 0.364298724954463 RFvsST 111809 720561207 720449399 no 203.116021630486 TraesCS6B01G448900 chr6B_708516084 chr6B 708516084 G T G T 3 synonymous_variant LOW transcript unique_Triplet 708515661 708516758 1098 4 0.364298724954463 RFvsST 111809 720561207 720449399 no 203.116021630486 TraesCS6B01G448900 chr6B_708516480 chr6B 708516480 C C T T 4 synonymous_variant LOW transcript unique_Triplet 708515661 708516758 1098 4 0.364298724954463 RFvsST 111809 720561207 720449399 no 203.116021630486 TraesCS6B01G448900 chr6B_708516697 chr6B 708516697 G A G A 3 missense_variant MODERATE transcript unique_Triplet 708515661 708516758 1098 4 0.364298724954463 RFvsST 111809 720561207 720449399 no 203.116021630486 TraesCS6B01G449000 chr6B_708625644 chr6B 708625644 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 708623172 708625619 2448 2 0.0816993464052288 RFvsST 111809 720561207 720449399 no 301.840536434954 TraesCS6B01G449000 chr6B_708623107 chr6B 708623107 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 708623172 708625619 2448 2 0.0816993464052288 RFvsST 111809 720561207 720449399 no 301.840536434954 TraesCS6B01G449100 chr6B_708658666 chr6B 708658666 A A G G 4 synonymous_variant LOW transcript unique_Triplet 708658018 708663104 5087 2 0.0393159032828779 RFvsST 111809 720561207 720449399 no 135.052035060739 TraesCS6B01G449100 chr6B_708661123 chr6B 708661123 A A G G 4 synonymous_variant LOW transcript unique_Triplet 708658018 708663104 5087 2 0.0393159032828779 RFvsST 111809 720561207 720449399 no 135.052035060739 TraesCS6B01G449300 chr6B_708674474 chr6B 708674474 G C G C 3 missense_variant MODERATE transcript unique_Triplet 708669463 708675021 5559 1 0.0179888469149128 RFvsST 111809 720561207 720449399 no 77.6541382915216 TraesCS6B01G449800 chr6B_708783437 chr6B 708783437 T T C C 4 missense_variant MODERATE transcript unique_Triplet 708781483 708786839 5357 1 0.0186671644577189 RFvsST 111809 720561207 720449399 no 331.076553816501 TraesCS6B01G450700 chr6B_709531281 chr6B 709531281 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 709532241 709536647 4407 1 0.022691173133651 RFvsST 111809 720561207 720449399 no 29.8572501684407 TraesCS6B01G451100 chr6B_710006969 chr6B 710006969 T C T C 3 synonymous_variant LOW transcript non_Triplet 710001699 710006993 5295 1 0.0188857412653447 RFvsST 111809 720561207 720449399 no 29.0824350872792 TraesCS6B01G451200 chr6B_710101117 chr6B 710101117 G C G C 3 synonymous_variant LOW transcript unique_Triplet 710096880 710101198 4319 5 0.115767538782125 RFvsST 111809 720561207 720449399 no 271.854587248579 TraesCS6B01G451200 chr6B_710102014 chr6B 710102014 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 710096880 710101198 4319 5 0.115767538782125 RFvsST 111809 720561207 720449399 no 271.854587248579 TraesCS6B01G451200 chr6B_710100961 chr6B 710100961 C G C G 3 synonymous_variant LOW transcript unique_Triplet 710096880 710101198 4319 5 0.115767538782125 RFvsST 111809 720561207 720449399 no 271.854587248579 TraesCS6B01G451200 chr6B_710101268 chr6B 710101268 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 710096880 710101198 4319 5 0.115767538782125 RFvsST 111809 720561207 720449399 no 271.854587248579 TraesCS6B01G451200 chr6B_710101536 chr6B 710101536 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 710096880 710101198 4319 5 0.115767538782125 RFvsST 111809 720561207 720449399 no 271.854587248579 TraesCS6B01G451300 chr6B_710103661 chr6B 710103661 C T C T 3 missense_variant MODERATE transcript unique_Triplet 710102321 710106188 3868 5 0.129265770423992 RFvsST 111809 720561207 720449399 no 392.889422124345 TraesCS6B01G451300 chr6B_710102554 chr6B 710102554 T C T C 3 missense_variant MODERATE transcript unique_Triplet 710102321 710106188 3868 5 0.129265770423992 RFvsST 111809 720561207 720449399 no 392.889422124345 TraesCS6B01G451300 chr6B_710106212 chr6B 710106212 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 710102321 710106188 3868 5 0.129265770423992 RFvsST 111809 720561207 720449399 no 392.889422124345 TraesCS6B01G451300 chr6B_710102896 chr6B 710102896 G C G C 3 missense_variant MODERATE transcript unique_Triplet 710102321 710106188 3868 5 0.129265770423992 RFvsST 111809 720561207 720449399 no 392.889422124345 TraesCS6B01G451300 chr6B_710102722 chr6B 710102722 C T C T 3 missense_variant MODERATE transcript unique_Triplet 710102321 710106188 3868 5 0.129265770423992 RFvsST 111809 720561207 720449399 no 392.889422124345 TraesCS6B01G451800 chr6B_710322799 chr6B 710322799 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451800 chr6B_710321640 chr6B 710321640 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451800 chr6B_710320205 chr6B 710320205 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451800 chr6B_710320830 chr6B 710320830 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451800 chr6B_710322441 chr6B 710322441 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451800 chr6B_710321114 chr6B 710321114 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 710317072 710319274 2203 6 0.272355878347708 RFvsST 111809 720561207 720449399 no 6.50037898275854 TraesCS6B01G451900 chr6B_710640747 chr6B 710640747 G C G C 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710640766 chr6B 710640766 C T C T 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710643361 chr6B 710643361 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710640534 chr6B 710640534 C T C T 3 synonymous_variant LOW transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710640875 chr6B 710640875 G C G C 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710643362 chr6B 710643362 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710642163 chr6B 710642163 G A G A 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710642053 chr6B 710642053 G T G T 3 synonymous_variant LOW transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710640690 chr6B 710640690 C A C A 3 synonymous_variant LOW transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710641518 chr6B 710641518 C T C T 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710642975 chr6B 710642975 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710643030 chr6B 710643030 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710643171 chr6B 710643171 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710642325 chr6B 710642325 T G T G 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710642089 chr6B 710642089 C T C T 3 synonymous_variant LOW transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710640906 chr6B 710640906 T G T G 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G451900 chr6B_710641350 chr6B 710641350 T A T A 3 missense_variant MODERATE transcript non_Triplet 710640510 710642945 2436 17 0.697865353037767 RFvsST 111809 720561207 720449399 no 148.135947124793 TraesCS6B01G452200 chr6B_711236495 chr6B 711236495 C T C T 3 missense_variant MODERATE transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236045 chr6B 711236045 G A G A 3 missense_variant MODERATE transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236612 chr6B 711236612 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236465 chr6B 711236465 A G A G 3 missense_variant MODERATE transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236634 chr6B 711236634 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711237844 chr6B 711237844 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711237449 chr6B 711237449 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236459 chr6B 711236459 G C G C 3 missense_variant MODERATE transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711237838 chr6B 711237838 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711236709 chr6B 711236709 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G452200 chr6B_711237892 chr6B 711237892 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 711235209 711236556 1348 11 0.816023738872404 RFvsST 111809 720561207 720449399 no 113.706984281701 TraesCS6B01G453800 chr6B_711757310 chr6B 711757310 A A T T 4 missense_variant MODERATE transcript non_Triplet 711755839 711757963 2125 1 0.0470588235294118 RFvsST 111809 720561207 720449399 no 157.545459890853 TraesCS6B01G453900 chr6B_711757966 chr6B 711757966 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 711762814 711764848 2035 1 0.0491400491400491 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G454500 chr6B_712124626 chr6B 712124626 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 712124700 712125293 594 1 0.168350168350168 RFvsST 111809 720561207 720449399 no 446.179284364718 TraesCS6B01G455000 chr6B_712243698 chr6B 712243698 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 712235600 712240076 4477 1 0.0223363859727496 RFvsST 111809 720561207 720449399 no 49.2500522217072 TraesCS6B01G456300 chr6B_712501144 chr6B 712501144 T T A A 4 missense_variant MODERATE transcript unique_Triplet 712497599 712503809 6211 1 0.0161004669135405 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G456500 chr6B_712672807 chr6B 712672807 C C T T 4 missense_variant MODERATE transcript unique_Triplet 712666209 712674151 7943 2 0.025179403248143 RFvsST 111809 720561207 720449399 no 20.3534209057397 TraesCS6B01G456500 chr6B_712672799 chr6B 712672799 C T C T 3 synonymous_variant LOW transcript unique_Triplet 712666209 712674151 7943 2 0.025179403248143 RFvsST 111809 720561207 720449399 no 20.3534209057397 TraesCS6B01G456800 chr6B_712993978 chr6B 712993978 G A G A 3 synonymous_variant LOW transcript unique_Triplet 712993217 712998381 5165 5 0.0968054211035818 RFvsST 111809 720561207 720449399 no 21.8504439735492 TraesCS6B01G456800 chr6B_712998458 chr6B 712998458 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 712993217 712998381 5165 5 0.0968054211035818 RFvsST 111809 720561207 720449399 no 21.8504439735492 TraesCS6B01G456800 chr6B_712994854 chr6B 712994854 G A G A 3 missense_variant MODERATE transcript unique_Triplet 712993217 712998381 5165 5 0.0968054211035818 RFvsST 111809 720561207 720449399 no 21.8504439735492 TraesCS6B01G456800 chr6B_712997034 chr6B 712997034 C G C G 3 synonymous_variant LOW transcript unique_Triplet 712993217 712998381 5165 5 0.0968054211035818 RFvsST 111809 720561207 720449399 no 21.8504439735492 TraesCS6B01G456800 chr6B_712998400 chr6B 712998400 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 712993217 712998381 5165 5 0.0968054211035818 RFvsST 111809 720561207 720449399 no 21.8504439735492 TraesCS6B01G456900 chr6B_713008377 chr6B 713008377 G C G C 3 synonymous_variant LOW transcript unique_Triplet 713007742 713009093 1352 3 0.22189349112426 RFvsST 111809 720561207 720449399 no 7.53440738548276 TraesCS6B01G456900 chr6B_713008606 chr6B 713008606 G C G C 3 missense_variant MODERATE transcript unique_Triplet 713007742 713009093 1352 3 0.22189349112426 RFvsST 111809 720561207 720449399 no 7.53440738548276 TraesCS6B01G456900 chr6B_713008601 chr6B 713008601 A C A C 3 missense_variant MODERATE transcript unique_Triplet 713007742 713009093 1352 3 0.22189349112426 RFvsST 111809 720561207 720449399 no 7.53440738548276 TraesCS6B01G458200 chr6B_713459622 chr6B 713459622 A A T T 4 missense_variant MODERATE transcript non_Triplet 713458676 713462914 4239 2 0.0471809389006841 RFvsST 111809 720561207 720449399 no 200.203221798839 TraesCS6B01G458200 chr6B_713459617 chr6B 713459617 C C T T 4 synonymous_variant LOW transcript non_Triplet 713458676 713462914 4239 2 0.0471809389006841 RFvsST 111809 720561207 720449399 no 200.203221798839 TraesCS6B01G460100 chr6B_713971967 chr6B 713971967 C G C G 3 missense_variant MODERATE transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713971805 chr6B 713971805 A G A G 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713971804 chr6B 713971804 A T A T 3 missense_variant MODERATE transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713972614 chr6B 713972614 T T A A 4 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713976438 chr6B 713976438 C T C T 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713972572 chr6B 713972572 A A G G 4 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713971779 chr6B 713971779 A A G G 4 missense_variant MODERATE transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713974840 chr6B 713974840 C T C T 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713973875 chr6B 713973875 A G A G 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713973935 chr6B 713973935 A T A T 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713974716 chr6B 713974716 C T C T 3 missense_variant MODERATE transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460100 chr6B_713974717 chr6B 713974717 G T G T 3 synonymous_variant LOW transcript unique_Triplet 713971231 713976734 5504 12 0.218023255813953 RFvsST 111809 720561207 720449399 no 303.266371444772 TraesCS6B01G460300 chr6B_714064053 chr6B 714064053 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 714064260 714065788 1529 3 0.196206671026815 RFvsST 111809 720561207 720449399 no 470.475802988973 TraesCS6B01G460300 chr6B_714064107 chr6B 714064107 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 714064260 714065788 1529 3 0.196206671026815 RFvsST 111809 720561207 720449399 no 470.475802988973 TraesCS6B01G460300 chr6B_714064076 chr6B 714064076 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 714064260 714065788 1529 3 0.196206671026815 RFvsST 111809 720561207 720449399 no 470.475802988973 TraesCS6B01G461200 chr6B_714578879 chr6B 714578879 T T C C 4 missense_variant MODERATE transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714578925 chr6B 714578925 T T C C 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580426 chr6B 714580426 G G C C 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580141 chr6B 714580141 T T G G 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714578781 chr6B 714578781 C C A A 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580330 chr6B 714580330 C C G G 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580450 chr6B 714580450 C C G G 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580150 chr6B 714580150 C C G G 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580447 chr6B 714580447 G G C C 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714580192 chr6B 714580192 G G A A 4 synonymous_variant LOW transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461200 chr6B_714578936 chr6B 714578936 T C T C 3 missense_variant MODERATE transcript non_Triplet 714578685 714580668 1984 11 0.554435483870968 RFvsST 111809 720561207 720449399 no 117.42654588677 TraesCS6B01G461300 chr6B_714627270 chr6B 714627270 G A G A 3 synonymous_variant LOW transcript non_Triplet 714626211 714628788 2578 2 0.0775795190069822 RFvsST 111809 720561207 720449399 no 37.2529841732828 TraesCS6B01G461300 chr6B_714628393 chr6B 714628393 G G A A 4 synonymous_variant LOW transcript non_Triplet 714626211 714628788 2578 2 0.0775795190069822 RFvsST 111809 720561207 720449399 no 37.2529841732828 TraesCS6B01G463000 chr6B_715709265 chr6B 715709265 C C A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715707911 chr6B 715707911 C C T T 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715707944 chr6B 715707944 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705107 chr6B 715705107 A A G G 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715706291 chr6B 715706291 C C T T 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715707935 chr6B 715707935 T T A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715709429 chr6B 715709429 G G T T 4 missense_variant MODERATE transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715706210 chr6B 715706210 A A T T 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715708022 chr6B 715708022 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705047 chr6B 715705047 G G C C 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715704770 chr6B 715704770 T T C C 4 missense_variant MODERATE transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705580 chr6B 715705580 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715706159 chr6B 715706159 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705357 chr6B 715705357 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705402 chr6B 715705402 C C T T 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715704933 chr6B 715704933 A A G G 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715704269 chr6B 715704269 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715709154 chr6B 715709154 A A C C 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715708025 chr6B 715708025 G G A A 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715708784 chr6B 715708784 T T G G 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715706383 chr6B 715706383 G G T T 4 missense_variant MODERATE transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705384 chr6B 715705384 C C T T 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715705032 chr6B 715705032 T T C C 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463000 chr6B_715708767 chr6B 715708767 C C G G 4 synonymous_variant LOW transcript unique_Triplet 715704505 715709513 5009 24 0.47913755240567 RFvsST 111809 720561207 720449399 no 406.648996636092 TraesCS6B01G463600 chr6B_715812861 chr6B 715812861 T T C C 4 missense_variant MODERATE transcript non_Triplet 715811696 715816952 5257 2 0.0380445120791326 RFvsST 111809 720561207 720449399 no 216.267156921424 TraesCS6B01G463600 chr6B_715816755 chr6B 715816755 G G A A 4 synonymous_variant LOW transcript non_Triplet 715811696 715816952 5257 2 0.0380445120791326 RFvsST 111809 720561207 720449399 no 216.267156921424 TraesCS6B01G464000 chr6B_715891855 chr6B 715891855 C C G G 4 intron_variant MODIFIER transcript non_Triplet 715883318 715920562 37245 1 0.00268492415089274 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G464300 chr6B_715975910 chr6B 715975910 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 715965995 715971058 5064 3 0.0592417061611374 RFvsST 111809 720561207 720449399 no 9.09039419965218 TraesCS6B01G464300 chr6B_715975942 chr6B 715975942 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 715965995 715971058 5064 3 0.0592417061611374 RFvsST 111809 720561207 720449399 no 9.09039419965218 TraesCS6B01G464300 chr6B_715976007 chr6B 715976007 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 715965995 715971058 5064 3 0.0592417061611374 RFvsST 111809 720561207 720449399 no 9.09039419965218 TraesCS6B01G464400 chr6B_715977945 chr6B 715977945 C C T T 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976252 chr6B 715976252 C C G G 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977787 chr6B 715977787 T T C C 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979731 chr6B 715979731 T T C C 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976774 chr6B 715976774 C C T T 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977848 chr6B 715977848 T T C C 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979810 chr6B 715979810 G G A A 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978166 chr6B 715978166 C C A A 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977923 chr6B 715977923 G G A A 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715980236 chr6B 715980236 C C G G 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976607 chr6B 715976607 T T C C 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715980188 chr6B 715980188 C C G G 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976981 chr6B 715976981 G G A A 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976230 chr6B 715976230 C C T T 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979805 chr6B 715979805 G G A A 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976800 chr6B 715976800 T T C C 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976809 chr6B 715976809 G G A A 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977679 chr6B 715977679 C C T T 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977565 chr6B 715977565 C C G G 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978432 chr6B 715978432 T T A A 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978062 chr6B 715978062 T T G G 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977099 chr6B 715977099 A A G G 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976938 chr6B 715976938 G G T T 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979876 chr6B 715979876 A A T T 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978397 chr6B 715978397 G G T T 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977745 chr6B 715977745 T T C C 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977611 chr6B 715977611 A A G G 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977127 chr6B 715977127 G G A A 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715980086 chr6B 715980086 T T C C 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977221 chr6B 715977221 A A T T 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978161 chr6B 715978161 C C T T 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979873 chr6B 715979873 C C T T 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977135 chr6B 715977135 C C T T 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977621 chr6B 715977621 G G A A 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715980018 chr6B 715980018 A A G G 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715977296 chr6B 715977296 A A C C 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715976987 chr6B 715976987 T T G G 4 intron_variant MODIFIER transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715979916 chr6B 715979916 T T G G 4 missense_variant MODERATE transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G464400 chr6B_715978277 chr6B 715978277 T T A A 4 synonymous_variant LOW transcript non_Triplet 715976013 715980262 4250 39 0.917647058823529 RFvsST 111809 720561207 720449399 no 887.917893529366 TraesCS6B01G468200 chr6B_717863263 chr6B 717863263 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717861773 chr6B 717861773 T A T A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717867639 chr6B 717867639 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717874858 chr6B 717874858 T C T C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717865413 chr6B 717865413 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717862380 chr6B 717862380 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717874421 chr6B 717874421 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468200 chr6B_717870283 chr6B 717870283 G T G T 3 synonymous_variant LOW transcript nonUnique_Triplet 717861886 717874594 12709 8 0.0629475175072783 RFvsST 111809 720561207 720449399 no 440.590628666339 TraesCS6B01G468300 chr6B_717891958 chr6B 717891958 G C G C 3 missense_variant MODERATE transcript unique_Triplet 717891413 717892781 1369 2 0.14609203798393 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G468300 chr6B_717893365 chr6B 717893365 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 717891413 717892781 1369 2 0.14609203798393 RFvsST 111809 720561207 720449399 no No_match TraesCS6B01G468900 chr6B_717963565 chr6B 717963565 G G C C 4 synonymous_variant LOW transcript unique_Triplet 717961425 717964135 2711 3 0.110660272962007 RFvsST 111809 720561207 720449399 no 16.585196601434 TraesCS6B01G468900 chr6B_717967353 chr6B 717967353 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 717961425 717964135 2711 3 0.110660272962007 RFvsST 111809 720561207 720449399 no 16.585196601434 TraesCS6B01G468900 chr6B_717967326 chr6B 717967326 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 717961425 717964135 2711 3 0.110660272962007 RFvsST 111809 720561207 720449399 no 16.585196601434 TraesCS6B01G469000 chr6B_717968523 chr6B 717968523 T T G G 4 synonymous_variant LOW transcript unique_Triplet 717967518 717969059 1542 5 0.324254215304799 RFvsST 111809 720561207 720449399 no 143.465626861486 TraesCS6B01G469000 chr6B_717967722 chr6B 717967722 C C T T 4 synonymous_variant LOW transcript unique_Triplet 717967518 717969059 1542 5 0.324254215304799 RFvsST 111809 720561207 720449399 no 143.465626861486 TraesCS6B01G469000 chr6B_717967977 chr6B 717967977 A T A T 3 synonymous_variant LOW transcript unique_Triplet 717967518 717969059 1542 5 0.324254215304799 RFvsST 111809 720561207 720449399 no 143.465626861486 TraesCS6B01G469000 chr6B_717968409 chr6B 717968409 G A G A 3 synonymous_variant LOW transcript unique_Triplet 717967518 717969059 1542 5 0.324254215304799 RFvsST 111809 720561207 720449399 no 143.465626861486 TraesCS6B01G469000 chr6B_717968132 chr6B 717968132 G G T T 4 missense_variant MODERATE transcript unique_Triplet 717967518 717969059 1542 5 0.324254215304799 RFvsST 111809 720561207 720449399 no 143.465626861486 TraesCS6B01G471500 chr6B_719509284 chr6B 719509284 T A T A 3 synonymous_variant LOW transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509035 chr6B 719509035 T G T G 3 missense_variant MODERATE transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509591 chr6B 719509591 G C G C 3 missense_variant MODERATE transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509188 chr6B 719509188 C T C T 3 synonymous_variant LOW transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509032 chr6B 719509032 G A G A 3 synonymous_variant LOW transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509532 chr6B 719509532 C T C T 3 missense_variant MODERATE transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509354 chr6B 719509354 C T C T 3 missense_variant MODERATE transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509395 chr6B 719509395 T C T C 3 synonymous_variant LOW transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471500 chr6B_719509590 chr6B 719509590 C C T T 4 synonymous_variant LOW transcript unique_Triplet 719508577 719509767 1191 9 0.755667506297229 RFvsST 111809 720561207 720449399 no 146.610316744468 TraesCS6B01G471600 chr6B_719675666 chr6B 719675666 C T C T 3 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719675810 chr6B 719675810 G T G T 3 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719675229 chr6B 719675229 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719676006 chr6B 719676006 G C G C 3 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719678476 chr6B 719678476 G G T T 4 synonymous_variant LOW transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719676226 chr6B 719676226 C C A A 4 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719677475 chr6B 719677475 T T C C 4 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G471600 chr6B_719676376 chr6B 719676376 C T C T 3 missense_variant MODERATE transcript unique_Triplet 719675370 719678550 3181 8 0.251493241119145 RFvsST 111809 720561207 720449399 no 439.528197207741 TraesCS6B01G472700 chr6B_720418561 chr6B 720418561 T T C C 4 missense_variant MODERATE transcript unique_Triplet 720418530 720423042 4513 1 0.022158209616663 RFvsST 111809 720561207 720449399 no 461.168878861327 TraesCS6B01G472900 chr6B_720497921 chr6B 720497921 G G A A 4 synonymous_variant LOW transcript unique_Triplet 720491275 720502999 11725 1 0.00852878464818763 RFvsST 111809 720561207 720449399 no 139.303883988564 TraesCS6B01G473000 chr6B_720508253 chr6B 720508253 C C T T 4 synonymous_variant LOW transcript unique_Triplet 720505158 720510488 5331 1 0.018758206715438 RFvsST 111809 720561207 720449399 no 647.795113750183 TraesCS6B01G473100 chr6B_720510615 chr6B 720510615 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 720513093 720513824 732 1 0.136612021857924 RFvsST 111809 720561207 720449399 no No_match TraesCS6D01G001600 chr6D_808185 chr6D 808185 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 803603 804859 1257 3 0.238663484486874 RFvsST 397372 295601027 295203656 no 1871.06584950084 TraesCS6D01G001600 chr6D_808227 chr6D 808227 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 803603 804859 1257 3 0.238663484486874 RFvsST 397372 295601027 295203656 no 1871.06584950084 TraesCS6D01G001600 chr6D_807054 chr6D 807054 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 803603 804859 1257 3 0.238663484486874 RFvsST 397372 295601027 295203656 no 1871.06584950084 TraesCS6D01G001700 chr6D_807148 chr6D 807148 A C A C 3 synonymous_variant LOW transcript unique_Triplet 805502 808087 2586 1 0.0386697602474865 RFvsST 397372 295601027 295203656 no 12531.931846796 TraesCS6D01G002200 chr6D_1414289 chr6D 1414289 G A G A 3 synonymous_variant LOW transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1413142 chr6D 1413142 G T G T 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1413503 chr6D 1413503 A G A G 3 synonymous_variant LOW transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415538 chr6D 1415538 C T C T 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415497 chr6D 1415497 G C G C 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415642 chr6D 1415642 C T C T 3 synonymous_variant LOW transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1411884 chr6D 1411884 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1413834 chr6D 1413834 T G T G 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415254 chr6D 1415254 T C T C 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1414376 chr6D 1414376 G A G A 3 synonymous_variant LOW transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1414982 chr6D 1414982 T A T A 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1414524 chr6D 1414524 T C T C 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1412022 chr6D 1412022 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1413407 chr6D 1413407 G A G A 3 synonymous_variant LOW transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415325 chr6D 1415325 G C G C 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1412224 chr6D 1412224 T A T A 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1415584 chr6D 1415584 C T C T 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1414825 chr6D 1414825 G A G A 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G002200 chr6D_1413033 chr6D 1413033 T G T G 3 missense_variant MODERATE transcript non_Triplet 1412028 1415981 3954 19 0.480526049570056 RFvsST 397372 295601027 295203656 no 1025.84477242802 TraesCS6D01G003200 chr6D_1773254 chr6D 1773254 G T G T 3 synonymous_variant LOW transcript non_Triplet 1769875 1774534 4660 4 0.0858369098712446 RFvsST 397372 295601027 295203656 no 313.332856297377 TraesCS6D01G003200 chr6D_1769837 chr6D 1769837 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 1769875 1774534 4660 4 0.0858369098712446 RFvsST 397372 295601027 295203656 no 313.332856297377 TraesCS6D01G003200 chr6D_1771908 chr6D 1771908 C G C G 3 synonymous_variant LOW transcript non_Triplet 1769875 1774534 4660 4 0.0858369098712446 RFvsST 397372 295601027 295203656 no 313.332856297377 TraesCS6D01G003200 chr6D_1770919 chr6D 1770919 T C T C 3 synonymous_variant LOW transcript non_Triplet 1769875 1774534 4660 4 0.0858369098712446 RFvsST 397372 295601027 295203656 no 313.332856297377 TraesCS6D01G003300 chr6D_1783002 chr6D 1783002 G A G A 3 missense_variant MODERATE transcript unique_Triplet 1779697 1783811 4115 2 0.0486026731470231 RFvsST 397372 295601027 295203656 no 80.394616851448 TraesCS6D01G003300 chr6D_1783443 chr6D 1783443 T C T C 3 missense_variant MODERATE transcript unique_Triplet 1779697 1783811 4115 2 0.0486026731470231 RFvsST 397372 295601027 295203656 no 80.394616851448 TraesCS6D01G003900 chr6D_2050951 chr6D 2050951 A G A G 3 synonymous_variant LOW transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2050810 chr6D 2050810 C G C G 3 missense_variant MODERATE transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2050239 chr6D 2050239 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2051362 chr6D 2051362 A G A G 3 synonymous_variant LOW transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2050146 chr6D 2050146 G C G C 3 missense_variant MODERATE transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2051236 chr6D 2051236 G T G T 3 missense_variant MODERATE transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2050033 chr6D 2050033 T C T C 3 missense_variant MODERATE transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G003900 chr6D_2046991 chr6D 2046991 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 2046711 2051430 4720 8 0.169491525423729 RFvsST 397372 295601027 295203656 no 402.817977838839 TraesCS6D01G004700 chr6D_2241677 chr6D 2241677 C G C G 3 synonymous_variant LOW transcript non_Triplet 2240069 2244510 4442 1 0.0225123818099955 RFvsST 397372 295601027 295203656 no 21.7740678461928 TraesCS6D01G004900 chr6D_2268960 chr6D 2268960 C G C G 3 missense_variant MODERATE transcript non_Triplet 2265401 2269102 3702 2 0.0540248514316586 RFvsST 397372 295601027 295203656 no 361.920412228883 TraesCS6D01G004900 chr6D_2266571 chr6D 2266571 T C T C 3 synonymous_variant LOW transcript non_Triplet 2265401 2269102 3702 2 0.0540248514316586 RFvsST 397372 295601027 295203656 no 361.920412228883 TraesCS6D01G005100 chr6D_2273964 chr6D 2273964 C T C T 3 synonymous_variant LOW transcript unique_Triplet 2272826 2274302 1477 1 0.0677048070412999 RFvsST 397372 295601027 295203656 no 343.663838740428 TraesCS6D01G005500 chr6D_2356249 chr6D 2356249 G G A A 4 synonymous_variant LOW transcript non_Triplet 2354209 2356358 2150 1 0.0465116279069767 RFvsST 397372 295601027 295203656 no 107.669139045999 TraesCS6D01G005600 chr6D_2405785 chr6D 2405785 T C T C 3 missense_variant MODERATE transcript unique_Triplet 2399373 2409281 9909 4 0.0403673428196589 RFvsST 397372 295601027 295203656 no 2116.64288964614 TraesCS6D01G005600 chr6D_2407142 chr6D 2407142 C T C T 3 missense_variant MODERATE transcript unique_Triplet 2399373 2409281 9909 4 0.0403673428196589 RFvsST 397372 295601027 295203656 no 2116.64288964614 TraesCS6D01G005600 chr6D_2402596 chr6D 2402596 C T C T 3 synonymous_variant LOW transcript unique_Triplet 2399373 2409281 9909 4 0.0403673428196589 RFvsST 397372 295601027 295203656 no 2116.64288964614 TraesCS6D01G005600 chr6D_2406618 chr6D 2406618 G G A A 4 synonymous_variant LOW transcript unique_Triplet 2399373 2409281 9909 4 0.0403673428196589 RFvsST 397372 295601027 295203656 no 2116.64288964614 TraesCS6D01G008600 chr6D_3463001 chr6D 3463001 G G T T 4 missense_variant MODERATE transcript non_Triplet 3462639 3463343 705 4 0.567375886524823 RFvsST 397372 295601027 295203656 no 161.701321660487 TraesCS6D01G008600 chr6D_3463109 chr6D 3463109 C C T T 4 missense_variant MODERATE transcript non_Triplet 3462639 3463343 705 4 0.567375886524823 RFvsST 397372 295601027 295203656 no 161.701321660487 TraesCS6D01G008600 chr6D_3463024 chr6D 3463024 G G A A 4 synonymous_variant LOW transcript non_Triplet 3462639 3463343 705 4 0.567375886524823 RFvsST 397372 295601027 295203656 no 161.701321660487 TraesCS6D01G008600 chr6D_3462767 chr6D 3462767 C C T T 4 missense_variant MODERATE transcript non_Triplet 3462639 3463343 705 4 0.567375886524823 RFvsST 397372 295601027 295203656 no 161.701321660487 TraesCS6D01G009100 chr6D_3588997 chr6D 3588997 T T C C 4 missense_variant MODERATE transcript unique_Triplet 3587574 3591694 4121 2 0.0485319097306479 RFvsST 397372 295601027 295203656 no 14.352941233846 TraesCS6D01G009100 chr6D_3589367 chr6D 3589367 C C G G 4 missense_variant MODERATE transcript unique_Triplet 3587574 3591694 4121 2 0.0485319097306479 RFvsST 397372 295601027 295203656 no 14.352941233846 TraesCS6D01G009600 chr6D_3727522 chr6D 3727522 C C T T 4 missense_variant MODERATE transcript non_Triplet 3725949 3727842 1894 1 0.0527983104540655 RFvsST 397372 295601027 295203656 no 47.054768198799 TraesCS6D01G010100 chr6D_3853788 chr6D 3853788 C C T T 4 intron_variant MODIFIER transcript non_Triplet 3851857 3855678 3822 5 0.130821559392988 RFvsST 397372 295601027 295203656 no 9934.07968465054 TraesCS6D01G010100 chr6D_3855706 chr6D 3855706 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 3851857 3855678 3822 5 0.130821559392988 RFvsST 397372 295601027 295203656 no 9934.07968465054 TraesCS6D01G010100 chr6D_3855704 chr6D 3855704 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 3851857 3855678 3822 5 0.130821559392988 RFvsST 397372 295601027 295203656 no 9934.07968465054 TraesCS6D01G010100 chr6D_3853846 chr6D 3853846 A A C C 4 intron_variant MODIFIER transcript non_Triplet 3851857 3855678 3822 5 0.130821559392988 RFvsST 397372 295601027 295203656 no 9934.07968465054 TraesCS6D01G010100 chr6D_3853544 chr6D 3853544 G G T T 4 intron_variant MODIFIER transcript non_Triplet 3851857 3855678 3822 5 0.130821559392988 RFvsST 397372 295601027 295203656 no 9934.07968465054 TraesCS6D01G011500 chr6D_4409728 chr6D 4409728 G G T T 4 missense_variant MODERATE transcript non_Triplet 4404095 4410916 6822 1 0.0146584579302257 RFvsST 397372 295601027 295203656 no 176.516718702844 TraesCS6D01G011600 chr6D_4520882 chr6D 4520882 C C A A 4 synonymous_variant LOW transcript unique_Triplet 4517363 4521430 4068 2 0.0491642084562439 RFvsST 397372 295601027 295203656 no 93.7906692846462 TraesCS6D01G011600 chr6D_4520874 chr6D 4520874 C C A A 4 missense_variant MODERATE transcript unique_Triplet 4517363 4521430 4068 2 0.0491642084562439 RFvsST 397372 295601027 295203656 no 93.7906692846462 TraesCS6D01G011700 chr6D_4633871 chr6D 4633871 G G A A 4 synonymous_variant LOW transcript unique_Triplet 4629366 4635606 6241 4 0.0640922929017786 RFvsST 397372 295601027 295203656 no 156.004215785927 TraesCS6D01G011700 chr6D_4635232 chr6D 4635232 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4629366 4635606 6241 4 0.0640922929017786 RFvsST 397372 295601027 295203656 no 156.004215785927 TraesCS6D01G011700 chr6D_4635048 chr6D 4635048 T T C C 4 synonymous_variant LOW transcript unique_Triplet 4629366 4635606 6241 4 0.0640922929017786 RFvsST 397372 295601027 295203656 no 156.004215785927 TraesCS6D01G011700 chr6D_4635270 chr6D 4635270 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 4629366 4635606 6241 4 0.0640922929017786 RFvsST 397372 295601027 295203656 no 156.004215785927 TraesCS6D01G012200 chr6D_4773577 chr6D 4773577 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 4773848 4775641 1794 1 0.0557413600891862 RFvsST 397372 295601027 295203656 no 13874.4866070567 TraesCS6D01G012300 chr6D_4779093 chr6D 4779093 A A G G 4 synonymous_variant LOW transcript non_Triplet 4778415 4779224 810 1 0.123456790123457 RFvsST 397372 295601027 295203656 no 25.2954270445041 TraesCS6D01G015000 chr6D_6276289 chr6D 6276289 G G C C 4 missense_variant MODERATE transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6275875 chr6D 6275875 C C T T 4 synonymous_variant LOW transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6275899 chr6D 6275899 G G C C 4 synonymous_variant LOW transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6276353 chr6D 6276353 C C A A 4 synonymous_variant LOW transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6274316 chr6D 6274316 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6275283 chr6D 6275283 A A G G 4 missense_variant MODERATE transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G015000 chr6D_6274530 chr6D 6274530 A A G G 4 missense_variant MODERATE transcript unique_Triplet 6274331 6276650 2320 7 0.301724137931034 RFvsST 397372 295601027 295203656 no 222.705634227824 TraesCS6D01G016100 chr6D_6498292 chr6D 6498292 T T G G 4 missense_variant MODERATE transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6498938 chr6D 6498938 T T G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6498391 chr6D 6498391 C C T T 4 synonymous_variant LOW transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6497607 chr6D 6497607 A A G G 4 missense_variant MODERATE transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6498573 chr6D 6498573 A A G G 4 missense_variant MODERATE transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6499118 chr6D 6499118 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6499046 chr6D 6499046 G G C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6498187 chr6D 6498187 C C T T 4 synonymous_variant LOW transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G016100 chr6D_6497454 chr6D 6497454 C C G G 4 missense_variant MODERATE transcript non_Triplet 6495973 6499303 3331 9 0.270189132392675 RFvsST 397372 295601027 295203656 no 437.577559055404 TraesCS6D01G017000 chr6D_7098529 chr6D 7098529 C C A A 4 missense_variant MODERATE transcript unique_Triplet 7095015 7098638 3624 1 0.0275938189845475 RFvsST 397372 295601027 295203656 no 72.528720044114 TraesCS6D01G031900 chr6D_13491383 chr6D 13491383 C T C T 3 missense_variant MODERATE transcript non_Triplet 13490000 13492367 2368 1 0.0422297297297297 RFvsST 397372 295601027 295203656 no 374.227483328348 TraesCS6D01G048400 chr6D_23394416 chr6D 23394416 C G C G 3 synonymous_variant LOW transcript unique_Triplet 23394123 23395934 1812 1 0.0551876379690949 RFvsST 397372 295601027 295203656 no 263.126407812569 TraesCS6D01G050000 chr6D_24220090 chr6D 24220090 G A G A 3 synonymous_variant LOW transcript unique_Triplet 24219716 24220192 477 1 0.209643605870021 RFvsST 397372 295601027 295203656 no 78.8245730915046 TraesCS6D01G051000 chr6D_24403718 chr6D 24403718 G C G C 3 missense_variant MODERATE transcript non_Triplet 24390504 24405043 14540 1 0.00687757909215956 RFvsST 397372 295601027 295203656 no 299.152877600811 TraesCS6D01G053400 chr6D_25664427 chr6D 25664427 G G A A 4 missense_variant MODERATE transcript unique_Triplet 25661414 25665387 3974 1 0.0251635631605435 RFvsST 397372 295601027 295203656 no 61.6976054698205 TraesCS6D01G055600 chr6D_26359297 chr6D 26359297 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 26359612 26369030 9419 1 0.0106168383055526 RFvsST 397372 295601027 295203656 no 49.5254151792491 TraesCS6D01G063500 chr6D_29876159 chr6D 29876159 C T C T 3 missense_variant MODERATE transcript unique_Triplet 29875149 29880012 4864 1 0.0205592105263158 RFvsST 397372 295601027 295203656 no 189.511929644085 TraesCS6D01G067100 chr6D_32906367 chr6D 32906367 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 32902587 32904517 1931 1 0.0517866390471258 RFvsST 397372 295601027 295203656 no 26.5919468870211 TraesCS6D01G076200 chr6D_40543843 chr6D 40543843 C C T T 4 missense_variant MODERATE transcript unique_Triplet 40540753 40554460 13708 1 0.0072950102130143 RFvsST 397372 295601027 295203656 no 369.452120985383 TraesCS6D01G078500 chr6D_44100830 chr6D 44100830 G A G A 3 missense_variant MODERATE transcript non_Triplet 44089790 44103468 13679 1 0.00731047591198187 RFvsST 397372 295601027 295203656 no 108.710343328346 TraesCS6D01G081100 chr6D_46847081 chr6D 46847081 G G A A 4 missense_variant MODERATE transcript unique_Triplet 46846649 46851342 4694 1 0.0213037920749893 RFvsST 397372 295601027 295203656 no 273.207216701614 TraesCS6D01G089800 chr6D_55895561 chr6D 55895561 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 55882085 55895062 12978 3 0.0231160425335183 RFvsST 397372 295601027 295203656 no 25.7167432917075 TraesCS6D01G089800 chr6D_55895336 chr6D 55895336 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 55882085 55895062 12978 3 0.0231160425335183 RFvsST 397372 295601027 295203656 no 25.7167432917075 TraesCS6D01G089800 chr6D_55895315 chr6D 55895315 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 55882085 55895062 12978 3 0.0231160425335183 RFvsST 397372 295601027 295203656 no 25.7167432917075 TraesCS6D01G104100 chr6D_67659811 chr6D 67659811 A A T T 4 missense_variant MODERATE transcript non_Triplet 67658346 67660526 2181 1 0.0458505272810637 RFvsST 397372 295601027 295203656 no 164.2388360511 TraesCS6D01G108500 chr6D_73062162 chr6D 73062162 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 73063644 73067813 4170 1 0.0239808153477218 RFvsST 397372 295601027 295203656 no 358.672753463499 TraesCS6D01G132300 chr6D_99569281 chr6D 99569281 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 99552849 99566868 14020 1 0.00713266761768902 RFvsST 397372 295601027 295203656 no No_match TraesCS6D01G133900 chr6D_101490993 chr6D 101490993 A C A C 3 missense_variant MODERATE transcript unique_Triplet 101489759 101495428 5670 1 0.017636684303351 RFvsST 397372 295601027 295203656 no 95.8377941603053 TraesCS6D01G134900 chr6D_102851168 chr6D 102851168 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 102851275 102856190 4916 1 0.0203417412530513 RFvsST 397372 295601027 295203656 no 37.0830283403775 TraesCS6D01G137000 chr6D_105574185 chr6D 105574185 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 105574436 105580293 5858 1 0.0170706725844998 RFvsST 397372 295601027 295203656 no No_match TraesCS6D01G145100 chr6D_115543270 chr6D 115543270 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 115542924 115544888 1965 1 0.0508905852417303 RFvsST 397372 295601027 295203656 no 561.558880520654 TraesCS6D01G145200 chr6D_115546065 chr6D 115546065 T G T G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 115545832 115549930 4099 1 0.0243961941937058 RFvsST 397372 295601027 295203656 no 59.3052962703541 TraesCS6D01G146100 chr6D_116862878 chr6D 116862878 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 116856577 116862647 6071 1 0.0164717509471257 RFvsST 397372 295601027 295203656 no 61.427760149209 TraesCS6D01G153700 chr6D_128084728 chr6D 128084728 C C T T 4 synonymous_variant LOW transcript unique_Triplet 128084183 128095426 11244 1 0.00889363215937389 RFvsST 397372 295601027 295203656 no 94.5799764176565 TraesCS6D01G159100 chr6D_136128463 chr6D 136128463 A C A C 3 missense_variant MODERATE transcript unique_Triplet 136128321 136129512 1192 1 0.0838926174496644 RFvsST 397372 295601027 295203656 no 489.147903677464 TraesCS6D01G166200 chr6D_147239604 chr6D 147239604 C C A A 4 missense_variant MODERATE transcript non_Triplet 147236816 147241650 4835 1 0.0206825232678387 RFvsST 397372 295601027 295203656 no 159.235710937581 TraesCS6D01G167100 chr6D_149643672 chr6D 149643672 T T C C 4 missense_variant MODERATE transcript non_Triplet 149643650 149647705 4056 1 0.02465483234714 RFvsST 397372 295601027 295203656 no 12.3947518833024 TraesCS6D01G169600 chr6D_156021293 chr6D 156021293 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 156012932 156017271 4340 1 0.0230414746543779 RFvsST 397372 295601027 295203656 no 2.0025558398702 TraesCS6D01G170100 chr6D_156571634 chr6D 156571634 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 156563113 156571544 8432 1 0.0118595825426945 RFvsST 397372 295601027 295203656 no 221.08140117336 TraesCS6D01G173900 chr6D_162972427 chr6D 162972427 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 162971782 162976419 4638 1 0.0215610176800345 RFvsST 397372 295601027 295203656 no 198.38288263775 TraesCS6D01G176700 chr6D_174394801 chr6D 174394801 G A G A 3 intron_variant MODIFIER transcript non_Triplet 174374103 174399981 25879 2 0.00772827389002666 RFvsST 397372 295601027 295203656 no 2898.33880020867 TraesCS6D01G176700 chr6D_174395315 chr6D 174395315 G A G A 3 intron_variant MODIFIER transcript non_Triplet 174374103 174399981 25879 2 0.00772827389002666 RFvsST 397372 295601027 295203656 no 2898.33880020867 TraesCS6D01G176800 chr6D_174618378 chr6D 174618378 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 174618777 174635981 17205 1 0.00581226387678001 RFvsST 397372 295601027 295203656 no 39.2828985998724 TraesCS6D01G179400 chr6D_193556252 chr6D 193556252 G G T T 4 missense_variant MODERATE transcript non_Triplet 193556154 193573357 17204 1 0.00581260172053011 RFvsST 397372 295601027 295203656 no 175.217649864164 TraesCS6D01G180000 chr6D_197314683 chr6D 197314683 G A G A 3 synonymous_variant LOW transcript non_Triplet 197312868 197317510 4643 1 0.0215377988369589 RFvsST 397372 295601027 295203656 no 330.996364919393 TraesCS6D01G180100 chr6D_198603154 chr6D 198603154 C T C T 3 missense_variant MODERATE transcript non_Triplet 198601725 198603325 1601 1 0.0624609618988132 RFvsST 397372 295601027 295203656 no 101.88734324823 TraesCS6D01G349300 chr6D_447057972 chr6D 447057972 G G T T 4 missense_variant MODERATE transcript non_Triplet 447057643 447058329 687 1 0.145560407569141 RFvsST 413072864 473418765 60345902 no 160.152142664309 TraesCS6D01G350100 chr6D_447841053 chr6D 447841053 C C T T 4 missense_variant MODERATE transcript unique_Triplet 447840803 447845094 4292 1 0.0232991612301957 RFvsST 413072864 473418765 60345902 no 101.340924509418 TraesCS6D01G352400 chr6D_448780992 chr6D 448780992 G G A A 4 synonymous_variant LOW transcript unique_Triplet 448779686 448782017 2332 1 0.0428816466552316 RFvsST 413072864 473418765 60345902 no 68.6201162208503 TraesCS6D01G353300 chr6D_449186975 chr6D 449186975 G A G A 3 synonymous_variant LOW transcript non_Triplet 449185543 449189554 4012 1 0.0249252243270189 RFvsST 413072864 473418765 60345902 no 699.876249486502 TraesCS6D01G355000 chr6D_450104726 chr6D 450104726 G G A A 4 synonymous_variant LOW transcript unique_Triplet 450100144 450105614 5471 1 0.0182781941144215 RFvsST 413072864 473418765 60345902 no 16.4055162374573 TraesCS6D01G357400 chr6D_451045498 chr6D 451045498 C T C T 3 missense_variant MODERATE transcript unique_Triplet 451036141 451048980 12840 1 0.00778816199376947 RFvsST 413072864 473418765 60345902 no 38.0029762379625 TraesCS6D01G358700 chr6D_451555957 chr6D 451555957 T C T C 3 missense_variant MODERATE transcript unique_Triplet 451555134 451557304 2171 1 0.0460617227084293 RFvsST 413072864 473418765 60345902 no 209.614198069306 TraesCS6D01G361400 chr6D_452484299 chr6D 452484299 C G C G 3 missense_variant MODERATE transcript non_Triplet 452483344 452485884 2541 1 0.0393545848091303 RFvsST 413072864 473418765 60345902 no 529.887682570206 TraesCS6D01G371900 chr6D_457141711 chr6D 457141711 G T G T 3 missense_variant MODERATE transcript unique_Triplet 457139050 457141822 2773 2 0.0721240533717995 RFvsST 413072864 473418765 60345902 no 395.578422163943 TraesCS6D01G371900 chr6D_457139089 chr6D 457139089 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 457139050 457141822 2773 2 0.0721240533717995 RFvsST 413072864 473418765 60345902 no 395.578422163943 TraesCS6D01G372900 chr6D_458016278 chr6D 458016278 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 458017517 458019287 1771 1 0.0564652738565782 RFvsST 413072864 473418765 60345902 no 51.1126139041087 TraesCS6D01G374200 chr6D_458758378 chr6D 458758378 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 458758522 458762756 4235 5 0.118063754427391 RFvsST 413072864 473418765 60345902 no 3305.3908588403 TraesCS6D01G374200 chr6D_458762719 chr6D 458762719 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 458758522 458762756 4235 5 0.118063754427391 RFvsST 413072864 473418765 60345902 no 3305.3908588403 TraesCS6D01G374200 chr6D_458761682 chr6D 458761682 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 458758522 458762756 4235 5 0.118063754427391 RFvsST 413072864 473418765 60345902 no 3305.3908588403 TraesCS6D01G374200 chr6D_458762739 chr6D 458762739 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 458758522 458762756 4235 5 0.118063754427391 RFvsST 413072864 473418765 60345902 no 3305.3908588403 TraesCS6D01G374200 chr6D_458758385 chr6D 458758385 A T A T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 458758522 458762756 4235 5 0.118063754427391 RFvsST 413072864 473418765 60345902 no 3305.3908588403 TraesCS6D01G374400 chr6D_458769709 chr6D 458769709 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 458766219 458769868 3650 4 0.10958904109589 RFvsST 413072864 473418765 60345902 no 144.451594961953 TraesCS6D01G374400 chr6D_458768773 chr6D 458768773 T G T G 3 synonymous_variant LOW transcript unique_Triplet 458766219 458769868 3650 4 0.10958904109589 RFvsST 413072864 473418765 60345902 no 144.451594961953 TraesCS6D01G374400 chr6D_458768740 chr6D 458768740 A G A G 3 synonymous_variant LOW transcript unique_Triplet 458766219 458769868 3650 4 0.10958904109589 RFvsST 413072864 473418765 60345902 no 144.451594961953 TraesCS6D01G374400 chr6D_458766563 chr6D 458766563 A C A C 3 synonymous_variant LOW transcript unique_Triplet 458766219 458769868 3650 4 0.10958904109589 RFvsST 413072864 473418765 60345902 no 144.451594961953 TraesCS6D01G376900 chr6D_459695762 chr6D 459695762 G A G A 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459694275 chr6D 459694275 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459699557 chr6D 459699557 A G A G 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459698556 chr6D 459698556 C G C G 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459699724 chr6D 459699724 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459698315 chr6D 459698315 C A C A 3 missense_variant MODERATE transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459697732 chr6D 459697732 A C A C 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459697740 chr6D 459697740 A G A G 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459697970 chr6D 459697970 T C T C 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459698562 chr6D 459698562 C T C T 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459698808 chr6D 459698808 C A C A 3 missense_variant MODERATE transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459698816 chr6D 459698816 A G A G 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G376900 chr6D_459697402 chr6D 459697402 G A G A 3 synonymous_variant LOW transcript unique_Triplet 459694287 459699715 5429 13 0.239454779885798 RFvsST 413072864 473418765 60345902 no 57.7431048686179 TraesCS6D01G377700 chr6D_460468690 chr6D 460468690 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 460466174 460467736 1563 1 0.0639795265515035 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G377800 chr6D_460469678 chr6D 460469678 C T C T 3 synonymous_variant LOW transcript non_Triplet 460468695 460474237 5543 2 0.0360815442900956 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G377800 chr6D_460469089 chr6D 460469089 C G C G 3 synonymous_variant LOW transcript non_Triplet 460468695 460474237 5543 2 0.0360815442900956 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G377900 chr6D_460574183 chr6D 460574183 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G377900 chr6D_460574175 chr6D 460574175 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G377900 chr6D_460573485 chr6D 460573485 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G377900 chr6D_460574199 chr6D 460574199 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G377900 chr6D_460574235 chr6D 460574235 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G377900 chr6D_460572421 chr6D 460572421 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 460567642 460572405 4764 6 0.125944584382872 RFvsST 413072864 473418765 60345902 no 154.686260224196 TraesCS6D01G378000 chr6D_460574254 chr6D 460574254 G A G A 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 460573217 460574626 1410 1 0.0709219858156028 RFvsST 413072864 473418765 60345902 no 6433.02929693895 TraesCS6D01G378200 chr6D_460722134 chr6D 460722134 A G A G 3 missense_variant MODERATE transcript unique_Triplet 460718239 460722277 4039 1 0.0247586036147561 RFvsST 413072864 473418765 60345902 no 23.2462782026638 TraesCS6D01G378300 chr6D_460732952 chr6D 460732952 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 460733074 460734939 1866 2 0.107181136120043 RFvsST 413072864 473418765 60345902 no 391.699820095383 TraesCS6D01G378300 chr6D_460733217 chr6D 460733217 C T C T 3 synonymous_variant LOW transcript unique_Triplet 460733074 460734939 1866 2 0.107181136120043 RFvsST 413072864 473418765 60345902 no 391.699820095383 TraesCS6D01G378400 chr6D_460736657 chr6D 460736657 G A G A 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460739913 chr6D 460739913 C G C G 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460736062 chr6D 460736062 G C G C 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460735966 chr6D 460735966 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460740054 chr6D 460740054 C G C G 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460740045 chr6D 460740045 C G C G 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460739706 chr6D 460739706 G C G C 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460736630 chr6D 460736630 G A G A 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460736071 chr6D 460736071 C T C T 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460740048 chr6D 460740048 C G C G 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378400 chr6D_460739607 chr6D 460739607 A G A G 3 synonymous_variant LOW transcript unique_Triplet 460735852 460740130 4279 11 0.25706940874036 RFvsST 413072864 473418765 60345902 no 271.434346053238 TraesCS6D01G378500 chr6D_460746205 chr6D 460746205 T C T C 3 synonymous_variant LOW transcript unique_Triplet 460741098 460746271 5174 4 0.0773096250483185 RFvsST 413072864 473418765 60345902 no 40.1379364856772 TraesCS6D01G378500 chr6D_460743231 chr6D 460743231 C A C A 3 synonymous_variant LOW transcript unique_Triplet 460741098 460746271 5174 4 0.0773096250483185 RFvsST 413072864 473418765 60345902 no 40.1379364856772 TraesCS6D01G378500 chr6D_460746169 chr6D 460746169 A T A T 3 synonymous_variant LOW transcript unique_Triplet 460741098 460746271 5174 4 0.0773096250483185 RFvsST 413072864 473418765 60345902 no 40.1379364856772 TraesCS6D01G378500 chr6D_460743235 chr6D 460743235 A G A G 3 missense_variant MODERATE transcript unique_Triplet 460741098 460746271 5174 4 0.0773096250483185 RFvsST 413072864 473418765 60345902 no 40.1379364856772 TraesCS6D01G379300 chr6D_461010449 chr6D 461010449 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 461006929 461010430 3502 2 0.0571102227298686 RFvsST 413072864 473418765 60345902 no 7.06527426031139 TraesCS6D01G379300 chr6D_461010134 chr6D 461010134 T C T C 3 missense_variant MODERATE transcript unique_Triplet 461006929 461010430 3502 2 0.0571102227298686 RFvsST 413072864 473418765 60345902 no 7.06527426031139 TraesCS6D01G379800 chr6D_461359115 chr6D 461359115 G T G T 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461357908 chr6D 461357908 T C T C 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461357637 chr6D 461357637 G C G C 3 missense_variant MODERATE transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461357678 chr6D 461357678 C T C T 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461355105 chr6D 461355105 C T C T 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461356622 chr6D 461356622 A T A T 3 missense_variant MODERATE transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461354580 chr6D 461354580 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461355869 chr6D 461355869 A G A G 3 missense_variant MODERATE transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461354910 chr6D 461354910 T C T C 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461354757 chr6D 461354757 C G C G 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461355153 chr6D 461355153 T C T C 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461354862 chr6D 461354862 T A T A 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G379800 chr6D_461354931 chr6D 461354931 A G A G 3 synonymous_variant LOW transcript unique_Triplet 461354602 461359342 4741 13 0.274203754482177 RFvsST 413072864 473418765 60345902 no 387.154994160588 TraesCS6D01G380000 chr6D_461391393 chr6D 461391393 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 461387202 461388215 1014 3 0.29585798816568 RFvsST 413072864 473418765 60345902 no 18.7790941502241 TraesCS6D01G380000 chr6D_461391395 chr6D 461391395 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 461387202 461388215 1014 3 0.29585798816568 RFvsST 413072864 473418765 60345902 no 18.7790941502241 TraesCS6D01G380000 chr6D_461391337 chr6D 461391337 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 461387202 461388215 1014 3 0.29585798816568 RFvsST 413072864 473418765 60345902 no 18.7790941502241 TraesCS6D01G380100 chr6D_461394178 chr6D 461394178 T C T C 3 synonymous_variant LOW transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380100 chr6D_461396910 chr6D 461396910 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380100 chr6D_461397491 chr6D 461397491 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380100 chr6D_461398376 chr6D 461398376 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380100 chr6D_461391477 chr6D 461391477 G G A A 4 synonymous_variant LOW transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380100 chr6D_461397073 chr6D 461397073 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461391468 461396506 5039 6 0.119071244294503 RFvsST 413072864 473418765 60345902 no 440.653386980751 TraesCS6D01G380200 chr6D_461418035 chr6D 461418035 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 461415477 461419568 4092 5 0.122189638318671 RFvsST 413072864 473418765 60345902 no 141.659403500921 TraesCS6D01G380200 chr6D_461415370 chr6D 461415370 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 461415477 461419568 4092 5 0.122189638318671 RFvsST 413072864 473418765 60345902 no 141.659403500921 TraesCS6D01G380200 chr6D_461419900 chr6D 461419900 C G C G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 461415477 461419568 4092 5 0.122189638318671 RFvsST 413072864 473418765 60345902 no 141.659403500921 TraesCS6D01G380200 chr6D_461418709 chr6D 461418709 T G T G 3 missense_variant MODERATE transcript nonUnique_Triplet 461415477 461419568 4092 5 0.122189638318671 RFvsST 413072864 473418765 60345902 no 141.659403500921 TraesCS6D01G380200 chr6D_461415437 chr6D 461415437 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 461415477 461419568 4092 5 0.122189638318671 RFvsST 413072864 473418765 60345902 no 141.659403500921 TraesCS6D01G380300 chr6D_461455293 chr6D 461455293 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 461449512 461454632 5121 1 0.0195274360476469 RFvsST 413072864 473418765 60345902 no 2.19790092666435 TraesCS6D01G380400 chr6D_461455673 chr6D 461455673 T C T C 3 missense_variant MODERATE transcript unique_Triplet 461450616 461456569 5954 2 0.0335908632851864 RFvsST 413072864 473418765 60345902 no 141.563782525127 TraesCS6D01G380400 chr6D_461455732 chr6D 461455732 A G A G 3 synonymous_variant LOW transcript unique_Triplet 461450616 461456569 5954 2 0.0335908632851864 RFvsST 413072864 473418765 60345902 no 141.563782525127 TraesCS6D01G381100 chr6D_461654395 chr6D 461654395 T C T C 3 synonymous_variant LOW transcript non_Triplet 461653241 461657024 3784 2 0.0528541226215645 RFvsST 413072864 473418765 60345902 no 138.569734302285 TraesCS6D01G381100 chr6D_461654902 chr6D 461654902 T A T A 3 missense_variant MODERATE transcript non_Triplet 461653241 461657024 3784 2 0.0528541226215645 RFvsST 413072864 473418765 60345902 no 138.569734302285 TraesCS6D01G381200 chr6D_461712122 chr6D 461712122 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 461706124 461707380 1257 1 0.0795544948289578 RFvsST 413072864 473418765 60345902 no 42.1023456590648 TraesCS6D01G381300 chr6D_461716323 chr6D 461716323 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461712333 461715900 3568 2 0.0560538116591928 RFvsST 413072864 473418765 60345902 no 913.361504534942 TraesCS6D01G381300 chr6D_461715990 chr6D 461715990 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 461712333 461715900 3568 2 0.0560538116591928 RFvsST 413072864 473418765 60345902 no 913.361504534942 TraesCS6D01G381700 chr6D_462013031 chr6D 462013031 A G A G 3 synonymous_variant LOW transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462014163 chr6D 462014163 C T C T 3 synonymous_variant LOW transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462013893 chr6D 462013893 A G A G 3 synonymous_variant LOW transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462014962 chr6D 462014962 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462014013 chr6D 462014013 G A G A 3 synonymous_variant LOW transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462013938 chr6D 462013938 C T C T 3 synonymous_variant LOW transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462014083 chr6D 462014083 G C G C 3 missense_variant MODERATE transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G381700 chr6D_462014069 chr6D 462014069 G C G C 3 missense_variant MODERATE transcript non_Triplet 462012555 462015089 2535 8 0.315581854043393 RFvsST 413072864 473418765 60345902 no 268.804098046656 TraesCS6D01G382700 chr6D_462275077 chr6D 462275077 G A G A 3 synonymous_variant LOW transcript non_Triplet 462274669 462277659 2991 3 0.100300902708124 RFvsST 413072864 473418765 60345902 no 71.9503973198494 TraesCS6D01G382700 chr6D_462275323 chr6D 462275323 C T C T 3 synonymous_variant LOW transcript non_Triplet 462274669 462277659 2991 3 0.100300902708124 RFvsST 413072864 473418765 60345902 no 71.9503973198494 TraesCS6D01G382700 chr6D_462275086 chr6D 462275086 T G T G 3 synonymous_variant LOW transcript non_Triplet 462274669 462277659 2991 3 0.100300902708124 RFvsST 413072864 473418765 60345902 no 71.9503973198494 TraesCS6D01G382800 chr6D_462317219 chr6D 462317219 T C T C 3 missense_variant MODERATE transcript unique_Triplet 462317119 462324790 7672 5 0.0651720542231491 RFvsST 413072864 473418765 60345902 no 120.635264604058 TraesCS6D01G382800 chr6D_462320115 chr6D 462320115 C T C T 3 synonymous_variant LOW transcript unique_Triplet 462317119 462324790 7672 5 0.0651720542231491 RFvsST 413072864 473418765 60345902 no 120.635264604058 TraesCS6D01G382800 chr6D_462318950 chr6D 462318950 G A G A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 462317119 462324790 7672 5 0.0651720542231491 RFvsST 413072864 473418765 60345902 no 120.635264604058 TraesCS6D01G382800 chr6D_462319300 chr6D 462319300 A G A G 3 missense_variant MODERATE transcript unique_Triplet 462317119 462324790 7672 5 0.0651720542231491 RFvsST 413072864 473418765 60345902 no 120.635264604058 TraesCS6D01G382800 chr6D_462317921 chr6D 462317921 G A G A 3 synonymous_variant LOW transcript unique_Triplet 462317119 462324790 7672 5 0.0651720542231491 RFvsST 413072864 473418765 60345902 no 120.635264604058 TraesCS6D01G383200 chr6D_462411561 chr6D 462411561 G A G A 3 synonymous_variant LOW transcript unique_Triplet 462411093 462414003 2911 2 0.0687049124012367 RFvsST 413072864 473418765 60345902 no 42.5875860457035 TraesCS6D01G383200 chr6D_462412735 chr6D 462412735 G A G A 3 synonymous_variant LOW transcript unique_Triplet 462411093 462414003 2911 2 0.0687049124012367 RFvsST 413072864 473418765 60345902 no 42.5875860457035 TraesCS6D01G383500 chr6D_462462424 chr6D 462462424 G A G A 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462466601 chr6D 462466601 T A T A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462465273 chr6D 462465273 G A G A 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462462421 chr6D 462462421 A G A G 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462465080 chr6D 462465080 C T C T 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462466036 chr6D 462466036 G A G A 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462461676 chr6D 462461676 C G C G 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462466661 chr6D 462466661 G C G C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462461531 chr6D 462461531 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462466480 chr6D 462466480 G C G C 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462466624 chr6D 462466624 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383500 chr6D_462464575 chr6D 462464575 T C T C 3 synonymous_variant LOW transcript non_Triplet 462461497 462466675 5179 12 0.231704962347944 RFvsST 413072864 473418765 60345902 no 94.7102936733427 TraesCS6D01G383600 chr6D_462486609 chr6D 462486609 G A G A 3 synonymous_variant LOW transcript unique_Triplet 462483712 462487539 3828 3 0.0783699059561128 RFvsST 413072864 473418765 60345902 no 234.235297970382 TraesCS6D01G383600 chr6D_462485147 chr6D 462485147 G T G T 3 missense_variant MODERATE transcript unique_Triplet 462483712 462487539 3828 3 0.0783699059561128 RFvsST 413072864 473418765 60345902 no 234.235297970382 TraesCS6D01G383600 chr6D_462486238 chr6D 462486238 C T C T 3 synonymous_variant LOW transcript unique_Triplet 462483712 462487539 3828 3 0.0783699059561128 RFvsST 413072864 473418765 60345902 no 234.235297970382 TraesCS6D01G383800 chr6D_462536965 chr6D 462536965 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 462536885 462540916 4032 1 0.0248015873015873 RFvsST 413072864 473418765 60345902 no 1146.9415492868 TraesCS6D01G384200 chr6D_462632139 chr6D 462632139 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 462624316 462631937 7622 2 0.0262398320650748 RFvsST 413072864 473418765 60345902 no 842.583637385643 TraesCS6D01G384200 chr6D_462624539 chr6D 462624539 T C T C 3 missense_variant MODERATE transcript unique_Triplet 462624316 462631937 7622 2 0.0262398320650748 RFvsST 413072864 473418765 60345902 no 842.583637385643 TraesCS6D01G384600 chr6D_462840863 chr6D 462840863 T C T C 3 missense_variant MODERATE transcript unique_Triplet 462839386 462841504 2119 2 0.0943841434638981 RFvsST 413072864 473418765 60345902 no 70.8193351577659 TraesCS6D01G384600 chr6D_462840359 chr6D 462840359 C T C T 3 synonymous_variant LOW transcript unique_Triplet 462839386 462841504 2119 2 0.0943841434638981 RFvsST 413072864 473418765 60345902 no 70.8193351577659 TraesCS6D01G384800 chr6D_462859526 chr6D 462859526 C T C T 3 synonymous_variant LOW transcript unique_Triplet 462856434 462859952 3519 1 0.0284171639670361 RFvsST 413072864 473418765 60345902 no 653.370602064794 TraesCS6D01G385400 chr6D_463447036 chr6D 463447036 C T C T 3 synonymous_variant LOW transcript unique_Triplet 463446130 463447701 1572 1 0.0636132315521628 RFvsST 413072864 473418765 60345902 no 713.485776577434 TraesCS6D01G385600 chr6D_463548491 chr6D 463548491 C T C T 3 missense_variant MODERATE transcript unique_Triplet 463547200 463549433 2234 2 0.0895255147717099 RFvsST 413072864 473418765 60345902 no 2948.60941429661 TraesCS6D01G385600 chr6D_463546984 chr6D 463546984 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 463547200 463549433 2234 2 0.0895255147717099 RFvsST 413072864 473418765 60345902 no 2948.60941429661 TraesCS6D01G385700 chr6D_463552899 chr6D 463552899 T A T A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552434 chr6D 463552434 A T A T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552377 chr6D 463552377 A T A T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552994 chr6D 463552994 T G T G 3 missense_variant MODERATE transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552974 chr6D 463552974 A G A G 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463555723 chr6D 463555723 T G T G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463555711 chr6D 463555711 G A G A 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463553304 chr6D 463553304 A T A T 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552581 chr6D 463552581 C T C T 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552740 chr6D 463552740 G A G A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463555643 chr6D 463555643 G A G A 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552731 chr6D 463552731 G A G A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552554 chr6D 463552554 C T C T 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552737 chr6D 463552737 G A G A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552878 chr6D 463552878 T A T A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552713 chr6D 463552713 G A G A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552286 chr6D 463552286 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552514 chr6D 463552514 C T C T 3 missense_variant MODERATE transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G385700 chr6D_463552596 chr6D 463552596 C A C A 3 synonymous_variant LOW transcript non_Triplet 463551947 463556022 4076 19 0.466143277723258 RFvsST 413072864 473418765 60345902 no 456.651727894412 TraesCS6D01G386100 chr6D_463743351 chr6D 463743351 G A G A 3 synonymous_variant LOW transcript non_Triplet 463742649 463746552 3904 3 0.076844262295082 RFvsST 413072864 473418765 60345902 no 124.504311612719 TraesCS6D01G386100 chr6D_463743339 chr6D 463743339 G A G A 3 synonymous_variant LOW transcript non_Triplet 463742649 463746552 3904 3 0.076844262295082 RFvsST 413072864 473418765 60345902 no 124.504311612719 TraesCS6D01G386100 chr6D_463743456 chr6D 463743456 A G A G 3 synonymous_variant LOW transcript non_Triplet 463742649 463746552 3904 3 0.076844262295082 RFvsST 413072864 473418765 60345902 no 124.504311612719 TraesCS6D01G386300 chr6D_463775474 chr6D 463775474 C G C G 3 missense_variant MODERATE transcript non_Triplet 463774414 463776031 1618 1 0.0618046971569839 RFvsST 413072864 473418765 60345902 no 912.944177613183 TraesCS6D01G387100 chr6D_464263895 chr6D 464263895 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 464259093 464260923 1831 5 0.273074822501365 RFvsST 413072864 473418765 60345902 no 32.845407267522 TraesCS6D01G387100 chr6D_464263983 chr6D 464263983 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 464259093 464260923 1831 5 0.273074822501365 RFvsST 413072864 473418765 60345902 no 32.845407267522 TraesCS6D01G387100 chr6D_464263997 chr6D 464263997 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 464259093 464260923 1831 5 0.273074822501365 RFvsST 413072864 473418765 60345902 no 32.845407267522 TraesCS6D01G387100 chr6D_464260616 chr6D 464260616 A C A C 3 synonymous_variant LOW transcript unique_Triplet 464259093 464260923 1831 5 0.273074822501365 RFvsST 413072864 473418765 60345902 no 32.845407267522 TraesCS6D01G387100 chr6D_464264354 chr6D 464264354 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 464259093 464260923 1831 5 0.273074822501365 RFvsST 413072864 473418765 60345902 no 32.845407267522 TraesCS6D01G387300 chr6D_464344612 chr6D 464344612 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464343809 464345023 1215 4 0.329218106995885 RFvsST 413072864 473418765 60345902 no 266.228551773279 TraesCS6D01G387300 chr6D_464344641 chr6D 464344641 C T C T 3 missense_variant MODERATE transcript unique_Triplet 464343809 464345023 1215 4 0.329218106995885 RFvsST 413072864 473418765 60345902 no 266.228551773279 TraesCS6D01G387300 chr6D_464344324 chr6D 464344324 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464343809 464345023 1215 4 0.329218106995885 RFvsST 413072864 473418765 60345902 no 266.228551773279 TraesCS6D01G387300 chr6D_464344672 chr6D 464344672 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464343809 464345023 1215 4 0.329218106995885 RFvsST 413072864 473418765 60345902 no 266.228551773279 TraesCS6D01G387900 chr6D_464674568 chr6D 464674568 C T C T 3 synonymous_variant LOW transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G387900 chr6D_464674481 chr6D 464674481 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G387900 chr6D_464675363 chr6D 464675363 C G C G 3 missense_variant MODERATE transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G387900 chr6D_464674401 chr6D 464674401 G C G C 3 missense_variant MODERATE transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G387900 chr6D_464674723 chr6D 464674723 G C G C 3 missense_variant MODERATE transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G387900 chr6D_464675297 chr6D 464675297 C G C G 3 synonymous_variant LOW transcript unique_Triplet 464674283 464675383 1101 6 0.544959128065395 RFvsST 413072864 473418765 60345902 no 163.008377134052 TraesCS6D01G388000 chr6D_464712999 chr6D 464712999 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388000 chr6D_464713817 chr6D 464713817 G A G A 3 synonymous_variant LOW transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388000 chr6D_464717051 chr6D 464717051 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388000 chr6D_464714150 chr6D 464714150 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388000 chr6D_464713742 chr6D 464713742 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388000 chr6D_464714156 chr6D 464714156 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464713006 464716990 3985 6 0.150564617314931 RFvsST 413072864 473418765 60345902 no 299.144940241241 TraesCS6D01G388300 chr6D_464738719 chr6D 464738719 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 464735327 464737795 2469 1 0.0405022276225192 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G388400 chr6D_464742163 chr6D 464742163 C T C T 3 synonymous_variant LOW transcript unique_Triplet 464738767 464743527 4761 3 0.0630119722747322 RFvsST 413072864 473418765 60345902 no 65.6164318135216 TraesCS6D01G388400 chr6D_464742793 chr6D 464742793 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464738767 464743527 4761 3 0.0630119722747322 RFvsST 413072864 473418765 60345902 no 65.6164318135216 TraesCS6D01G388400 chr6D_464742818 chr6D 464742818 C T C T 3 missense_variant MODERATE transcript unique_Triplet 464738767 464743527 4761 3 0.0630119722747322 RFvsST 413072864 473418765 60345902 no 65.6164318135216 TraesCS6D01G388500 chr6D_464749321 chr6D 464749321 A G A G 3 synonymous_variant LOW transcript non_Triplet 464747213 464749384 2172 2 0.0920810313075506 RFvsST 413072864 473418765 60345902 no 13.5964061708963 TraesCS6D01G388500 chr6D_464749361 chr6D 464749361 A G A G 3 missense_variant MODERATE transcript non_Triplet 464747213 464749384 2172 2 0.0920810313075506 RFvsST 413072864 473418765 60345902 no 13.5964061708963 TraesCS6D01G389000 chr6D_464832957 chr6D 464832957 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 464830250 464831081 832 1 0.120192307692308 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G389100 chr6D_464835032 chr6D 464835032 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464833040 464838221 5182 3 0.0578927055191046 RFvsST 413072864 473418765 60345902 no 155.205957767871 TraesCS6D01G389100 chr6D_464835059 chr6D 464835059 A G A G 3 synonymous_variant LOW transcript unique_Triplet 464833040 464838221 5182 3 0.0578927055191046 RFvsST 413072864 473418765 60345902 no 155.205957767871 TraesCS6D01G389100 chr6D_464833812 chr6D 464833812 G A G A 3 synonymous_variant LOW transcript unique_Triplet 464833040 464838221 5182 3 0.0578927055191046 RFvsST 413072864 473418765 60345902 no 155.205957767871 TraesCS6D01G389200 chr6D_464949526 chr6D 464949526 G A G A 3 synonymous_variant LOW transcript unique_Triplet 464943853 464951043 7191 5 0.0695313586427479 RFvsST 413072864 473418765 60345902 no 245.569634087377 TraesCS6D01G389200 chr6D_464945576 chr6D 464945576 C G C G 3 missense_variant MODERATE transcript unique_Triplet 464943853 464951043 7191 5 0.0695313586427479 RFvsST 413072864 473418765 60345902 no 245.569634087377 TraesCS6D01G389200 chr6D_464950768 chr6D 464950768 T C T C 3 synonymous_variant LOW transcript unique_Triplet 464943853 464951043 7191 5 0.0695313586427479 RFvsST 413072864 473418765 60345902 no 245.569634087377 TraesCS6D01G389200 chr6D_464943892 chr6D 464943892 G A G A 3 synonymous_variant LOW transcript unique_Triplet 464943853 464951043 7191 5 0.0695313586427479 RFvsST 413072864 473418765 60345902 no 245.569634087377 TraesCS6D01G389200 chr6D_464944696 chr6D 464944696 G T G T 3 synonymous_variant LOW transcript unique_Triplet 464943853 464951043 7191 5 0.0695313586427479 RFvsST 413072864 473418765 60345902 no 245.569634087377 TraesCS6D01G389500 chr6D_465010279 chr6D 465010279 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 465010215 465011650 1436 1 0.0696378830083565 RFvsST 413072864 473418765 60345902 no 2053.39405803071 TraesCS6D01G389600 chr6D_465042993 chr6D 465042993 G A G A 3 synonymous_variant LOW transcript non_Triplet 465040502 465045963 5462 3 0.0549249359209081 RFvsST 413072864 473418765 60345902 no 18.8658476559316 TraesCS6D01G389600 chr6D_465040736 chr6D 465040736 A G A G 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 465040502 465045963 5462 3 0.0549249359209081 RFvsST 413072864 473418765 60345902 no 18.8658476559316 TraesCS6D01G389600 chr6D_465041504 chr6D 465041504 G A G A 3 synonymous_variant LOW transcript non_Triplet 465040502 465045963 5462 3 0.0549249359209081 RFvsST 413072864 473418765 60345902 no 18.8658476559316 TraesCS6D01G389800 chr6D_465073359 chr6D 465073359 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 465068079 465073329 5251 1 0.0190439916206437 RFvsST 413072864 473418765 60345902 no 12.159231773374 TraesCS6D01G390100 chr6D_465207190 chr6D 465207190 A G A G 3 missense_variant MODERATE transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465209222 chr6D 465209222 T A T A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465203622 chr6D 465203622 G A G A 3 synonymous_variant LOW transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465207423 chr6D 465207423 G C G C 3 missense_variant MODERATE transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465208005 chr6D 465208005 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465209086 chr6D 465209086 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465209065 chr6D 465209065 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465209224 chr6D 465209224 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390100 chr6D_465209125 chr6D 465209125 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 465203170 465207630 4461 9 0.201748486886348 RFvsST 413072864 473418765 60345902 no 379.686676800128 TraesCS6D01G390200 chr6D_465209448 chr6D 465209448 C T C T 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465209617 chr6D 465209617 C G C G 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210594 chr6D 465210594 C G C G 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210715 chr6D 465210715 G C G C 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210362 chr6D 465210362 C T C T 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465209621 chr6D 465209621 G A G A 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210317 chr6D 465210317 T C T C 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210239 chr6D 465210239 G A G A 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465209409 chr6D 465209409 G A G A 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465210320 chr6D 465210320 T A T A 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465209455 chr6D 465209455 T C T C 3 missense_variant MODERATE transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390200 chr6D_465209576 chr6D 465209576 A G A G 3 synonymous_variant LOW transcript unique_Triplet 465209318 465213805 4488 12 0.267379679144385 RFvsST 413072864 473418765 60345902 no 612.082640515786 TraesCS6D01G390600 chr6D_465743634 chr6D 465743634 A G A G 3 missense_variant MODERATE transcript non_Triplet 465742668 465745084 2417 5 0.206868018204386 RFvsST 413072864 473418765 60345902 no 348.752617804942 TraesCS6D01G390600 chr6D_465742705 chr6D 465742705 G T G T 3 missense_variant MODERATE transcript non_Triplet 465742668 465745084 2417 5 0.206868018204386 RFvsST 413072864 473418765 60345902 no 348.752617804942 TraesCS6D01G390600 chr6D_465743600 chr6D 465743600 A C A C 3 synonymous_variant LOW transcript non_Triplet 465742668 465745084 2417 5 0.206868018204386 RFvsST 413072864 473418765 60345902 no 348.752617804942 TraesCS6D01G390600 chr6D_465742631 chr6D 465742631 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 465742668 465745084 2417 5 0.206868018204386 RFvsST 413072864 473418765 60345902 no 348.752617804942 TraesCS6D01G390600 chr6D_465742938 chr6D 465742938 A T A T 3 missense_variant MODERATE transcript non_Triplet 465742668 465745084 2417 5 0.206868018204386 RFvsST 413072864 473418765 60345902 no 348.752617804942 TraesCS6D01G391100 chr6D_466268739 chr6D 466268739 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 466265905 466267686 1782 2 0.112233445566779 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G391100 chr6D_466268798 chr6D 466268798 T A T A 3 downstream_gene_variant MODIFIER transcript non_Triplet 466265905 466267686 1782 2 0.112233445566779 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G391300 chr6D_466331028 chr6D 466331028 T G T G 3 missense_variant MODERATE transcript non_Triplet 466328406 466331391 2986 1 0.0334896182183523 RFvsST 413072864 473418765 60345902 no 150.006717938615 TraesCS6D01G392000 chr6D_466738356 chr6D 466738356 C G C G 3 missense_variant MODERATE transcript non_Triplet 466734875 466738792 3918 4 0.102092904543134 RFvsST 413072864 473418765 60345902 no 77.440733621641 TraesCS6D01G392000 chr6D_466737784 chr6D 466737784 G A G A 3 intron_variant MODIFIER transcript non_Triplet 466734875 466738792 3918 4 0.102092904543134 RFvsST 413072864 473418765 60345902 no 77.440733621641 TraesCS6D01G392000 chr6D_466738584 chr6D 466738584 C T C T 3 missense_variant MODERATE transcript non_Triplet 466734875 466738792 3918 4 0.102092904543134 RFvsST 413072864 473418765 60345902 no 77.440733621641 TraesCS6D01G392000 chr6D_466736987 chr6D 466736987 T G T G 3 missense_variant MODERATE transcript non_Triplet 466734875 466738792 3918 4 0.102092904543134 RFvsST 413072864 473418765 60345902 no 77.440733621641 TraesCS6D01G392500 chr6D_467011877 chr6D 467011877 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467007577 467009607 2031 2 0.0984736582964057 RFvsST 413072864 473418765 60345902 no 29.6597473421063 TraesCS6D01G392500 chr6D_467011881 chr6D 467011881 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467007577 467009607 2031 2 0.0984736582964057 RFvsST 413072864 473418765 60345902 no 29.6597473421063 TraesCS6D01G392600 chr6D_467011280 chr6D 467011280 T G T G 3 synonymous_variant LOW transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467010627 chr6D 467010627 A G A G 3 missense_variant MODERATE transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467011588 chr6D 467011588 A T A T 3 missense_variant MODERATE transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467010231 chr6D 467010231 G C G C 3 missense_variant MODERATE transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467011554 chr6D 467011554 T C T C 3 synonymous_variant LOW transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467011268 chr6D 467011268 C G C G 3 synonymous_variant LOW transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392600 chr6D_467010308 chr6D 467010308 T C T C 3 synonymous_variant LOW transcript non_Triplet 467010060 467011685 1626 7 0.43050430504305 RFvsST 413072864 473418765 60345902 no 176.273147703993 TraesCS6D01G392900 chr6D_467049748 chr6D 467049748 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 467040765 467049708 8944 1 0.0111806797853309 RFvsST 413072864 473418765 60345902 no 37.1439938519905 TraesCS6D01G393000 chr6D_467042659 chr6D 467042659 C G C G 3 synonymous_variant LOW transcript non_Triplet 467042435 467042719 285 1 0.350877192982456 RFvsST 413072864 473418765 60345902 no 20.7454693686904 TraesCS6D01G393200 chr6D_467093754 chr6D 467093754 C T C T 3 synonymous_variant LOW transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467091576 chr6D 467091576 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467091655 chr6D 467091655 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467091653 chr6D 467091653 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467092273 chr6D 467092273 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467093397 chr6D 467093397 A G A G 3 synonymous_variant LOW transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393200 chr6D_467097102 chr6D 467097102 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467093259 467096984 3726 7 0.187869028448739 RFvsST 413072864 473418765 60345902 no 93.3939658200882 TraesCS6D01G393600 chr6D_467316792 chr6D 467316792 G C G C 3 missense_variant MODERATE transcript unique_Triplet 467313324 467318182 4859 1 0.0205803663305207 RFvsST 413072864 473418765 60345902 no 55.5161938473218 TraesCS6D01G393900 chr6D_467774148 chr6D 467774148 C T C T 3 missense_variant MODERATE transcript unique_Triplet 467772249 467778013 5765 4 0.0693842150910668 RFvsST 413072864 473418765 60345902 no 22.434743648218 TraesCS6D01G393900 chr6D_467776495 chr6D 467776495 C T C T 3 missense_variant MODERATE transcript unique_Triplet 467772249 467778013 5765 4 0.0693842150910668 RFvsST 413072864 473418765 60345902 no 22.434743648218 TraesCS6D01G393900 chr6D_467772903 chr6D 467772903 T C T C 3 synonymous_variant LOW transcript unique_Triplet 467772249 467778013 5765 4 0.0693842150910668 RFvsST 413072864 473418765 60345902 no 22.434743648218 TraesCS6D01G393900 chr6D_467774142 chr6D 467774142 A G A G 3 missense_variant MODERATE transcript unique_Triplet 467772249 467778013 5765 4 0.0693842150910668 RFvsST 413072864 473418765 60345902 no 22.434743648218 TraesCS6D01G394000 chr6D_467778187 chr6D 467778187 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467780212 467782384 2173 1 0.0460193281178095 RFvsST 413072864 473418765 60345902 no 21.4737351255392 TraesCS6D01G394800 chr6D_467917210 chr6D 467917210 T C T C 3 synonymous_variant LOW transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G394800 chr6D_467915053 chr6D 467915053 A T A T 3 missense_variant MODERATE transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G394800 chr6D_467917107 chr6D 467917107 T G T G 3 missense_variant MODERATE transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G394800 chr6D_467914818 chr6D 467914818 C T C T 3 missense_variant MODERATE transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G394800 chr6D_467917735 chr6D 467917735 C A C A 3 missense_variant MODERATE transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G394800 chr6D_467914443 chr6D 467914443 T A T A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 467914251 467919701 5451 6 0.110071546505228 RFvsST 413072864 473418765 60345902 no 554.944865603945 TraesCS6D01G395000 chr6D_467934040 chr6D 467934040 A T A T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467932204 467933751 1548 2 0.129198966408269 RFvsST 413072864 473418765 60345902 no 599.027437109115 TraesCS6D01G395000 chr6D_467934070 chr6D 467934070 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 467932204 467933751 1548 2 0.129198966408269 RFvsST 413072864 473418765 60345902 no 599.027437109115 TraesCS6D01G396300 chr6D_468810391 chr6D 468810391 T C T C 3 missense_variant MODERATE transcript non_Triplet 468809904 468811839 1936 2 0.103305785123967 RFvsST 413072864 473418765 60345902 no 164.65405005935 TraesCS6D01G396300 chr6D_468810116 chr6D 468810116 T C T C 3 missense_variant MODERATE transcript non_Triplet 468809904 468811839 1936 2 0.103305785123967 RFvsST 413072864 473418765 60345902 no 164.65405005935 TraesCS6D01G396400 chr6D_468834720 chr6D 468834720 C T C T 3 synonymous_variant LOW transcript non_Triplet 468833805 468836467 2663 1 0.0375516334960571 RFvsST 413072864 473418765 60345902 no 64.2363207905555 TraesCS6D01G397200 chr6D_469250389 chr6D 469250389 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 469246714 469250245 3532 1 0.028312570781427 RFvsST 413072864 473418765 60345902 no 921.054115872141 TraesCS6D01G398300 chr6D_469579129 chr6D 469579129 C T C T 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469574569 chr6D 469574569 A T A T 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469575052 chr6D 469575052 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469574842 chr6D 469574842 G A G A 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469578042 chr6D 469578042 G A G A 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469579404 chr6D 469579404 G A G A 3 missense_variant MODERATE transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469578841 chr6D 469578841 C T C T 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469574745 chr6D 469574745 C T C T 3 missense_variant MODERATE transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469574565 chr6D 469574565 T C T C 3 missense_variant MODERATE transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469578844 chr6D 469578844 C G C G 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G398300 chr6D_469578922 chr6D 469578922 A G A G 3 synonymous_variant LOW transcript unique_Triplet 469574266 469579717 5452 11 0.201760821716801 RFvsST 413072864 473418765 60345902 no 462.581506583144 TraesCS6D01G399000 chr6D_469830372 chr6D 469830372 A G A G 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469829239 chr6D 469829239 A G A G 3 synonymous_variant LOW transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469831337 chr6D 469831337 A G A G 3 synonymous_variant LOW transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469830378 chr6D 469830378 A T A T 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469831908 chr6D 469831908 C T C T 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469831812 chr6D 469831812 C T C T 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469829128 chr6D 469829128 G A G A 3 synonymous_variant LOW transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469829127 chr6D 469829127 T C T C 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469828574 chr6D 469828574 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469830325 chr6D 469830325 C T C T 3 synonymous_variant LOW transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399000 chr6D_469829447 chr6D 469829447 T C T C 3 missense_variant MODERATE transcript non_Triplet 469828444 469832045 3602 11 0.305385896724042 RFvsST 413072864 473418765 60345902 no 417.632638443021 TraesCS6D01G399100 chr6D_469914181 chr6D 469914181 A G A G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469914911 chr6D 469914911 T C T C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469913409 chr6D 469913409 G A G A 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916790 chr6D 469916790 T G T G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916696 chr6D 469916696 G A G A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469915062 chr6D 469915062 A G A G 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916881 chr6D 469916881 T A T A 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916566 chr6D 469916566 A T A T 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469912364 chr6D 469912364 C A C A 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469912007 chr6D 469912007 T A T A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469914738 chr6D 469914738 T G T G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469913891 chr6D 469913891 G A G A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916498 chr6D 469916498 A C A C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469918661 chr6D 469918661 A G A G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919537 chr6D 469919537 T C T C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469914586 chr6D 469914586 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469913454 chr6D 469913454 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469912140 chr6D 469912140 G A G A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469917977 chr6D 469917977 A C A C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919720 chr6D 469919720 A G A G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916902 chr6D 469916902 T C T C 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916642 chr6D 469916642 G A G A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469916370 chr6D 469916370 T C T C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469918642 chr6D 469918642 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469918522 chr6D 469918522 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469918997 chr6D 469918997 A G A G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469913367 chr6D 469913367 A C A C 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469915254 chr6D 469915254 A G A G 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469917032 chr6D 469917032 C G C G 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919218 chr6D 469919218 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919004 chr6D 469919004 T C T C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469912460 chr6D 469912460 C T C T 3 synonymous_variant LOW transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919531 chr6D 469919531 A C A C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919153 chr6D 469919153 G C G C 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G399100 chr6D_469919085 chr6D 469919085 G A G A 3 missense_variant MODERATE transcript non_Triplet 469911882 469919743 7862 35 0.445179343678453 RFvsST 413072864 473418765 60345902 no 991.427304529226 TraesCS6D01G401200 chr6D_470603786 chr6D 470603786 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 470602175 470602942 768 1 0.130208333333333 RFvsST 413072864 473418765 60345902 no 1440.49312814542 TraesCS6D01G401500 chr6D_470625838 chr6D 470625838 A G A G 3 synonymous_variant LOW transcript unique_Triplet 470625486 470630557 5072 3 0.0591482649842271 RFvsST 413072864 473418765 60345902 no 268.993339330355 TraesCS6D01G401500 chr6D_470630546 chr6D 470630546 C G C G 3 missense_variant MODERATE transcript unique_Triplet 470625486 470630557 5072 3 0.0591482649842271 RFvsST 413072864 473418765 60345902 no 268.993339330355 TraesCS6D01G401500 chr6D_470625841 chr6D 470625841 T A T A 3 synonymous_variant LOW transcript unique_Triplet 470625486 470630557 5072 3 0.0591482649842271 RFvsST 413072864 473418765 60345902 no 268.993339330355 TraesCS6D01G401600 chr6D_470636888 chr6D 470636888 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 470632933 470634909 1977 1 0.0505816894284269 RFvsST 413072864 473418765 60345902 no No_match TraesCS6D01G401700 chr6D_470640952 chr6D 470640952 C T C T 3 missense_variant MODERATE transcript unique_Triplet 470636964 470644381 7418 2 0.0269614451334592 RFvsST 413072864 473418765 60345902 no 307.424842065942 TraesCS6D01G401700 chr6D_470642573 chr6D 470642573 G A G A 3 missense_variant MODERATE transcript unique_Triplet 470636964 470644381 7418 2 0.0269614451334592 RFvsST 413072864 473418765 60345902 no 307.424842065942 TraesCS6D01G401900 chr6D_470684296 chr6D 470684296 C T C T 3 synonymous_variant LOW transcript unique_Triplet 470680418 470684735 4318 4 0.0926354793886058 RFvsST 413072864 473418765 60345902 no 137.19712659615 TraesCS6D01G401900 chr6D_470681451 chr6D 470681451 G A G A 3 synonymous_variant LOW transcript unique_Triplet 470680418 470684735 4318 4 0.0926354793886058 RFvsST 413072864 473418765 60345902 no 137.19712659615 TraesCS6D01G401900 chr6D_470681361 chr6D 470681361 C T C T 3 synonymous_variant LOW transcript unique_Triplet 470680418 470684735 4318 4 0.0926354793886058 RFvsST 413072864 473418765 60345902 no 137.19712659615 TraesCS6D01G401900 chr6D_470684074 chr6D 470684074 G A G A 3 missense_variant MODERATE transcript unique_Triplet 470680418 470684735 4318 4 0.0926354793886058 RFvsST 413072864 473418765 60345902 no 137.19712659615 TraesCS6D01G403900 chr6D_471919775 chr6D 471919775 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 471922215 471928826 6612 1 0.015124016938899 RFvsST 413072864 473418765 60345902 no 36.9938323611444 TraesCS7A01G000200 chr7A_244573 chr7A 244573 C C T T 4 missense_variant MODERATE transcript non_Triplet 242582 245625 3044 1 0.0328515111695138 RFvsST 238043 177323617 177085575 no 10.391365725113 TraesCS7A01G000300 chr7A_253660 chr7A 253660 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 250621 253649 3029 1 0.0330141961043249 RFvsST 238043 177323617 177085575 no 55.6179981296463 TraesCS7A01G001100 chr7A_761608 chr7A 761608 A A T T 4 missense_variant MODERATE transcript non_Triplet 760907 765104 4198 2 0.0476417341591234 RFvsST 238043 177323617 177085575 no 145.955743362767 TraesCS7A01G001100 chr7A_762949 chr7A 762949 T T C C 4 missense_variant MODERATE transcript non_Triplet 760907 765104 4198 2 0.0476417341591234 RFvsST 238043 177323617 177085575 no 145.955743362767 TraesCS7A01G002000 chr7A_1370541 chr7A 1370541 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 1370689 1376752 6064 2 0.0329815303430079 RFvsST 238043 177323617 177085575 no 161.815431376372 TraesCS7A01G002000 chr7A_1370530 chr7A 1370530 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 1370689 1376752 6064 2 0.0329815303430079 RFvsST 238043 177323617 177085575 no 161.815431376372 TraesCS7A01G014100 chr7A_6331058 chr7A 6331058 C C T T 4 synonymous_variant LOW transcript non_Triplet 6330529 6332933 2405 1 0.0415800415800416 RFvsST 238043 177323617 177085575 no 10.4479698890162 TraesCS7A01G014200 chr7A_6337821 chr7A 6337821 G G C C 4 missense_variant MODERATE transcript non_Triplet 6336227 6337972 1746 3 0.171821305841924 RFvsST 238043 177323617 177085575 no 189.391349647328 TraesCS7A01G014200 chr7A_6337814 chr7A 6337814 G G C C 4 synonymous_variant LOW transcript non_Triplet 6336227 6337972 1746 3 0.171821305841924 RFvsST 238043 177323617 177085575 no 189.391349647328 TraesCS7A01G014200 chr7A_6336262 chr7A 6336262 A C A C 3 missense_variant MODERATE transcript non_Triplet 6336227 6337972 1746 3 0.171821305841924 RFvsST 238043 177323617 177085575 no 189.391349647328 TraesCS7A01G014300 chr7A_6351124 chr7A 6351124 A C A C 3 synonymous_variant LOW transcript non_Triplet 6350656 6351360 705 1 0.141843971631206 RFvsST 238043 177323617 177085575 no 47.1343407007479 TraesCS7A01G014600 chr7A_6498670 chr7A 6498670 C C T T 4 missense_variant MODERATE transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6495624 chr7A 6495624 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6499763 chr7A 6499763 A G A G 3 synonymous_variant LOW transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6495504 chr7A 6495504 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6496110 chr7A 6496110 G A G A 3 synonymous_variant LOW transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6495596 chr7A 6495596 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6498856 chr7A 6498856 T T C C 4 synonymous_variant LOW transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6499790 chr7A 6499790 T C T C 3 synonymous_variant LOW transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6500370 chr7A 6500370 C C G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6497789 chr7A 6497789 A G A G 3 missense_variant MODERATE transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014600 chr7A_6495946 chr7A 6495946 G A G A 3 missense_variant MODERATE transcript non_Triplet 6495526 6500458 4933 11 0.222988039732414 RFvsST 238043 177323617 177085575 no 124.447055534229 TraesCS7A01G014900 chr7A_6536113 chr7A 6536113 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 6531769 6534459 2691 2 0.0743218134522482 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G014900 chr7A_6536248 chr7A 6536248 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 6531769 6534459 2691 2 0.0743218134522482 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G015000 chr7A_6541777 chr7A 6541777 G G A A 4 missense_variant MODERATE transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6544046 chr7A 6544046 G T G T 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6542466 chr7A 6542466 G G A A 4 missense_variant MODERATE transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6543827 chr7A 6543827 A G A G 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6543845 chr7A 6543845 T G T G 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6536583 chr7A 6536583 T C T C 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6543832 chr7A 6543832 C C T T 4 missense_variant MODERATE transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6543833 chr7A 6543833 G C G C 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6542618 chr7A 6542618 A A G G 4 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6544032 chr7A 6544032 A A T T 4 missense_variant MODERATE transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6543275 chr7A 6543275 C C A A 4 missense_variant MODERATE transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015000 chr7A_6544112 chr7A 6544112 A C A C 3 synonymous_variant LOW transcript non_Triplet 6536292 6544576 8285 12 0.144840072420036 RFvsST 238043 177323617 177085575 no 433.622345312382 TraesCS7A01G015200 chr7A_6655618 chr7A 6655618 T C T C 3 synonymous_variant LOW transcript non_Triplet 6651167 6658327 7161 3 0.0418935902806871 RFvsST 238043 177323617 177085575 no 224.576398529534 TraesCS7A01G015200 chr7A_6656501 chr7A 6656501 A G A G 3 missense_variant MODERATE transcript non_Triplet 6651167 6658327 7161 3 0.0418935902806871 RFvsST 238043 177323617 177085575 no 224.576398529534 TraesCS7A01G015200 chr7A_6656232 chr7A 6656232 G C G C 3 missense_variant MODERATE transcript non_Triplet 6651167 6658327 7161 3 0.0418935902806871 RFvsST 238043 177323617 177085575 no 224.576398529534 TraesCS7A01G015300 chr7A_6665649 chr7A 6665649 C T C T 3 synonymous_variant LOW transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6666048 chr7A 6666048 T T G G 4 synonymous_variant LOW transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6666030 chr7A 6666030 C T C T 3 synonymous_variant LOW transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6664892 chr7A 6664892 C T C T 3 intron_variant MODIFIER transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6666022 chr7A 6666022 G G A A 4 missense_variant MODERATE transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6664897 chr7A 6664897 T C T C 3 intron_variant MODIFIER transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015300 chr7A_6664736 chr7A 6664736 G A G A 3 intron_variant MODIFIER transcript non_Triplet 6663885 6667126 3242 7 0.215916101172116 RFvsST 238043 177323617 177085575 no 29.6597518431188 TraesCS7A01G015600 chr7A_6755751 chr7A 6755751 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 6751685 6754215 2531 1 0.0395100750691426 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G015700 chr7A_6756272 chr7A 6756272 A C A C 3 synonymous_variant LOW transcript non_Triplet 6755752 6756326 575 3 0.521739130434783 RFvsST 238043 177323617 177085575 no 8.55587307394732 TraesCS7A01G015700 chr7A_6756267 chr7A 6756267 C T C T 3 missense_variant MODERATE transcript non_Triplet 6755752 6756326 575 3 0.521739130434783 RFvsST 238043 177323617 177085575 no 8.55587307394732 TraesCS7A01G015700 chr7A_6755980 chr7A 6755980 C G C G 3 missense_variant MODERATE transcript non_Triplet 6755752 6756326 575 3 0.521739130434783 RFvsST 238043 177323617 177085575 no 8.55587307394732 TraesCS7A01G015800 chr7A_6768350 chr7A 6768350 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 6768806 6776212 7407 5 0.0675037127041987 RFvsST 238043 177323617 177085575 no 16.7704629339202 TraesCS7A01G015800 chr7A_6769635 chr7A 6769635 T C T C 3 synonymous_variant LOW transcript non_Triplet 6768806 6776212 7407 5 0.0675037127041987 RFvsST 238043 177323617 177085575 no 16.7704629339202 TraesCS7A01G015800 chr7A_6769629 chr7A 6769629 C T C T 3 synonymous_variant LOW transcript non_Triplet 6768806 6776212 7407 5 0.0675037127041987 RFvsST 238043 177323617 177085575 no 16.7704629339202 TraesCS7A01G015800 chr7A_6768145 chr7A 6768145 T A T A 3 upstream_gene_variant MODIFIER transcript non_Triplet 6768806 6776212 7407 5 0.0675037127041987 RFvsST 238043 177323617 177085575 no 16.7704629339202 TraesCS7A01G015800 chr7A_6768359 chr7A 6768359 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 6768806 6776212 7407 5 0.0675037127041987 RFvsST 238043 177323617 177085575 no 16.7704629339202 TraesCS7A01G016000 chr7A_6848553 chr7A 6848553 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 6845907 6848520 2614 2 0.0765110941086457 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G016000 chr7A_6849464 chr7A 6849464 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 6845907 6848520 2614 2 0.0765110941086457 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G017400 chr7A_7586702 chr7A 7586702 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 7584238 7586017 1780 2 0.112359550561798 RFvsST 238043 177323617 177085575 no 13.1684984057481 TraesCS7A01G017400 chr7A_7586807 chr7A 7586807 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 7584238 7586017 1780 2 0.112359550561798 RFvsST 238043 177323617 177085575 no 13.1684984057481 TraesCS7A01G017500 chr7A_7588325 chr7A 7588325 C C T T 4 synonymous_variant LOW transcript non_Triplet 7586891 7592459 5569 5 0.0897827258035554 RFvsST 238043 177323617 177085575 no 710.586673651944 TraesCS7A01G017500 chr7A_7588726 chr7A 7588726 C C T T 4 missense_variant MODERATE transcript non_Triplet 7586891 7592459 5569 5 0.0897827258035554 RFvsST 238043 177323617 177085575 no 710.586673651944 TraesCS7A01G017500 chr7A_7588676 chr7A 7588676 A G A G 3 synonymous_variant LOW transcript non_Triplet 7586891 7592459 5569 5 0.0897827258035554 RFvsST 238043 177323617 177085575 no 710.586673651944 TraesCS7A01G017500 chr7A_7592107 chr7A 7592107 A A C C 4 missense_variant MODERATE transcript non_Triplet 7586891 7592459 5569 5 0.0897827258035554 RFvsST 238043 177323617 177085575 no 710.586673651944 TraesCS7A01G017500 chr7A_7590163 chr7A 7590163 G A G A,T 3 missense_variant MODERATE transcript non_Triplet 7586891 7592459 5569 5 0.0897827258035554 RFvsST 238043 177323617 177085575 no 710.586673651944 TraesCS7A01G017600 chr7A_7594809 chr7A 7594809 A A G G 4 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7595277 chr7A 7595277 G G A A 4 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7594806 chr7A 7594806 T C T C 3 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7593483 chr7A 7593483 A G A G 3 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597484 chr7A 7597484 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597501 chr7A 7597501 A T A T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7594815 chr7A 7594815 G G A A 4 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597422 chr7A 7597422 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597477 chr7A 7597477 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597426 chr7A 7597426 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7597429 chr7A 7597429 G T G T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G017600 chr7A_7595262 chr7A 7595262 T T C C 4 synonymous_variant LOW transcript non_Triplet 7593176 7597725 4550 12 0.263736263736264 RFvsST 238043 177323617 177085575 no 154.698333012074 TraesCS7A01G018200 chr7A_7728451 chr7A 7728451 T G T G 3 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018200 chr7A_7730543 chr7A 7730543 C C T T 4 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018200 chr7A_7730498 chr7A 7730498 G G A A 4 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018200 chr7A_7730453 chr7A 7730453 G G T T 4 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018200 chr7A_7730531 chr7A 7730531 C C T T 4 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018200 chr7A_7727999 chr7A 7727999 G A G A 3 synonymous_variant LOW transcript non_Triplet 7727529 7730563 3035 6 0.197693574958814 RFvsST 238043 177323617 177085575 no 76.8765233695695 TraesCS7A01G018300 chr7A_7772645 chr7A 7772645 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 7765603 7768738 3136 1 0.0318877551020408 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G018400 chr7A_7772801 chr7A 7772801 A G A G 3 synonymous_variant LOW transcript non_Triplet 7772708 7774376 1669 2 0.11983223487118 RFvsST 238043 177323617 177085575 no 38.2124971404788 TraesCS7A01G018400 chr7A_7772997 chr7A 7772997 G G A A 4 missense_variant MODERATE transcript non_Triplet 7772708 7774376 1669 2 0.11983223487118 RFvsST 238043 177323617 177085575 no 38.2124971404788 TraesCS7A01G018500 chr7A_7817519 chr7A 7817519 A A G G 4 splice_region_variant&intron_variant LOW transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7817703 chr7A 7817703 T T G G 4 intron_variant MODIFIER transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7817370 chr7A 7817370 G G T T 4 missense_variant MODERATE transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7816036 chr7A 7816036 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7817850 chr7A 7817850 G A G A 3 missense_variant MODERATE transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7817471 chr7A 7817471 G T G T 3 missense_variant MODERATE transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7817881 chr7A 7817881 A A G G 4 missense_variant MODERATE transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7816086 chr7A 7816086 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7816216 chr7A 7816216 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G018500 chr7A_7815959 chr7A 7815959 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 7817259 7818638 1380 10 0.72463768115942 RFvsST 238043 177323617 177085575 no 54.8957767643049 TraesCS7A01G019200 chr7A_7920640 chr7A 7920640 G G T T 4 missense_variant MODERATE transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019200 chr7A_7920941 chr7A 7920941 C C T T 4 synonymous_variant LOW transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019200 chr7A_7920540 chr7A 7920540 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019200 chr7A_7920849 chr7A 7920849 G A G A 3 missense_variant MODERATE transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019200 chr7A_7920931 chr7A 7920931 G G C C 4 missense_variant MODERATE transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019200 chr7A_7921470 chr7A 7921470 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 7920627 7921331 705 6 0.851063829787234 RFvsST 238043 177323617 177085575 no 205.763194475091 TraesCS7A01G019400 chr7A_7938393 chr7A 7938393 C C T T 4 synonymous_variant LOW transcript non_Triplet 7937175 7938849 1675 1 0.0597014925373134 RFvsST 238043 177323617 177085575 no 78.4074824984821 TraesCS7A01G020100 chr7A_8254618 chr7A 8254618 T T A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254537 chr7A 8254537 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254904 chr7A 8254904 A A C C 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254856 chr7A 8254856 C C T T 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8260837 chr7A 8260837 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255192 chr7A 8255192 G G A A 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255174 chr7A 8255174 G G A A 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255426 chr7A 8255426 A A G G 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254675 chr7A 8254675 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255079 chr7A 8255079 T T C C 4 missense_variant MODERATE transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254670 chr7A 8254670 A A C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254795 chr7A 8254795 T T C C 4 missense_variant MODERATE transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255036 chr7A 8255036 A A G G 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8257254 chr7A 8257254 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254586 chr7A 8254586 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254536 chr7A 8254536 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254702 chr7A 8254702 G G A A 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8255404 chr7A 8255404 C C G G 4 missense_variant MODERATE transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8256028 chr7A 8256028 A A G G 4 missense_variant MODERATE transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254778 chr7A 8254778 G G A A 4 synonymous_variant LOW transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8257083 chr7A 8257083 T G T G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020100 chr7A_8254815 chr7A 8254815 A A T T 4 missense_variant MODERATE transcript non_Triplet 8254608 8257304 2697 22 0.815721171672228 RFvsST 238043 177323617 177085575 no 708.364309880156 TraesCS7A01G020200 chr7A_8262520 chr7A 8262520 C C G G 4 synonymous_variant LOW transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020200 chr7A_8262487 chr7A 8262487 C C G G 4 synonymous_variant LOW transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020200 chr7A_8260911 chr7A 8260911 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020200 chr7A_8260919 chr7A 8260919 G C G C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020200 chr7A_8261043 chr7A 8261043 G A G A 3 synonymous_variant LOW transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020200 chr7A_8260938 chr7A 8260938 C G C G 3 missense_variant MODERATE transcript non_Triplet 8260839 8262589 1751 6 0.342661336379212 RFvsST 238043 177323617 177085575 no 200.779027687805 TraesCS7A01G020300 chr7A_8264346 chr7A 8264346 C C T T 4 synonymous_variant LOW transcript non_Triplet 8263628 8265380 1753 1 0.0570450656018254 RFvsST 238043 177323617 177085575 no 63.9842874244871 TraesCS7A01G020400 chr7A_8375403 chr7A 8375403 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 8371945 8373304 1360 1 0.0735294117647059 RFvsST 238043 177323617 177085575 no 27.7945832173364 TraesCS7A01G020500 chr7A_8381245 chr7A 8381245 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 8373897 8376392 2496 1 0.0400641025641026 RFvsST 238043 177323617 177085575 no 10907.2147319949 TraesCS7A01G021000 chr7A_8549286 chr7A 8549286 C T C T 3 missense_variant MODERATE transcript non_Triplet 8548646 8550031 1386 4 0.288600288600289 RFvsST 238043 177323617 177085575 no 843.85305058833 TraesCS7A01G021000 chr7A_8549927 chr7A 8549927 A G A G 3 missense_variant MODERATE transcript non_Triplet 8548646 8550031 1386 4 0.288600288600289 RFvsST 238043 177323617 177085575 no 843.85305058833 TraesCS7A01G021000 chr7A_8548689 chr7A 8548689 T C T C 3 missense_variant MODERATE transcript non_Triplet 8548646 8550031 1386 4 0.288600288600289 RFvsST 238043 177323617 177085575 no 843.85305058833 TraesCS7A01G021000 chr7A_8549466 chr7A 8549466 A G A G 3 missense_variant MODERATE transcript non_Triplet 8548646 8550031 1386 4 0.288600288600289 RFvsST 238043 177323617 177085575 no 843.85305058833 TraesCS7A01G021300 chr7A_8693063 chr7A 8693063 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 8688673 8689641 969 4 0.412796697626419 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G021300 chr7A_8693209 chr7A 8693209 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 8688673 8689641 969 4 0.412796697626419 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G021300 chr7A_8692911 chr7A 8692911 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 8688673 8689641 969 4 0.412796697626419 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G021300 chr7A_8693085 chr7A 8693085 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 8688673 8689641 969 4 0.412796697626419 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G021400 chr7A_8694910 chr7A 8694910 C T C T 3 missense_variant MODERATE transcript non_Triplet 8691454 8702290 10837 5 0.0461382301374919 RFvsST 238043 177323617 177085575 no 298.694603441769 TraesCS7A01G021400 chr7A_8692106 chr7A 8692106 C T C T 3 synonymous_variant LOW transcript non_Triplet 8691454 8702290 10837 5 0.0461382301374919 RFvsST 238043 177323617 177085575 no 298.694603441769 TraesCS7A01G021400 chr7A_8692137 chr7A 8692137 G C G C 3 missense_variant MODERATE transcript non_Triplet 8691454 8702290 10837 5 0.0461382301374919 RFvsST 238043 177323617 177085575 no 298.694603441769 TraesCS7A01G021400 chr7A_8695326 chr7A 8695326 G A G A 3 intron_variant MODIFIER transcript non_Triplet 8691454 8702290 10837 5 0.0461382301374919 RFvsST 238043 177323617 177085575 no 298.694603441769 TraesCS7A01G021400 chr7A_8692085 chr7A 8692085 G C G C 3 synonymous_variant LOW transcript non_Triplet 8691454 8702290 10837 5 0.0461382301374919 RFvsST 238043 177323617 177085575 no 298.694603441769 TraesCS7A01G022600 chr7A_8914860 chr7A 8914860 T A T A 3 missense_variant MODERATE transcript non_Triplet 8914752 8917151 2400 1 0.0416666666666667 RFvsST 238043 177323617 177085575 no 143.21366191392 TraesCS7A01G027200 chr7A_10903043 chr7A 10903043 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027200 chr7A_10902317 chr7A 10902317 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027200 chr7A_10902221 chr7A 10902221 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027200 chr7A_10903052 chr7A 10903052 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027200 chr7A_10903232 chr7A 10903232 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027200 chr7A_10903253 chr7A 10903253 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 10905377 10907194 1818 6 0.33003300330033 RFvsST 238043 177323617 177085575 no 14.7203426936517 TraesCS7A01G027300 chr7A_10908669 chr7A 10908669 C C T T 4 missense_variant MODERATE transcript non_Triplet 10908122 10913016 4895 1 0.0204290091930541 RFvsST 238043 177323617 177085575 no 39.4507884947012 TraesCS7A01G027800 chr7A_11095065 chr7A 11095065 G G T T 4 missense_variant MODERATE transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11100740 chr7A 11100740 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11093958 chr7A 11093958 C T C T 3 synonymous_variant LOW transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11091892 chr7A 11091892 T C T C 3 missense_variant MODERATE transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11098695 chr7A 11098695 G A G A 3 missense_variant MODERATE transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11099209 chr7A 11099209 C C T T 4 missense_variant MODERATE transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11100360 chr7A 11100360 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027800 chr7A_11091760 chr7A 11091760 C C T T 4 missense_variant MODERATE transcript non_Triplet 11091678 11100180 8503 8 0.0940844407856051 RFvsST 238043 177323617 177085575 no 588.98683760188 TraesCS7A01G027900 chr7A_11105195 chr7A 11105195 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 11102410 11105153 2744 2 0.0728862973760933 RFvsST 238043 177323617 177085575 no 75.9960320382154 TraesCS7A01G027900 chr7A_11105245 chr7A 11105245 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 11102410 11105153 2744 2 0.0728862973760933 RFvsST 238043 177323617 177085575 no 75.9960320382154 TraesCS7A01G030000 chr7A_12178185 chr7A 12178185 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 12181529 12182185 657 1 0.15220700152207 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G030400 chr7A_12309325 chr7A 12309325 C C T T 4 missense_variant MODERATE transcript non_Triplet 12309312 12311136 1825 3 0.164383561643836 RFvsST 238043 177323617 177085575 no 124.02890172576 TraesCS7A01G030400 chr7A_12310259 chr7A 12310259 G A G A 3 missense_variant MODERATE transcript non_Triplet 12309312 12311136 1825 3 0.164383561643836 RFvsST 238043 177323617 177085575 no 124.02890172576 TraesCS7A01G030400 chr7A_12309322 chr7A 12309322 C T C T 3 missense_variant MODERATE transcript non_Triplet 12309312 12311136 1825 3 0.164383561643836 RFvsST 238043 177323617 177085575 no 124.02890172576 TraesCS7A01G030500 chr7A_12422105 chr7A 12422105 A T A T 3 downstream_gene_variant MODIFIER transcript non_Triplet 12399914 12422006 22093 3 0.0135789616620649 RFvsST 238043 177323617 177085575 no 11.2059425844926 TraesCS7A01G030500 chr7A_12414553 chr7A 12414553 A A G G 4 missense_variant MODERATE transcript non_Triplet 12399914 12422006 22093 3 0.0135789616620649 RFvsST 238043 177323617 177085575 no 11.2059425844926 TraesCS7A01G030500 chr7A_12407282 chr7A 12407282 T C T C 3 missense_variant MODERATE transcript non_Triplet 12399914 12422006 22093 3 0.0135789616620649 RFvsST 238043 177323617 177085575 no 11.2059425844926 TraesCS7A01G031100 chr7A_12909134 chr7A 12909134 G G T T 4 missense_variant MODERATE transcript non_Triplet 12908719 12911440 2722 1 0.0367376928728876 RFvsST 238043 177323617 177085575 no 65.7012094463516 TraesCS7A01G031400 chr7A_13102272 chr7A 13102272 C C G G 4 missense_variant MODERATE transcript non_Triplet 13100843 13106620 5778 4 0.0692281066112842 RFvsST 238043 177323617 177085575 no 274.971045899195 TraesCS7A01G031400 chr7A_13100987 chr7A 13100987 T T C C 4 synonymous_variant LOW transcript non_Triplet 13100843 13106620 5778 4 0.0692281066112842 RFvsST 238043 177323617 177085575 no 274.971045899195 TraesCS7A01G031400 chr7A_13104047 chr7A 13104047 T T A A 4 missense_variant MODERATE transcript non_Triplet 13100843 13106620 5778 4 0.0692281066112842 RFvsST 238043 177323617 177085575 no 274.971045899195 TraesCS7A01G031400 chr7A_13100772 chr7A 13100772 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 13100843 13106620 5778 4 0.0692281066112842 RFvsST 238043 177323617 177085575 no 274.971045899195 TraesCS7A01G031900 chr7A_13191776 chr7A 13191776 C C T T 4 synonymous_variant LOW transcript non_Triplet 13189196 13192575 3380 2 0.0591715976331361 RFvsST 238043 177323617 177085575 no 18.6238960743812 TraesCS7A01G031900 chr7A_13191731 chr7A 13191731 A A G G 4 synonymous_variant LOW transcript non_Triplet 13189196 13192575 3380 2 0.0591715976331361 RFvsST 238043 177323617 177085575 no 18.6238960743812 TraesCS7A01G032500 chr7A_13800357 chr7A 13800357 C C G G 4 missense_variant MODERATE transcript non_Triplet 13798052 13801643 3592 2 0.0556792873051225 RFvsST 238043 177323617 177085575 no 69.9823630708203 TraesCS7A01G032500 chr7A_13801623 chr7A 13801623 A A T T 4 missense_variant MODERATE transcript non_Triplet 13798052 13801643 3592 2 0.0556792873051225 RFvsST 238043 177323617 177085575 no 69.9823630708203 TraesCS7A01G033100 chr7A_14194405 chr7A 14194405 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 14189481 14194023 4543 1 0.0220118864186661 RFvsST 238043 177323617 177085575 no 213.729168368688 TraesCS7A01G033300 chr7A_14618338 chr7A 14618338 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 14618484 14619969 1486 2 0.134589502018843 RFvsST 238043 177323617 177085575 no 128.829045987628 TraesCS7A01G033300 chr7A_14618346 chr7A 14618346 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 14618484 14619969 1486 2 0.134589502018843 RFvsST 238043 177323617 177085575 no 128.829045987628 TraesCS7A01G033500 chr7A_14731403 chr7A 14731403 C T C T 3 synonymous_variant LOW transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14734884 chr7A 14734884 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14732826 chr7A 14732826 C T C T 3 missense_variant MODERATE transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14733000 chr7A 14733000 C A C A 3 missense_variant MODERATE transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14730528 chr7A 14730528 G T G T 3 missense_variant MODERATE transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14733986 chr7A 14733986 G G A A 4 synonymous_variant LOW transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033500 chr7A_14730602 chr7A 14730602 C T C T 3 synonymous_variant LOW transcript non_Triplet 14730462 14734786 4325 7 0.161849710982659 RFvsST 238043 177323617 177085575 no 739.58353032918 TraesCS7A01G033700 chr7A_14818640 chr7A 14818640 T T C C 4 synonymous_variant LOW transcript non_Triplet 14810821 14818844 8024 2 0.0249252243270189 RFvsST 238043 177323617 177085575 no 56.0615765332179 TraesCS7A01G033700 chr7A_14818867 chr7A 14818867 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 14810821 14818844 8024 2 0.0249252243270189 RFvsST 238043 177323617 177085575 no 56.0615765332179 TraesCS7A01G034300 chr7A_15006465 chr7A 15006465 G G A A 4 missense_variant MODERATE transcript non_Triplet 15005766 15006581 816 1 0.122549019607843 RFvsST 238043 177323617 177085575 no 172.868890536541 TraesCS7A01G036000 chr7A_16016365 chr7A 16016365 G G C C 4 synonymous_variant LOW transcript non_Triplet 16016350 16023391 7042 2 0.0284010224368077 RFvsST 238043 177323617 177085575 no 110.392836443683 TraesCS7A01G036000 chr7A_16016604 chr7A 16016604 C C T T 4 missense_variant MODERATE transcript non_Triplet 16016350 16023391 7042 2 0.0284010224368077 RFvsST 238043 177323617 177085575 no 110.392836443683 TraesCS7A01G036100 chr7A_16164192 chr7A 16164192 C C G G 4 missense_variant MODERATE transcript non_Triplet 16163796 16164708 913 2 0.219058050383352 RFvsST 238043 177323617 177085575 no 205.695286577784 TraesCS7A01G036100 chr7A_16164698 chr7A 16164698 T T G G 4 missense_variant MODERATE transcript non_Triplet 16163796 16164708 913 2 0.219058050383352 RFvsST 238043 177323617 177085575 no 205.695286577784 TraesCS7A01G039100 chr7A_17442817 chr7A 17442817 G C G C 3 missense_variant MODERATE transcript non_Triplet 17440955 17444397 3443 2 0.0580888759802498 RFvsST 238043 177323617 177085575 no 196.451960459395 TraesCS7A01G039100 chr7A_17443341 chr7A 17443341 G A G A 3 synonymous_variant LOW transcript non_Triplet 17440955 17444397 3443 2 0.0580888759802498 RFvsST 238043 177323617 177085575 no 196.451960459395 TraesCS7A01G039900 chr7A_18042751 chr7A 18042751 T T G G 4 missense_variant MODERATE transcript non_Triplet 18042154 18047472 5319 3 0.0564015792442188 RFvsST 238043 177323617 177085575 no 16.7700624174709 TraesCS7A01G039900 chr7A_18042730 chr7A 18042730 T T G G 4 missense_variant MODERATE transcript non_Triplet 18042154 18047472 5319 3 0.0564015792442188 RFvsST 238043 177323617 177085575 no 16.7700624174709 TraesCS7A01G039900 chr7A_18042726 chr7A 18042726 G A G A 3 missense_variant MODERATE transcript non_Triplet 18042154 18047472 5319 3 0.0564015792442188 RFvsST 238043 177323617 177085575 no 16.7700624174709 TraesCS7A01G040400 chr7A_18738544 chr7A 18738544 G G C C 4 missense_variant MODERATE transcript non_Triplet 18738412 18739728 1317 5 0.379650721336371 RFvsST 238043 177323617 177085575 no 126.609855681129 TraesCS7A01G040400 chr7A_18739577 chr7A 18739577 C C G G 4 missense_variant MODERATE transcript non_Triplet 18738412 18739728 1317 5 0.379650721336371 RFvsST 238043 177323617 177085575 no 126.609855681129 TraesCS7A01G040400 chr7A_18739602 chr7A 18739602 A G A G 3 synonymous_variant LOW transcript non_Triplet 18738412 18739728 1317 5 0.379650721336371 RFvsST 238043 177323617 177085575 no 126.609855681129 TraesCS7A01G040400 chr7A_18739737 chr7A 18739737 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 18738412 18739728 1317 5 0.379650721336371 RFvsST 238043 177323617 177085575 no 126.609855681129 TraesCS7A01G040400 chr7A_18739635 chr7A 18739635 C C T T 4 synonymous_variant LOW transcript non_Triplet 18738412 18739728 1317 5 0.379650721336371 RFvsST 238043 177323617 177085575 no 126.609855681129 TraesCS7A01G040600 chr7A_18876758 chr7A 18876758 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 18874137 18875189 1053 5 0.474833808167141 RFvsST 238043 177323617 177085575 no 34.1830380067224 TraesCS7A01G040600 chr7A_18876820 chr7A 18876820 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 18874137 18875189 1053 5 0.474833808167141 RFvsST 238043 177323617 177085575 no 34.1830380067224 TraesCS7A01G040600 chr7A_18876938 chr7A 18876938 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 18874137 18875189 1053 5 0.474833808167141 RFvsST 238043 177323617 177085575 no 34.1830380067224 TraesCS7A01G040600 chr7A_18876989 chr7A 18876989 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 18874137 18875189 1053 5 0.474833808167141 RFvsST 238043 177323617 177085575 no 34.1830380067224 TraesCS7A01G040600 chr7A_18876765 chr7A 18876765 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 18874137 18875189 1053 5 0.474833808167141 RFvsST 238043 177323617 177085575 no 34.1830380067224 TraesCS7A01G040700 chr7A_18880704 chr7A 18880704 T T C C 4 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18877138 chr7A 18877138 A A G G 4 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18878015 chr7A 18878015 G A G A 3 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18880511 chr7A 18880511 C C T T 4 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18878627 chr7A 18878627 A T A T 3 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18877036 chr7A 18877036 G G A A 4 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18883076 chr7A 18883076 G A G A 3 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G040700 chr7A_18882878 chr7A 18882878 A A G G 4 synonymous_variant LOW transcript non_Triplet 18877009 18883267 6259 8 0.127815945039144 RFvsST 238043 177323617 177085575 no 189.961066456729 TraesCS7A01G041100 chr7A_19083412 chr7A 19083412 C C G G 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19083049 chr7A 19083049 C C T T 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082686 chr7A 19082686 G G C C 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19083377 chr7A 19083377 G A G A 3 missense_variant MODERATE transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082980 chr7A 19082980 C C G G 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082942 chr7A 19082942 C C G G 4 missense_variant MODERATE transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19083247 chr7A 19083247 G G T T 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082728 chr7A 19082728 G G A A 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19083403 chr7A 19083403 G G C C 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19083330 chr7A 19083330 C A C A 3 missense_variant MODERATE transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082929 chr7A 19082929 G G C C 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041100 chr7A_19082710 chr7A 19082710 C C G G 4 synonymous_variant LOW transcript non_Triplet 19082654 19083553 900 12 1.33333333333333 RFvsST 238043 177323617 177085575 no 193.913506632627 TraesCS7A01G041500 chr7A_19254482 chr7A 19254482 A A G G 4 synonymous_variant LOW transcript non_Triplet 19253266 19259876 6611 1 0.0151263046437755 RFvsST 238043 177323617 177085575 no 14.9297283310334 TraesCS7A01G041600 chr7A_19318839 chr7A 19318839 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 19318964 19319337 374 1 0.267379679144385 RFvsST 238043 177323617 177085575 no 39.4621297856775 TraesCS7A01G042100 chr7A_19488252 chr7A 19488252 A A G G 4 missense_variant MODERATE transcript non_Triplet 19487366 19488586 1221 4 0.327600327600328 RFvsST 238043 177323617 177085575 no 56.0815797233729 TraesCS7A01G042100 chr7A_19488188 chr7A 19488188 C C A A 4 missense_variant MODERATE transcript non_Triplet 19487366 19488586 1221 4 0.327600327600328 RFvsST 238043 177323617 177085575 no 56.0815797233729 TraesCS7A01G042100 chr7A_19488315 chr7A 19488315 C C T T 4 missense_variant MODERATE transcript non_Triplet 19487366 19488586 1221 4 0.327600327600328 RFvsST 238043 177323617 177085575 no 56.0815797233729 TraesCS7A01G042100 chr7A_19487570 chr7A 19487570 C C T T 4 missense_variant MODERATE transcript non_Triplet 19487366 19488586 1221 4 0.327600327600328 RFvsST 238043 177323617 177085575 no 56.0815797233729 TraesCS7A01G042600 chr7A_19899888 chr7A 19899888 G A G A 3 synonymous_variant LOW transcript non_Triplet 19899279 19906407 7129 1 0.0140272127928181 RFvsST 238043 177323617 177085575 no 78.5700498035788 TraesCS7A01G042800 chr7A_19957416 chr7A 19957416 T T C C 4 synonymous_variant LOW transcript non_Triplet 19955864 19958742 2879 5 0.173671413685307 RFvsST 238043 177323617 177085575 no 161.213318738592 TraesCS7A01G042800 chr7A_19958636 chr7A 19958636 C T C T 3 missense_variant MODERATE transcript non_Triplet 19955864 19958742 2879 5 0.173671413685307 RFvsST 238043 177323617 177085575 no 161.213318738592 TraesCS7A01G042800 chr7A_19958823 chr7A 19958823 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 19955864 19958742 2879 5 0.173671413685307 RFvsST 238043 177323617 177085575 no 161.213318738592 TraesCS7A01G042800 chr7A_19958771 chr7A 19958771 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 19955864 19958742 2879 5 0.173671413685307 RFvsST 238043 177323617 177085575 no 161.213318738592 TraesCS7A01G042800 chr7A_19957464 chr7A 19957464 G A G A 3 synonymous_variant LOW transcript non_Triplet 19955864 19958742 2879 5 0.173671413685307 RFvsST 238043 177323617 177085575 no 161.213318738592 TraesCS7A01G042900 chr7A_19964122 chr7A 19964122 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 19959196 19960457 1262 1 0.0792393026941363 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G043000 chr7A_19964301 chr7A 19964301 A A C C 4 synonymous_variant LOW transcript non_Triplet 19964139 19965038 900 5 0.555555555555556 RFvsST 238043 177323617 177085575 no 32.1901007676212 TraesCS7A01G043000 chr7A_19969534 chr7A 19969534 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 19964139 19965038 900 5 0.555555555555556 RFvsST 238043 177323617 177085575 no 32.1901007676212 TraesCS7A01G043000 chr7A_19969336 chr7A 19969336 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 19964139 19965038 900 5 0.555555555555556 RFvsST 238043 177323617 177085575 no 32.1901007676212 TraesCS7A01G043000 chr7A_19969520 chr7A 19969520 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 19964139 19965038 900 5 0.555555555555556 RFvsST 238043 177323617 177085575 no 32.1901007676212 TraesCS7A01G043000 chr7A_19964783 chr7A 19964783 T T C C 4 synonymous_variant LOW transcript non_Triplet 19964139 19965038 900 5 0.555555555555556 RFvsST 238043 177323617 177085575 no 32.1901007676212 TraesCS7A01G043700 chr7A_20170976 chr7A 20170976 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20178154 chr7A 20178154 A A G G 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20171101 chr7A 20171101 C C G G 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20171458 chr7A 20171458 A A G G 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20181127 chr7A 20181127 G G T T 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20182242 chr7A 20182242 G G C C 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20182239 chr7A 20182239 T T C C 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20175735 chr7A 20175735 G G A A 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20171794 chr7A 20171794 C C T T 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20171191 chr7A 20171191 A A G G 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043700 chr7A_20171092 chr7A 20171092 T T C C 4 synonymous_variant LOW transcript non_Triplet 20170996 20182247 11252 11 0.0977603981514397 RFvsST 238043 177323617 177085575 no 858.955819345028 TraesCS7A01G043900 chr7A_20294045 chr7A 20294045 T T C C 4 missense_variant MODERATE transcript non_Triplet 20292793 20294550 1758 2 0.113765642775882 RFvsST 238043 177323617 177085575 no 12.3698511278147 TraesCS7A01G043900 chr7A_20292878 chr7A 20292878 T T C C 4 missense_variant MODERATE transcript non_Triplet 20292793 20294550 1758 2 0.113765642775882 RFvsST 238043 177323617 177085575 no 12.3698511278147 TraesCS7A01G044100 chr7A_20446130 chr7A 20446130 C C G G 4 synonymous_variant LOW transcript non_Triplet 20435891 20446437 10547 1 0.00948136910969944 RFvsST 238043 177323617 177085575 no 99.725413238691 TraesCS7A01G045800 chr7A_20726614 chr7A 20726614 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 20728249 20730774 2526 4 0.158353127474268 RFvsST 238043 177323617 177085575 no 1207.06785010266 TraesCS7A01G045800 chr7A_20726694 chr7A 20726694 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 20728249 20730774 2526 4 0.158353127474268 RFvsST 238043 177323617 177085575 no 1207.06785010266 TraesCS7A01G045800 chr7A_20726697 chr7A 20726697 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 20728249 20730774 2526 4 0.158353127474268 RFvsST 238043 177323617 177085575 no 1207.06785010266 TraesCS7A01G045800 chr7A_20726624 chr7A 20726624 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 20728249 20730774 2526 4 0.158353127474268 RFvsST 238043 177323617 177085575 no 1207.06785010266 TraesCS7A01G047000 chr7A_21263034 chr7A 21263034 C C T T 4 synonymous_variant LOW transcript non_Triplet 21263016 21266694 3679 3 0.0815438977983148 RFvsST 238043 177323617 177085575 no 18.5086823385241 TraesCS7A01G047000 chr7A_21266788 chr7A 21266788 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 21263016 21266694 3679 3 0.0815438977983148 RFvsST 238043 177323617 177085575 no 18.5086823385241 TraesCS7A01G047000 chr7A_21263058 chr7A 21263058 A A G G 4 synonymous_variant LOW transcript non_Triplet 21263016 21266694 3679 3 0.0815438977983148 RFvsST 238043 177323617 177085575 no 18.5086823385241 TraesCS7A01G047100 chr7A_21351610 chr7A 21351610 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 21351654 21353316 1663 1 0.0601322910402886 RFvsST 238043 177323617 177085575 no 59.030146245637 TraesCS7A01G048900 chr7A_22919923 chr7A 22919923 G G C C 4 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22919947 chr7A 22919947 T T C C 4 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22919560 chr7A 22919560 A G A G 3 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22918657 chr7A 22918657 C T C T 3 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22918639 chr7A 22918639 T C T C 3 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22919695 chr7A 22919695 G A G A 3 synonymous_variant LOW transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22918114 chr7A 22918114 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G048900 chr7A_22918150 chr7A 22918150 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 22917957 22921060 3104 8 0.257731958762887 RFvsST 238043 177323617 177085575 no 800.865960332441 TraesCS7A01G049000 chr7A_22936315 chr7A 22936315 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 22932369 22936039 3671 2 0.0544810678289294 RFvsST 238043 177323617 177085575 no 713.175502041839 TraesCS7A01G049000 chr7A_22937645 chr7A 22937645 T T G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 22932369 22936039 3671 2 0.0544810678289294 RFvsST 238043 177323617 177085575 no 713.175502041839 TraesCS7A01G049100 chr7A_22938270 chr7A 22938270 G A G A 3 synonymous_variant LOW transcript non_Triplet 22937762 22943978 6217 1 0.0160849284220685 RFvsST 238043 177323617 177085575 no 34.3868363343434 TraesCS7A01G049300 chr7A_22963618 chr7A 22963618 C C G G 4 synonymous_variant LOW transcript non_Triplet 22961980 22963857 1878 5 0.266240681576145 RFvsST 238043 177323617 177085575 no 91.4604064880548 TraesCS7A01G049300 chr7A_22963029 chr7A 22963029 C T C T 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 22961980 22963857 1878 5 0.266240681576145 RFvsST 238043 177323617 177085575 no 91.4604064880548 TraesCS7A01G049300 chr7A_22963609 chr7A 22963609 C C G G 4 synonymous_variant LOW transcript non_Triplet 22961980 22963857 1878 5 0.266240681576145 RFvsST 238043 177323617 177085575 no 91.4604064880548 TraesCS7A01G049300 chr7A_22963017 chr7A 22963017 T T A A 4 synonymous_variant LOW transcript non_Triplet 22961980 22963857 1878 5 0.266240681576145 RFvsST 238043 177323617 177085575 no 91.4604064880548 TraesCS7A01G049300 chr7A_22963480 chr7A 22963480 G G C C 4 synonymous_variant LOW transcript non_Triplet 22961980 22963857 1878 5 0.266240681576145 RFvsST 238043 177323617 177085575 no 91.4604064880548 TraesCS7A01G049400 chr7A_22981261 chr7A 22981261 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 22976133 22976922 790 1 0.126582278481013 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G049500 chr7A_22982602 chr7A 22982602 C C A A 4 missense_variant MODERATE transcript non_Triplet 22981352 22982647 1296 1 0.0771604938271605 RFvsST 238043 177323617 177085575 no 45.1866681441957 TraesCS7A01G050100 chr7A_23323505 chr7A 23323505 G G A A 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23327733 chr7A 23327733 A A G G 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23325923 chr7A 23325923 A A T T 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23327836 chr7A 23327836 A A G G 4 missense_variant MODERATE transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23327605 chr7A 23327605 C C T T 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23325176 chr7A 23325176 C C T T 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23323219 chr7A 23323219 G G A A 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23323333 chr7A 23323333 C C T T 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23327066 chr7A 23327066 A A G G,C 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23325077 chr7A 23325077 C C T T 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23320403 chr7A 23320403 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23325920 chr7A 23325920 T T C C 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23325086 chr7A 23325086 C C G G 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23323186 chr7A 23323186 G G A A 4 synonymous_variant LOW transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050100 chr7A_23320473 chr7A 23320473 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 23320529 23327841 7313 15 0.205114180226993 RFvsST 238043 177323617 177085575 no 61.5954570164732 TraesCS7A01G050200 chr7A_23331947 chr7A 23331947 A A G G 4 synonymous_variant LOW transcript non_Triplet 23328952 23332174 3223 5 0.155134967421657 RFvsST 238043 177323617 177085575 no 60.7983111752135 TraesCS7A01G050200 chr7A_23331418 chr7A 23331418 A A G G 4 synonymous_variant LOW transcript non_Triplet 23328952 23332174 3223 5 0.155134967421657 RFvsST 238043 177323617 177085575 no 60.7983111752135 TraesCS7A01G050200 chr7A_23331941 chr7A 23331941 T T G G 4 synonymous_variant LOW transcript non_Triplet 23328952 23332174 3223 5 0.155134967421657 RFvsST 238043 177323617 177085575 no 60.7983111752135 TraesCS7A01G050200 chr7A_23329090 chr7A 23329090 T T A A 4 synonymous_variant LOW transcript non_Triplet 23328952 23332174 3223 5 0.155134967421657 RFvsST 238043 177323617 177085575 no 60.7983111752135 TraesCS7A01G050200 chr7A_23328958 chr7A 23328958 C C T T 4 synonymous_variant LOW transcript non_Triplet 23328952 23332174 3223 5 0.155134967421657 RFvsST 238043 177323617 177085575 no 60.7983111752135 TraesCS7A01G051100 chr7A_24591606 chr7A 24591606 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 24592309 24593333 1025 2 0.195121951219512 RFvsST 238043 177323617 177085575 no 190.876103872865 TraesCS7A01G051100 chr7A_24592653 chr7A 24592653 A A C C 4 synonymous_variant LOW transcript non_Triplet 24592309 24593333 1025 2 0.195121951219512 RFvsST 238043 177323617 177085575 no 190.876103872865 TraesCS7A01G052000 chr7A_25114871 chr7A 25114871 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 25112137 25114815 2679 1 0.0373273609555804 RFvsST 238043 177323617 177085575 no 10.2562457211675 TraesCS7A01G053100 chr7A_25751272 chr7A 25751272 A T A T 3 synonymous_variant LOW transcript non_Triplet 25750666 25755551 4886 2 0.0409332787556283 RFvsST 238043 177323617 177085575 no 321.565600352387 TraesCS7A01G053100 chr7A_25755094 chr7A 25755094 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 25750666 25755551 4886 2 0.0409332787556283 RFvsST 238043 177323617 177085575 no 321.565600352387 TraesCS7A01G053900 chr7A_26049767 chr7A 26049767 G A G A 3 synonymous_variant LOW transcript non_Triplet 26049597 26049881 285 1 0.350877192982456 RFvsST 238043 177323617 177085575 no 31.8773119125514 TraesCS7A01G054700 chr7A_26418365 chr7A 26418365 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 26416647 26418526 1880 2 0.106382978723404 RFvsST 238043 177323617 177085575 no 146.625349719635 TraesCS7A01G054700 chr7A_26418276 chr7A 26418276 G A G A 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 26416647 26418526 1880 2 0.106382978723404 RFvsST 238043 177323617 177085575 no 146.625349719635 TraesCS7A01G054800 chr7A_26423790 chr7A 26423790 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 26420171 26422011 1841 1 0.0543183052688756 RFvsST 238043 177323617 177085575 no 14.2352629853012 TraesCS7A01G054900 chr7A_26424288 chr7A 26424288 G T G T 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26424142 chr7A 26424142 T C T C 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26424765 chr7A 26424765 G C G C 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26424065 chr7A 26424065 A G A G 3 synonymous_variant LOW transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26428770 chr7A 26428770 C T C T 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26427105 chr7A 26427105 T C T C 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26428531 chr7A 26428531 C G C G 3 missense_variant MODERATE transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G054900 chr7A_26424767 chr7A 26424767 C G C G 3 synonymous_variant LOW transcript non_Triplet 26423813 26429152 5340 8 0.149812734082397 RFvsST 238043 177323617 177085575 no 502.20908373639 TraesCS7A01G055400 chr7A_26768804 chr7A 26768804 C G C G 3 synonymous_variant LOW transcript non_Triplet 26768735 26769858 1124 1 0.0889679715302491 RFvsST 238043 177323617 177085575 no 32.9628706619905 TraesCS7A01G055700 chr7A_26790247 chr7A 26790247 A G A G 3 synonymous_variant LOW transcript non_Triplet 26789350 26791464 2115 1 0.0472813238770686 RFvsST 238043 177323617 177085575 no 70.3289749463779 TraesCS7A01G055800 chr7A_26822591 chr7A 26822591 A G A G 3 synonymous_variant LOW transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G055800 chr7A_26823558 chr7A 26823558 G A G A 3 synonymous_variant LOW transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G055800 chr7A_26822178 chr7A 26822178 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G055800 chr7A_26822335 chr7A 26822335 T C T C 3 missense_variant MODERATE transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G055800 chr7A_26822332 chr7A 26822332 G A G A 3 missense_variant MODERATE transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G055800 chr7A_26822276 chr7A 26822276 G C G C 3 synonymous_variant LOW transcript non_Triplet 26822270 26823950 1681 6 0.356930398572278 RFvsST 238043 177323617 177085575 no 506.567520649376 TraesCS7A01G056200 chr7A_27032775 chr7A 27032775 G A G A 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27032040 chr7A 27032040 T G T G 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27031358 chr7A 27031358 C T C T 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27032031 chr7A 27032031 C A C A 3 synonymous_variant LOW transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27032721 chr7A 27032721 G T G T 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27031478 chr7A 27031478 G C G C 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27031842 chr7A 27031842 C T C T 3 synonymous_variant LOW transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056200 chr7A_27031310 chr7A 27031310 C T C T 3 missense_variant MODERATE transcript non_Triplet 27031305 27032959 1655 8 0.483383685800604 RFvsST 238043 177323617 177085575 no 633.003801095808 TraesCS7A01G056500 chr7A_27203145 chr7A 27203145 T T G G 4 synonymous_variant LOW transcript non_Triplet 27202680 27203235 556 2 0.359712230215827 RFvsST 238043 177323617 177085575 no 25.0446015168355 TraesCS7A01G056500 chr7A_27203028 chr7A 27203028 G G A A 4 synonymous_variant LOW transcript non_Triplet 27202680 27203235 556 2 0.359712230215827 RFvsST 238043 177323617 177085575 no 25.0446015168355 TraesCS7A01G056600 chr7A_27282417 chr7A 27282417 G G A A 4 missense_variant MODERATE transcript non_Triplet 27279308 27282559 3252 1 0.030750307503075 RFvsST 238043 177323617 177085575 no 179.225959410285 TraesCS7A01G056700 chr7A_27290731 chr7A 27290731 C C T T 4 missense_variant&splice_region_variant MODERATE transcript non_Triplet 27288590 27291807 3218 5 0.155376009944065 RFvsST 238043 177323617 177085575 no 22.6553010929917 TraesCS7A01G056700 chr7A_27289070 chr7A 27289070 T T G G 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 27288590 27291807 3218 5 0.155376009944065 RFvsST 238043 177323617 177085575 no 22.6553010929917 TraesCS7A01G056700 chr7A_27290941 chr7A 27290941 G G A A 4 missense_variant MODERATE transcript non_Triplet 27288590 27291807 3218 5 0.155376009944065 RFvsST 238043 177323617 177085575 no 22.6553010929917 TraesCS7A01G056700 chr7A_27291604 chr7A 27291604 A A C C 4 synonymous_variant LOW transcript non_Triplet 27288590 27291807 3218 5 0.155376009944065 RFvsST 238043 177323617 177085575 no 22.6553010929917 TraesCS7A01G056700 chr7A_27288788 chr7A 27288788 T T C C 4 missense_variant MODERATE transcript non_Triplet 27288590 27291807 3218 5 0.155376009944065 RFvsST 238043 177323617 177085575 no 22.6553010929917 TraesCS7A01G056800 chr7A_27355589 chr7A 27355589 C C A A 4 missense_variant MODERATE transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27356351 chr7A 27356351 A A T T 4 missense_variant MODERATE transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27355387 chr7A 27355387 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27355939 chr7A 27355939 G G A A 4 synonymous_variant LOW transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27355437 chr7A 27355437 T T C C 4 missense_variant MODERATE transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27355930 chr7A 27355930 A A G G 4 synonymous_variant LOW transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056800 chr7A_27355599 chr7A 27355599 G G A A 4 missense_variant MODERATE transcript non_Triplet 27355393 27359467 4075 7 0.171779141104294 RFvsST 238043 177323617 177085575 no 50.9853082796919 TraesCS7A01G056900 chr7A_27389848 chr7A 27389848 C C T T 4 synonymous_variant LOW transcript non_Triplet 27389585 27402747 13163 1 0.00759705234369065 RFvsST 238043 177323617 177085575 no 13.2428637481501 TraesCS7A01G060200 chr7A_29652250 chr7A 29652250 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 29649465 29652513 3049 1 0.032797638570023 RFvsST 238043 177323617 177085575 no 23.650014267069 TraesCS7A01G063700 chr7A_31879983 chr7A 31879983 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 31874908 31879843 4936 4 0.0810372771474878 RFvsST 238043 177323617 177085575 no 223.756441089541 TraesCS7A01G063700 chr7A_31877483 chr7A 31877483 T T C C 4 synonymous_variant LOW transcript non_Triplet 31874908 31879843 4936 4 0.0810372771474878 RFvsST 238043 177323617 177085575 no 223.756441089541 TraesCS7A01G063700 chr7A_31879377 chr7A 31879377 G G A A 4 splice_acceptor_variant&intron_variant HIGH transcript non_Triplet 31874908 31879843 4936 4 0.0810372771474878 RFvsST 238043 177323617 177085575 no 223.756441089541 TraesCS7A01G063700 chr7A_31879084 chr7A 31879084 G G A A 4 synonymous_variant LOW transcript non_Triplet 31874908 31879843 4936 4 0.0810372771474878 RFvsST 238043 177323617 177085575 no 223.756441089541 TraesCS7A01G070900 chr7A_36625504 chr7A 36625504 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 36629131 36630219 1089 1 0.0918273645546373 RFvsST 238043 177323617 177085575 no 13.9235335427351 TraesCS7A01G071900 chr7A_37722364 chr7A 37722364 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G071900 chr7A_37720613 chr7A 37720613 C C G G 4 synonymous_variant LOW transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G071900 chr7A_37721054 chr7A 37721054 T T C C 4 synonymous_variant LOW transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G071900 chr7A_37720840 chr7A 37720840 C C T T 4 synonymous_variant LOW transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G071900 chr7A_37720553 chr7A 37720553 C T C T 3 synonymous_variant LOW transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G071900 chr7A_37720813 chr7A 37720813 G G A A 4 synonymous_variant LOW transcript non_Triplet 37719102 37722279 3178 6 0.188797986154814 RFvsST 238043 177323617 177085575 no 128.510789590221 TraesCS7A01G076400 chr7A_41797007 chr7A 41797007 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 41793672 41796896 3225 1 0.0310077519379845 RFvsST 238043 177323617 177085575 no 57.5921241202156 TraesCS7A01G077400 chr7A_42500549 chr7A 42500549 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 42497718 42499643 1926 1 0.0519210799584631 RFvsST 238043 177323617 177085575 no 197.54268194174 TraesCS7A01G080900 chr7A_46712676 chr7A 46712676 A A G G 4 missense_variant MODERATE transcript non_Triplet 46710472 46714015 3544 1 0.028216704288939 RFvsST 238043 177323617 177085575 no 49.8614515687868 TraesCS7A01G087300 chr7A_51378028 chr7A 51378028 G A G A 3 synonymous_variant LOW transcript non_Triplet 51375359 51381545 6187 1 0.0161629222563439 RFvsST 238043 177323617 177085575 no 48.4423722676024 TraesCS7A01G095700 chr7A_58843440 chr7A 58843440 C C T T 4 synonymous_variant LOW transcript non_Triplet 58842370 58843698 1329 1 0.0752445447705041 RFvsST 238043 177323617 177085575 no 71.4833628492987 TraesCS7A01G096800 chr7A_59406389 chr7A 59406389 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 59400857 59403780 2924 1 0.0341997264021888 RFvsST 238043 177323617 177085575 no 208.15876404461 TraesCS7A01G096900 chr7A_59406564 chr7A 59406564 T T C C 4 missense_variant MODERATE transcript non_Triplet 59406518 59410296 3779 1 0.0264620269912675 RFvsST 238043 177323617 177085575 no 37.818376803674 TraesCS7A01G099700 chr7A_60642309 chr7A 60642309 C C T T 4 intron_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G099700 chr7A_60641572 chr7A 60641572 T T A A 4 intron_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G099700 chr7A_60642607 chr7A 60642607 T T A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G099700 chr7A_60642268 chr7A 60642268 A A T T 4 intron_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G099700 chr7A_60642672 chr7A 60642672 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G099700 chr7A_60641541 chr7A 60641541 G G T T 4 intron_variant MODIFIER transcript non_Triplet 60641417 60642574 1158 6 0.518134715025907 RFvsST 238043 177323617 177085575 no 15.2685961601177 TraesCS7A01G100400 chr7A_61793170 chr7A 61793170 A A G G 4 missense_variant MODERATE transcript non_Triplet 61792464 61793297 834 1 0.119904076738609 RFvsST 238043 177323617 177085575 no 8.00771456300953 TraesCS7A01G100600 chr7A_61806014 chr7A 61806014 A A G G 4 synonymous_variant LOW transcript non_Triplet 61804914 61806572 1659 3 0.180831826401447 RFvsST 238043 177323617 177085575 no 205.761788570949 TraesCS7A01G100600 chr7A_61804946 chr7A 61804946 C C T T 4 missense_variant MODERATE transcript non_Triplet 61804914 61806572 1659 3 0.180831826401447 RFvsST 238043 177323617 177085575 no 205.761788570949 TraesCS7A01G100600 chr7A_61806107 chr7A 61806107 G G C C 4 synonymous_variant LOW transcript non_Triplet 61804914 61806572 1659 3 0.180831826401447 RFvsST 238043 177323617 177085575 no 205.761788570949 TraesCS7A01G101500 chr7A_62528949 chr7A 62528949 C C T T 4 missense_variant MODERATE transcript non_Triplet 62526407 62529660 3254 5 0.153657037492317 RFvsST 238043 177323617 177085575 no 33.0509318254351 TraesCS7A01G101500 chr7A_62529397 chr7A 62529397 C C G G 4 missense_variant MODERATE transcript non_Triplet 62526407 62529660 3254 5 0.153657037492317 RFvsST 238043 177323617 177085575 no 33.0509318254351 TraesCS7A01G101500 chr7A_62528356 chr7A 62528356 A A G G 4 missense_variant MODERATE transcript non_Triplet 62526407 62529660 3254 5 0.153657037492317 RFvsST 238043 177323617 177085575 no 33.0509318254351 TraesCS7A01G101500 chr7A_62528917 chr7A 62528917 A A G G 4 synonymous_variant LOW transcript non_Triplet 62526407 62529660 3254 5 0.153657037492317 RFvsST 238043 177323617 177085575 no 33.0509318254351 TraesCS7A01G101500 chr7A_62528294 chr7A 62528294 T T C C 4 missense_variant MODERATE transcript non_Triplet 62526407 62529660 3254 5 0.153657037492317 RFvsST 238043 177323617 177085575 no 33.0509318254351 TraesCS7A01G103100 chr7A_63310479 chr7A 63310479 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 63307614 63308288 675 1 0.148148148148148 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G103500 chr7A_63378640 chr7A 63378640 G C G C 3 missense_variant MODERATE transcript non_Triplet 63377919 63379202 1284 1 0.0778816199376947 RFvsST 238043 177323617 177085575 no 134.405457130824 TraesCS7A01G104000 chr7A_63443665 chr7A 63443665 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 63442442 63443176 735 1 0.136054421768707 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G104100 chr7A_63444036 chr7A 63444036 G G A A 4 missense_variant MODERATE transcript non_Triplet 63443677 63446292 2616 4 0.152905198776758 RFvsST 238043 177323617 177085575 no 138.321954272187 TraesCS7A01G104100 chr7A_63444163 chr7A 63444163 T T C C 4 missense_variant MODERATE transcript non_Triplet 63443677 63446292 2616 4 0.152905198776758 RFvsST 238043 177323617 177085575 no 138.321954272187 TraesCS7A01G104100 chr7A_63443821 chr7A 63443821 T T A A 4 missense_variant MODERATE transcript non_Triplet 63443677 63446292 2616 4 0.152905198776758 RFvsST 238043 177323617 177085575 no 138.321954272187 TraesCS7A01G104100 chr7A_63445903 chr7A 63445903 G G T T 4 missense_variant MODERATE transcript non_Triplet 63443677 63446292 2616 4 0.152905198776758 RFvsST 238043 177323617 177085575 no 138.321954272187 TraesCS7A01G104600 chr7A_63700253 chr7A 63700253 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 63700269 63700992 724 1 0.138121546961326 RFvsST 238043 177323617 177085575 no 22.6754603973776 TraesCS7A01G108400 chr7A_65973775 chr7A 65973775 G A G A 3 missense_variant MODERATE transcript unique_Triplet 65970082 65975601 5520 1 0.0181159420289855 RFvsST 238043 177323617 177085575 no 325.114407992141 TraesCS7A01G110700 chr7A_67988209 chr7A 67988209 C G C G 3 missense_variant MODERATE transcript non_Triplet 67984029 67989366 5338 1 0.0187336080929187 RFvsST 238043 177323617 177085575 no 351.479400134295 TraesCS7A01G111200 chr7A_68087454 chr7A 68087454 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 68075997 68086033 10037 1 0.00996313639533725 RFvsST 238043 177323617 177085575 no 152.2641704062 TraesCS7A01G111300 chr7A_68094155 chr7A 68094155 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 68087481 68094141 6661 3 0.0450382825401591 RFvsST 238043 177323617 177085575 no 141.032301060699 TraesCS7A01G111300 chr7A_68087529 chr7A 68087529 T C T C 3 synonymous_variant LOW transcript unique_Triplet 68087481 68094141 6661 3 0.0450382825401591 RFvsST 238043 177323617 177085575 no 141.032301060699 TraesCS7A01G111300 chr7A_68090085 chr7A 68090085 G A G A 3 synonymous_variant LOW transcript unique_Triplet 68087481 68094141 6661 3 0.0450382825401591 RFvsST 238043 177323617 177085575 no 141.032301060699 TraesCS7A01G111400 chr7A_68190810 chr7A 68190810 A G A G 3 synonymous_variant LOW transcript unique_Triplet 68188195 68190915 2721 3 0.110253583241455 RFvsST 238043 177323617 177085575 no 43.8713088099333 TraesCS7A01G111400 chr7A_68190960 chr7A 68190960 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 68188195 68190915 2721 3 0.110253583241455 RFvsST 238043 177323617 177085575 no 43.8713088099333 TraesCS7A01G111400 chr7A_68190793 chr7A 68190793 G A G A 3 missense_variant MODERATE transcript unique_Triplet 68188195 68190915 2721 3 0.110253583241455 RFvsST 238043 177323617 177085575 no 43.8713088099333 TraesCS7A01G117600 chr7A_76120377 chr7A 76120377 T C T C 3 synonymous_variant LOW transcript unique_Triplet 76118739 76121509 2771 1 0.0360880548538434 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G117700 chr7A_76118730 chr7A 76118730 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 76122497 76124279 1783 1 0.0560852495793606 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G118800 chr7A_76486817 chr7A 76486817 A G A G 3 synonymous_variant LOW transcript non_Triplet 76486457 76492884 6428 3 0.0466708151835719 RFvsST 238043 177323617 177085575 no 567.532177194176 TraesCS7A01G118800 chr7A_76490989 chr7A 76490989 A C A C 3 synonymous_variant LOW transcript non_Triplet 76486457 76492884 6428 3 0.0466708151835719 RFvsST 238043 177323617 177085575 no 567.532177194176 TraesCS7A01G118800 chr7A_76492620 chr7A 76492620 C A C A 3 missense_variant MODERATE transcript non_Triplet 76486457 76492884 6428 3 0.0466708151835719 RFvsST 238043 177323617 177085575 no 567.532177194176 TraesCS7A01G118900 chr7A_76503648 chr7A 76503648 C C A A 4 missense_variant MODERATE transcript non_Triplet 76498276 76504576 6301 1 0.0158704967465482 RFvsST 238043 177323617 177085575 no 591.849600900625 TraesCS7A01G119900 chr7A_77197799 chr7A 77197799 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 77194855 77195462 608 2 0.328947368421053 RFvsST 238043 177323617 177085575 no 33.7029935725438 TraesCS7A01G119900 chr7A_77197778 chr7A 77197778 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 77194855 77195462 608 2 0.328947368421053 RFvsST 238043 177323617 177085575 no 33.7029935725438 TraesCS7A01G120000 chr7A_77202841 chr7A 77202841 T T A A 4 missense_variant MODERATE transcript unique_Triplet 77197855 77204962 7108 1 0.0140686550365785 RFvsST 238043 177323617 177085575 no 47.4202377950061 TraesCS7A01G121800 chr7A_78505001 chr7A 78505001 C C G G 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 78504226 78507990 3765 3 0.0796812749003984 RFvsST 238043 177323617 177085575 no 10.8704594616622 TraesCS7A01G121800 chr7A_78507316 chr7A 78507316 T T C C 4 missense_variant MODERATE transcript unique_Triplet 78504226 78507990 3765 3 0.0796812749003984 RFvsST 238043 177323617 177085575 no 10.8704594616622 TraesCS7A01G121800 chr7A_78504212 chr7A 78504212 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 78504226 78507990 3765 3 0.0796812749003984 RFvsST 238043 177323617 177085575 no 10.8704594616622 TraesCS7A01G123800 chr7A_80019130 chr7A 80019130 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G123800 chr7A_80019192 chr7A 80019192 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G123800 chr7A_80019318 chr7A 80019318 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G123800 chr7A_80016570 chr7A 80016570 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G123800 chr7A_80019386 chr7A 80019386 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G123800 chr7A_80018489 chr7A 80018489 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 80014030 80014480 451 6 1.33037694013304 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G125600 chr7A_80852011 chr7A 80852011 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 80852171 80854376 2206 4 0.181323662737987 RFvsST 238043 177323617 177085575 no 287.096959904219 TraesCS7A01G125600 chr7A_80852204 chr7A 80852204 T T C C 4 synonymous_variant LOW transcript unique_Triplet 80852171 80854376 2206 4 0.181323662737987 RFvsST 238043 177323617 177085575 no 287.096959904219 TraesCS7A01G125600 chr7A_80852615 chr7A 80852615 A A G G 4 synonymous_variant LOW transcript unique_Triplet 80852171 80854376 2206 4 0.181323662737987 RFvsST 238043 177323617 177085575 no 287.096959904219 TraesCS7A01G125600 chr7A_80853572 chr7A 80853572 C C T T 4 synonymous_variant LOW transcript unique_Triplet 80852171 80854376 2206 4 0.181323662737987 RFvsST 238043 177323617 177085575 no 287.096959904219 TraesCS7A01G126400 chr7A_81136318 chr7A 81136318 G T G T 3 missense_variant MODERATE transcript unique_Triplet 81133544 81140404 6861 1 0.0145751348199971 RFvsST 238043 177323617 177085575 no 137.412110936214 TraesCS7A01G127000 chr7A_81639288 chr7A 81639288 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 81637656 81639125 1470 3 0.204081632653061 RFvsST 238043 177323617 177085575 no 16.9335790298241 TraesCS7A01G127000 chr7A_81639452 chr7A 81639452 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 81637656 81639125 1470 3 0.204081632653061 RFvsST 238043 177323617 177085575 no 16.9335790298241 TraesCS7A01G127000 chr7A_81639177 chr7A 81639177 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 81637656 81639125 1470 3 0.204081632653061 RFvsST 238043 177323617 177085575 no 16.9335790298241 TraesCS7A01G129300 chr7A_83285204 chr7A 83285204 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 83285296 83287739 2444 3 0.122749590834697 RFvsST 238043 177323617 177085575 no 204.085915963545 TraesCS7A01G129300 chr7A_83286879 chr7A 83286879 T T G G 4 synonymous_variant LOW transcript unique_Triplet 83285296 83287739 2444 3 0.122749590834697 RFvsST 238043 177323617 177085575 no 204.085915963545 TraesCS7A01G129300 chr7A_83287514 chr7A 83287514 G G A A 4 synonymous_variant LOW transcript unique_Triplet 83285296 83287739 2444 3 0.122749590834697 RFvsST 238043 177323617 177085575 no 204.085915963545 TraesCS7A01G129600 chr7A_83537291 chr7A 83537291 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 83531880 83533726 1847 1 0.0541418516513265 RFvsST 238043 177323617 177085575 no 29.299991037652 TraesCS7A01G129700 chr7A_83543184 chr7A 83543184 T T C C 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83542896 chr7A 83542896 C C A A 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83541992 chr7A 83541992 A A G G 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83545239 chr7A 83545239 A A G G 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83542752 chr7A 83542752 G G A A 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83543718 chr7A 83543718 C C T T 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83545472 chr7A 83545472 G G T T 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83542413 chr7A 83542413 G G A A 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83540066 chr7A 83540066 C C T T 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83541987 chr7A 83541987 A A G G 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83543424 chr7A 83543424 T T C C 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83545458 chr7A 83545458 A A T T 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83544492 chr7A 83544492 A A G G 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83539529 chr7A 83539529 A A G G 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129700 chr7A_83540604 chr7A 83540604 G G A A 4 synonymous_variant LOW transcript unique_Triplet 83537480 83546857 9378 15 0.159948816378759 RFvsST 238043 177323617 177085575 no 2015.20669276262 TraesCS7A01G129800 chr7A_83631494 chr7A 83631494 A A G G 4 missense_variant MODERATE transcript unique_Triplet 83622807 83631502 8696 2 0.0229990800367985 RFvsST 238043 177323617 177085575 no 52.7115171384868 TraesCS7A01G129800 chr7A_83631612 chr7A 83631612 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 83622807 83631502 8696 2 0.0229990800367985 RFvsST 238043 177323617 177085575 no 52.7115171384868 TraesCS7A01G130400 chr7A_83788920 chr7A 83788920 C C T T 4 missense_variant MODERATE transcript unique_Triplet 83781379 83789633 8255 3 0.0363416111447608 RFvsST 238043 177323617 177085575 no 43.695002580683 TraesCS7A01G130400 chr7A_83792862 chr7A 83792862 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 83781379 83789633 8255 3 0.0363416111447608 RFvsST 238043 177323617 177085575 no 43.695002580683 TraesCS7A01G130400 chr7A_83779013 chr7A 83779013 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 83781379 83789633 8255 3 0.0363416111447608 RFvsST 238043 177323617 177085575 no 43.695002580683 TraesCS7A01G130500 chr7A_83789802 chr7A 83789802 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 83792090 83792842 753 2 0.265604249667995 RFvsST 238043 177323617 177085575 no 230.229618211801 TraesCS7A01G130500 chr7A_83792242 chr7A 83792242 T T C C 4 synonymous_variant LOW transcript unique_Triplet 83792090 83792842 753 2 0.265604249667995 RFvsST 238043 177323617 177085575 no 230.229618211801 TraesCS7A01G130600 chr7A_83934014 chr7A 83934014 A A G G 4 missense_variant MODERATE transcript unique_Triplet 83932195 83936756 4562 1 0.0219202104340202 RFvsST 238043 177323617 177085575 no 26.0595986297962 TraesCS7A01G131000 chr7A_84693665 chr7A 84693665 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 84690365 84690931 567 1 0.17636684303351 RFvsST 238043 177323617 177085575 no 24.7157541428973 TraesCS7A01G131600 chr7A_85033399 chr7A 85033399 T G T G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 85030845 85033594 2750 2 0.0727272727272727 RFvsST 238043 177323617 177085575 no 663.708552906608 TraesCS7A01G131600 chr7A_85030960 chr7A 85030960 C T C T 3 synonymous_variant LOW transcript non_Triplet 85030845 85033594 2750 2 0.0727272727272727 RFvsST 238043 177323617 177085575 no 663.708552906608 TraesCS7A01G131700 chr7A_85074287 chr7A 85074287 C A C A 3 synonymous_variant LOW transcript unique_Triplet 85074056 85077614 3559 3 0.0842933408260747 RFvsST 238043 177323617 177085575 no 520.248224574309 TraesCS7A01G131700 chr7A_85074197 chr7A 85074197 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 85074056 85077614 3559 3 0.0842933408260747 RFvsST 238043 177323617 177085575 no 520.248224574309 TraesCS7A01G131700 chr7A_85074413 chr7A 85074413 T C T C 3 synonymous_variant LOW transcript unique_Triplet 85074056 85077614 3559 3 0.0842933408260747 RFvsST 238043 177323617 177085575 no 520.248224574309 TraesCS7A01G133000 chr7A_85417858 chr7A 85417858 G G A A 4 missense_variant MODERATE transcript unique_Triplet 85414920 85419738 4819 1 0.0207511931936086 RFvsST 238043 177323617 177085575 no 40.5934258450277 TraesCS7A01G133100 chr7A_85423461 chr7A 85423461 A A G G 4 missense_variant MODERATE transcript non_Triplet 85422100 85424048 1949 1 0.0513083632632119 RFvsST 238043 177323617 177085575 no 93.5586786179124 TraesCS7A01G138500 chr7A_90652757 chr7A 90652757 A A G G 4 synonymous_variant LOW transcript unique_Triplet 90651834 90652862 1029 3 0.291545189504373 RFvsST 238043 177323617 177085575 no 84.0868760374224 TraesCS7A01G138500 chr7A_90652238 chr7A 90652238 A A G G 4 synonymous_variant LOW transcript unique_Triplet 90651834 90652862 1029 3 0.291545189504373 RFvsST 238043 177323617 177085575 no 84.0868760374224 TraesCS7A01G138500 chr7A_90652538 chr7A 90652538 C C T T 4 synonymous_variant LOW transcript unique_Triplet 90651834 90652862 1029 3 0.291545189504373 RFvsST 238043 177323617 177085575 no 84.0868760374224 TraesCS7A01G138600 chr7A_90662924 chr7A 90662924 A A C C 4 synonymous_variant LOW transcript unique_Triplet 90659163 90663005 3843 4 0.104085349986989 RFvsST 238043 177323617 177085575 no 39.8195146932457 TraesCS7A01G138600 chr7A_90659685 chr7A 90659685 G G A A 4 synonymous_variant LOW transcript unique_Triplet 90659163 90663005 3843 4 0.104085349986989 RFvsST 238043 177323617 177085575 no 39.8195146932457 TraesCS7A01G138600 chr7A_90662893 chr7A 90662893 T T C C 4 missense_variant MODERATE transcript unique_Triplet 90659163 90663005 3843 4 0.104085349986989 RFvsST 238043 177323617 177085575 no 39.8195146932457 TraesCS7A01G138600 chr7A_90659718 chr7A 90659718 T T C C 4 synonymous_variant LOW transcript unique_Triplet 90659163 90663005 3843 4 0.104085349986989 RFvsST 238043 177323617 177085575 no 39.8195146932457 TraesCS7A01G139000 chr7A_91207216 chr7A 91207216 G G A A 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 91207156 91208958 1803 1 0.0554631170271769 RFvsST 238043 177323617 177085575 no 709.276459713125 TraesCS7A01G139800 chr7A_91510041 chr7A 91510041 T T C C 4 synonymous_variant LOW transcript unique_Triplet 91509435 91516361 6927 1 0.014436263894904 RFvsST 238043 177323617 177085575 no 7.68338220962832 TraesCS7A01G141300 chr7A_92890833 chr7A 92890833 A G A G 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92888471 chr7A 92888471 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92890516 chr7A 92890516 T C T C 3 synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92892096 chr7A 92892096 C T C T 3 synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92892087 chr7A 92892087 T C T C 3 synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92892399 chr7A 92892399 T C T C 3 synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92890582 chr7A 92890582 G C G C 3 synonymous_variant LOW transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92888453 chr7A 92888453 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92888462 chr7A 92888462 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141300 chr7A_92888474 chr7A 92888474 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 92888489 92892918 4430 10 0.225733634311512 RFvsST 238043 177323617 177085575 no 774.948011960205 TraesCS7A01G141500 chr7A_93034522 chr7A 93034522 C T C T 3 missense_variant MODERATE transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141500 chr7A_93034926 chr7A 93034926 G A G A 3 synonymous_variant LOW transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141500 chr7A_93036212 chr7A 93036212 T C T C 3 synonymous_variant LOW transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141500 chr7A_93034935 chr7A 93034935 A G A G 3 synonymous_variant LOW transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141500 chr7A_93034955 chr7A 93034955 C T C T 3 missense_variant MODERATE transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141500 chr7A_93034500 chr7A 93034500 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 93034506 93037278 2773 6 0.216372160115399 RFvsST 238043 177323617 177085575 no 217.378702288996 TraesCS7A01G141600 chr7A_93063992 chr7A 93063992 A C A C 3 missense_variant MODERATE transcript unique_Triplet 93057917 93064447 6531 3 0.0459347726228755 RFvsST 238043 177323617 177085575 no 31.1712916221134 TraesCS7A01G141600 chr7A_93061866 chr7A 93061866 G A G A 3 synonymous_variant LOW transcript unique_Triplet 93057917 93064447 6531 3 0.0459347726228755 RFvsST 238043 177323617 177085575 no 31.1712916221134 TraesCS7A01G141600 chr7A_93064213 chr7A 93064213 C A C A 3 missense_variant MODERATE transcript unique_Triplet 93057917 93064447 6531 3 0.0459347726228755 RFvsST 238043 177323617 177085575 no 31.1712916221134 TraesCS7A01G141800 chr7A_93075709 chr7A 93075709 T C T C 3 synonymous_variant LOW transcript non_Triplet 93072718 93076862 4145 2 0.0482509047044632 RFvsST 238043 177323617 177085575 no 271.33829154978 TraesCS7A01G141800 chr7A_93074784 chr7A 93074784 G A G A 3 missense_variant MODERATE transcript non_Triplet 93072718 93076862 4145 2 0.0482509047044632 RFvsST 238043 177323617 177085575 no 271.33829154978 TraesCS7A01G141900 chr7A_93076910 chr7A 93076910 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93081844 93082938 1095 3 0.273972602739726 RFvsST 238043 177323617 177085575 no 4.45177458955558 TraesCS7A01G141900 chr7A_93078259 chr7A 93078259 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93081844 93082938 1095 3 0.273972602739726 RFvsST 238043 177323617 177085575 no 4.45177458955558 TraesCS7A01G141900 chr7A_93077291 chr7A 93077291 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93081844 93082938 1095 3 0.273972602739726 RFvsST 238043 177323617 177085575 no 4.45177458955558 TraesCS7A01G143200 chr7A_94404265 chr7A 94404265 G G C C 4 missense_variant MODERATE transcript unique_Triplet 94401427 94404313 2887 2 0.0692760651195012 RFvsST 238043 177323617 177085575 no 123.034862736767 TraesCS7A01G143200 chr7A_94404291 chr7A 94404291 C C T T 4 missense_variant MODERATE transcript unique_Triplet 94401427 94404313 2887 2 0.0692760651195012 RFvsST 238043 177323617 177085575 no 123.034862736767 TraesCS7A01G144600 chr7A_95803563 chr7A 95803563 A A G G 4 synonymous_variant LOW transcript non_Triplet 95801526 95806767 5242 5 0.095383441434567 RFvsST 238043 177323617 177085575 no 307.642953503705 TraesCS7A01G144600 chr7A_95806063 chr7A 95806063 A A G G 4 missense_variant MODERATE transcript non_Triplet 95801526 95806767 5242 5 0.095383441434567 RFvsST 238043 177323617 177085575 no 307.642953503705 TraesCS7A01G144600 chr7A_95802116 chr7A 95802116 A A G G 4 synonymous_variant LOW transcript non_Triplet 95801526 95806767 5242 5 0.095383441434567 RFvsST 238043 177323617 177085575 no 307.642953503705 TraesCS7A01G144600 chr7A_95806614 chr7A 95806614 T T C C 4 synonymous_variant LOW transcript non_Triplet 95801526 95806767 5242 5 0.095383441434567 RFvsST 238043 177323617 177085575 no 307.642953503705 TraesCS7A01G144600 chr7A_95806620 chr7A 95806620 C C T T 4 synonymous_variant LOW transcript non_Triplet 95801526 95806767 5242 5 0.095383441434567 RFvsST 238043 177323617 177085575 no 307.642953503705 TraesCS7A01G147300 chr7A_100180932 chr7A 100180932 G G A A 4 synonymous_variant LOW transcript unique_Triplet 100180143 100182170 2028 1 0.0493096646942801 RFvsST 238043 177323617 177085575 no 121.220870754734 TraesCS7A01G152800 chr7A_106202708 chr7A 106202708 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 106199368 106202064 2697 1 0.0370782350760104 RFvsST 238043 177323617 177085575 no 63.1287427537819 TraesCS7A01G154900 chr7A_107869965 chr7A 107869965 G T G T 3 synonymous_variant LOW transcript unique_Triplet 107869069 107870118 1050 2 0.19047619047619 RFvsST 238043 177323617 177085575 no 92.1730172595203 TraesCS7A01G154900 chr7A_107870043 chr7A 107870043 C T C T 3 synonymous_variant LOW transcript unique_Triplet 107869069 107870118 1050 2 0.19047619047619 RFvsST 238043 177323617 177085575 no 92.1730172595203 TraesCS7A01G155800 chr7A_108762740 chr7A 108762740 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 108766251 108768905 2655 2 0.0753295668549906 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G155800 chr7A_108761601 chr7A 108761601 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 108766251 108768905 2655 2 0.0753295668549906 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G156000 chr7A_108816571 chr7A 108816571 T C T C 3 missense_variant MODERATE transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G156000 chr7A_108816578 chr7A 108816578 G A G A 3 synonymous_variant LOW transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G156000 chr7A_108816503 chr7A 108816503 T C T C 3 synonymous_variant LOW transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G156000 chr7A_108807857 chr7A 108807857 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G156000 chr7A_108815647 chr7A 108815647 A G A G 3 missense_variant MODERATE transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G156000 chr7A_108807762 chr7A 108807762 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 108810662 108816746 6085 6 0.0986031224322104 RFvsST 238043 177323617 177085575 no 363.38579304198 TraesCS7A01G157000 chr7A_109843475 chr7A 109843475 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 109840874 109843484 2611 1 0.0382995021064726 RFvsST 238043 177323617 177085575 no 346.340782400727 TraesCS7A01G157700 chr7A_110851790 chr7A 110851790 A G A G 3 missense_variant MODERATE transcript unique_Triplet 110851569 110854670 3102 3 0.0967117988394584 RFvsST 238043 177323617 177085575 no 313.760267323233 TraesCS7A01G157700 chr7A_110854329 chr7A 110854329 G C G C 3 missense_variant MODERATE transcript unique_Triplet 110851569 110854670 3102 3 0.0967117988394584 RFvsST 238043 177323617 177085575 no 313.760267323233 TraesCS7A01G157700 chr7A_110854418 chr7A 110854418 T C T C 3 missense_variant MODERATE transcript unique_Triplet 110851569 110854670 3102 3 0.0967117988394584 RFvsST 238043 177323617 177085575 no 313.760267323233 TraesCS7A01G158200 chr7A_112977724 chr7A 112977724 G G T T 4 missense_variant MODERATE transcript unique_Triplet 112975162 112978000 2839 1 0.0352236703064459 RFvsST 238043 177323617 177085575 no 20.2300947217807 TraesCS7A01G158300 chr7A_113371576 chr7A 113371576 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 113370937 113371639 703 2 0.284495021337127 RFvsST 238043 177323617 177085575 no 378.778385823504 TraesCS7A01G158300 chr7A_113370958 chr7A 113370958 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 113370937 113371639 703 2 0.284495021337127 RFvsST 238043 177323617 177085575 no 378.778385823504 TraesCS7A01G158600 chr7A_114021058 chr7A 114021058 G A G A 3 synonymous_variant LOW transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114021196 chr7A 114021196 C T C T 3 synonymous_variant LOW transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114021249 chr7A 114021249 C C T T 4 missense_variant MODERATE transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114020412 chr7A 114020412 G A G A 3 missense_variant MODERATE transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114021493 chr7A 114021493 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114020785 chr7A 114020785 G G A A 4 missense_variant MODERATE transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114020434 chr7A 114020434 T C T C 3 synonymous_variant LOW transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114021244 chr7A 114021244 C C T T 4 synonymous_variant LOW transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G158600 chr7A_114021130 chr7A 114021130 C A C A 3 synonymous_variant LOW transcript unique_Triplet 114020033 114021298 1266 9 0.710900473933649 RFvsST 238043 177323617 177085575 no 235.687873720476 TraesCS7A01G159300 chr7A_115807090 chr7A 115807090 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 115803377 115806953 3577 2 0.0559127760693318 RFvsST 238043 177323617 177085575 no 9.51001382587316 TraesCS7A01G159300 chr7A_115803248 chr7A 115803248 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 115803377 115806953 3577 2 0.0559127760693318 RFvsST 238043 177323617 177085575 no 9.51001382587316 TraesCS7A01G159700 chr7A_116005553 chr7A 116005553 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 116005223 116007510 2288 3 0.131118881118881 RFvsST 238043 177323617 177085575 no 119.086911577133 TraesCS7A01G159700 chr7A_116007457 chr7A 116007457 A A C C 4 missense_variant MODERATE transcript unique_Triplet 116005223 116007510 2288 3 0.131118881118881 RFvsST 238043 177323617 177085575 no 119.086911577133 TraesCS7A01G159700 chr7A_116007622 chr7A 116007622 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 116005223 116007510 2288 3 0.131118881118881 RFvsST 238043 177323617 177085575 no 119.086911577133 TraesCS7A01G160100 chr7A_116122402 chr7A 116122402 T T A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 116117278 116122899 5622 3 0.0533617929562433 RFvsST 238043 177323617 177085575 no 88.8464915210535 TraesCS7A01G160100 chr7A_116113239 chr7A 116113239 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 116117278 116122899 5622 3 0.0533617929562433 RFvsST 238043 177323617 177085575 no 88.8464915210535 TraesCS7A01G160100 chr7A_116122401 chr7A 116122401 G G T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 116117278 116122899 5622 3 0.0533617929562433 RFvsST 238043 177323617 177085575 no 88.8464915210535 TraesCS7A01G160200 chr7A_116124483 chr7A 116124483 T T A A 4 missense_variant MODERATE transcript unique_Triplet 116124181 116124807 627 1 0.159489633173844 RFvsST 238043 177323617 177085575 no 55.9936954847784 TraesCS7A01G163500 chr7A_119800923 chr7A 119800923 G G A A 4 missense_variant MODERATE transcript unique_Triplet 119800887 119813865 12979 1 0.00770475383311503 RFvsST 238043 177323617 177085575 no No_match TraesCS7A01G172900 chr7A_127601935 chr7A 127601935 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 127594917 127601813 6897 2 0.028998115122517 RFvsST 238043 177323617 177085575 no 40.0218231421261 TraesCS7A01G172900 chr7A_127594927 chr7A 127594927 C G C G 3 missense_variant MODERATE transcript unique_Triplet 127594917 127601813 6897 2 0.028998115122517 RFvsST 238043 177323617 177085575 no 40.0218231421261 TraesCS7A01G218500 chr7A_185637708 chr7A 185637708 C C T T 4 missense_variant MODERATE transcript unique_Triplet 185635646 185642308 6663 1 0.015008254539997 RFvsST 130090446 736689010 606598565 no 196.967799083922 TraesCS7A01G222600 chr7A_191838540 chr7A 191838540 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 191833589 191835949 2361 1 0.0423549343498518 RFvsST 130090446 736689010 606598565 no 216.08205351794 TraesCS7A01G224500 chr7A_194050981 chr7A 194050981 G A G A 3 missense_variant MODERATE transcript unique_Triplet 194050504 194053322 2819 1 0.0354735721887194 RFvsST 130090446 736689010 606598565 no 156.695215319482 TraesCS7A01G230100 chr7A_200610298 chr7A 200610298 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 200599649 200608278 8630 1 0.0115874855156431 RFvsST 130090446 736689010 606598565 no 5.46804071150334 TraesCS7A01G231000 chr7A_201543488 chr7A 201543488 G G A A 4 stop_gained HIGH transcript unique_Triplet 201543483 201546862 3380 1 0.029585798816568 RFvsST 130090446 736689010 606598565 no 16.7040686305502 TraesCS7A01G234200 chr7A_206571390 chr7A 206571390 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 206574456 206575614 1159 1 0.0862812769628991 RFvsST 130090446 736689010 606598565 no 397.749194256312 TraesCS7A01G235500 chr7A_207546619 chr7A 207546619 G A G A 3 synonymous_variant LOW transcript non_Triplet 207546573 207548701 2129 1 0.0469704086425552 RFvsST 130090446 736689010 606598565 no 225.51558755873 TraesCS7A01G246200 chr7A_225059876 chr7A 225059876 A A G G 4 missense_variant MODERATE transcript unique_Triplet 225055337 225060057 4721 1 0.0211819529760644 RFvsST 130090446 736689010 606598565 no 72.3199572263945 TraesCS7A01G246300 chr7A_225356549 chr7A 225356549 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 225355256 225357854 2599 4 0.15390534821085 RFvsST 130090446 736689010 606598565 no 333.411132487159 TraesCS7A01G246300 chr7A_225357078 chr7A 225357078 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 225355256 225357854 2599 4 0.15390534821085 RFvsST 130090446 736689010 606598565 no 333.411132487159 TraesCS7A01G246300 chr7A_225357068 chr7A 225357068 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 225355256 225357854 2599 4 0.15390534821085 RFvsST 130090446 736689010 606598565 no 333.411132487159 TraesCS7A01G246300 chr7A_225355550 chr7A 225355550 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 225355256 225357854 2599 4 0.15390534821085 RFvsST 130090446 736689010 606598565 no 333.411132487159 TraesCS7A01G246400 chr7A_225615986 chr7A 225615986 C T C T 3 synonymous_variant LOW transcript unique_Triplet 225615753 225617806 2054 2 0.0973709834469328 RFvsST 130090446 736689010 606598565 no 46.5879222373124 TraesCS7A01G246400 chr7A_225615977 chr7A 225615977 C T C T 3 synonymous_variant LOW transcript unique_Triplet 225615753 225617806 2054 2 0.0973709834469328 RFvsST 130090446 736689010 606598565 no 46.5879222373124 TraesCS7A01G247000 chr7A_227083470 chr7A 227083470 C T C T 3 missense_variant MODERATE transcript non_Triplet 227082796 227083891 1096 2 0.182481751824818 RFvsST 130090446 736689010 606598565 no 178.413204488893 TraesCS7A01G247000 chr7A_227083314 chr7A 227083314 C T C T 3 synonymous_variant LOW transcript non_Triplet 227082796 227083891 1096 2 0.182481751824818 RFvsST 130090446 736689010 606598565 no 178.413204488893 TraesCS7A01G247700 chr7A_228489300 chr7A 228489300 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 228489379 228490268 890 1 0.112359550561798 RFvsST 130090446 736689010 606598565 no 279.164088166391 TraesCS7A01G247900 chr7A_229028366 chr7A 229028366 C A C A 3 missense_variant MODERATE transcript unique_Triplet 229026704 229028914 2211 1 0.0452284034373587 RFvsST 130090446 736689010 606598565 no 62.0875394754387 TraesCS7A01G248200 chr7A_229201043 chr7A 229201043 G G A A 4 synonymous_variant LOW transcript unique_Triplet 229200971 229204572 3602 2 0.0555247084952804 RFvsST 130090446 736689010 606598565 no 365.57479221549 TraesCS7A01G248200 chr7A_229200927 chr7A 229200927 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 229200971 229204572 3602 2 0.0555247084952804 RFvsST 130090446 736689010 606598565 no 365.57479221549 TraesCS7A01G249100 chr7A_231547795 chr7A 231547795 C G C G 3 synonymous_variant LOW transcript unique_Triplet 231541567 231548824 7258 4 0.0551116009920088 RFvsST 130090446 736689010 606598565 no 346.023093193863 TraesCS7A01G249100 chr7A_231549139 chr7A 231549139 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 231541567 231548824 7258 4 0.0551116009920088 RFvsST 130090446 736689010 606598565 no 346.023093193863 TraesCS7A01G249100 chr7A_231547486 chr7A 231547486 G G C C 4 synonymous_variant LOW transcript unique_Triplet 231541567 231548824 7258 4 0.0551116009920088 RFvsST 130090446 736689010 606598565 no 346.023093193863 TraesCS7A01G249100 chr7A_231546880 chr7A 231546880 C T C T 3 synonymous_variant LOW transcript unique_Triplet 231541567 231548824 7258 4 0.0551116009920088 RFvsST 130090446 736689010 606598565 no 346.023093193863 TraesCS7A01G250200 chr7A_232594714 chr7A 232594714 T C T C 3 missense_variant MODERATE transcript unique_Triplet 232594490 232597664 3175 2 0.062992125984252 RFvsST 130090446 736689010 606598565 no 134.325818768959 TraesCS7A01G250200 chr7A_232596786 chr7A 232596786 T C T C 3 synonymous_variant LOW transcript unique_Triplet 232594490 232597664 3175 2 0.062992125984252 RFvsST 130090446 736689010 606598565 no 134.325818768959 TraesCS7A01G250300 chr7A_232624119 chr7A 232624119 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 232624268 232628619 4352 2 0.0459558823529412 RFvsST 130090446 736689010 606598565 no 8.72101217797015 TraesCS7A01G250300 chr7A_232626142 chr7A 232626142 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 232624268 232628619 4352 2 0.0459558823529412 RFvsST 130090446 736689010 606598565 no 8.72101217797015 TraesCS7A01G250400 chr7A_232742559 chr7A 232742559 G T G T 3 missense_variant MODERATE transcript nonUnique_Triplet 232742244 232743701 1458 1 0.0685871056241426 RFvsST 130090446 736689010 606598565 no 94.5106537865789 TraesCS7A01G250600 chr7A_232747991 chr7A 232747991 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 232748847 232750475 1629 2 0.122774708410068 RFvsST 130090446 736689010 606598565 no 217.698660588638 TraesCS7A01G250600 chr7A_232749233 chr7A 232749233 G G A A 4 synonymous_variant LOW transcript unique_Triplet 232748847 232750475 1629 2 0.122774708410068 RFvsST 130090446 736689010 606598565 no 217.698660588638 TraesCS7A01G250700 chr7A_232758330 chr7A 232758330 G A G A 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232757145 chr7A 232757145 G A G A 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232751332 chr7A 232751332 T C T C 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232757161 chr7A 232757161 T G T G 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232751638 chr7A 232751638 A G A G 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232757330 chr7A 232757330 C A C A 3 synonymous_variant LOW transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232751599 chr7A 232751599 T C T C 3 missense_variant MODERATE transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G250700 chr7A_232757583 chr7A 232757583 T C T C 3 synonymous_variant LOW transcript unique_Triplet 232751162 232758513 7352 8 0.108813928182807 RFvsST 130090446 736689010 606598565 no 428.891537234067 TraesCS7A01G251000 chr7A_233336447 chr7A 233336447 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 233335156 233340134 4979 2 0.0401687085760193 RFvsST 130090446 736689010 606598565 no 39.2094554686657 TraesCS7A01G251000 chr7A_233339743 chr7A 233339743 T C T C 3 synonymous_variant LOW transcript unique_Triplet 233335156 233340134 4979 2 0.0401687085760193 RFvsST 130090446 736689010 606598565 no 39.2094554686657 TraesCS7A01G251100 chr7A_234352344 chr7A 234352344 A C A C 3 missense_variant MODERATE transcript unique_Triplet 234351966 234353487 1522 1 0.0657030223390276 RFvsST 130090446 736689010 606598565 no 114.960922875364 TraesCS7A01G251400 chr7A_235467961 chr7A 235467961 G A G A 3 missense_variant MODERATE transcript unique_Triplet 235460722 235468215 7494 1 0.0133440085401655 RFvsST 130090446 736689010 606598565 no 32.3987757689795 TraesCS7A01G252100 chr7A_236620390 chr7A 236620390 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 236621958 236623406 1449 1 0.0690131124913734 RFvsST 130090446 736689010 606598565 no 17.9884680453075 TraesCS7A01G252900 chr7A_237949844 chr7A 237949844 G A G A 3 synonymous_variant LOW transcript unique_Triplet 237949456 237956714 7259 1 0.0137760022041604 RFvsST 130090446 736689010 606598565 no 56.6144941078265 TraesCS7A01G253000 chr7A_238826240 chr7A 238826240 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 238823721 238829218 5498 1 0.0181884321571481 RFvsST 130090446 736689010 606598565 no 112.488185473089 TraesCS7A01G255000 chr7A_242059408 chr7A 242059408 G A G A 3 synonymous_variant LOW transcript unique_Triplet 242057310 242060136 2827 1 0.0353731871241599 RFvsST 130090446 736689010 606598565 no 55.6414011953599 TraesCS7A01G255100 chr7A_242620529 chr7A 242620529 C T C T 3 missense_variant MODERATE transcript non_Triplet 242620341 242620652 312 1 0.32051282051282 RFvsST 130090446 736689010 606598565 no 60.9062210052823 TraesCS7A01G255900 chr7A_244469724 chr7A 244469724 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244469885 chr7A 244469885 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244471082 chr7A 244471082 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244470445 chr7A 244470445 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244470186 chr7A 244470186 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244469945 chr7A 244469945 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G255900 chr7A_244470923 chr7A 244470923 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 244472388 244473396 1009 7 0.693756194251734 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G258700 chr7A_250217825 chr7A 250217825 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 250214998 250217806 2809 1 0.0355998576005696 RFvsST 130090446 736689010 606598565 no 146.470529757244 TraesCS7A01G263100 chr7A_260031856 chr7A 260031856 G G T T 4 intron_variant MODIFIER transcript nonUnique_Triplet 260030186 260033658 3473 1 0.0287935502447452 RFvsST 130090446 736689010 606598565 no 1311.60577592947 TraesCS7A01G264500 chr7A_263733277 chr7A 263733277 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 263731159 263733027 1869 2 0.107009095773141 RFvsST 130090446 736689010 606598565 no 2648.68403484376 TraesCS7A01G264500 chr7A_263730561 chr7A 263730561 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 263731159 263733027 1869 2 0.107009095773141 RFvsST 130090446 736689010 606598565 no 2648.68403484376 TraesCS7A01G264700 chr7A_264174398 chr7A 264174398 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 264172286 264174097 1812 2 0.11037527593819 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G264700 chr7A_264173619 chr7A 264173619 G G A A 4 missense_variant MODERATE transcript non_Triplet 264172286 264174097 1812 2 0.11037527593819 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G264900 chr7A_264847399 chr7A 264847399 A G A G 3 intron_variant MODIFIER transcript unique_Triplet 264845944 264849274 3331 4 0.120084058841189 RFvsST 130090446 736689010 606598565 no 134.408847352138 TraesCS7A01G264900 chr7A_264850853 chr7A 264850853 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 264845944 264849274 3331 4 0.120084058841189 RFvsST 130090446 736689010 606598565 no 134.408847352138 TraesCS7A01G264900 chr7A_264848117 chr7A 264848117 T C T C 3 synonymous_variant LOW transcript unique_Triplet 264845944 264849274 3331 4 0.120084058841189 RFvsST 130090446 736689010 606598565 no 134.408847352138 TraesCS7A01G264900 chr7A_264845849 chr7A 264845849 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 264845944 264849274 3331 4 0.120084058841189 RFvsST 130090446 736689010 606598565 no 134.408847352138 TraesCS7A01G265300 chr7A_265926753 chr7A 265926753 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 265926755 265927832 1078 2 0.185528756957328 RFvsST 130090446 736689010 606598565 no 419.836835379034 TraesCS7A01G265300 chr7A_265928012 chr7A 265928012 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 265926755 265927832 1078 2 0.185528756957328 RFvsST 130090446 736689010 606598565 no 419.836835379034 TraesCS7A01G265500 chr7A_266591466 chr7A 266591466 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 266589602 266590204 603 2 0.33167495854063 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G265500 chr7A_266591622 chr7A 266591622 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 266589602 266590204 603 2 0.33167495854063 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G265600 chr7A_266977091 chr7A 266977091 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 266975434 266976874 1441 1 0.0693962526023595 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G265700 chr7A_266981059 chr7A 266981059 G G C C 4 missense_variant MODERATE transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265700 chr7A_266977569 chr7A 266977569 C A C A 3 missense_variant MODERATE transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265700 chr7A_266977203 chr7A 266977203 G G A A 4 synonymous_variant LOW transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265700 chr7A_266977595 chr7A 266977595 C C A A 4 missense_variant MODERATE transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265700 chr7A_266977592 chr7A 266977592 T T A A 4 missense_variant MODERATE transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265700 chr7A_266977263 chr7A 266977263 C C T T 4 synonymous_variant LOW transcript unique_Triplet 266977182 266981214 4033 6 0.148772625836846 RFvsST 130090446 736689010 606598565 no 123.228217554728 TraesCS7A01G265800 chr7A_267431269 chr7A 267431269 C C T T 4 missense_variant MODERATE transcript unique_Triplet 267430011 267434015 4005 3 0.0749063670411985 RFvsST 130090446 736689010 606598565 no 873.189866491395 TraesCS7A01G265800 chr7A_267432111 chr7A 267432111 G G C C 4 missense_variant MODERATE transcript unique_Triplet 267430011 267434015 4005 3 0.0749063670411985 RFvsST 130090446 736689010 606598565 no 873.189866491395 TraesCS7A01G265800 chr7A_267430495 chr7A 267430495 C C G G 4 missense_variant MODERATE transcript unique_Triplet 267430011 267434015 4005 3 0.0749063670411985 RFvsST 130090446 736689010 606598565 no 873.189866491395 TraesCS7A01G266000 chr7A_267570228 chr7A 267570228 G G C C 4 missense_variant MODERATE transcript unique_Triplet 267569303 267570629 1327 3 0.226073850791258 RFvsST 130090446 736689010 606598565 no 95.5599328958996 TraesCS7A01G266000 chr7A_267569342 chr7A 267569342 G A G A 3 synonymous_variant LOW transcript unique_Triplet 267569303 267570629 1327 3 0.226073850791258 RFvsST 130090446 736689010 606598565 no 95.5599328958996 TraesCS7A01G266000 chr7A_267569474 chr7A 267569474 G G A A 4 synonymous_variant LOW transcript unique_Triplet 267569303 267570629 1327 3 0.226073850791258 RFvsST 130090446 736689010 606598565 no 95.5599328958996 TraesCS7A01G266500 chr7A_268867879 chr7A 268867879 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 268866133 268867822 1690 1 0.0591715976331361 RFvsST 130090446 736689010 606598565 no 162.879319529666 TraesCS7A01G267200 chr7A_270273750 chr7A 270273750 T T A A 4 missense_variant MODERATE transcript nonUnique_Triplet 270273193 270280609 7417 1 0.0134825401105568 RFvsST 130090446 736689010 606598565 no 210.672870090787 TraesCS7A01G267300 chr7A_270754214 chr7A 270754214 C C G G 4 missense_variant MODERATE transcript unique_Triplet 270752639 270756115 3477 1 0.0287604256542997 RFvsST 130090446 736689010 606598565 no 106.22664004313 TraesCS7A01G267600 chr7A_270893572 chr7A 270893572 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270892426 chr7A 270892426 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270894071 chr7A 270894071 A A C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270890616 chr7A 270890616 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270895079 chr7A 270895079 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270893501 chr7A 270893501 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270893955 chr7A 270893955 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270892694 chr7A 270892694 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270893406 chr7A 270893406 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270894986 chr7A 270894986 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270889203 chr7A 270889203 G G A A 4 synonymous_variant LOW transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270895273 chr7A 270895273 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267600 chr7A_270892267 chr7A 270892267 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 270882710 270890312 7603 13 0.170985137445745 RFvsST 130090446 736689010 606598565 no 171.591663264734 TraesCS7A01G267800 chr7A_271379145 chr7A 271379145 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 271375803 271379209 3407 1 0.0293513354857646 RFvsST 130090446 736689010 606598565 no 15.2115448355383 TraesCS7A01G268600 chr7A_271818451 chr7A 271818451 A A C C 4 missense_variant MODERATE transcript unique_Triplet 271816410 271822944 6535 3 0.0459066564651875 RFvsST 130090446 736689010 606598565 no 463.799616385518 TraesCS7A01G268600 chr7A_271816472 chr7A 271816472 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 271816410 271822944 6535 3 0.0459066564651875 RFvsST 130090446 736689010 606598565 no 463.799616385518 TraesCS7A01G268600 chr7A_271818666 chr7A 271818666 G G A A 4 synonymous_variant LOW transcript unique_Triplet 271816410 271822944 6535 3 0.0459066564651875 RFvsST 130090446 736689010 606598565 no 463.799616385518 TraesCS7A01G268900 chr7A_273002518 chr7A 273002518 G G C C 4 missense_variant MODERATE transcript unique_Triplet 272995886 273008007 12122 3 0.024748391354562 RFvsST 130090446 736689010 606598565 no 152.993074283508 TraesCS7A01G268900 chr7A_272999641 chr7A 272999641 G G C C 4 synonymous_variant LOW transcript unique_Triplet 272995886 273008007 12122 3 0.024748391354562 RFvsST 130090446 736689010 606598565 no 152.993074283508 TraesCS7A01G268900 chr7A_273002992 chr7A 273002992 C C T T 4 missense_variant MODERATE transcript unique_Triplet 272995886 273008007 12122 3 0.024748391354562 RFvsST 130090446 736689010 606598565 no 152.993074283508 TraesCS7A01G269200 chr7A_273515862 chr7A 273515862 C C A A 4 missense_variant MODERATE transcript unique_Triplet 273513806 273516084 2279 3 0.131636682755595 RFvsST 130090446 736689010 606598565 no 617.824358711767 TraesCS7A01G269200 chr7A_273514015 chr7A 273514015 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 273513806 273516084 2279 3 0.131636682755595 RFvsST 130090446 736689010 606598565 no 617.824358711767 TraesCS7A01G269200 chr7A_273515065 chr7A 273515065 C C G G 4 synonymous_variant LOW transcript unique_Triplet 273513806 273516084 2279 3 0.131636682755595 RFvsST 130090446 736689010 606598565 no 617.824358711767 TraesCS7A01G269400 chr7A_274323053 chr7A 274323053 G T G T 3 missense_variant MODERATE transcript unique_Triplet 274322851 274325069 2219 1 0.0450653447498873 RFvsST 130090446 736689010 606598565 no 252.067557780474 TraesCS7A01G269700 chr7A_275917327 chr7A 275917327 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 275916291 275916705 415 1 0.240963855421687 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G269800 chr7A_275920747 chr7A 275920747 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 275917440 275922296 4857 2 0.0411776816965205 RFvsST 130090446 736689010 606598565 no 204.742259161657 TraesCS7A01G269800 chr7A_275919849 chr7A 275919849 T T G G 4 missense_variant&splice_region_variant MODERATE transcript nonUnique_Triplet 275917440 275922296 4857 2 0.0411776816965205 RFvsST 130090446 736689010 606598565 no 204.742259161657 TraesCS7A01G270200 chr7A_277447868 chr7A 277447868 A A G G 4 missense_variant MODERATE transcript non_Triplet 277445442 277448022 2581 1 0.0387446726075165 RFvsST 130090446 736689010 606598565 no 126.988041360437 TraesCS7A01G270300 chr7A_277733070 chr7A 277733070 T T C C 4 missense_variant MODERATE transcript non_Triplet 277730069 277733278 3210 1 0.0311526479750779 RFvsST 130090446 736689010 606598565 no 426.737592916316 TraesCS7A01G270600 chr7A_279183362 chr7A 279183362 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 279179300 279184371 5072 2 0.0394321766561514 RFvsST 130090446 736689010 606598565 no 163.114746813535 TraesCS7A01G270600 chr7A_279184557 chr7A 279184557 C C G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 279179300 279184371 5072 2 0.0394321766561514 RFvsST 130090446 736689010 606598565 no 163.114746813535 TraesCS7A01G271200 chr7A_284526902 chr7A 284526902 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 284526356 284528284 1929 4 0.207361327112494 RFvsST 130090446 736689010 606598565 no 1146.86072537493 TraesCS7A01G271200 chr7A_284527105 chr7A 284527105 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 284526356 284528284 1929 4 0.207361327112494 RFvsST 130090446 736689010 606598565 no 1146.86072537493 TraesCS7A01G271200 chr7A_284526752 chr7A 284526752 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 284526356 284528284 1929 4 0.207361327112494 RFvsST 130090446 736689010 606598565 no 1146.86072537493 TraesCS7A01G271200 chr7A_284527175 chr7A 284527175 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 284526356 284528284 1929 4 0.207361327112494 RFvsST 130090446 736689010 606598565 no 1146.86072537493 TraesCS7A01G271300 chr7A_284727047 chr7A 284727047 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 284723615 284724232 618 1 0.161812297734628 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G271600 chr7A_284786558 chr7A 284786558 G G T T 4 missense_variant MODERATE transcript unique_Triplet 284786497 284786922 426 2 0.469483568075117 RFvsST 130090446 736689010 606598565 no 132.806045613258 TraesCS7A01G271600 chr7A_284786624 chr7A 284786624 C C A A 4 missense_variant MODERATE transcript unique_Triplet 284786497 284786922 426 2 0.469483568075117 RFvsST 130090446 736689010 606598565 no 132.806045613258 TraesCS7A01G271800 chr7A_285171041 chr7A 285171041 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 285170990 285172445 1456 1 0.0686813186813187 RFvsST 130090446 736689010 606598565 no 37.1045457563033 TraesCS7A01G272100 chr7A_285575922 chr7A 285575922 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 285575873 285576714 842 1 0.118764845605701 RFvsST 130090446 736689010 606598565 no 356.859303835104 TraesCS7A01G272400 chr7A_285689148 chr7A 285689148 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 285692246 285696574 4329 1 0.0231000231000231 RFvsST 130090446 736689010 606598565 no 63.0095229643215 TraesCS7A01G272700 chr7A_286149086 chr7A 286149086 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 286149159 286149575 417 1 0.239808153477218 RFvsST 130090446 736689010 606598565 no 80.4306201639031 TraesCS7A01G273300 chr7A_287210143 chr7A 287210143 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 287212194 287212628 435 3 0.689655172413793 RFvsST 130090446 736689010 606598565 no 75.7256453758275 TraesCS7A01G273300 chr7A_287211603 chr7A 287211603 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 287212194 287212628 435 3 0.689655172413793 RFvsST 130090446 736689010 606598565 no 75.7256453758275 TraesCS7A01G273300 chr7A_287211838 chr7A 287211838 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 287212194 287212628 435 3 0.689655172413793 RFvsST 130090446 736689010 606598565 no 75.7256453758275 TraesCS7A01G276200 chr7A_288881931 chr7A 288881931 C T C T 3 synonymous_variant LOW transcript unique_Triplet 288876515 288882162 5648 1 0.0177053824362606 RFvsST 130090446 736689010 606598565 no 54.0074630349371 TraesCS7A01G277100 chr7A_290613943 chr7A 290613943 T T C C 4 synonymous_variant LOW transcript unique_Triplet 290609885 290619236 9352 1 0.0106928999144568 RFvsST 130090446 736689010 606598565 no 339.910897741924 TraesCS7A01G283700 chr7A_317129140 chr7A 317129140 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 317132662 317152130 19469 1 0.00513637064050542 RFvsST 130090446 736689010 606598565 no 116.365291866048 TraesCS7A01G284700 chr7A_324924149 chr7A 324924149 A A T T 4 missense_variant MODERATE transcript unique_Triplet 324923899 324926230 2332 1 0.0428816466552316 RFvsST 130090446 736689010 606598565 no 411.039494837158 TraesCS7A01G286700 chr7A_336755933 chr7A 336755933 C C T T 4 intron_variant MODIFIER transcript non_Triplet 336755245 336759627 4383 1 0.0228154232261008 RFvsST 130090446 736689010 606598565 no 656.620577207138 TraesCS7A01G291500 chr7A_355691124 chr7A 355691124 A A G G 4 synonymous_variant LOW transcript non_Triplet 355690245 355695645 5401 1 0.0185150897981855 RFvsST 130090446 736689010 606598565 no 675.048879657685 TraesCS7A01G315500 chr7A_449736119 chr7A 449736119 G G A A 4 intron_variant MODIFIER transcript unique_Triplet 449734621 449737090 2470 1 0.0404858299595142 RFvsST 130090446 736689010 606598565 no 128.623917307962 TraesCS7A01G316700 chr7A_452749977 chr7A 452749977 G A G A 3 synonymous_variant LOW transcript unique_Triplet 452749754 452752679 2926 1 0.0341763499658237 RFvsST 130090446 736689010 606598565 no 101.930595647156 TraesCS7A01G321000 chr7A_463205306 chr7A 463205306 C T C T 3 synonymous_variant LOW transcript unique_Triplet 463201700 463205876 4177 1 0.0239406272444338 RFvsST 130090446 736689010 606598565 no 89.3144191649974 TraesCS7A01G322400 chr7A_466508076 chr7A 466508076 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 466508230 466510258 2029 1 0.0492853622474125 RFvsST 130090446 736689010 606598565 no 44.4859897307293 TraesCS7A01G322800 chr7A_468460926 chr7A 468460926 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 468461108 468464806 3699 1 0.0270343336036767 RFvsST 130090446 736689010 606598565 no 106.758205588234 TraesCS7A01G326100 chr7A_474283642 chr7A 474283642 C C T T 4 missense_variant MODERATE transcript unique_Triplet 474281305 474284471 3167 1 0.0315756236185665 RFvsST 130090446 736689010 606598565 no 101.79434977788 TraesCS7A01G326800 chr7A_474788471 chr7A 474788471 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 474789006 474790310 1305 1 0.0766283524904215 RFvsST 130090446 736689010 606598565 no 384.668472238538 TraesCS7A01G329800 chr7A_481587624 chr7A 481587624 T T G G 4 missense_variant MODERATE transcript unique_Triplet 481582550 481588783 6234 1 0.0160410651267244 RFvsST 130090446 736689010 606598565 no 190.06881922846 TraesCS7A01G331800 chr7A_485191539 chr7A 485191539 C C T T 4 missense_variant MODERATE transcript unique_Triplet 485189348 485196485 7138 1 0.014009526478005 RFvsST 130090446 736689010 606598565 no 35.1924726672672 TraesCS7A01G338700 chr7A_495571818 chr7A 495571818 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 495572041 495573870 1830 1 0.0546448087431694 RFvsST 130090446 736689010 606598565 no 40.1415143942741 TraesCS7A01G341400 chr7A_501154590 chr7A 501154590 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 501154693 501162241 7549 1 0.0132467876539939 RFvsST 130090446 736689010 606598565 no 288.129051383457 TraesCS7A01G347800 chr7A_510495962 chr7A 510495962 A A G G 4 synonymous_variant LOW transcript non_Triplet 510495395 510496114 720 1 0.138888888888889 RFvsST 130090446 736689010 606598565 no 154.071124219638 TraesCS7A01G349100 chr7A_511931010 chr7A 511931010 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 511925494 511931142 5649 2 0.0354044963710391 RFvsST 130090446 736689010 606598565 no 212.509834351534 TraesCS7A01G349100 chr7A_511931149 chr7A 511931149 C C T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 511925494 511931142 5649 2 0.0354044963710391 RFvsST 130090446 736689010 606598565 no 212.509834351534 TraesCS7A01G349400 chr7A_512169899 chr7A 512169899 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512169425 512169814 390 2 0.512820512820513 RFvsST 130090446 736689010 606598565 no 126.937516456796 TraesCS7A01G349400 chr7A_512169637 chr7A 512169637 C C T T 4 missense_variant MODERATE transcript unique_Triplet 512169425 512169814 390 2 0.512820512820513 RFvsST 130090446 736689010 606598565 no 126.937516456796 TraesCS7A01G349600 chr7A_512337920 chr7A 512337920 G G A A 4 missense_variant MODERATE transcript unique_Triplet 512333655 512338005 4351 2 0.0459664444955183 RFvsST 130090446 736689010 606598565 no 122.612499517268 TraesCS7A01G349600 chr7A_512339202 chr7A 512339202 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512333655 512338005 4351 2 0.0459664444955183 RFvsST 130090446 736689010 606598565 no 122.612499517268 TraesCS7A01G349700 chr7A_512344076 chr7A 512344076 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 512340034 512344061 4028 1 0.0248262164846077 RFvsST 130090446 736689010 606598565 no 2.81844816192411 TraesCS7A01G350000 chr7A_512760263 chr7A 512760263 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512752275 512757527 5253 3 0.0571102227298686 RFvsST 130090446 736689010 606598565 no 126.322954526341 TraesCS7A01G350000 chr7A_512760356 chr7A 512760356 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 512752275 512757527 5253 3 0.0571102227298686 RFvsST 130090446 736689010 606598565 no 126.322954526341 TraesCS7A01G350000 chr7A_512754711 chr7A 512754711 T T C C 4 synonymous_variant LOW transcript unique_Triplet 512752275 512757527 5253 3 0.0571102227298686 RFvsST 130090446 736689010 606598565 no 126.322954526341 TraesCS7A01G350100 chr7A_512763854 chr7A 512763854 A A G G 4 missense_variant MODERATE transcript unique_Triplet 512760410 512764168 3759 2 0.0532056397978186 RFvsST 130090446 736689010 606598565 no 73.4347724014945 TraesCS7A01G350100 chr7A_512762486 chr7A 512762486 T T C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 512760410 512764168 3759 2 0.0532056397978186 RFvsST 130090446 736689010 606598565 no 73.4347724014945 TraesCS7A01G350300 chr7A_513217916 chr7A 513217916 G G A A 4 synonymous_variant LOW transcript unique_Triplet 513217421 513224254 6834 5 0.0731635937957272 RFvsST 130090446 736689010 606598565 no 348.217098557251 TraesCS7A01G350300 chr7A_513217310 chr7A 513217310 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 513217421 513224254 6834 5 0.0731635937957272 RFvsST 130090446 736689010 606598565 no 348.217098557251 TraesCS7A01G350300 chr7A_513218833 chr7A 513218833 G G C C 4 synonymous_variant LOW transcript unique_Triplet 513217421 513224254 6834 5 0.0731635937957272 RFvsST 130090446 736689010 606598565 no 348.217098557251 TraesCS7A01G350300 chr7A_513218851 chr7A 513218851 A A G G 4 synonymous_variant LOW transcript unique_Triplet 513217421 513224254 6834 5 0.0731635937957272 RFvsST 130090446 736689010 606598565 no 348.217098557251 TraesCS7A01G350300 chr7A_513217345 chr7A 513217345 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 513217421 513224254 6834 5 0.0731635937957272 RFvsST 130090446 736689010 606598565 no 348.217098557251 TraesCS7A01G351400 chr7A_514723319 chr7A 514723319 T T C C 4 synonymous_variant LOW transcript unique_Triplet 514722590 514725596 3007 1 0.033255736614566 RFvsST 130090446 736689010 606598565 no 111.801207504068 TraesCS7A01G351600 chr7A_514924004 chr7A 514924004 G A G A 3 synonymous_variant LOW transcript unique_Triplet 514921517 514925485 3969 3 0.0755857898715042 RFvsST 130090446 736689010 606598565 no 256.094649085073 TraesCS7A01G351600 chr7A_514922151 chr7A 514922151 C A C A 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 514921517 514925485 3969 3 0.0755857898715042 RFvsST 130090446 736689010 606598565 no 256.094649085073 TraesCS7A01G351600 chr7A_514925252 chr7A 514925252 G A G A 3 synonymous_variant LOW transcript unique_Triplet 514921517 514925485 3969 3 0.0755857898715042 RFvsST 130090446 736689010 606598565 no 256.094649085073 TraesCS7A01G351800 chr7A_515009798 chr7A 515009798 A G A G 3 missense_variant MODERATE transcript unique_Triplet 515009725 515010003 279 4 1.4336917562724 RFvsST 130090446 736689010 606598565 no 193.986919926852 TraesCS7A01G351800 chr7A_515009801 chr7A 515009801 A G A G 3 missense_variant MODERATE transcript unique_Triplet 515009725 515010003 279 4 1.4336917562724 RFvsST 130090446 736689010 606598565 no 193.986919926852 TraesCS7A01G351800 chr7A_515006529 chr7A 515006529 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 515009725 515010003 279 4 1.4336917562724 RFvsST 130090446 736689010 606598565 no 193.986919926852 TraesCS7A01G351800 chr7A_515009918 chr7A 515009918 G G A A 4 missense_variant MODERATE transcript unique_Triplet 515009725 515010003 279 4 1.4336917562724 RFvsST 130090446 736689010 606598565 no 193.986919926852 TraesCS7A01G351900 chr7A_515034851 chr7A 515034851 C C T T 4 stop_gained HIGH transcript non_Triplet 515034689 515035276 588 5 0.850340136054422 RFvsST 130090446 736689010 606598565 no 89.6581206501287 TraesCS7A01G351900 chr7A_515035805 chr7A 515035805 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 515034689 515035276 588 5 0.850340136054422 RFvsST 130090446 736689010 606598565 no 89.6581206501287 TraesCS7A01G351900 chr7A_515035079 chr7A 515035079 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 515034689 515035276 588 5 0.850340136054422 RFvsST 130090446 736689010 606598565 no 89.6581206501287 TraesCS7A01G351900 chr7A_515034960 chr7A 515034960 T T C C 4 missense_variant MODERATE transcript non_Triplet 515034689 515035276 588 5 0.850340136054422 RFvsST 130090446 736689010 606598565 no 89.6581206501287 TraesCS7A01G351900 chr7A_515035787 chr7A 515035787 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 515034689 515035276 588 5 0.850340136054422 RFvsST 130090446 736689010 606598565 no 89.6581206501287 TraesCS7A01G352200 chr7A_515879681 chr7A 515879681 A G A G 3 missense_variant MODERATE transcript non_Triplet 515879250 515880713 1464 1 0.0683060109289618 RFvsST 130090446 736689010 606598565 no 1089.06791612108 TraesCS7A01G352300 chr7A_515984139 chr7A 515984139 C T C T 3 synonymous_variant LOW transcript unique_Triplet 515983975 515985513 1539 2 0.129954515919428 RFvsST 130090446 736689010 606598565 no 92.0482775135015 TraesCS7A01G352300 chr7A_515984231 chr7A 515984231 G C G C 3 missense_variant MODERATE transcript unique_Triplet 515983975 515985513 1539 2 0.129954515919428 RFvsST 130090446 736689010 606598565 no 92.0482775135015 TraesCS7A01G358100 chr7A_527539261 chr7A 527539261 C C T T 4 synonymous_variant LOW transcript unique_Triplet 527534607 527540462 5856 1 0.0170765027322404 RFvsST 130090446 736689010 606598565 no 1017.92454611894 TraesCS7A01G358600 chr7A_531730013 chr7A 531730013 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 531730235 531734077 3843 1 0.0260213374967473 RFvsST 130090446 736689010 606598565 no 28.7479128117039 TraesCS7A01G365900 chr7A_539707473 chr7A 539707473 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 539712444 539714521 2078 2 0.0962463907603465 RFvsST 130090446 736689010 606598565 no 101.237066195502 TraesCS7A01G365900 chr7A_539707472 chr7A 539707472 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 539712444 539714521 2078 2 0.0962463907603465 RFvsST 130090446 736689010 606598565 no 101.237066195502 TraesCS7A01G372900 chr7A_546042914 chr7A 546042914 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 546046025 546047040 1016 1 0.0984251968503937 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G378000 chr7A_553378005 chr7A 553378005 C C T T 4 missense_variant MODERATE transcript unique_Triplet 553373351 553379439 6089 1 0.0164230579733946 RFvsST 130090446 736689010 606598565 no 93.1803364145369 TraesCS7A01G381200 chr7A_556170449 chr7A 556170449 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 556162072 556167915 5844 1 0.0171115674195756 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G388800 chr7A_564347432 chr7A 564347432 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 564345742 564347157 1416 1 0.0706214689265537 RFvsST 130090446 736689010 606598565 no 66.4932453571849 TraesCS7A01G401900 chr7A_581344648 chr7A 581344648 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 581344730 581345350 621 1 0.161030595813205 RFvsST 130090446 736689010 606598565 no 178.076173061035 TraesCS7A01G402000 chr7A_581353168 chr7A 581353168 G G C C 4 missense_variant MODERATE transcript unique_Triplet 581350173 581357386 7214 2 0.0277238702522872 RFvsST 130090446 736689010 606598565 no 50.2114554880177 TraesCS7A01G402000 chr7A_581354206 chr7A 581354206 T T C C 4 missense_variant MODERATE transcript unique_Triplet 581350173 581357386 7214 2 0.0277238702522872 RFvsST 130090446 736689010 606598565 no 50.2114554880177 TraesCS7A01G402100 chr7A_581375928 chr7A 581375928 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 581368833 581372258 3426 2 0.0583771161704612 RFvsST 130090446 736689010 606598565 no 20.3691679349781 TraesCS7A01G402100 chr7A_581376231 chr7A 581376231 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 581368833 581372258 3426 2 0.0583771161704612 RFvsST 130090446 736689010 606598565 no 20.3691679349781 TraesCS7A01G402300 chr7A_581432254 chr7A 581432254 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 581429775 581432393 2619 1 0.0381825124093165 RFvsST 130090446 736689010 606598565 no 230.501096619742 TraesCS7A01G402800 chr7A_582574369 chr7A 582574369 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582572023 chr7A 582572023 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582572360 chr7A 582572360 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582569598 chr7A 582569598 T C T C 3 missense_variant MODERATE transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582572560 chr7A 582572560 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582571882 chr7A 582571882 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582574135 chr7A 582574135 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402800 chr7A_582569906 chr7A 582569906 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 582569207 582569622 416 8 1.92307692307692 RFvsST 130090446 736689010 606598565 no 18.6507025265208 TraesCS7A01G402900 chr7A_582637301 chr7A 582637301 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 582633265 582637058 3794 1 0.0263574064312072 RFvsST 130090446 736689010 606598565 no 7.74561317368475 TraesCS7A01G403000 chr7A_582635999 chr7A 582635999 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403000 chr7A_582636598 chr7A 582636598 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403000 chr7A_582635974 chr7A 582635974 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403000 chr7A_582635626 chr7A 582635626 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403000 chr7A_582634591 chr7A 582634591 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403000 chr7A_582636024 chr7A 582636024 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 582638428 582638673 246 6 2.4390243902439 RFvsST 130090446 736689010 606598565 no 47.7220175533817 TraesCS7A01G403300 chr7A_583204124 chr7A 583204124 A T A T 3 synonymous_variant LOW transcript nonUnique_Triplet 583199745 583207347 7603 1 0.0131527028804419 RFvsST 130090446 736689010 606598565 no 78.1498381186791 TraesCS7A01G405600 chr7A_589240632 chr7A 589240632 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 589237774 589240591 2818 2 0.07097232079489 RFvsST 130090446 736689010 606598565 no 830.613040258055 TraesCS7A01G405600 chr7A_589240604 chr7A 589240604 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 589237774 589240591 2818 2 0.07097232079489 RFvsST 130090446 736689010 606598565 no 830.613040258055 TraesCS7A01G405900 chr7A_589456381 chr7A 589456381 C G C G 3 synonymous_variant LOW transcript non_Triplet 589455541 589457032 1492 2 0.134048257372654 RFvsST 130090446 736689010 606598565 no 82.7416931061781 TraesCS7A01G405900 chr7A_589456264 chr7A 589456264 G A G A 3 synonymous_variant LOW transcript non_Triplet 589455541 589457032 1492 2 0.134048257372654 RFvsST 130090446 736689010 606598565 no 82.7416931061781 TraesCS7A01G406100 chr7A_589751859 chr7A 589751859 A G A G 3 missense_variant MODERATE transcript non_Triplet 589751769 589756038 4270 3 0.0702576112412178 RFvsST 130090446 736689010 606598565 no 191.403191051835 TraesCS7A01G406100 chr7A_589756223 chr7A 589756223 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 589751769 589756038 4270 3 0.0702576112412178 RFvsST 130090446 736689010 606598565 no 191.403191051835 TraesCS7A01G406100 chr7A_589752239 chr7A 589752239 C T C T 3 synonymous_variant LOW transcript non_Triplet 589751769 589756038 4270 3 0.0702576112412178 RFvsST 130090446 736689010 606598565 no 191.403191051835 TraesCS7A01G406200 chr7A_589760089 chr7A 589760089 G C G C 3 missense_variant MODERATE transcript unique_Triplet 589756749 589763251 6503 2 0.0307550361371675 RFvsST 130090446 736689010 606598565 no 354.105578900368 TraesCS7A01G406200 chr7A_589763379 chr7A 589763379 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 589756749 589763251 6503 2 0.0307550361371675 RFvsST 130090446 736689010 606598565 no 354.105578900368 TraesCS7A01G406700 chr7A_592047660 chr7A 592047660 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 592046195 592046569 375 1 0.266666666666667 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G406900 chr7A_592262705 chr7A 592262705 A G A G 3 missense_variant MODERATE transcript unique_Triplet 592261691 592262944 1254 1 0.0797448165869219 RFvsST 130090446 736689010 606598565 no 88.0758377988842 TraesCS7A01G407000 chr7A_592301939 chr7A 592301939 C C T T 4 missense_variant MODERATE transcript unique_Triplet 592299711 592302161 2451 1 0.0407996736026112 RFvsST 130090446 736689010 606598565 no 165.917955178924 TraesCS7A01G407200 chr7A_592907405 chr7A 592907405 T T C C 4 missense_variant MODERATE transcript unique_Triplet 592906163 592909141 2979 1 0.0335683115139308 RFvsST 130090446 736689010 606598565 no 65.038775685851 TraesCS7A01G407300 chr7A_592921730 chr7A 592921730 G G A A 4 synonymous_variant LOW transcript unique_Triplet 592916239 592921777 5539 3 0.0541614009749052 RFvsST 130090446 736689010 606598565 no 41.9670617672388 TraesCS7A01G407300 chr7A_592921829 chr7A 592921829 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 592916239 592921777 5539 3 0.0541614009749052 RFvsST 130090446 736689010 606598565 no 41.9670617672388 TraesCS7A01G407300 chr7A_592916143 chr7A 592916143 A C A C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 592916239 592921777 5539 3 0.0541614009749052 RFvsST 130090446 736689010 606598565 no 41.9670617672388 TraesCS7A01G407800 chr7A_593458013 chr7A 593458013 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 593458114 593459242 1129 1 0.0885739592559787 RFvsST 130090446 736689010 606598565 no 294.557596011637 TraesCS7A01G408000 chr7A_593679502 chr7A 593679502 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408000 chr7A_593683895 chr7A 593683895 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408000 chr7A_593680995 chr7A 593680995 A C A C 3 intron_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408000 chr7A_593679557 chr7A 593679557 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408000 chr7A_593680830 chr7A 593680830 A G A G 3 intron_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408000 chr7A_593681325 chr7A 593681325 C T C T 3 intron_variant MODIFIER transcript non_Triplet 593679783 593682167 2385 6 0.251572327044025 RFvsST 130090446 736689010 606598565 no 4.13117637793784 TraesCS7A01G408600 chr7A_594554916 chr7A 594554916 A G A G 3 synonymous_variant LOW transcript unique_Triplet 594554910 594557901 2992 4 0.133689839572192 RFvsST 130090446 736689010 606598565 no 120.659051253039 TraesCS7A01G408600 chr7A_594554872 chr7A 594554872 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 594554910 594557901 2992 4 0.133689839572192 RFvsST 130090446 736689010 606598565 no 120.659051253039 TraesCS7A01G408600 chr7A_594557566 chr7A 594557566 A C A C 3 missense_variant MODERATE transcript unique_Triplet 594554910 594557901 2992 4 0.133689839572192 RFvsST 130090446 736689010 606598565 no 120.659051253039 TraesCS7A01G408600 chr7A_594554689 chr7A 594554689 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 594554910 594557901 2992 4 0.133689839572192 RFvsST 130090446 736689010 606598565 no 120.659051253039 TraesCS7A01G408900 chr7A_595074108 chr7A 595074108 C T C T 3 missense_variant MODERATE transcript unique_Triplet 595070176 595074896 4721 4 0.0847278119042576 RFvsST 130090446 736689010 606598565 no 113.18938675785 TraesCS7A01G408900 chr7A_595075022 chr7A 595075022 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 595070176 595074896 4721 4 0.0847278119042576 RFvsST 130090446 736689010 606598565 no 113.18938675785 TraesCS7A01G408900 chr7A_595074312 chr7A 595074312 A T A T 3 missense_variant MODERATE transcript unique_Triplet 595070176 595074896 4721 4 0.0847278119042576 RFvsST 130090446 736689010 606598565 no 113.18938675785 TraesCS7A01G408900 chr7A_595074650 chr7A 595074650 T C T C 3 synonymous_variant LOW transcript unique_Triplet 595070176 595074896 4721 4 0.0847278119042576 RFvsST 130090446 736689010 606598565 no 113.18938675785 TraesCS7A01G409100 chr7A_595199582 chr7A 595199582 A G A G 3 synonymous_variant LOW transcript unique_Triplet 595198599 595199765 1167 1 0.0856898029134533 RFvsST 130090446 736689010 606598565 no 236.206439677545 TraesCS7A01G409200 chr7A_596039291 chr7A 596039291 A G A G 3 synonymous_variant LOW transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596039713 chr7A 596039713 T C T C 3 missense_variant MODERATE transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596039243 chr7A 596039243 G A G A 3 synonymous_variant LOW transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596032446 chr7A 596032446 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596035856 chr7A 596035856 T C T C 3 missense_variant MODERATE transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596038933 chr7A 596038933 C T C T 3 missense_variant MODERATE transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409200 chr7A_596039253 chr7A 596039253 C A C A 3 missense_variant MODERATE transcript unique_Triplet 596035838 596039817 3980 7 0.175879396984925 RFvsST 130090446 736689010 606598565 no 281.924911744289 TraesCS7A01G409800 chr7A_596688652 chr7A 596688652 C T C T 3 missense_variant MODERATE transcript unique_Triplet 596684866 596688890 4025 3 0.0745341614906832 RFvsST 130090446 736689010 606598565 no 39.3889939909017 TraesCS7A01G409800 chr7A_596685453 chr7A 596685453 G T G T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 596684866 596688890 4025 3 0.0745341614906832 RFvsST 130090446 736689010 606598565 no 39.3889939909017 TraesCS7A01G409800 chr7A_596688461 chr7A 596688461 T C T C 3 synonymous_variant LOW transcript unique_Triplet 596684866 596688890 4025 3 0.0745341614906832 RFvsST 130090446 736689010 606598565 no 39.3889939909017 TraesCS7A01G409900 chr7A_596718566 chr7A 596718566 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 596714702 596716714 2013 4 0.198708395429707 RFvsST 130090446 736689010 606598565 no 270.826207890127 TraesCS7A01G409900 chr7A_596714818 chr7A 596714818 C T C T 3 synonymous_variant LOW transcript unique_Triplet 596714702 596716714 2013 4 0.198708395429707 RFvsST 130090446 736689010 606598565 no 270.826207890127 TraesCS7A01G409900 chr7A_596717267 chr7A 596717267 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 596714702 596716714 2013 4 0.198708395429707 RFvsST 130090446 736689010 606598565 no 270.826207890127 TraesCS7A01G409900 chr7A_596714949 chr7A 596714949 T C T C 3 missense_variant MODERATE transcript unique_Triplet 596714702 596716714 2013 4 0.198708395429707 RFvsST 130090446 736689010 606598565 no 270.826207890127 TraesCS7A01G410000 chr7A_596723043 chr7A 596723043 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 596718384 596719420 1037 2 0.192864030858245 RFvsST 130090446 736689010 606598565 no 697.855119954326 TraesCS7A01G410000 chr7A_596723091 chr7A 596723091 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 596718384 596719420 1037 2 0.192864030858245 RFvsST 130090446 736689010 606598565 no 697.855119954326 TraesCS7A01G410100 chr7A_596728486 chr7A 596728486 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 596723107 596725420 2314 1 0.0432152117545376 RFvsST 130090446 736689010 606598565 no 202.019301023604 TraesCS7A01G410200 chr7A_596729048 chr7A 596729048 C T C T 3 synonymous_variant LOW transcript unique_Triplet 596728490 596730694 2205 4 0.18140589569161 RFvsST 130090446 736689010 606598565 no 68.0994362218632 TraesCS7A01G410200 chr7A_596729153 chr7A 596729153 A G A G 3 synonymous_variant LOW transcript unique_Triplet 596728490 596730694 2205 4 0.18140589569161 RFvsST 130090446 736689010 606598565 no 68.0994362218632 TraesCS7A01G410200 chr7A_596729120 chr7A 596729120 G A G A 3 synonymous_variant LOW transcript unique_Triplet 596728490 596730694 2205 4 0.18140589569161 RFvsST 130090446 736689010 606598565 no 68.0994362218632 TraesCS7A01G410200 chr7A_596729141 chr7A 596729141 C G C G 3 synonymous_variant LOW transcript unique_Triplet 596728490 596730694 2205 4 0.18140589569161 RFvsST 130090446 736689010 606598565 no 68.0994362218632 TraesCS7A01G410700 chr7A_598222275 chr7A 598222275 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 598216896 598222200 5305 3 0.056550424128181 RFvsST 130090446 736689010 606598565 no 402.55080129869 TraesCS7A01G410700 chr7A_598222441 chr7A 598222441 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 598216896 598222200 5305 3 0.056550424128181 RFvsST 130090446 736689010 606598565 no 402.55080129869 TraesCS7A01G410700 chr7A_598216756 chr7A 598216756 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 598216896 598222200 5305 3 0.056550424128181 RFvsST 130090446 736689010 606598565 no 402.55080129869 TraesCS7A01G411300 chr7A_602099110 chr7A 602099110 G A G A 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 602098802 602099914 1113 2 0.179694519317161 RFvsST 130090446 736689010 606598565 no 167.831995224008 TraesCS7A01G411300 chr7A_602099213 chr7A 602099213 C T C T 3 synonymous_variant LOW transcript non_Triplet 602098802 602099914 1113 2 0.179694519317161 RFvsST 130090446 736689010 606598565 no 167.831995224008 TraesCS7A01G411400 chr7A_602233266 chr7A 602233266 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 602231584 602233082 1499 2 0.133422281521014 RFvsST 130090446 736689010 606598565 no 92.4591124694133 TraesCS7A01G411400 chr7A_602233090 chr7A 602233090 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 602231584 602233082 1499 2 0.133422281521014 RFvsST 130090446 736689010 606598565 no 92.4591124694133 TraesCS7A01G412000 chr7A_602986744 chr7A 602986744 T C T C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 602986637 602988333 1697 4 0.235710076605775 RFvsST 130090446 736689010 606598565 no 239.345716248899 TraesCS7A01G412000 chr7A_602987478 chr7A 602987478 C T C T 3 synonymous_variant LOW transcript unique_Triplet 602986637 602988333 1697 4 0.235710076605775 RFvsST 130090446 736689010 606598565 no 239.345716248899 TraesCS7A01G412000 chr7A_602987571 chr7A 602987571 T C T C 3 synonymous_variant LOW transcript unique_Triplet 602986637 602988333 1697 4 0.235710076605775 RFvsST 130090446 736689010 606598565 no 239.345716248899 TraesCS7A01G412000 chr7A_602987742 chr7A 602987742 A G A G 3 synonymous_variant LOW transcript unique_Triplet 602986637 602988333 1697 4 0.235710076605775 RFvsST 130090446 736689010 606598565 no 239.345716248899 TraesCS7A01G412100 chr7A_603025718 chr7A 603025718 T G T G 3 synonymous_variant LOW transcript non_Triplet 603023811 603026317 2507 2 0.0797766254487435 RFvsST 130090446 736689010 606598565 no 82.4859022904441 TraesCS7A01G412100 chr7A_603026074 chr7A 603026074 G C G C 3 missense_variant MODERATE transcript non_Triplet 603023811 603026317 2507 2 0.0797766254487435 RFvsST 130090446 736689010 606598565 no 82.4859022904441 TraesCS7A01G412400 chr7A_603294368 chr7A 603294368 C C T T 4 synonymous_variant LOW transcript unique_Triplet 603291733 603294860 3128 4 0.127877237851662 RFvsST 130090446 736689010 606598565 no 118.692537616546 TraesCS7A01G412400 chr7A_603294375 chr7A 603294375 A A G G 4 missense_variant MODERATE transcript unique_Triplet 603291733 603294860 3128 4 0.127877237851662 RFvsST 130090446 736689010 606598565 no 118.692537616546 TraesCS7A01G412400 chr7A_603294895 chr7A 603294895 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 603291733 603294860 3128 4 0.127877237851662 RFvsST 130090446 736689010 606598565 no 118.692537616546 TraesCS7A01G412400 chr7A_603293505 chr7A 603293505 T T C C 4 synonymous_variant LOW transcript unique_Triplet 603291733 603294860 3128 4 0.127877237851662 RFvsST 130090446 736689010 606598565 no 118.692537616546 TraesCS7A01G413700 chr7A_604394179 chr7A 604394179 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 604388915 604395593 6679 3 0.044916903728103 RFvsST 130090446 736689010 606598565 no 184.309270356971 TraesCS7A01G413700 chr7A_604388849 chr7A 604388849 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 604388915 604395593 6679 3 0.044916903728103 RFvsST 130090446 736689010 606598565 no 184.309270356971 TraesCS7A01G413700 chr7A_604385594 chr7A 604385594 C T C T 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 604388915 604395593 6679 3 0.044916903728103 RFvsST 130090446 736689010 606598565 no 184.309270356971 TraesCS7A01G414500 chr7A_605761795 chr7A 605761795 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 605759931 605771920 11990 1 0.00834028356964137 RFvsST 130090446 736689010 606598565 no 259.336668672083 TraesCS7A01G415000 chr7A_606327880 chr7A 606327880 T C T C 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 606322596 606327687 5092 2 0.0392772977219167 RFvsST 130090446 736689010 606598565 no 294.095712997996 TraesCS7A01G415000 chr7A_606322241 chr7A 606322241 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 606322596 606327687 5092 2 0.0392772977219167 RFvsST 130090446 736689010 606598565 no 294.095712997996 TraesCS7A01G415100 chr7A_606550405 chr7A 606550405 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 606550023 606559498 9476 1 0.0105529759392149 RFvsST 130090446 736689010 606598565 no 16.4185902886359 TraesCS7A01G415400 chr7A_606579012 chr7A 606579012 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 606579116 606580403 1288 1 0.077639751552795 RFvsST 130090446 736689010 606598565 no 146.396309989794 TraesCS7A01G415500 chr7A_607544913 chr7A 607544913 G A G A 3 synonymous_variant LOW transcript non_Triplet 607543945 607545261 1317 2 0.151860288534548 RFvsST 130090446 736689010 606598565 no 356.179049478024 TraesCS7A01G415500 chr7A_607543989 chr7A 607543989 T C T C 3 synonymous_variant LOW transcript non_Triplet 607543945 607545261 1317 2 0.151860288534548 RFvsST 130090446 736689010 606598565 no 356.179049478024 TraesCS7A01G415600 chr7A_607554055 chr7A 607554055 A G A G 3 synonymous_variant LOW transcript non_Triplet 607552719 607556073 3355 4 0.119225037257824 RFvsST 130090446 736689010 606598565 no 192.021365199699 TraesCS7A01G415600 chr7A_607556122 chr7A 607556122 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 607552719 607556073 3355 4 0.119225037257824 RFvsST 130090446 736689010 606598565 no 192.021365199699 TraesCS7A01G415600 chr7A_607555580 chr7A 607555580 G A G A 3 synonymous_variant LOW transcript non_Triplet 607552719 607556073 3355 4 0.119225037257824 RFvsST 130090446 736689010 606598565 no 192.021365199699 TraesCS7A01G415600 chr7A_607553665 chr7A 607553665 C T C T 3 missense_variant MODERATE transcript non_Triplet 607552719 607556073 3355 4 0.119225037257824 RFvsST 130090446 736689010 606598565 no 192.021365199699 TraesCS7A01G416200 chr7A_608361175 chr7A 608361175 T G T G 3 missense_variant MODERATE transcript unique_Triplet 608360377 608364220 3844 1 0.0260145681581686 RFvsST 130090446 736689010 606598565 no 216.06414099006 TraesCS7A01G416300 chr7A_608394789 chr7A 608394789 G C G C 3 missense_variant MODERATE transcript unique_Triplet 608394688 608397992 3305 2 0.0605143721633888 RFvsST 130090446 736689010 606598565 no 506.867413034586 TraesCS7A01G416300 chr7A_608394729 chr7A 608394729 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 608394688 608397992 3305 2 0.0605143721633888 RFvsST 130090446 736689010 606598565 no 506.867413034586 TraesCS7A01G416500 chr7A_608454083 chr7A 608454083 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 608452384 608452830 447 2 0.447427293064877 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G416500 chr7A_608455251 chr7A 608455251 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 608452384 608452830 447 2 0.447427293064877 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G416800 chr7A_608675856 chr7A 608675856 G C G C 3 missense_variant MODERATE transcript unique_Triplet 608674155 608677343 3189 1 0.0313577924114142 RFvsST 130090446 736689010 606598565 no 190.489977823845 TraesCS7A01G419200 chr7A_610685433 chr7A 610685433 T C T C 3 synonymous_variant LOW transcript unique_Triplet 610678884 610686345 7462 5 0.0670061645671402 RFvsST 130090446 736689010 606598565 no 564.199465660029 TraesCS7A01G419200 chr7A_610685451 chr7A 610685451 C G C G 3 synonymous_variant LOW transcript unique_Triplet 610678884 610686345 7462 5 0.0670061645671402 RFvsST 130090446 736689010 606598565 no 564.199465660029 TraesCS7A01G419200 chr7A_610685862 chr7A 610685862 G G A A 4 synonymous_variant LOW transcript unique_Triplet 610678884 610686345 7462 5 0.0670061645671402 RFvsST 130090446 736689010 606598565 no 564.199465660029 TraesCS7A01G419200 chr7A_610685412 chr7A 610685412 G C G C 3 synonymous_variant LOW transcript unique_Triplet 610678884 610686345 7462 5 0.0670061645671402 RFvsST 130090446 736689010 606598565 no 564.199465660029 TraesCS7A01G419200 chr7A_610685628 chr7A 610685628 A C A C 3 missense_variant MODERATE transcript unique_Triplet 610678884 610686345 7462 5 0.0670061645671402 RFvsST 130090446 736689010 606598565 no 564.199465660029 TraesCS7A01G419300 chr7A_610928551 chr7A 610928551 C T C T 3 missense_variant MODERATE transcript unique_Triplet 610923296 610930023 6728 4 0.0594530321046373 RFvsST 130090446 736689010 606598565 no 183.525391411909 TraesCS7A01G419300 chr7A_610928480 chr7A 610928480 C G C G 3 synonymous_variant LOW transcript unique_Triplet 610923296 610930023 6728 4 0.0594530321046373 RFvsST 130090446 736689010 606598565 no 183.525391411909 TraesCS7A01G419300 chr7A_610926386 chr7A 610926386 C T C T 3 synonymous_variant LOW transcript unique_Triplet 610923296 610930023 6728 4 0.0594530321046373 RFvsST 130090446 736689010 606598565 no 183.525391411909 TraesCS7A01G419300 chr7A_610927657 chr7A 610927657 G A G A 3 missense_variant MODERATE transcript unique_Triplet 610923296 610930023 6728 4 0.0594530321046373 RFvsST 130090446 736689010 606598565 no 183.525391411909 TraesCS7A01G419400 chr7A_610930266 chr7A 610930266 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 610932163 610933978 1816 2 0.110132158590308 RFvsST 130090446 736689010 606598565 no 1266.36029261603 TraesCS7A01G419400 chr7A_610930285 chr7A 610930285 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 610932163 610933978 1816 2 0.110132158590308 RFvsST 130090446 736689010 606598565 no 1266.36029261603 TraesCS7A01G419700 chr7A_611346845 chr7A 611346845 C C G G 4 missense_variant MODERATE transcript non_Triplet 611346760 611348019 1260 2 0.158730158730159 RFvsST 130090446 736689010 606598565 no 87.4262318534461 TraesCS7A01G419700 chr7A_611347300 chr7A 611347300 T C T C 3 missense_variant MODERATE transcript non_Triplet 611346760 611348019 1260 2 0.158730158730159 RFvsST 130090446 736689010 606598565 no 87.4262318534461 TraesCS7A01G419900 chr7A_611493830 chr7A 611493830 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 611488421 611494157 5737 1 0.0174307129161583 RFvsST 130090446 736689010 606598565 no 128.400494422308 TraesCS7A01G421100 chr7A_612369863 chr7A 612369863 T A T A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 612369861 612370619 759 1 0.131752305665349 RFvsST 130090446 736689010 606598565 no 50.6717962235231 TraesCS7A01G422300 chr7A_612976479 chr7A 612976479 G A G A 3 missense_variant MODERATE transcript unique_Triplet 612975494 612976597 1104 3 0.271739130434783 RFvsST 130090446 736689010 606598565 no 296.67024881366 TraesCS7A01G422300 chr7A_612975787 chr7A 612975787 C T C T 3 missense_variant MODERATE transcript unique_Triplet 612975494 612976597 1104 3 0.271739130434783 RFvsST 130090446 736689010 606598565 no 296.67024881366 TraesCS7A01G422300 chr7A_612975441 chr7A 612975441 G T G T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 612975494 612976597 1104 3 0.271739130434783 RFvsST 130090446 736689010 606598565 no 296.67024881366 TraesCS7A01G422700 chr7A_613177433 chr7A 613177433 G A G A 3 synonymous_variant LOW transcript unique_Triplet 613176735 613177538 804 2 0.248756218905473 RFvsST 130090446 736689010 606598565 no 346.86752529533 TraesCS7A01G422700 chr7A_613177328 chr7A 613177328 C T C T 3 synonymous_variant LOW transcript unique_Triplet 613176735 613177538 804 2 0.248756218905473 RFvsST 130090446 736689010 606598565 no 346.86752529533 TraesCS7A01G422900 chr7A_613632803 chr7A 613632803 G C G C 3 missense_variant MODERATE transcript non_Triplet 613631784 613632989 1206 1 0.0829187396351575 RFvsST 130090446 736689010 606598565 no 31.7829700231853 TraesCS7A01G424000 chr7A_617007991 chr7A 617007991 A G A G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 617004582 617008072 3491 2 0.0572901747350329 RFvsST 130090446 736689010 606598565 no 267.931178746565 TraesCS7A01G424000 chr7A_617006574 chr7A 617006574 A G A G 3 synonymous_variant LOW transcript non_Triplet 617004582 617008072 3491 2 0.0572901747350329 RFvsST 130090446 736689010 606598565 no 267.931178746565 TraesCS7A01G424300 chr7A_617577406 chr7A 617577406 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424300 chr7A_617577578 chr7A 617577578 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424300 chr7A_617577521 chr7A 617577521 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424300 chr7A_617577645 chr7A 617577645 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424300 chr7A_617577542 chr7A 617577542 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424300 chr7A_617579288 chr7A 617579288 T T C C 4 synonymous_variant LOW transcript unique_Triplet 617577656 617580261 2606 6 0.230237912509593 RFvsST 130090446 736689010 606598565 no 121.404522329151 TraesCS7A01G424700 chr7A_617853241 chr7A 617853241 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 617853350 617855127 1778 2 0.112485939257593 RFvsST 130090446 736689010 606598565 no 203.45542581393 TraesCS7A01G424700 chr7A_617853343 chr7A 617853343 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 617853350 617855127 1778 2 0.112485939257593 RFvsST 130090446 736689010 606598565 no 203.45542581393 TraesCS7A01G424800 chr7A_617949279 chr7A 617949279 C G C G 3 intron_variant MODIFIER transcript unique_Triplet 617948845 617949716 872 1 0.114678899082569 RFvsST 130090446 736689010 606598565 no 366.941996595034 TraesCS7A01G425000 chr7A_618082356 chr7A 618082356 C A C A 3 missense_variant MODERATE transcript unique_Triplet 618079200 618084311 5112 3 0.0586854460093897 RFvsST 130090446 736689010 606598565 no 22.0267615564405 TraesCS7A01G425000 chr7A_618084241 chr7A 618084241 G A G A 3 missense_variant MODERATE transcript unique_Triplet 618079200 618084311 5112 3 0.0586854460093897 RFvsST 130090446 736689010 606598565 no 22.0267615564405 TraesCS7A01G425000 chr7A_618084277 chr7A 618084277 T T C C 4 missense_variant MODERATE transcript unique_Triplet 618079200 618084311 5112 3 0.0586854460093897 RFvsST 130090446 736689010 606598565 no 22.0267615564405 TraesCS7A01G426200 chr7A_619252209 chr7A 619252209 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619254234 chr7A 619254234 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619252426 chr7A 619252426 G A G A 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619250070 chr7A 619250070 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619255652 chr7A 619255652 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619253127 chr7A 619253127 T C T C 3 missense_variant MODERATE transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619252303 chr7A 619252303 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619251616 chr7A 619251616 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619250054 chr7A 619250054 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619255694 chr7A 619255694 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619252326 chr7A 619252326 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426200 chr7A_619255390 chr7A 619255390 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 619252393 619254224 1832 12 0.655021834061135 RFvsST 130090446 736689010 606598565 no 14.091063407548 TraesCS7A01G426400 chr7A_619311455 chr7A 619311455 G A G A 3 synonymous_variant LOW transcript non_Triplet 619308651 619312393 3743 1 0.0267165375367352 RFvsST 130090446 736689010 606598565 no 301.538584976254 TraesCS7A01G427100 chr7A_620370149 chr7A 620370149 A G A G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 620370075 620371307 1233 1 0.08110300081103 RFvsST 130090446 736689010 606598565 no 576.184607166554 TraesCS7A01G427300 chr7A_620487199 chr7A 620487199 G T G T 3 missense_variant MODERATE transcript non_Triplet 620487009 620488366 1358 3 0.220913107511046 RFvsST 130090446 736689010 606598565 no 91.932876745364 TraesCS7A01G427300 chr7A_620487299 chr7A 620487299 C G C G 3 missense_variant MODERATE transcript non_Triplet 620487009 620488366 1358 3 0.220913107511046 RFvsST 130090446 736689010 606598565 no 91.932876745364 TraesCS7A01G427300 chr7A_620488068 chr7A 620488068 G C G C 3 missense_variant MODERATE transcript non_Triplet 620487009 620488366 1358 3 0.220913107511046 RFvsST 130090446 736689010 606598565 no 91.932876745364 TraesCS7A01G427400 chr7A_620533841 chr7A 620533841 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 620534124 620534602 479 3 0.626304801670146 RFvsST 130090446 736689010 606598565 no 196.607399118259 TraesCS7A01G427400 chr7A_620534073 chr7A 620534073 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 620534124 620534602 479 3 0.626304801670146 RFvsST 130090446 736689010 606598565 no 196.607399118259 TraesCS7A01G427400 chr7A_620533958 chr7A 620533958 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 620534124 620534602 479 3 0.626304801670146 RFvsST 130090446 736689010 606598565 no 196.607399118259 TraesCS7A01G428200 chr7A_621564474 chr7A 621564474 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 621564527 621567165 2639 5 0.189465706707086 RFvsST 130090446 736689010 606598565 no 43.9754214910384 TraesCS7A01G428200 chr7A_621564457 chr7A 621564457 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 621564527 621567165 2639 5 0.189465706707086 RFvsST 130090446 736689010 606598565 no 43.9754214910384 TraesCS7A01G428200 chr7A_621566601 chr7A 621566601 C G C G 3 synonymous_variant LOW transcript non_Triplet 621564527 621567165 2639 5 0.189465706707086 RFvsST 130090446 736689010 606598565 no 43.9754214910384 TraesCS7A01G428200 chr7A_621566517 chr7A 621566517 C T C T 3 synonymous_variant LOW transcript non_Triplet 621564527 621567165 2639 5 0.189465706707086 RFvsST 130090446 736689010 606598565 no 43.9754214910384 TraesCS7A01G428200 chr7A_621567299 chr7A 621567299 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 621564527 621567165 2639 5 0.189465706707086 RFvsST 130090446 736689010 606598565 no 43.9754214910384 TraesCS7A01G428300 chr7A_621584196 chr7A 621584196 G A G A 3 missense_variant MODERATE transcript unique_Triplet 621583127 621585435 2309 2 0.086617583369424 RFvsST 130090446 736689010 606598565 no 141.675591074673 TraesCS7A01G428300 chr7A_621584327 chr7A 621584327 G A G A 3 missense_variant MODERATE transcript unique_Triplet 621583127 621585435 2309 2 0.086617583369424 RFvsST 130090446 736689010 606598565 no 141.675591074673 TraesCS7A01G428500 chr7A_621913456 chr7A 621913456 A T A T 3 missense_variant MODERATE transcript unique_Triplet 621911086 621913601 2516 4 0.158982511923688 RFvsST 130090446 736689010 606598565 no 132.816560296289 TraesCS7A01G428500 chr7A_621913557 chr7A 621913557 A C A C 3 synonymous_variant LOW transcript unique_Triplet 621911086 621913601 2516 4 0.158982511923688 RFvsST 130090446 736689010 606598565 no 132.816560296289 TraesCS7A01G428500 chr7A_621911094 chr7A 621911094 T C T C 3 synonymous_variant LOW transcript unique_Triplet 621911086 621913601 2516 4 0.158982511923688 RFvsST 130090446 736689010 606598565 no 132.816560296289 TraesCS7A01G428500 chr7A_621912201 chr7A 621912201 T G T G 3 synonymous_variant LOW transcript unique_Triplet 621911086 621913601 2516 4 0.158982511923688 RFvsST 130090446 736689010 606598565 no 132.816560296289 TraesCS7A01G428700 chr7A_622371641 chr7A 622371641 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 622368121 622371601 3481 5 0.143636885952313 RFvsST 130090446 736689010 606598565 no 45.5435819072332 TraesCS7A01G428700 chr7A_622371535 chr7A 622371535 A G A G 3 synonymous_variant LOW transcript unique_Triplet 622368121 622371601 3481 5 0.143636885952313 RFvsST 130090446 736689010 606598565 no 45.5435819072332 TraesCS7A01G428700 chr7A_622371993 chr7A 622371993 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 622368121 622371601 3481 5 0.143636885952313 RFvsST 130090446 736689010 606598565 no 45.5435819072332 TraesCS7A01G428700 chr7A_622371927 chr7A 622371927 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 622368121 622371601 3481 5 0.143636885952313 RFvsST 130090446 736689010 606598565 no 45.5435819072332 TraesCS7A01G428700 chr7A_622370316 chr7A 622370316 A G A G 3 synonymous_variant LOW transcript unique_Triplet 622368121 622371601 3481 5 0.143636885952313 RFvsST 130090446 736689010 606598565 no 45.5435819072332 TraesCS7A01G428800 chr7A_622372073 chr7A 622372073 C A C A 3 synonymous_variant LOW transcript non_Triplet 622372049 622373487 1439 2 0.138985406532314 RFvsST 130090446 736689010 606598565 no 554.016906968819 TraesCS7A01G428800 chr7A_622372070 chr7A 622372070 C T C T 3 synonymous_variant LOW transcript non_Triplet 622372049 622373487 1439 2 0.138985406532314 RFvsST 130090446 736689010 606598565 no 554.016906968819 TraesCS7A01G429200 chr7A_623450914 chr7A 623450914 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 623448020 623450434 2415 1 0.041407867494824 RFvsST 130090446 736689010 606598565 no 6.02244069061566 TraesCS7A01G429300 chr7A_623451341 chr7A 623451341 A G A G 3 synonymous_variant LOW transcript unique_Triplet 623451095 623452380 1286 4 0.31104199066874 RFvsST 130090446 736689010 606598565 no 182.153055061267 TraesCS7A01G429300 chr7A_623451133 chr7A 623451133 T C T C 3 missense_variant MODERATE transcript unique_Triplet 623451095 623452380 1286 4 0.31104199066874 RFvsST 130090446 736689010 606598565 no 182.153055061267 TraesCS7A01G429300 chr7A_623451405 chr7A 623451405 A G A G 3 missense_variant MODERATE transcript unique_Triplet 623451095 623452380 1286 4 0.31104199066874 RFvsST 130090446 736689010 606598565 no 182.153055061267 TraesCS7A01G429300 chr7A_623451484 chr7A 623451484 T G T G 3 missense_variant MODERATE transcript unique_Triplet 623451095 623452380 1286 4 0.31104199066874 RFvsST 130090446 736689010 606598565 no 182.153055061267 TraesCS7A01G430000 chr7A_624807456 chr7A 624807456 C T C T 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624807820 chr7A 624807820 G T G T 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808588 chr7A 624808588 T C T C 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808750 chr7A 624808750 G C G C 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624807429 chr7A 624807429 C A C A 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808634 chr7A 624808634 G A G A 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624807819 chr7A 624807819 T C T C 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808318 chr7A 624808318 C T C T 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624807368 chr7A 624807368 C T C T 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808306 chr7A 624808306 C T C T 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624807731 chr7A 624807731 A T A T 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808521 chr7A 624808521 C T C T 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808516 chr7A 624808516 C T C T 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808352 chr7A 624808352 C G C G 3 missense_variant MODERATE transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430000 chr7A_624808333 chr7A 624808333 T C T C 3 synonymous_variant LOW transcript non_Triplet 624807352 624808774 1423 15 1.05411103302881 RFvsST 130090446 736689010 606598565 no 300.48211833239 TraesCS7A01G430400 chr7A_624959396 chr7A 624959396 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 624957705 624958325 621 2 0.322061191626409 RFvsST 130090446 736689010 606598565 no 32.7700154131718 TraesCS7A01G430400 chr7A_624959415 chr7A 624959415 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 624957705 624958325 621 2 0.322061191626409 RFvsST 130090446 736689010 606598565 no 32.7700154131718 TraesCS7A01G430500 chr7A_624960939 chr7A 624960939 G A G A 3 missense_variant MODERATE transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624959958 chr7A 624959958 C G C G 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960245 chr7A 624960245 G A G A 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624959838 chr7A 624959838 G C G C 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960836 chr7A 624960836 A G A G 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624961025 chr7A 624961025 G A G A 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960829 chr7A 624960829 C T C T 3 missense_variant MODERATE transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960528 chr7A 624960528 G A G A 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960950 chr7A 624960950 C G C G 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960303 chr7A 624960303 C T C T 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960544 chr7A 624960544 T C T C 3 missense_variant MODERATE transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960180 chr7A 624960180 G C G C 3 missense_variant MODERATE transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G430500 chr7A_624960938 chr7A 624960938 C G C G 3 synonymous_variant LOW transcript unique_Triplet 624959655 624961254 1600 13 0.8125 RFvsST 130090446 736689010 606598565 no 149.858890918894 TraesCS7A01G431600 chr7A_625639027 chr7A 625639027 C T C T 3 synonymous_variant LOW transcript non_Triplet 625635655 625640991 5337 4 0.0749484729248642 RFvsST 130090446 736689010 606598565 no 946.329341506958 TraesCS7A01G431600 chr7A_625635680 chr7A 625635680 C T C T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 625635655 625640991 5337 4 0.0749484729248642 RFvsST 130090446 736689010 606598565 no 946.329341506958 TraesCS7A01G431600 chr7A_625639252 chr7A 625639252 T C T C 3 synonymous_variant LOW transcript non_Triplet 625635655 625640991 5337 4 0.0749484729248642 RFvsST 130090446 736689010 606598565 no 946.329341506958 TraesCS7A01G431600 chr7A_625640668 chr7A 625640668 A C A C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 625635655 625640991 5337 4 0.0749484729248642 RFvsST 130090446 736689010 606598565 no 946.329341506958 TraesCS7A01G432000 chr7A_625742830 chr7A 625742830 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 625737761 625740656 2896 5 0.172651933701657 RFvsST 130090446 736689010 606598565 no 154.539660908666 TraesCS7A01G432000 chr7A_625738092 chr7A 625738092 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 625737761 625740656 2896 5 0.172651933701657 RFvsST 130090446 736689010 606598565 no 154.539660908666 TraesCS7A01G432000 chr7A_625739619 chr7A 625739619 C C T T 4 missense_variant MODERATE transcript unique_Triplet 625737761 625740656 2896 5 0.172651933701657 RFvsST 130090446 736689010 606598565 no 154.539660908666 TraesCS7A01G432000 chr7A_625738841 chr7A 625738841 A G A G 3 synonymous_variant LOW transcript unique_Triplet 625737761 625740656 2896 5 0.172651933701657 RFvsST 130090446 736689010 606598565 no 154.539660908666 TraesCS7A01G432000 chr7A_625739087 chr7A 625739087 T C T C 3 synonymous_variant LOW transcript unique_Triplet 625737761 625740656 2896 5 0.172651933701657 RFvsST 130090446 736689010 606598565 no 154.539660908666 TraesCS7A01G432100 chr7A_625743035 chr7A 625743035 G C G C 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625744132 chr7A 625744132 A G A G 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625743417 chr7A 625743417 G A G A 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625743466 chr7A 625743466 A G A G 3 missense_variant MODERATE transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625744278 chr7A 625744278 T T C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625743104 chr7A 625743104 G C G C 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625742894 chr7A 625742894 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625743378 chr7A 625743378 G A G A 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625745808 chr7A 625745808 C G C G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G432100 chr7A_625743107 chr7A 625743107 C G C G 3 synonymous_variant LOW transcript unique_Triplet 625742878 625745930 3053 10 0.327546675401245 RFvsST 130090446 736689010 606598565 no 142.101856127067 TraesCS7A01G433600 chr7A_627046317 chr7A 627046317 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 627046060 627046275 216 5 2.31481481481481 RFvsST 130090446 736689010 606598565 no 81.7126944131579 TraesCS7A01G433600 chr7A_627045956 chr7A 627045956 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 627046060 627046275 216 5 2.31481481481481 RFvsST 130090446 736689010 606598565 no 81.7126944131579 TraesCS7A01G433600 chr7A_627047255 chr7A 627047255 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 627046060 627046275 216 5 2.31481481481481 RFvsST 130090446 736689010 606598565 no 81.7126944131579 TraesCS7A01G433600 chr7A_627046610 chr7A 627046610 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 627046060 627046275 216 5 2.31481481481481 RFvsST 130090446 736689010 606598565 no 81.7126944131579 TraesCS7A01G433600 chr7A_627046608 chr7A 627046608 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 627046060 627046275 216 5 2.31481481481481 RFvsST 130090446 736689010 606598565 no 81.7126944131579 TraesCS7A01G434200 chr7A_628007220 chr7A 628007220 G A G A 3 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628007536 chr7A 628007536 G G T T 4 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628012048 chr7A 628012048 C T C T 3 synonymous_variant LOW transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628008356 chr7A 628008356 G A G A 3 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628007225 chr7A 628007225 C T C T 3 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628007439 chr7A 628007439 A G A G 3 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628007382 chr7A 628007382 T T G G 4 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628012019 chr7A 628012019 A A G G 4 missense_variant MODERATE transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434200 chr7A_628008352 chr7A 628008352 T C T C 3 synonymous_variant LOW transcript non_Triplet 628007126 628012165 5040 9 0.178571428571429 RFvsST 130090446 736689010 606598565 no 51.7254403887064 TraesCS7A01G434300 chr7A_628358793 chr7A 628358793 G A G A 3 missense_variant MODERATE transcript unique_Triplet 628358551 628363774 5224 1 0.0191424196018377 RFvsST 130090446 736689010 606598565 no 29.7615182298529 TraesCS7A01G435500 chr7A_628963871 chr7A 628963871 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 628963715 628964551 837 2 0.2389486260454 RFvsST 130090446 736689010 606598565 no 2263.8795275834 TraesCS7A01G435500 chr7A_628964587 chr7A 628964587 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 628963715 628964551 837 2 0.2389486260454 RFvsST 130090446 736689010 606598565 no 2263.8795275834 TraesCS7A01G435700 chr7A_629016692 chr7A 629016692 C G C G 3 missense_variant MODERATE transcript non_Triplet 629013610 629017000 3391 3 0.0884694780300796 RFvsST 130090446 736689010 606598565 no 117.019693488982 TraesCS7A01G435700 chr7A_629016724 chr7A 629016724 C G C G 3 synonymous_variant LOW transcript non_Triplet 629013610 629017000 3391 3 0.0884694780300796 RFvsST 130090446 736689010 606598565 no 117.019693488982 TraesCS7A01G435700 chr7A_629016390 chr7A 629016390 C G C G 3 missense_variant MODERATE transcript non_Triplet 629013610 629017000 3391 3 0.0884694780300796 RFvsST 130090446 736689010 606598565 no 117.019693488982 TraesCS7A01G443100 chr7A_637864028 chr7A 637864028 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 637863933 637865397 1465 1 0.068259385665529 RFvsST 130090446 736689010 606598565 no 64.3273538191684 TraesCS7A01G443500 chr7A_637948683 chr7A 637948683 C A C A 3 missense_variant MODERATE transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443500 chr7A_637949421 chr7A 637949421 G C G C 3 synonymous_variant LOW transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443500 chr7A_637949422 chr7A 637949422 G A G A 3 missense_variant MODERATE transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443500 chr7A_637949391 chr7A 637949391 C T C T 3 synonymous_variant LOW transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443500 chr7A_637949307 chr7A 637949307 G C G C 3 synonymous_variant LOW transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443500 chr7A_637948621 chr7A 637948621 A T A T 3 missense_variant MODERATE transcript unique_Triplet 637948557 637949522 966 6 0.62111801242236 RFvsST 130090446 736689010 606598565 no 298.659411890387 TraesCS7A01G443800 chr7A_638239884 chr7A 638239884 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 638240048 638243643 3596 3 0.0834260289210234 RFvsST 130090446 736689010 606598565 no 31.0241400403611 TraesCS7A01G443800 chr7A_638239906 chr7A 638239906 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 638240048 638243643 3596 3 0.0834260289210234 RFvsST 130090446 736689010 606598565 no 31.0241400403611 TraesCS7A01G443800 chr7A_638240057 chr7A 638240057 G A G A 3 synonymous_variant LOW transcript unique_Triplet 638240048 638243643 3596 3 0.0834260289210234 RFvsST 130090446 736689010 606598565 no 31.0241400403611 TraesCS7A01G444300 chr7A_638710304 chr7A 638710304 G T G T 3 synonymous_variant LOW transcript unique_Triplet 638706646 638710936 4291 2 0.0466091820088557 RFvsST 130090446 736689010 606598565 no 41.1068946374003 TraesCS7A01G444300 chr7A_638710288 chr7A 638710288 G A G A 3 missense_variant MODERATE transcript unique_Triplet 638706646 638710936 4291 2 0.0466091820088557 RFvsST 130090446 736689010 606598565 no 41.1068946374003 TraesCS7A01G446100 chr7A_641016793 chr7A 641016793 C T C T 3 synonymous_variant LOW transcript unique_Triplet 641016479 641017040 562 1 0.177935943060498 RFvsST 130090446 736689010 606598565 no 486.398171137239 TraesCS7A01G446500 chr7A_641401178 chr7A 641401178 A G A G 3 synonymous_variant LOW transcript non_Triplet 641397316 641401217 3902 3 0.0768836494105587 RFvsST 130090446 736689010 606598565 no 61.1243086411871 TraesCS7A01G446500 chr7A_641401445 chr7A 641401445 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 641397316 641401217 3902 3 0.0768836494105587 RFvsST 130090446 736689010 606598565 no 61.1243086411871 TraesCS7A01G446500 chr7A_641399289 chr7A 641399289 T G T G 3 missense_variant MODERATE transcript non_Triplet 641397316 641401217 3902 3 0.0768836494105587 RFvsST 130090446 736689010 606598565 no 61.1243086411871 TraesCS7A01G446800 chr7A_641437347 chr7A 641437347 G A G A 3 synonymous_variant LOW transcript unique_Triplet 641432598 641437444 4847 2 0.041262636682484 RFvsST 130090446 736689010 606598565 no 11.0825989478737 TraesCS7A01G446800 chr7A_641437335 chr7A 641437335 A G A G 3 synonymous_variant LOW transcript unique_Triplet 641432598 641437444 4847 2 0.041262636682484 RFvsST 130090446 736689010 606598565 no 11.0825989478737 TraesCS7A01G447700 chr7A_642254131 chr7A 642254131 G G A A 4 missense_variant MODERATE transcript unique_Triplet 642253424 642254872 1449 1 0.0690131124913734 RFvsST 130090446 736689010 606598565 no 260.205197295204 TraesCS7A01G449600 chr7A_643417170 chr7A 643417170 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 643420422 643422930 2509 2 0.0797130330809087 RFvsST 130090446 736689010 606598565 no 909.521037357693 TraesCS7A01G449600 chr7A_643420413 chr7A 643420413 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 643420422 643422930 2509 2 0.0797130330809087 RFvsST 130090446 736689010 606598565 no 909.521037357693 TraesCS7A01G450600 chr7A_644116367 chr7A 644116367 G G T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 644116319 644118493 2175 1 0.0459770114942529 RFvsST 130090446 736689010 606598565 no 665.665015401386 TraesCS7A01G452300 chr7A_645028871 chr7A 645028871 G G T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 645022927 645029148 6222 2 0.0321440051430408 RFvsST 130090446 736689010 606598565 no 39.8230574037196 TraesCS7A01G452300 chr7A_645029023 chr7A 645029023 C C G G 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 645022927 645029148 6222 2 0.0321440051430408 RFvsST 130090446 736689010 606598565 no 39.8230574037196 TraesCS7A01G452400 chr7A_645035772 chr7A 645035772 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 645038595 645039902 1308 2 0.152905198776758 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G452400 chr7A_645035867 chr7A 645035867 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 645038595 645039902 1308 2 0.152905198776758 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G452500 chr7A_645092162 chr7A 645092162 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 645087867 645090041 2175 1 0.0459770114942529 RFvsST 130090446 736689010 606598565 no 18.8517627706936 TraesCS7A01G453100 chr7A_646956290 chr7A 646956290 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 646956335 646958750 2416 2 0.0827814569536424 RFvsST 130090446 736689010 606598565 no 66.4568769527055 TraesCS7A01G453100 chr7A_646956309 chr7A 646956309 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 646956335 646958750 2416 2 0.0827814569536424 RFvsST 130090446 736689010 606598565 no 66.4568769527055 TraesCS7A01G453200 chr7A_647294897 chr7A 647294897 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 647295921 647298342 2422 2 0.0825763831544178 RFvsST 130090446 736689010 606598565 no 18.9086808921643 TraesCS7A01G453200 chr7A_647297335 chr7A 647297335 G A G A 3 synonymous_variant LOW transcript unique_Triplet 647295921 647298342 2422 2 0.0825763831544178 RFvsST 130090446 736689010 606598565 no 18.9086808921643 TraesCS7A01G453300 chr7A_647308381 chr7A 647308381 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 647305836 647307613 1778 1 0.0562429696287964 RFvsST 130090446 736689010 606598565 no 581.461867712845 TraesCS7A01G453400 chr7A_647861574 chr7A 647861574 A A T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 647861400 647862853 1454 2 0.137551581843191 RFvsST 130090446 736689010 606598565 no 188.323737942561 TraesCS7A01G453400 chr7A_647861577 chr7A 647861577 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 647861400 647862853 1454 2 0.137551581843191 RFvsST 130090446 736689010 606598565 no 188.323737942561 TraesCS7A01G453500 chr7A_647935245 chr7A 647935245 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 647933828 647934662 835 2 0.239520958083832 RFvsST 130090446 736689010 606598565 no 3106.56789312006 TraesCS7A01G453500 chr7A_647934945 chr7A 647934945 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 647933828 647934662 835 2 0.239520958083832 RFvsST 130090446 736689010 606598565 no 3106.56789312006 TraesCS7A01G455200 chr7A_650626952 chr7A 650626952 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 650622627 650628065 5439 1 0.018385732671447 RFvsST 130090446 736689010 606598565 no 5055.9458868727 TraesCS7A01G457100 chr7A_652693872 chr7A 652693872 C T C T 3 missense_variant MODERATE transcript unique_Triplet 652690181 652695231 5051 1 0.0197980597901406 RFvsST 130090446 736689010 606598565 no 109.59938265713 TraesCS7A01G457300 chr7A_652724539 chr7A 652724539 C C G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 652718317 652721975 3659 1 0.0273298715496037 RFvsST 130090446 736689010 606598565 no 5.20632989841519 TraesCS7A01G457400 chr7A_652722902 chr7A 652722902 A A G G 4 synonymous_variant LOW transcript unique_Triplet 652722896 652724527 1632 1 0.0612745098039216 RFvsST 130090446 736689010 606598565 no 19.9035308506396 TraesCS7A01G457500 chr7A_652728248 chr7A 652728248 C C T T 4 synonymous_variant LOW transcript unique_Triplet 652724988 652728296 3309 1 0.0302206104563312 RFvsST 130090446 736689010 606598565 no 43.5929200882544 TraesCS7A01G458600 chr7A_653545517 chr7A 653545517 T T C C 4 missense_variant MODERATE transcript unique_Triplet 653542944 653546404 3461 1 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 32.6243882292437 TraesCS7A01G461100 chr7A_657353731 chr7A 657353731 G G T T 4 synonymous_variant LOW transcript unique_Triplet 657352290 657355966 3677 3 0.081588251291814 RFvsST 130090446 736689010 606598565 no 1093.16181907679 TraesCS7A01G461100 chr7A_657355363 chr7A 657355363 T T G G 4 synonymous_variant LOW transcript unique_Triplet 657352290 657355966 3677 3 0.081588251291814 RFvsST 130090446 736689010 606598565 no 1093.16181907679 TraesCS7A01G461100 chr7A_657352524 chr7A 657352524 C C T T 4 synonymous_variant LOW transcript unique_Triplet 657352290 657355966 3677 3 0.081588251291814 RFvsST 130090446 736689010 606598565 no 1093.16181907679 TraesCS7A01G461500 chr7A_657515620 chr7A 657515620 G G T T 4 synonymous_variant LOW transcript unique_Triplet 657513390 657518310 4921 4 0.0812842918106076 RFvsST 130090446 736689010 606598565 no 28.7227066572905 TraesCS7A01G461500 chr7A_657518235 chr7A 657518235 T T C C 4 synonymous_variant LOW transcript unique_Triplet 657513390 657518310 4921 4 0.0812842918106076 RFvsST 130090446 736689010 606598565 no 28.7227066572905 TraesCS7A01G461500 chr7A_657518346 chr7A 657518346 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 657513390 657518310 4921 4 0.0812842918106076 RFvsST 130090446 736689010 606598565 no 28.7227066572905 TraesCS7A01G461500 chr7A_657515013 chr7A 657515013 T T G G 4 missense_variant MODERATE transcript unique_Triplet 657513390 657518310 4921 4 0.0812842918106076 RFvsST 130090446 736689010 606598565 no 28.7227066572905 TraesCS7A01G461700 chr7A_657717800 chr7A 657717800 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 657716427 657721535 5109 5 0.0978665100802505 RFvsST 130090446 736689010 606598565 no 546.802045434617 TraesCS7A01G461700 chr7A_657718064 chr7A 657718064 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 657716427 657721535 5109 5 0.0978665100802505 RFvsST 130090446 736689010 606598565 no 546.802045434617 TraesCS7A01G461700 chr7A_657716334 chr7A 657716334 G A G A 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 657716427 657721535 5109 5 0.0978665100802505 RFvsST 130090446 736689010 606598565 no 546.802045434617 TraesCS7A01G461700 chr7A_657721559 chr7A 657721559 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 657716427 657721535 5109 5 0.0978665100802505 RFvsST 130090446 736689010 606598565 no 546.802045434617 TraesCS7A01G461700 chr7A_657716287 chr7A 657716287 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 657716427 657721535 5109 5 0.0978665100802505 RFvsST 130090446 736689010 606598565 no 546.802045434617 TraesCS7A01G461800 chr7A_657902304 chr7A 657902304 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 657902193 657906810 4618 1 0.021654395842356 RFvsST 130090446 736689010 606598565 no 90.5204722021055 TraesCS7A01G462700 chr7A_659369839 chr7A 659369839 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 659369864 659370247 384 1 0.260416666666667 RFvsST 130090446 736689010 606598565 no 46.4048849958501 TraesCS7A01G462800 chr7A_659371216 chr7A 659371216 C T C T 3 missense_variant MODERATE transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462800 chr7A_659371015 chr7A 659371015 T T C C 4 missense_variant MODERATE transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462800 chr7A_659374297 chr7A 659374297 G A G A 3 synonymous_variant LOW transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462800 chr7A_659372979 chr7A 659372979 G G A A 4 missense_variant MODERATE transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462800 chr7A_659373372 chr7A 659373372 C C T T 4 missense_variant MODERATE transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462800 chr7A_659371215 chr7A 659371215 C T C T 3 missense_variant MODERATE transcript unique_Triplet 659370816 659374808 3993 6 0.150262960180316 RFvsST 130090446 736689010 606598565 no 88.8424349857046 TraesCS7A01G462900 chr7A_659405196 chr7A 659405196 T T C C 4 missense_variant MODERATE transcript unique_Triplet 659404996 659407509 2514 2 0.0795544948289578 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G462900 chr7A_659407504 chr7A 659407504 G G A A 4 synonymous_variant LOW transcript unique_Triplet 659404996 659407509 2514 2 0.0795544948289578 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G463100 chr7A_659553260 chr7A 659553260 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 659551289 659552633 1345 1 0.0743494423791822 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G463200 chr7A_659553685 chr7A 659553685 G A G A 3 synonymous_variant LOW transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659554440 chr7A 659554440 T T C C 4 synonymous_variant LOW transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659553622 chr7A 659553622 A A G G 4 synonymous_variant LOW transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659555557 chr7A 659555557 G G A A 4 missense_variant MODERATE transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659555214 chr7A 659555214 A A G G 4 synonymous_variant LOW transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659553802 chr7A 659553802 A A G G 4 synonymous_variant LOW transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463200 chr7A_659554468 chr7A 659554468 C C T T 4 missense_variant MODERATE transcript unique_Triplet 659553604 659557303 3700 7 0.189189189189189 RFvsST 130090446 736689010 606598565 no 87.8803783780437 TraesCS7A01G463900 chr7A_660454461 chr7A 660454461 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G463900 chr7A_660454381 chr7A 660454381 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G463900 chr7A_660458577 chr7A 660458577 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G463900 chr7A_660456664 chr7A 660456664 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G463900 chr7A_660455036 chr7A 660455036 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G463900 chr7A_660456113 chr7A 660456113 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 660454316 660459360 5045 6 0.118929633300297 RFvsST 130090446 736689010 606598565 no 270.998290901165 TraesCS7A01G464000 chr7A_660466983 chr7A 660466983 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 660464097 660466878 2782 2 0.0718907260963336 RFvsST 130090446 736689010 606598565 no 26.3620973887597 TraesCS7A01G464000 chr7A_660467218 chr7A 660467218 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 660464097 660466878 2782 2 0.0718907260963336 RFvsST 130090446 736689010 606598565 no 26.3620973887597 TraesCS7A01G464300 chr7A_660550403 chr7A 660550403 A G A G 3 missense_variant MODERATE transcript unique_Triplet 660550267 660554469 4203 2 0.0475850582916964 RFvsST 130090446 736689010 606598565 no 113.591324350937 TraesCS7A01G464300 chr7A_660554443 chr7A 660554443 C T C T 3 synonymous_variant LOW transcript unique_Triplet 660550267 660554469 4203 2 0.0475850582916964 RFvsST 130090446 736689010 606598565 no 113.591324350937 TraesCS7A01G464500 chr7A_661159541 chr7A 661159541 T T C C 4 missense_variant MODERATE transcript non_Triplet 661157134 661159716 2583 5 0.193573364305072 RFvsST 130090446 736689010 606598565 no 30.603001370845 TraesCS7A01G464500 chr7A_661160388 chr7A 661160388 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 661157134 661159716 2583 5 0.193573364305072 RFvsST 130090446 736689010 606598565 no 30.603001370845 TraesCS7A01G464500 chr7A_661161456 chr7A 661161456 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 661157134 661159716 2583 5 0.193573364305072 RFvsST 130090446 736689010 606598565 no 30.603001370845 TraesCS7A01G464500 chr7A_661159733 chr7A 661159733 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 661157134 661159716 2583 5 0.193573364305072 RFvsST 130090446 736689010 606598565 no 30.603001370845 TraesCS7A01G464500 chr7A_661161836 chr7A 661161836 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 661157134 661159716 2583 5 0.193573364305072 RFvsST 130090446 736689010 606598565 no 30.603001370845 TraesCS7A01G464600 chr7A_661165779 chr7A 661165779 T A T A 3 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661166533 chr7A 661166533 C A C A 3 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661165749 chr7A 661165749 T T A A 4 synonymous_variant LOW transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661166744 chr7A 661166744 C C A A 4 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661166834 chr7A 661166834 C C A A 4 stop_gained HIGH transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661168694 chr7A 661168694 C C G G 4 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661166870 chr7A 661166870 A G A G 3 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661169156 chr7A 661169156 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464600 chr7A_661165780 chr7A 661165780 C T C T 3 missense_variant MODERATE transcript non_Triplet 661164633 661169090 4458 9 0.201884253028264 RFvsST 130090446 736689010 606598565 no 282.839631132243 TraesCS7A01G464700 chr7A_661275666 chr7A 661275666 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 661272043 661275653 3611 1 0.027693159789532 RFvsST 130090446 736689010 606598565 no 73.6983121951925 TraesCS7A01G470700 chr7A_666812004 chr7A 666812004 C T C T 3 synonymous_variant LOW transcript unique_Triplet 666807556 666812030 4475 1 0.0223463687150838 RFvsST 130090446 736689010 606598565 no 24.8721738391786 TraesCS7A01G476200 chr7A_670780547 chr7A 670780547 A G A G 3 synonymous_variant LOW transcript non_Triplet 670780416 670781036 621 1 0.161030595813205 RFvsST 130090446 736689010 606598565 no 357.549534772738 TraesCS7A01G476300 chr7A_670800434 chr7A 670800434 T T C C 4 missense_variant MODERATE transcript non_Triplet 670799863 670800483 621 1 0.161030595813205 RFvsST 130090446 736689010 606598565 no 299.189950994285 TraesCS7A01G476400 chr7A_670815113 chr7A 670815113 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 670810143 670811402 1260 2 0.158730158730159 RFvsST 130090446 736689010 606598565 no 9.35867564744721 TraesCS7A01G476400 chr7A_670816337 chr7A 670816337 T C T C,A 3 upstream_gene_variant MODIFIER transcript non_Triplet 670810143 670811402 1260 2 0.158730158730159 RFvsST 130090446 736689010 606598565 no 9.35867564744721 TraesCS7A01G476500 chr7A_670813255 chr7A 670813255 G G A A 4 missense_variant MODERATE transcript non_Triplet 670811786 670813315 1530 2 0.130718954248366 RFvsST 130090446 736689010 606598565 no 15.5509492275088 TraesCS7A01G476500 chr7A_670816791 chr7A 670816791 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 670811786 670813315 1530 2 0.130718954248366 RFvsST 130090446 736689010 606598565 no 15.5509492275088 TraesCS7A01G476700 chr7A_670820900 chr7A 670820900 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 670821700 670825149 3450 2 0.0579710144927536 RFvsST 130090446 736689010 606598565 no 21.1547957065615 TraesCS7A01G476700 chr7A_670820897 chr7A 670820897 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 670821700 670825149 3450 2 0.0579710144927536 RFvsST 130090446 736689010 606598565 no 21.1547957065615 TraesCS7A01G477300 chr7A_670961847 chr7A 670961847 G G A A 4 missense_variant MODERATE transcript unique_Triplet 670959602 670962901 3300 1 0.0303030303030303 RFvsST 130090446 736689010 606598565 no 352.993356683527 TraesCS7A01G478100 chr7A_671417177 chr7A 671417177 A C A C 3 missense_variant MODERATE transcript nonUnique_Triplet 671412684 671417560 4877 2 0.0410088168956326 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G478100 chr7A_671416545 chr7A 671416545 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 671412684 671417560 4877 2 0.0410088168956326 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G478200 chr7A_671420009 chr7A 671420009 A A G G 4 missense_variant MODERATE transcript unique_Triplet 671419872 671420393 522 2 0.383141762452107 RFvsST 130090446 736689010 606598565 no 52.2917406995105 TraesCS7A01G478200 chr7A_671420302 chr7A 671420302 G A G A 3 missense_variant MODERATE transcript unique_Triplet 671419872 671420393 522 2 0.383141762452107 RFvsST 130090446 736689010 606598565 no 52.2917406995105 TraesCS7A01G478600 chr7A_671466934 chr7A 671466934 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671466997 671476176 9180 2 0.0217864923747277 RFvsST 130090446 736689010 606598565 no 259.792998576677 TraesCS7A01G478600 chr7A_671476030 chr7A 671476030 T C T C 3 synonymous_variant LOW transcript unique_Triplet 671466997 671476176 9180 2 0.0217864923747277 RFvsST 130090446 736689010 606598565 no 259.792998576677 TraesCS7A01G479200 chr7A_671925928 chr7A 671925928 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 671926024 671928940 2917 5 0.171408981830648 RFvsST 130090446 736689010 606598565 no 3.16923907554664 TraesCS7A01G479200 chr7A_671928810 chr7A 671928810 G G T T 4 missense_variant MODERATE transcript unique_Triplet 671926024 671928940 2917 5 0.171408981830648 RFvsST 130090446 736689010 606598565 no 3.16923907554664 TraesCS7A01G479200 chr7A_671925985 chr7A 671925985 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 671926024 671928940 2917 5 0.171408981830648 RFvsST 130090446 736689010 606598565 no 3.16923907554664 TraesCS7A01G479200 chr7A_671928770 chr7A 671928770 G G C C 4 synonymous_variant LOW transcript unique_Triplet 671926024 671928940 2917 5 0.171408981830648 RFvsST 130090446 736689010 606598565 no 3.16923907554664 TraesCS7A01G479200 chr7A_671928476 chr7A 671928476 C C T T 4 synonymous_variant LOW transcript unique_Triplet 671926024 671928940 2917 5 0.171408981830648 RFvsST 130090446 736689010 606598565 no 3.16923907554664 TraesCS7A01G479300 chr7A_671937912 chr7A 671937912 C C T T 4 synonymous_variant LOW transcript unique_Triplet 671937328 671938269 942 4 0.424628450106157 RFvsST 130090446 736689010 606598565 no 268.03415136983 TraesCS7A01G479300 chr7A_671937604 chr7A 671937604 T T C C 4 synonymous_variant LOW transcript unique_Triplet 671937328 671938269 942 4 0.424628450106157 RFvsST 130090446 736689010 606598565 no 268.03415136983 TraesCS7A01G479300 chr7A_671937355 chr7A 671937355 A A C C 4 missense_variant MODERATE transcript unique_Triplet 671937328 671938269 942 4 0.424628450106157 RFvsST 130090446 736689010 606598565 no 268.03415136983 TraesCS7A01G479300 chr7A_671937904 chr7A 671937904 G G A A 4 missense_variant MODERATE transcript unique_Triplet 671937328 671938269 942 4 0.424628450106157 RFvsST 130090446 736689010 606598565 no 268.03415136983 TraesCS7A01G479500 chr7A_672011993 chr7A 672011993 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672011956 chr7A 672011956 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672009503 chr7A 672009503 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672013228 chr7A 672013228 A A T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672011843 chr7A 672011843 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672011839 chr7A 672011839 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479500 chr7A_672010540 chr7A 672010540 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 672008531 672008839 309 7 2.26537216828479 RFvsST 130090446 736689010 606598565 no 8.12627868471506 TraesCS7A01G479800 chr7A_672026266 chr7A 672026266 G G T T 4 synonymous_variant LOW transcript non_Triplet 672025160 672029330 4171 5 0.119875329657157 RFvsST 130090446 736689010 606598565 no 95.4665710921715 TraesCS7A01G479800 chr7A_672026259 chr7A 672026259 C C T T 4 missense_variant MODERATE transcript non_Triplet 672025160 672029330 4171 5 0.119875329657157 RFvsST 130090446 736689010 606598565 no 95.4665710921715 TraesCS7A01G479800 chr7A_672025931 chr7A 672025931 G G A A 4 missense_variant MODERATE transcript non_Triplet 672025160 672029330 4171 5 0.119875329657157 RFvsST 130090446 736689010 606598565 no 95.4665710921715 TraesCS7A01G479800 chr7A_672028319 chr7A 672028319 C C T T 4 missense_variant MODERATE transcript non_Triplet 672025160 672029330 4171 5 0.119875329657157 RFvsST 130090446 736689010 606598565 no 95.4665710921715 TraesCS7A01G479800 chr7A_672029097 chr7A 672029097 C C T T 4 missense_variant MODERATE transcript non_Triplet 672025160 672029330 4171 5 0.119875329657157 RFvsST 130090446 736689010 606598565 no 95.4665710921715 TraesCS7A01G480100 chr7A_672074884 chr7A 672074884 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G480100 chr7A_672071554 chr7A 672071554 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G480100 chr7A_672071834 chr7A 672071834 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G480100 chr7A_672071902 chr7A 672071902 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G480100 chr7A_672073914 chr7A 672073914 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G480100 chr7A_672074883 chr7A 672074883 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 672069812 672075700 5889 6 0.101884870096791 RFvsST 130090446 736689010 606598565 no 186.933975651144 TraesCS7A01G481400 chr7A_673778703 chr7A 673778703 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 673779008 673782643 3636 2 0.055005500550055 RFvsST 130090446 736689010 606598565 no 12.071498919559 TraesCS7A01G481400 chr7A_673778656 chr7A 673778656 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 673779008 673782643 3636 2 0.055005500550055 RFvsST 130090446 736689010 606598565 no 12.071498919559 TraesCS7A01G481500 chr7A_674020022 chr7A 674020022 T T C C 4 missense_variant MODERATE transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G481500 chr7A_674020325 chr7A 674020325 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G481500 chr7A_674017947 chr7A 674017947 A A G G 4 intron_variant MODIFIER transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G481500 chr7A_674019055 chr7A 674019055 T T A A 4 intron_variant MODIFIER transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G481500 chr7A_674019191 chr7A 674019191 G G T T 4 intron_variant MODIFIER transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G481500 chr7A_674019951 chr7A 674019951 A A G G 4 synonymous_variant LOW transcript unique_Triplet 674015828 674020140 4313 6 0.139114305587758 RFvsST 130090446 736689010 606598565 no 569.294081998693 TraesCS7A01G482000 chr7A_674272225 chr7A 674272225 G G T T 4 stop_gained HIGH transcript nonUnique_Triplet 674271284 674272287 1004 1 0.099601593625498 RFvsST 130090446 736689010 606598565 no 111.06479918752 TraesCS7A01G482100 chr7A_674276849 chr7A 674276849 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 674273268 674275187 1920 2 0.104166666666667 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G482100 chr7A_674276906 chr7A 674276906 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 674273268 674275187 1920 2 0.104166666666667 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G482200 chr7A_674279667 chr7A 674279667 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 674277099 674280650 3552 2 0.0563063063063063 RFvsST 130090446 736689010 606598565 no 164.646826169377 TraesCS7A01G482200 chr7A_674277105 chr7A 674277105 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 674277099 674280650 3552 2 0.0563063063063063 RFvsST 130090446 736689010 606598565 no 164.646826169377 TraesCS7A01G483100 chr7A_674814577 chr7A 674814577 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 674814370 674816552 2183 1 0.0458085203847916 RFvsST 130090446 736689010 606598565 no 51.9764429147382 TraesCS7A01G483600 chr7A_675113202 chr7A 675113202 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 675113191 675115896 2706 2 0.073909830007391 RFvsST 130090446 736689010 606598565 no 215.080736781206 TraesCS7A01G483600 chr7A_675114461 chr7A 675114461 G G T T 4 missense_variant MODERATE transcript unique_Triplet 675113191 675115896 2706 2 0.073909830007391 RFvsST 130090446 736689010 606598565 no 215.080736781206 TraesCS7A01G483700 chr7A_675227937 chr7A 675227937 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 675227963 675232107 4145 1 0.0241254523522316 RFvsST 130090446 736689010 606598565 no 308.568587203211 TraesCS7A01G490800 chr7A_680188780 chr7A 680188780 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 680188229 680188982 754 1 0.13262599469496 RFvsST 130090446 736689010 606598565 no 34.1830579997639 TraesCS7A01G491200 chr7A_680333925 chr7A 680333925 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 680326956 680333790 6835 1 0.0146305779078274 RFvsST 130090446 736689010 606598565 no 187.088044887261 TraesCS7A01G491300 chr7A_680341781 chr7A 680341781 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 680341323 680345268 3946 5 0.126710593005575 RFvsST 130090446 736689010 606598565 no 130.156634258505 TraesCS7A01G491300 chr7A_680341609 chr7A 680341609 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 680341323 680345268 3946 5 0.126710593005575 RFvsST 130090446 736689010 606598565 no 130.156634258505 TraesCS7A01G491300 chr7A_680341517 chr7A 680341517 T C T C 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 680341323 680345268 3946 5 0.126710593005575 RFvsST 130090446 736689010 606598565 no 130.156634258505 TraesCS7A01G491300 chr7A_680341811 chr7A 680341811 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 680341323 680345268 3946 5 0.126710593005575 RFvsST 130090446 736689010 606598565 no 130.156634258505 TraesCS7A01G491300 chr7A_680341686 chr7A 680341686 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 680341323 680345268 3946 5 0.126710593005575 RFvsST 130090446 736689010 606598565 no 130.156634258505 TraesCS7A01G495900 chr7A_686108816 chr7A 686108816 C T C T 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 686105392 686106264 873 1 0.11454753722795 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G496200 chr7A_686161438 chr7A 686161438 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 686155040 686161956 6917 1 0.0144571345959231 RFvsST 130090446 736689010 606598565 no 54.4080344608388 TraesCS7A01G514600 chr7A_700676957 chr7A 700676957 A A C C 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700676990 chr7A 700676990 C C T T 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700675891 chr7A 700675891 G G A A 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700677264 chr7A 700677264 C C T T 4 synonymous_variant LOW transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700672229 chr7A 700672229 G G A A 4 synonymous_variant LOW transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700676567 chr7A 700676567 C C A A 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700672597 chr7A 700672597 C C T T 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700673107 chr7A 700673107 T T G G 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700675906 chr7A 700675906 C C T T 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514600 chr7A_700672599 chr7A 700672599 T T A A 4 missense_variant MODERATE transcript unique_Triplet 700672086 700677327 5242 10 0.190766882869134 RFvsST 130090446 736689010 606598565 no 296.876580816306 TraesCS7A01G514800 chr7A_700705118 chr7A 700705118 G G C C 4 missense_variant MODERATE transcript non_Triplet 700689375 700706679 17305 5 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 259.756279115544 TraesCS7A01G514800 chr7A_700706862 chr7A 700706862 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 700689375 700706679 17305 5 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 259.756279115544 TraesCS7A01G514800 chr7A_700705500 chr7A 700705500 C C T T 4 missense_variant MODERATE transcript non_Triplet 700689375 700706679 17305 5 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 259.756279115544 TraesCS7A01G514800 chr7A_700705343 chr7A 700705343 A A G G 4 missense_variant MODERATE transcript non_Triplet 700689375 700706679 17305 5 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 259.756279115544 TraesCS7A01G514800 chr7A_700702555 chr7A 700702555 A A T T 4 missense_variant MODERATE transcript non_Triplet 700689375 700706679 17305 5 0.0288933834151979 RFvsST 130090446 736689010 606598565 no 259.756279115544 TraesCS7A01G515000 chr7A_700797323 chr7A 700797323 T T G G 4 missense_variant MODERATE transcript non_Triplet 700795547 700810327 14781 1 0.00676544212164265 RFvsST 130090446 736689010 606598565 no 124.400255930616 TraesCS7A01G517600 chr7A_701634393 chr7A 701634393 G G C C 4 missense_variant MODERATE transcript unique_Triplet 701629639 701635290 5652 1 0.0176928520877565 RFvsST 130090446 736689010 606598565 no 87.025984238193 TraesCS7A01G520800 chr7A_705127000 chr7A 705127000 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 705123692 705126892 3201 1 0.0312402374258044 RFvsST 130090446 736689010 606598565 no 5.52156515750504 TraesCS7A01G521200 chr7A_705227334 chr7A 705227334 A A C C 4 synonymous_variant LOW transcript nonUnique_Triplet 705224158 705228163 4006 2 0.0499251123315027 RFvsST 130090446 736689010 606598565 no 88.5597222551895 TraesCS7A01G521200 chr7A_705227305 chr7A 705227305 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 705224158 705228163 4006 2 0.0499251123315027 RFvsST 130090446 736689010 606598565 no 88.5597222551895 TraesCS7A01G522900 chr7A_705685665 chr7A 705685665 T G T G 3 synonymous_variant LOW transcript unique_Triplet 705684957 705687501 2545 2 0.0785854616895874 RFvsST 130090446 736689010 606598565 no 29.7739165641525 TraesCS7A01G522900 chr7A_705685875 chr7A 705685875 C T C T 3 synonymous_variant LOW transcript unique_Triplet 705684957 705687501 2545 2 0.0785854616895874 RFvsST 130090446 736689010 606598565 no 29.7739165641525 TraesCS7A01G523000 chr7A_705688022 chr7A 705688022 G T G T 3 missense_variant MODERATE transcript unique_Triplet 705687958 705690866 2909 1 0.0343760742523204 RFvsST 130090446 736689010 606598565 no 420.844525408633 TraesCS7A01G524600 chr7A_706911944 chr7A 706911944 G C G C 3 missense_variant MODERATE transcript unique_Triplet 706905993 706912066 6074 1 0.016463615409944 RFvsST 130090446 736689010 606598565 no 720.251194771158 TraesCS7A01G525900 chr7A_708146920 chr7A 708146920 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 708139066 708146427 7362 5 0.0679163270850312 RFvsST 130090446 736689010 606598565 no 672.996722945466 TraesCS7A01G525900 chr7A_708139129 chr7A 708139129 T C T C 3 synonymous_variant LOW transcript unique_Triplet 708139066 708146427 7362 5 0.0679163270850312 RFvsST 130090446 736689010 606598565 no 672.996722945466 TraesCS7A01G525900 chr7A_708146378 chr7A 708146378 A G A G 3 missense_variant MODERATE transcript unique_Triplet 708139066 708146427 7362 5 0.0679163270850312 RFvsST 130090446 736689010 606598565 no 672.996722945466 TraesCS7A01G525900 chr7A_708143347 chr7A 708143347 T C T C 3 missense_variant MODERATE transcript unique_Triplet 708139066 708146427 7362 5 0.0679163270850312 RFvsST 130090446 736689010 606598565 no 672.996722945466 TraesCS7A01G525900 chr7A_708143282 chr7A 708143282 C A C A 3 missense_variant MODERATE transcript unique_Triplet 708139066 708146427 7362 5 0.0679163270850312 RFvsST 130090446 736689010 606598565 no 672.996722945466 TraesCS7A01G527600 chr7A_708624800 chr7A 708624800 A A C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 708624805 708625218 414 1 0.241545893719807 RFvsST 130090446 736689010 606598565 no 290.171968093884 TraesCS7A01G528700 chr7A_708913385 chr7A 708913385 C T C T 3 missense_variant MODERATE transcript unique_Triplet 708913267 708919696 6430 1 0.015552099533437 RFvsST 130090446 736689010 606598565 no 185.375146548372 TraesCS7A01G528900 chr7A_709122284 chr7A 709122284 G G A A 4 missense_variant MODERATE transcript non_Triplet 709121834 709122517 684 2 0.292397660818713 RFvsST 130090446 736689010 606598565 no 1965.39956127938 TraesCS7A01G528900 chr7A_709122285 chr7A 709122285 G G A A 4 missense_variant MODERATE transcript non_Triplet 709121834 709122517 684 2 0.292397660818713 RFvsST 130090446 736689010 606598565 no 1965.39956127938 TraesCS7A01G533400 chr7A_711944572 chr7A 711944572 T T C C 4 synonymous_variant LOW transcript unique_Triplet 711944085 711947490 3406 2 0.0587199060481503 RFvsST 130090446 736689010 606598565 no 63.4626187621993 TraesCS7A01G533400 chr7A_711944243 chr7A 711944243 C C G G 4 missense_variant MODERATE transcript unique_Triplet 711944085 711947490 3406 2 0.0587199060481503 RFvsST 130090446 736689010 606598565 no 63.4626187621993 TraesCS7A01G534400 chr7A_712419534 chr7A 712419534 C C G G 4 missense_variant MODERATE transcript unique_Triplet 712417104 712420221 3118 1 0.032071840923669 RFvsST 130090446 736689010 606598565 no 83.7283459089407 TraesCS7A01G536900 chr7A_714340481 chr7A 714340481 G C G C 3 upstream_gene_variant MODIFIER transcript non_Triplet 714340482 714342889 2408 2 0.0830564784053156 RFvsST 130090446 736689010 606598565 no 450.795502942133 TraesCS7A01G536900 chr7A_714342643 chr7A 714342643 C T C T 3 synonymous_variant LOW transcript non_Triplet 714340482 714342889 2408 2 0.0830564784053156 RFvsST 130090446 736689010 606598565 no 450.795502942133 TraesCS7A01G537000 chr7A_714599803 chr7A 714599803 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 714595366 714597935 2570 3 0.116731517509728 RFvsST 130090446 736689010 606598565 no 402.783097598925 TraesCS7A01G537000 chr7A_714595137 chr7A 714595137 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 714595366 714597935 2570 3 0.116731517509728 RFvsST 130090446 736689010 606598565 no 402.783097598925 TraesCS7A01G537000 chr7A_714595105 chr7A 714595105 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 714595366 714597935 2570 3 0.116731517509728 RFvsST 130090446 736689010 606598565 no 402.783097598925 TraesCS7A01G537100 chr7A_714617035 chr7A 714617035 C A C A 3 synonymous_variant LOW transcript unique_Triplet 714616587 714618040 1454 2 0.137551581843191 RFvsST 130090446 736689010 606598565 no 369.066546636754 TraesCS7A01G537100 chr7A_714617249 chr7A 714617249 C T C T 3 missense_variant MODERATE transcript unique_Triplet 714616587 714618040 1454 2 0.137551581843191 RFvsST 130090446 736689010 606598565 no 369.066546636754 TraesCS7A01G537300 chr7A_714672582 chr7A 714672582 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 714672781 714677915 5135 1 0.0194741966893866 RFvsST 130090446 736689010 606598565 no 1224.1743647403 TraesCS7A01G538600 chr7A_715692976 chr7A 715692976 A G A G 3 synonymous_variant LOW transcript non_Triplet 715692171 715700894 8724 4 0.0458505272810637 RFvsST 130090446 736689010 606598565 no 81.416883416078 TraesCS7A01G538600 chr7A_715701383 chr7A 715701383 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 715692171 715700894 8724 4 0.0458505272810637 RFvsST 130090446 736689010 606598565 no 81.416883416078 TraesCS7A01G538600 chr7A_715694198 chr7A 715694198 A T A T 3 synonymous_variant LOW transcript non_Triplet 715692171 715700894 8724 4 0.0458505272810637 RFvsST 130090446 736689010 606598565 no 81.416883416078 TraesCS7A01G538600 chr7A_715692434 chr7A 715692434 C T C T 3 synonymous_variant LOW transcript non_Triplet 715692171 715700894 8724 4 0.0458505272810637 RFvsST 130090446 736689010 606598565 no 81.416883416078 TraesCS7A01G539100 chr7A_716247692 chr7A 716247692 A G A G 3 synonymous_variant LOW transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716246639 chr7A 716246639 C T C T 3 synonymous_variant LOW transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716246591 chr7A 716246591 A C A C 3 synonymous_variant LOW transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716246917 chr7A 716246917 G A G A 3 synonymous_variant LOW transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716247671 chr7A 716247671 C T C T 3 synonymous_variant LOW transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716246397 chr7A 716246397 C G C G 3 missense_variant MODERATE transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716248295 chr7A 716248295 G A G A 3 missense_variant MODERATE transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539100 chr7A_716246651 chr7A 716246651 G C G C 3 missense_variant MODERATE transcript non_Triplet 716246289 716248320 2032 8 0.393700787401575 RFvsST 130090446 736689010 606598565 no 34.1951327812834 TraesCS7A01G539800 chr7A_717036767 chr7A 717036767 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717037357 chr7A 717037357 G A G A 3 synonymous_variant LOW transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717041121 chr7A 717041121 T C T C 3 missense_variant MODERATE transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717036859 chr7A 717036859 A T A T 3 missense_variant MODERATE transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717039889 chr7A 717039889 T A T A 3 missense_variant MODERATE transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717036664 chr7A 717036664 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717040985 chr7A 717040985 T C T C 3 missense_variant MODERATE transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717042409 chr7A 717042409 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G539800 chr7A_717040001 chr7A 717040001 T C T C 3 missense_variant MODERATE transcript unique_Triplet 717036531 717042712 6182 9 0.145583953413135 RFvsST 130090446 736689010 606598565 no 198.080201503896 TraesCS7A01G540000 chr7A_717089688 chr7A 717089688 G A G A 3 missense_variant MODERATE transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717090370 chr7A 717090370 G A G A 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717091917 chr7A 717091917 A G A G 3 missense_variant MODERATE transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717091424 chr7A 717091424 C G C G 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717091586 chr7A 717091586 C T C T 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717090190 chr7A 717090190 A G A G 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717092549 chr7A 717092549 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717091886 chr7A 717091886 C T C T 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717091423 chr7A 717091423 C T C T 3 missense_variant MODERATE transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717089467 chr7A 717089467 C T C T 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717092314 chr7A 717092314 A G A G 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540000 chr7A_717089485 chr7A 717089485 C T C T 3 synonymous_variant LOW transcript unique_Triplet 717080943 717092746 11804 12 0.101660454083362 RFvsST 130090446 736689010 606598565 no 1047.68923866121 TraesCS7A01G540400 chr7A_717389530 chr7A 717389530 G A G A 3 missense_variant MODERATE transcript non_Triplet 717388824 717394340 5517 4 0.0725031720137756 RFvsST 130090446 736689010 606598565 no 5.10358428009486 TraesCS7A01G540400 chr7A_717388871 chr7A 717388871 G A G A 3 synonymous_variant LOW transcript non_Triplet 717388824 717394340 5517 4 0.0725031720137756 RFvsST 130090446 736689010 606598565 no 5.10358428009486 TraesCS7A01G540400 chr7A_717389534 chr7A 717389534 C A C A 3 missense_variant MODERATE transcript non_Triplet 717388824 717394340 5517 4 0.0725031720137756 RFvsST 130090446 736689010 606598565 no 5.10358428009486 TraesCS7A01G540400 chr7A_717388886 chr7A 717388886 T C T C 3 synonymous_variant LOW transcript non_Triplet 717388824 717394340 5517 4 0.0725031720137756 RFvsST 130090446 736689010 606598565 no 5.10358428009486 TraesCS7A01G542900 chr7A_719571202 chr7A 719571202 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 719567132 719570236 3105 2 0.0644122383252818 RFvsST 130090446 736689010 606598565 no 54.9680811832421 TraesCS7A01G542900 chr7A_719567282 chr7A 719567282 T C T C 3 synonymous_variant LOW transcript unique_Triplet 719567132 719570236 3105 2 0.0644122383252818 RFvsST 130090446 736689010 606598565 no 54.9680811832421 TraesCS7A01G549000 chr7A_723255225 chr7A 723255225 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 723255289 723256370 1082 3 0.277264325323475 RFvsST 130090446 736689010 606598565 no 331.657502684096 TraesCS7A01G549000 chr7A_723255282 chr7A 723255282 C G C G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 723255289 723256370 1082 3 0.277264325323475 RFvsST 130090446 736689010 606598565 no 331.657502684096 TraesCS7A01G549000 chr7A_723255891 chr7A 723255891 C T C T 3 missense_variant MODERATE transcript nonUnique_Triplet 723255289 723256370 1082 3 0.277264325323475 RFvsST 130090446 736689010 606598565 no 331.657502684096 TraesCS7A01G549300 chr7A_723295818 chr7A 723295818 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 723283407 723293490 10084 1 0.00991669972233241 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G549400 chr7A_723298684 chr7A 723298684 A G A G 3 synonymous_variant LOW transcript unique_Triplet 723295898 723298995 3098 5 0.161394448030988 RFvsST 130090446 736689010 606598565 no 80.8000188710709 TraesCS7A01G549400 chr7A_723299220 chr7A 723299220 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 723295898 723298995 3098 5 0.161394448030988 RFvsST 130090446 736689010 606598565 no 80.8000188710709 TraesCS7A01G549400 chr7A_723298690 chr7A 723298690 G A G A 3 synonymous_variant LOW transcript unique_Triplet 723295898 723298995 3098 5 0.161394448030988 RFvsST 130090446 736689010 606598565 no 80.8000188710709 TraesCS7A01G549400 chr7A_723295979 chr7A 723295979 A G A G 3 synonymous_variant LOW transcript unique_Triplet 723295898 723298995 3098 5 0.161394448030988 RFvsST 130090446 736689010 606598565 no 80.8000188710709 TraesCS7A01G549400 chr7A_723299232 chr7A 723299232 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 723295898 723298995 3098 5 0.161394448030988 RFvsST 130090446 736689010 606598565 no 80.8000188710709 TraesCS7A01G549800 chr7A_724086098 chr7A 724086098 C T C T 3 missense_variant MODERATE transcript non_Triplet 724082618 724090076 7459 4 0.0536264914867945 RFvsST 130090446 736689010 606598565 no 321.105761034399 TraesCS7A01G549800 chr7A_724085686 chr7A 724085686 A A G G 4 synonymous_variant LOW transcript non_Triplet 724082618 724090076 7459 4 0.0536264914867945 RFvsST 130090446 736689010 606598565 no 321.105761034399 TraesCS7A01G549800 chr7A_724084803 chr7A 724084803 A A G G 4 synonymous_variant LOW transcript non_Triplet 724082618 724090076 7459 4 0.0536264914867945 RFvsST 130090446 736689010 606598565 no 321.105761034399 TraesCS7A01G549800 chr7A_724085169 chr7A 724085169 C C A A 4 synonymous_variant LOW transcript non_Triplet 724082618 724090076 7459 4 0.0536264914867945 RFvsST 130090446 736689010 606598565 no 321.105761034399 TraesCS7A01G550200 chr7A_724134769 chr7A 724134769 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 724128009 724131025 3017 2 0.0662910175671197 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G550200 chr7A_724134844 chr7A 724134844 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 724128009 724131025 3017 2 0.0662910175671197 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G550300 chr7A_724137134 chr7A 724137134 G G A A 4 synonymous_variant LOW transcript non_Triplet 724134885 724138279 3395 1 0.0294550810014728 RFvsST 130090446 736689010 606598565 no 203.096836818017 TraesCS7A01G550900 chr7A_724653585 chr7A 724653585 A A G G 4 synonymous_variant LOW transcript non_Triplet 724652926 724654665 1740 2 0.114942528735632 RFvsST 130090446 736689010 606598565 no 747.886975293301 TraesCS7A01G550900 chr7A_724653154 chr7A 724653154 C C T T 4 missense_variant MODERATE transcript non_Triplet 724652926 724654665 1740 2 0.114942528735632 RFvsST 130090446 736689010 606598565 no 747.886975293301 TraesCS7A01G557700 chr7A_730433115 chr7A 730433115 A A G G 4 synonymous_variant LOW transcript unique_Triplet 730430976 730434251 3276 3 0.0915750915750916 RFvsST 130090446 736689010 606598565 no 1133.08945154366 TraesCS7A01G557700 chr7A_730431726 chr7A 730431726 A A G G 4 synonymous_variant LOW transcript unique_Triplet 730430976 730434251 3276 3 0.0915750915750916 RFvsST 130090446 736689010 606598565 no 1133.08945154366 TraesCS7A01G557700 chr7A_730433729 chr7A 730433729 A A C C 4 missense_variant MODERATE transcript unique_Triplet 730430976 730434251 3276 3 0.0915750915750916 RFvsST 130090446 736689010 606598565 no 1133.08945154366 TraesCS7A01G558200 chr7A_730713996 chr7A 730713996 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730715038 chr7A 730715038 C T C T 3 splice_region_variant LOW transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730715534 chr7A 730715534 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730715073 chr7A 730715073 A G A G 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730713949 chr7A 730713949 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730714691 chr7A 730714691 G T G T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730714577 chr7A 730714577 G T G T 3 synonymous_variant LOW transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730714578 chr7A 730714578 G T G T 3 synonymous_variant LOW transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558200 chr7A_730714641 chr7A 730714641 G A G A 3 synonymous_variant LOW transcript unique_Triplet 730713899 730715787 1889 9 0.476442562202223 RFvsST 130090446 736689010 606598565 no 481.746246545825 TraesCS7A01G558500 chr7A_730749776 chr7A 730749776 G T G T 3 missense_variant MODERATE transcript unique_Triplet 730749388 730749909 522 1 0.191570881226054 RFvsST 130090446 736689010 606598565 no 98.8018109136395 TraesCS7A01G559300 chr7A_731266797 chr7A 731266797 G T G T 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731268039 chr7A 731268039 G C G C 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731268422 chr7A 731268422 C T C T 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731269587 chr7A 731269587 G A G A 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731269292 chr7A 731269292 A G A G 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731267521 chr7A 731267521 A G A G 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270384 chr7A 731270384 G C G C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270365 chr7A 731270365 T C T C 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731269479 chr7A 731269479 T C T C 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731268950 chr7A 731268950 G A G A 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270497 chr7A 731270497 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731268939 chr7A 731268939 G A G A 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731267217 chr7A 731267217 C A C A 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270350 chr7A 731270350 G T G T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731267859 chr7A 731267859 C T C T 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731268021 chr7A 731268021 C T C T 3 synonymous_variant LOW transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270573 chr7A 731270573 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731270605 chr7A 731270605 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731267923 chr7A 731267923 G A G A 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G559300 chr7A_731267900 chr7A 731267900 C T C T 3 missense_variant MODERATE transcript unique_Triplet 731263784 731273232 9449 20 0.211662609799979 RFvsST 130090446 736689010 606598565 no 1012.28570762254 TraesCS7A01G560000 chr7A_731882578 chr7A 731882578 C G C G 3 missense_variant MODERATE transcript unique_Triplet 731882428 731882883 456 3 0.657894736842105 RFvsST 130090446 736689010 606598565 no 46.7841217822846 TraesCS7A01G560000 chr7A_731882556 chr7A 731882556 A G A G 3 synonymous_variant LOW transcript unique_Triplet 731882428 731882883 456 3 0.657894736842105 RFvsST 130090446 736689010 606598565 no 46.7841217822846 TraesCS7A01G560000 chr7A_731882715 chr7A 731882715 G C G C 3 synonymous_variant LOW transcript unique_Triplet 731882428 731882883 456 3 0.657894736842105 RFvsST 130090446 736689010 606598565 no 46.7841217822846 TraesCS7A01G560100 chr7A_731962472 chr7A 731962472 C T C T 3 synonymous_variant LOW transcript unique_Triplet 731962425 731965508 3084 1 0.0324254215304799 RFvsST 130090446 736689010 606598565 no 58.4089633687638 TraesCS7A01G560200 chr7A_732055199 chr7A 732055199 G C G C 3 synonymous_variant LOW transcript unique_Triplet 732052976 732055345 2370 3 0.126582278481013 RFvsST 130090446 736689010 606598565 no 505.729402554002 TraesCS7A01G560200 chr7A_732054473 chr7A 732054473 A C A C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 732052976 732055345 2370 3 0.126582278481013 RFvsST 130090446 736689010 606598565 no 505.729402554002 TraesCS7A01G560200 chr7A_732055194 chr7A 732055194 A G A G 3 missense_variant MODERATE transcript unique_Triplet 732052976 732055345 2370 3 0.126582278481013 RFvsST 130090446 736689010 606598565 no 505.729402554002 TraesCS7A01G560400 chr7A_732087628 chr7A 732087628 G C G C 3 missense_variant MODERATE transcript unique_Triplet 732087519 732089709 2191 5 0.228206298493838 RFvsST 130090446 736689010 606598565 no 162.996434351295 TraesCS7A01G560400 chr7A_732087371 chr7A 732087371 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 732087519 732089709 2191 5 0.228206298493838 RFvsST 130090446 736689010 606598565 no 162.996434351295 TraesCS7A01G560400 chr7A_732089601 chr7A 732089601 G A G A 3 missense_variant MODERATE transcript unique_Triplet 732087519 732089709 2191 5 0.228206298493838 RFvsST 130090446 736689010 606598565 no 162.996434351295 TraesCS7A01G560400 chr7A_732087366 chr7A 732087366 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 732087519 732089709 2191 5 0.228206298493838 RFvsST 130090446 736689010 606598565 no 162.996434351295 TraesCS7A01G560400 chr7A_732089838 chr7A 732089838 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 732087519 732089709 2191 5 0.228206298493838 RFvsST 130090446 736689010 606598565 no 162.996434351295 TraesCS7A01G561500 chr7A_732597840 chr7A 732597840 C G C G 3 missense_variant MODERATE transcript unique_Triplet 732596946 732602222 5277 2 0.0379003221527383 RFvsST 130090446 736689010 606598565 no 52.7631477265396 TraesCS7A01G561500 chr7A_732602446 chr7A 732602446 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 732596946 732602222 5277 2 0.0379003221527383 RFvsST 130090446 736689010 606598565 no 52.7631477265396 TraesCS7A01G561600 chr7A_732799448 chr7A 732799448 A C A C 3 synonymous_variant LOW transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732799449 chr7A 732799449 C G C G 3 missense_variant MODERATE transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732799397 chr7A 732799397 C T C T 3 synonymous_variant LOW transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732799266 chr7A 732799266 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732798229 chr7A 732798229 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732798235 chr7A 732798235 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G561600 chr7A_732799442 chr7A 732799442 A C A C 3 missense_variant MODERATE transcript unique_Triplet 732799335 732801417 2083 7 0.336053768602976 RFvsST 130090446 736689010 606598565 no 301.146197230057 TraesCS7A01G562600 chr7A_733329359 chr7A 733329359 G A G A 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733330547 chr7A 733330547 T C T C 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733329314 chr7A 733329314 C T C T 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733329277 chr7A 733329277 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733330540 chr7A 733330540 A G A G 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733331758 chr7A 733331758 G A G A 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733333579 chr7A 733333579 A G A G 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733329910 chr7A 733329910 A G A G 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562600 chr7A_733330361 chr7A 733330361 A G A G 3 synonymous_variant LOW transcript unique_Triplet 733329296 733335063 5768 9 0.156033287101248 RFvsST 130090446 736689010 606598565 no 189.53357039292 TraesCS7A01G562700 chr7A_733339468 chr7A 733339468 G A G A 3 synonymous_variant LOW transcript unique_Triplet 733337850 733339850 2001 2 0.0999500249875062 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G562700 chr7A_733338694 chr7A 733338694 A T A T 3 missense_variant MODERATE transcript unique_Triplet 733337850 733339850 2001 2 0.0999500249875062 RFvsST 130090446 736689010 606598565 no No_match TraesCS7A01G563600 chr7A_733571689 chr7A 733571689 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 733569904 733571662 1759 3 0.170551449687322 RFvsST 130090446 736689010 606598565 no 38.2072168906017 TraesCS7A01G563600 chr7A_733571479 chr7A 733571479 G G A A 4 synonymous_variant LOW transcript non_Triplet 733569904 733571662 1759 3 0.170551449687322 RFvsST 130090446 736689010 606598565 no 38.2072168906017 TraesCS7A01G563600 chr7A_733571611 chr7A 733571611 T T C C 4 synonymous_variant LOW transcript non_Triplet 733569904 733571662 1759 3 0.170551449687322 RFvsST 130090446 736689010 606598565 no 38.2072168906017 TraesCS7A01G564300 chr7A_733812793 chr7A 733812793 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733818928 chr7A 733818928 G G C C 4 synonymous_variant LOW transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733814671 chr7A 733814671 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733818947 chr7A 733818947 G A G A 3 missense_variant MODERATE transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733812832 chr7A 733812832 G T G T 3 upstream_gene_variant MODIFIER transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733820154 chr7A 733820154 C T C T 3 synonymous_variant LOW transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733819075 chr7A 733819075 G A G A 3 synonymous_variant LOW transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G564300 chr7A_733818952 chr7A 733818952 T T C C 4 synonymous_variant LOW transcript non_Triplet 733817688 733820487 2800 8 0.285714285714286 RFvsST 130090446 736689010 606598565 no 203.330268407606 TraesCS7A01G566000 chr7A_735414488 chr7A 735414488 C T C T 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735406435 chr7A 735406435 G C G C 3 synonymous_variant LOW transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735405480 chr7A 735405480 G T G T 3 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735417093 chr7A 735417093 T A T A 3 synonymous_variant LOW transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735413911 chr7A 735413911 G T G T 3 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735419330 chr7A 735419330 A A C C 4 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735419150 chr7A 735419150 G A G A 3 synonymous_variant LOW transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735414732 chr7A 735414732 C C T T 4 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735407403 chr7A 735407403 T T A A 4 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735419724 chr7A 735419724 C C G G 4 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735419145 chr7A 735419145 G A G A 3 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735413457 chr7A 735413457 A G A G 3 missense_variant MODERATE transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566000 chr7A_735417216 chr7A 735417216 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 735404983 735420477 15495 13 0.0838980316231042 RFvsST 130090446 736689010 606598565 no 220.247872855831 TraesCS7A01G566500 chr7A_735782773 chr7A 735782773 C T C T 3 synonymous_variant LOW transcript non_Triplet 735782216 735785950 3735 1 0.0267737617135207 RFvsST 130090446 736689010 606598565 no 40.1758705662159 TraesCS7A01G568900 chr7A_736435272 chr7A 736435272 G C G C 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736437505 chr7A 736437505 T C T C 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736434517 chr7A 736434517 C G C G 3 missense_variant MODERATE transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736437324 chr7A 736437324 A G A G 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736435006 chr7A 736435006 A G A G 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736437514 chr7A 736437514 A G A G 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736436701 chr7A 736436701 A G A G 3 synonymous_variant LOW transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736437994 chr7A 736437994 A C A C 3 missense_variant MODERATE transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736434321 chr7A 736434321 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G568900 chr7A_736438118 chr7A 736438118 A T A T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 736434040 736438207 4168 10 0.239923224568138 RFvsST 130090446 736689010 606598565 no 202.949960480199 TraesCS7A01G569600 chr7A_736563363 chr7A 736563363 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736553705 736559137 5433 5 0.0920301859009755 RFvsST 130090446 736689010 606598565 no 38.660921197751 TraesCS7A01G569600 chr7A_736560910 chr7A 736560910 C A C A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736553705 736559137 5433 5 0.0920301859009755 RFvsST 130090446 736689010 606598565 no 38.660921197751 TraesCS7A01G569600 chr7A_736554999 chr7A 736554999 G A G A 3 synonymous_variant LOW transcript unique_Triplet 736553705 736559137 5433 5 0.0920301859009755 RFvsST 130090446 736689010 606598565 no 38.660921197751 TraesCS7A01G569600 chr7A_736562852 chr7A 736562852 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736553705 736559137 5433 5 0.0920301859009755 RFvsST 130090446 736689010 606598565 no 38.660921197751 TraesCS7A01G569600 chr7A_736562878 chr7A 736562878 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736553705 736559137 5433 5 0.0920301859009755 RFvsST 130090446 736689010 606598565 no 38.660921197751 TraesCS7A01G569700 chr7A_736564856 chr7A 736564856 T G T G 3 synonymous_variant LOW transcript unique_Triplet 736563157 736565107 1951 5 0.256278831368529 RFvsST 130090446 736689010 606598565 no 38.6669296336996 TraesCS7A01G569700 chr7A_736564919 chr7A 736564919 A G A G 3 synonymous_variant LOW transcript unique_Triplet 736563157 736565107 1951 5 0.256278831368529 RFvsST 130090446 736689010 606598565 no 38.6669296336996 TraesCS7A01G569700 chr7A_736564389 chr7A 736564389 T C T C 3 synonymous_variant LOW transcript unique_Triplet 736563157 736565107 1951 5 0.256278831368529 RFvsST 130090446 736689010 606598565 no 38.6669296336996 TraesCS7A01G569700 chr7A_736565534 chr7A 736565534 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736563157 736565107 1951 5 0.256278831368529 RFvsST 130090446 736689010 606598565 no 38.6669296336996 TraesCS7A01G569700 chr7A_736565749 chr7A 736565749 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 736563157 736565107 1951 5 0.256278831368529 RFvsST 130090446 736689010 606598565 no 38.6669296336996 TraesCS7B01G002300 chr7B_889333 chr7B 889333 A G A G 3 missense_variant MODERATE transcript non_Triplet 882348 891020 8673 2 0.0230600714862216 RFvsST 33435 123655576 123622142 no 177.749051496493 TraesCS7B01G002300 chr7B_890067 chr7B 890067 G A G A 3 synonymous_variant LOW transcript non_Triplet 882348 891020 8673 2 0.0230600714862216 RFvsST 33435 123655576 123622142 no 177.749051496493 TraesCS7B01G002900 chr7B_1205259 chr7B 1205259 T A T A 3 missense_variant MODERATE transcript non_Triplet 1203205 1208405 5201 2 0.038454143433955 RFvsST 33435 123655576 123622142 no 65.1084229704693 TraesCS7B01G002900 chr7B_1205252 chr7B 1205252 A G A G 3 synonymous_variant LOW transcript non_Triplet 1203205 1208405 5201 2 0.038454143433955 RFvsST 33435 123655576 123622142 no 65.1084229704693 TraesCS7B01G004900 chr7B_2786931 chr7B 2786931 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 2784399 2786183 1785 1 0.0560224089635854 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G005000 chr7B_2789345 chr7B 2789345 A A G G 4 synonymous_variant LOW transcript unique_Triplet 2786932 2791262 4331 1 0.023089355806973 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G005700 chr7B_3145962 chr7B 3145962 C C G G 4 missense_variant MODERATE transcript unique_Triplet 3142605 3150879 8275 2 0.0241691842900302 RFvsST 33435 123655576 123622142 no 18.8649570963869 TraesCS7B01G005700 chr7B_3148128 chr7B 3148128 C C T T 4 missense_variant MODERATE transcript unique_Triplet 3142605 3150879 8275 2 0.0241691842900302 RFvsST 33435 123655576 123622142 no 18.8649570963869 TraesCS7B01G006400 chr7B_3689322 chr7B 3689322 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 3684377 3689061 4685 1 0.0213447171824973 RFvsST 33435 123655576 123622142 no 464.353100160255 TraesCS7B01G008100 chr7B_4908132 chr7B 4908132 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 4901647 4904111 2465 2 0.0811359026369168 RFvsST 33435 123655576 123622142 no 225.242881351798 TraesCS7B01G008100 chr7B_4908566 chr7B 4908566 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 4901647 4904111 2465 2 0.0811359026369168 RFvsST 33435 123655576 123622142 no 225.242881351798 TraesCS7B01G008200 chr7B_4908857 chr7B 4908857 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4909045 chr7B 4909045 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4908972 chr7B 4908972 T T C C 4 missense_variant MODERATE transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4911215 chr7B 4911215 A T A T 3 missense_variant MODERATE transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4909048 chr7B 4909048 G T G T 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4908767 chr7B 4908767 C G C G 3 missense_variant MODERATE transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4908830 chr7B 4908830 C A C A 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4908575 chr7B 4908575 A G A G 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4911233 chr7B 4911233 C T C T 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4908803 chr7B 4908803 G A G A 3 synonymous_variant LOW transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4910207 chr7B 4910207 C G C G 3 missense_variant MODERATE transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008200 chr7B_4910594 chr7B 4910594 G A G A 3 missense_variant MODERATE transcript unique_Triplet 4908570 4911804 3235 12 0.370942812982998 RFvsST 33435 123655576 123622142 no 46.093907641533 TraesCS7B01G008300 chr7B_5058705 chr7B 5058705 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 5054758 5058659 3902 2 0.0512557662737058 RFvsST 33435 123655576 123622142 no 9.97789289897336 TraesCS7B01G008300 chr7B_5058709 chr7B 5058709 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 5054758 5058659 3902 2 0.0512557662737058 RFvsST 33435 123655576 123622142 no 9.97789289897336 TraesCS7B01G008400 chr7B_5056504 chr7B 5056504 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 5059012 5061174 2163 1 0.0462320850670365 RFvsST 33435 123655576 123622142 no 126.550561767649 TraesCS7B01G009300 chr7B_5916047 chr7B 5916047 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 5919723 5923082 3360 3 0.0892857142857143 RFvsST 33435 123655576 123622142 no 67.3995939740726 TraesCS7B01G009300 chr7B_5923044 chr7B 5923044 T T C C 4 missense_variant MODERATE transcript unique_Triplet 5919723 5923082 3360 3 0.0892857142857143 RFvsST 33435 123655576 123622142 no 67.3995939740726 TraesCS7B01G009300 chr7B_5923117 chr7B 5923117 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 5919723 5923082 3360 3 0.0892857142857143 RFvsST 33435 123655576 123622142 no 67.3995939740726 TraesCS7B01G010100 chr7B_6180096 chr7B 6180096 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 6177469 6179979 2511 1 0.0398247710075667 RFvsST 33435 123655576 123622142 no 82.5022027865759 TraesCS7B01G013200 chr7B_9753177 chr7B 9753177 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 9750728 9753050 2323 5 0.215238915195867 RFvsST 33435 123655576 123622142 no 384.669313990993 TraesCS7B01G013200 chr7B_9753175 chr7B 9753175 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 9750728 9753050 2323 5 0.215238915195867 RFvsST 33435 123655576 123622142 no 384.669313990993 TraesCS7B01G013200 chr7B_9754433 chr7B 9754433 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 9750728 9753050 2323 5 0.215238915195867 RFvsST 33435 123655576 123622142 no 384.669313990993 TraesCS7B01G013200 chr7B_9753267 chr7B 9753267 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 9750728 9753050 2323 5 0.215238915195867 RFvsST 33435 123655576 123622142 no 384.669313990993 TraesCS7B01G013200 chr7B_9750625 chr7B 9750625 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 9750728 9753050 2323 5 0.215238915195867 RFvsST 33435 123655576 123622142 no 384.669313990993 TraesCS7B01G014800 chr7B_11957389 chr7B 11957389 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 11960982 11962542 1561 1 0.0640614990390775 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G018300 chr7B_15301890 chr7B 15301890 C G C G 3 synonymous_variant LOW transcript unique_Triplet 15301854 15308688 6835 1 0.0146305779078274 RFvsST 33435 123655576 123622142 no 64.9076561726266 TraesCS7B01G020100 chr7B_17656905 chr7B 17656905 A G A G 3 synonymous_variant LOW transcript unique_Triplet 17650257 17657019 6763 3 0.0443590122726601 RFvsST 33435 123655576 123622142 no 374.9534094193 TraesCS7B01G020100 chr7B_17657111 chr7B 17657111 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 17650257 17657019 6763 3 0.0443590122726601 RFvsST 33435 123655576 123622142 no 374.9534094193 TraesCS7B01G020100 chr7B_17655931 chr7B 17655931 G C G C 3 synonymous_variant LOW transcript unique_Triplet 17650257 17657019 6763 3 0.0443590122726601 RFvsST 33435 123655576 123622142 no 374.9534094193 TraesCS7B01G021400 chr7B_19681688 chr7B 19681688 A G A G 3 synonymous_variant LOW transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19682576 chr7B 19682576 G A G A 3 synonymous_variant LOW transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19680997 chr7B 19680997 T C T C 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19681257 chr7B 19681257 G T G T 3 synonymous_variant LOW transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19683721 chr7B 19683721 A G A G 3 synonymous_variant LOW transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19681043 chr7B 19681043 G C G C 3 missense_variant MODERATE transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021400 chr7B_19681259 chr7B 19681259 C T C T 3 missense_variant MODERATE transcript non_Triplet 19680817 19684288 3472 7 0.201612903225806 RFvsST 33435 123655576 123622142 no 67.3806393850741 TraesCS7B01G021500 chr7B_19889963 chr7B 19889963 G A G A 3 missense_variant MODERATE transcript non_Triplet 19887989 19891435 3447 2 0.058021467943139 RFvsST 33435 123655576 123622142 no 10.9043580243645 TraesCS7B01G021500 chr7B_19889737 chr7B 19889737 T C T C 3 missense_variant MODERATE transcript non_Triplet 19887989 19891435 3447 2 0.058021467943139 RFvsST 33435 123655576 123622142 no 10.9043580243645 TraesCS7B01G022300 chr7B_21657821 chr7B 21657821 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 21652885 21657799 4915 1 0.0203458799593082 RFvsST 33435 123655576 123622142 no 4.71248280970511 TraesCS7B01G022400 chr7B_21668845 chr7B 21668845 G G C C 4 missense_variant MODERATE transcript unique_Triplet 21667002 21668909 1908 2 0.10482180293501 RFvsST 33435 123655576 123622142 no 27.0050949351519 TraesCS7B01G022400 chr7B_21668434 chr7B 21668434 A A G G 4 synonymous_variant LOW transcript unique_Triplet 21667002 21668909 1908 2 0.10482180293501 RFvsST 33435 123655576 123622142 no 27.0050949351519 TraesCS7B01G035200 chr7B_34389736 chr7B 34389736 A G A G 3 synonymous_variant LOW transcript unique_Triplet 34387262 34390217 2956 3 0.10148849797023 RFvsST 33435 123655576 123622142 no 932.832981736501 TraesCS7B01G035200 chr7B_34387261 chr7B 34387261 C G C G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 34387262 34390217 2956 3 0.10148849797023 RFvsST 33435 123655576 123622142 no 932.832981736501 TraesCS7B01G035200 chr7B_34387492 chr7B 34387492 A G A G 3 synonymous_variant LOW transcript unique_Triplet 34387262 34390217 2956 3 0.10148849797023 RFvsST 33435 123655576 123622142 no 932.832981736501 TraesCS7B01G035500 chr7B_34611632 chr7B 34611632 A G A G 3 missense_variant MODERATE transcript unique_Triplet 34610659 34612065 1407 1 0.0710732054015636 RFvsST 33435 123655576 123622142 no 83.8226437812045 TraesCS7B01G036100 chr7B_35083787 chr7B 35083787 A G A G 3 synonymous_variant LOW transcript unique_Triplet 35081606 35085600 3995 2 0.0500625782227785 RFvsST 33435 123655576 123622142 no 326.833124169751 TraesCS7B01G036100 chr7B_35084301 chr7B 35084301 G A G A 3 missense_variant MODERATE transcript unique_Triplet 35081606 35085600 3995 2 0.0500625782227785 RFvsST 33435 123655576 123622142 no 326.833124169751 TraesCS7B01G036600 chr7B_35507457 chr7B 35507457 C T C T 3 synonymous_variant LOW transcript non_Triplet 35507274 35508284 1011 3 0.29673590504451 RFvsST 33435 123655576 123622142 no 8.96720345320515 TraesCS7B01G036600 chr7B_35507962 chr7B 35507962 G C G C 3 synonymous_variant LOW transcript non_Triplet 35507274 35508284 1011 3 0.29673590504451 RFvsST 33435 123655576 123622142 no 8.96720345320515 TraesCS7B01G036600 chr7B_35507982 chr7B 35507982 C A C A 3 missense_variant MODERATE transcript non_Triplet 35507274 35508284 1011 3 0.29673590504451 RFvsST 33435 123655576 123622142 no 8.96720345320515 TraesCS7B01G036800 chr7B_35637403 chr7B 35637403 C G C G 3 synonymous_variant LOW transcript unique_Triplet 35637392 35639363 1972 2 0.101419878296146 RFvsST 33435 123655576 123622142 no 183.030468693917 TraesCS7B01G036800 chr7B_35639104 chr7B 35639104 T C T C 3 intron_variant MODIFIER transcript unique_Triplet 35637392 35639363 1972 2 0.101419878296146 RFvsST 33435 123655576 123622142 no 183.030468693917 TraesCS7B01G041500 chr7B_41168850 chr7B 41168850 C C T T 4 synonymous_variant LOW transcript unique_Triplet 41168229 41172416 4188 1 0.0238777459407832 RFvsST 33435 123655576 123622142 no 10.0013301189179 TraesCS7B01G042000 chr7B_41524540 chr7B 41524540 T G T G 3 upstream_gene_variant MODIFIER transcript non_Triplet 41521998 41522977 980 4 0.408163265306122 RFvsST 33435 123655576 123622142 no 8.77037087017504 TraesCS7B01G042000 chr7B_41524594 chr7B 41524594 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 41521998 41522977 980 4 0.408163265306122 RFvsST 33435 123655576 123622142 no 8.77037087017504 TraesCS7B01G042000 chr7B_41524572 chr7B 41524572 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 41521998 41522977 980 4 0.408163265306122 RFvsST 33435 123655576 123622142 no 8.77037087017504 TraesCS7B01G042000 chr7B_41524505 chr7B 41524505 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 41521998 41522977 980 4 0.408163265306122 RFvsST 33435 123655576 123622142 no 8.77037087017504 TraesCS7B01G042100 chr7B_41525179 chr7B 41525179 C T C T 3 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525205 chr7B 41525205 C T C T 3 splice_acceptor_variant&intron_variant HIGH transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525705 chr7B 41525705 C T C T 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525286 chr7B 41525286 G G A A 4 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525149 chr7B 41525149 T C T C 3 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41526040 chr7B 41526040 T C T C 3 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525423 chr7B 41525423 T C T C 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525279 chr7B 41525279 C T C T 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41526092 chr7B 41526092 T C T C 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525879 chr7B 41525879 A G A G 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525708 chr7B 41525708 A G A G 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41524662 chr7B 41524662 G A G A 3 synonymous_variant LOW transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41525885 chr7B 41525885 C G C G 3 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042100 chr7B_41526035 chr7B 41526035 C G C G 3 missense_variant MODERATE transcript non_Triplet 41524596 41526106 1511 14 0.926538716082065 RFvsST 33435 123655576 123622142 no 370.164540221772 TraesCS7B01G042400 chr7B_41543611 chr7B 41543611 C C T T 4 synonymous_variant LOW transcript non_Triplet 41542675 41544117 1443 1 0.0693000693000693 RFvsST 33435 123655576 123622142 no 51.1386356768822 TraesCS7B01G042800 chr7B_42078778 chr7B 42078778 T T C C 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42078472 chr7B 42078472 G G A A 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42077647 chr7B 42077647 C C T T 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42077571 chr7B 42077571 A A G G 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42078484 chr7B 42078484 C C T T 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42078717 chr7B 42078717 C C A A 4 missense_variant MODERATE transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42079063 chr7B 42079063 A A G G 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42077500 chr7B 42077500 C C T T 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G042800 chr7B_42079020 chr7B 42079020 A A G G 4 synonymous_variant LOW transcript unique_Triplet 42076982 42080151 3170 9 0.28391167192429 RFvsST 33435 123655576 123622142 no 144.034742253592 TraesCS7B01G044100 chr7B_43878767 chr7B 43878767 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 43876824 43878698 1875 2 0.106666666666667 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G044100 chr7B_43878680 chr7B 43878680 T T C C 4 synonymous_variant LOW transcript non_Triplet 43876824 43878698 1875 2 0.106666666666667 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G044200 chr7B_43879389 chr7B 43879389 C C T T 4 missense_variant MODERATE transcript non_Triplet 43879282 43883144 3863 3 0.0776598498576236 RFvsST 33435 123655576 123622142 no 171.593899578357 TraesCS7B01G044200 chr7B_43879327 chr7B 43879327 G A G A 3 synonymous_variant LOW transcript non_Triplet 43879282 43883144 3863 3 0.0776598498576236 RFvsST 33435 123655576 123622142 no 171.593899578357 TraesCS7B01G044200 chr7B_43881132 chr7B 43881132 C C T T 4 synonymous_variant LOW transcript non_Triplet 43879282 43883144 3863 3 0.0776598498576236 RFvsST 33435 123655576 123622142 no 171.593899578357 TraesCS7B01G044400 chr7B_43952388 chr7B 43952388 A T A T 3 synonymous_variant LOW transcript unique_Triplet 43949556 43956655 7100 3 0.0422535211267606 RFvsST 33435 123655576 123622142 no 34.4638074782939 TraesCS7B01G044400 chr7B_43956528 chr7B 43956528 A T A T 3 missense_variant MODERATE transcript unique_Triplet 43949556 43956655 7100 3 0.0422535211267606 RFvsST 33435 123655576 123622142 no 34.4638074782939 TraesCS7B01G044400 chr7B_43949852 chr7B 43949852 A G A G 3 synonymous_variant LOW transcript unique_Triplet 43949556 43956655 7100 3 0.0422535211267606 RFvsST 33435 123655576 123622142 no 34.4638074782939 TraesCS7B01G045100 chr7B_44294888 chr7B 44294888 G A G A 3 synonymous_variant LOW transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294484 chr7B 44294484 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294789 chr7B 44294789 G A G A 3 synonymous_variant LOW transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294683 chr7B 44294683 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294858 chr7B 44294858 C G C G 3 synonymous_variant LOW transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294693 chr7B 44294693 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294628 chr7B 44294628 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44295164 chr7B 44295164 A G A G 3 synonymous_variant LOW transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294647 chr7B 44294647 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G045100 chr7B_44294715 chr7B 44294715 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 44294422 44298517 4096 10 0.244140625 RFvsST 33435 123655576 123622142 no 207.656579779166 TraesCS7B01G047100 chr7B_46350463 chr7B 46350463 A A G G 4 missense_variant MODERATE transcript non_Triplet 46343441 46351968 8528 5 0.0586303939962477 RFvsST 33435 123655576 123622142 no 324.731406098805 TraesCS7B01G047100 chr7B_46350797 chr7B 46350797 C T C T 3 missense_variant MODERATE transcript non_Triplet 46343441 46351968 8528 5 0.0586303939962477 RFvsST 33435 123655576 123622142 no 324.731406098805 TraesCS7B01G047100 chr7B_46351586 chr7B 46351586 C T C T 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 46343441 46351968 8528 5 0.0586303939962477 RFvsST 33435 123655576 123622142 no 324.731406098805 TraesCS7B01G047100 chr7B_46349379 chr7B 46349379 C T C T 3 synonymous_variant LOW transcript non_Triplet 46343441 46351968 8528 5 0.0586303939962477 RFvsST 33435 123655576 123622142 no 324.731406098805 TraesCS7B01G047100 chr7B_46351242 chr7B 46351242 C T C T 3 synonymous_variant LOW transcript non_Triplet 46343441 46351968 8528 5 0.0586303939962477 RFvsST 33435 123655576 123622142 no 324.731406098805 TraesCS7B01G047200 chr7B_46888929 chr7B 46888929 T G T G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 46887774 46888780 1007 3 0.297914597815293 RFvsST 33435 123655576 123622142 no 87.0241113748251 TraesCS7B01G047200 chr7B_46887797 chr7B 46887797 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 46887774 46888780 1007 3 0.297914597815293 RFvsST 33435 123655576 123622142 no 87.0241113748251 TraesCS7B01G047200 chr7B_46888871 chr7B 46888871 G C G C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 46887774 46888780 1007 3 0.297914597815293 RFvsST 33435 123655576 123622142 no 87.0241113748251 TraesCS7B01G047400 chr7B_47000001 chr7B 47000001 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 46990894 46996546 5653 2 0.0353794445427207 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G047400 chr7B_46999849 chr7B 46999849 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 46990894 46996546 5653 2 0.0353794445427207 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G047500 chr7B_46999576 chr7B 46999576 T T C C 4 synonymous_variant LOW transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46998918 chr7B 46998918 T T C C 4 synonymous_variant LOW transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46999836 chr7B 46999836 C T C T 3 missense_variant MODERATE transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46997667 chr7B 46997667 C T C T 3 synonymous_variant LOW transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46999659 chr7B 46999659 G G A A 4 missense_variant MODERATE transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46997692 chr7B 46997692 G G C C 4 missense_variant MODERATE transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G047500 chr7B_46999546 chr7B 46999546 C C A A 4 synonymous_variant LOW transcript unique_Triplet 46997623 46999843 2221 7 0.315173345339937 RFvsST 33435 123655576 123622142 no 100.549574841651 TraesCS7B01G051400 chr7B_53647026 chr7B 53647026 T A T A 3 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53652441 chr7B 53652441 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53646858 chr7B 53646858 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53647152 chr7B 53647152 A T A T 3 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53652527 chr7B 53652527 G A G A 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53647771 chr7B 53647771 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53646172 chr7B 53646172 A G A G 3 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53648240 chr7B 53648240 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53647855 chr7B 53647855 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53652273 chr7B 53652273 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53647533 chr7B 53647533 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051400 chr7B_53647651 chr7B 53647651 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 53646235 53652463 6229 12 0.192647294910901 RFvsST 33435 123655576 123622142 no 380.121727569795 TraesCS7B01G051900 chr7B_54499480 chr7B 54499480 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 54495936 54499731 3796 1 0.0263435194942044 RFvsST 33435 123655576 123622142 no 47.4393848822292 TraesCS7B01G052300 chr7B_54789073 chr7B 54789073 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 54787742 54788995 1254 2 0.159489633173844 RFvsST 33435 123655576 123622142 no 281.312818966783 TraesCS7B01G052300 chr7B_54787902 chr7B 54787902 C T C T 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 54787742 54788995 1254 2 0.159489633173844 RFvsST 33435 123655576 123622142 no 281.312818966783 TraesCS7B01G054100 chr7B_57269212 chr7B 57269212 G C G C 3 missense_variant MODERATE transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57269301 chr7B 57269301 G G A A 4 synonymous_variant LOW transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57269115 chr7B 57269115 A G A G 3 synonymous_variant LOW transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57268935 chr7B 57268935 C T C T 3 synonymous_variant LOW transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57268045 chr7B 57268045 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57268047 chr7B 57268047 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57269205 chr7B 57269205 G A G A 3 synonymous_variant LOW transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054100 chr7B_57268149 chr7B 57268149 G A G A 3 synonymous_variant LOW transcript non_Triplet 57268056 57269345 1290 8 0.62015503875969 RFvsST 33435 123655576 123622142 no 138.757370219319 TraesCS7B01G054400 chr7B_57588025 chr7B 57588025 C C G G 4 synonymous_variant LOW transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G054400 chr7B_57588130 chr7B 57588130 G G T T 4 synonymous_variant LOW transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G054400 chr7B_57591534 chr7B 57591534 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G054400 chr7B_57588131 chr7B 57588131 C A C A 3 synonymous_variant LOW transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G054400 chr7B_57591719 chr7B 57591719 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G054400 chr7B_57588147 chr7B 57588147 T T C C 4 missense_variant MODERATE transcript unique_Triplet 57587981 57591531 3551 6 0.168966488313151 RFvsST 33435 123655576 123622142 no 151.920073369157 TraesCS7B01G055300 chr7B_58727902 chr7B 58727902 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58727993 chr7B 58727993 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58727873 chr7B 58727873 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58728694 chr7B 58728694 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58728050 chr7B 58728050 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58727871 chr7B 58727871 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58730327 chr7B 58730327 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58727578 chr7B 58727578 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58732201 chr7B 58732201 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055300 chr7B_58732207 chr7B 58732207 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 58727424 58733811 6388 10 0.156543519098309 RFvsST 33435 123655576 123622142 no 228.662662513023 TraesCS7B01G055400 chr7B_58788960 chr7B 58788960 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 58788546 58791577 3032 1 0.0329815303430079 RFvsST 33435 123655576 123622142 no 27.4189319114423 TraesCS7B01G055700 chr7B_59059725 chr7B 59059725 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 59060660 59062850 2191 1 0.0456412596987677 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G056700 chr7B_59633170 chr7B 59633170 G G A A 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635803 chr7B 59635803 G G A A 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635891 chr7B 59635891 G G A A 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59633269 chr7B 59633269 C C T T 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59631933 chr7B 59631933 C C T T 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59631042 chr7B 59631042 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635796 chr7B 59635796 C C T T 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59632081 chr7B 59632081 A A C C 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635894 chr7B 59635894 A A G G 4 missense_variant MODERATE transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635401 chr7B 59635401 A A G G 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59632140 chr7B 59632140 G G A A 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635350 chr7B 59635350 C C T T 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59635062 chr7B 59635062 A A G G 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59633640 chr7B 59633640 C C T T 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G056700 chr7B_59633976 chr7B 59633976 T T C C 4 synonymous_variant LOW transcript non_Triplet 59631181 59635962 4782 15 0.313676286072773 RFvsST 33435 123655576 123622142 no 356.651037820493 TraesCS7B01G057000 chr7B_59647018 chr7B 59647018 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 59645164 59646774 1611 1 0.0620732464307883 RFvsST 33435 123655576 123622142 no No_match TraesCS7B01G064200 chr7B_69821609 chr7B 69821609 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 69819113 69821467 2355 1 0.0424628450106157 RFvsST 33435 123655576 123622142 no 152.549407246296 TraesCS7B01G064400 chr7B_69914632 chr7B 69914632 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 69912899 69914527 1629 1 0.0613873542050338 RFvsST 33435 123655576 123622142 no 15.9144459049528 TraesCS7B01G197700 chr7B_344738995 chr7B 344738995 A G A G 3 missense_variant MODERATE transcript non_Triplet 344727950 344739068 11119 1 0.00899361453368109 RFvsST 228811538 750603674 521792137 no 1175.90499956625 TraesCS7B01G198200 chr7B_350452117 chr7B 350452117 C C T T 4 missense_variant MODERATE transcript non_Triplet 350449941 350456215 6275 1 0.0159362549800797 RFvsST 228811538 750603674 521792137 no 958.393549793238 TraesCS7B01G199100 chr7B_357654909 chr7B 357654909 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 357638920 357654888 15969 1 0.00626213288245977 RFvsST 228811538 750603674 521792137 no 49.3051168739778 TraesCS7B01G205100 chr7B_375393997 chr7B 375393997 C C T T 4 missense_variant MODERATE transcript unique_Triplet 375393587 375395754 2168 1 0.0461254612546125 RFvsST 228811538 750603674 521792137 no 87.8643695184797 TraesCS7B01G205600 chr7B_376431791 chr7B 376431791 G A G A 3 missense_variant MODERATE transcript unique_Triplet 376430982 376433367 2386 1 0.0419111483654652 RFvsST 228811538 750603674 521792137 no 56.5317266392568 TraesCS7B01G209700 chr7B_382609591 chr7B 382609591 G G A A 4 missense_variant MODERATE transcript unique_Triplet 382606239 382610804 4566 1 0.0219010074463425 RFvsST 228811538 750603674 521792137 no 229.947327860776 TraesCS7B01G211500 chr7B_387150397 chr7B 387150397 G G A A 4 missense_variant MODERATE transcript unique_Triplet 387150106 387159716 9611 1 0.010404744563521 RFvsST 228811538 750603674 521792137 no 51.9527083457728 TraesCS7B01G214300 chr7B_393314447 chr7B 393314447 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 393314826 393317768 2943 1 0.0339789330615019 RFvsST 228811538 750603674 521792137 no 427.543818364523 TraesCS7B01G218500 chr7B_405067506 chr7B 405067506 T T C C 4 missense_variant MODERATE transcript non_Triplet 405049408 405068391 18984 1 0.00526759376316898 RFvsST 228811538 750603674 521792137 no 174.625101453676 TraesCS7B01G222100 chr7B_416440578 chr7B 416440578 T A T A 3 missense_variant MODERATE transcript non_Triplet 416438190 416441098 2909 1 0.0343760742523204 RFvsST 228811538 750603674 521792137 no 301.877046719112 TraesCS7B01G223400 chr7B_421701075 chr7B 421701075 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 421697356 421699840 2485 1 0.0402414486921529 RFvsST 228811538 750603674 521792137 no 231.965323117305 TraesCS7B01G226500 chr7B_426970282 chr7B 426970282 C T C T 3 missense_variant MODERATE transcript unique_Triplet 426968813 426970585 1773 1 0.0564015792442188 RFvsST 228811538 750603674 521792137 no 17.0173638654089 TraesCS7B01G231000 chr7B_433508698 chr7B 433508698 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 433505376 433524946 19571 2 0.0102192018803331 RFvsST 228811538 750603674 521792137 no 16.920801615516 TraesCS7B01G231000 chr7B_433518753 chr7B 433518753 C C G G 4 intron_variant MODIFIER transcript unique_Triplet 433505376 433524946 19571 2 0.0102192018803331 RFvsST 228811538 750603674 521792137 no 16.920801615516 TraesCS7B01G232600 chr7B_435815231 chr7B 435815231 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 435808751 435815169 6419 1 0.0155787505842031 RFvsST 228811538 750603674 521792137 no 282.61063578392 TraesCS7B01G233400 chr7B_436839072 chr7B 436839072 T T A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 436838688 436839071 384 1 0.260416666666667 RFvsST 228811538 750603674 521792137 no 58.1111104809615 TraesCS7B01G233800 chr7B_437670112 chr7B 437670112 C T C T 3 missense_variant MODERATE transcript non_Triplet 437670041 437673233 3193 1 0.0313185092389602 RFvsST 228811538 750603674 521792137 no 79.1364961750399 TraesCS7B01G238500 chr7B_443852508 chr7B 443852508 A T A T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 443849368 443852257 2890 2 0.0692041522491349 RFvsST 228811538 750603674 521792137 no 252.808558659202 TraesCS7B01G238500 chr7B_443852506 chr7B 443852506 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 443849368 443852257 2890 2 0.0692041522491349 RFvsST 228811538 750603674 521792137 no 252.808558659202 TraesCS7B01G244000 chr7B_452473388 chr7B 452473388 G G T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 452468173 452468507 335 1 0.298507462686567 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G245400 chr7B_453768967 chr7B 453768967 T T C C 4 missense_variant MODERATE transcript unique_Triplet 453761339 453769676 8338 1 0.0119932837610938 RFvsST 228811538 750603674 521792137 no 92.874118679354 TraesCS7B01G245500 chr7B_454181904 chr7B 454181904 C C G G 4 synonymous_variant LOW transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G245500 chr7B_454181820 chr7B 454181820 G G C C 4 synonymous_variant LOW transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G245500 chr7B_454181917 chr7B 454181917 C C A A 4 missense_variant MODERATE transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G245500 chr7B_454181733 chr7B 454181733 G G C C 4 synonymous_variant LOW transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G245500 chr7B_454181769 chr7B 454181769 G G C C 4 synonymous_variant LOW transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G245500 chr7B_454181850 chr7B 454181850 C C G G 4 synonymous_variant LOW transcript unique_Triplet 454181608 454183225 1618 6 0.370828182941904 RFvsST 228811538 750603674 521792137 no 481.246344709583 TraesCS7B01G246400 chr7B_456125325 chr7B 456125325 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 456123105 456123554 450 1 0.222222222222222 RFvsST 228811538 750603674 521792137 no 6.19632055491145 TraesCS7B01G246700 chr7B_456915995 chr7B 456915995 C C T T 4 synonymous_variant LOW transcript unique_Triplet 456915414 456916826 1413 2 0.141542816702052 RFvsST 228811538 750603674 521792137 no 165.854364451538 TraesCS7B01G246700 chr7B_456915632 chr7B 456915632 C C T T 4 synonymous_variant LOW transcript unique_Triplet 456915414 456916826 1413 2 0.141542816702052 RFvsST 228811538 750603674 521792137 no 165.854364451538 TraesCS7B01G246900 chr7B_457244113 chr7B 457244113 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 457244334 457251913 7580 2 0.0263852242744063 RFvsST 228811538 750603674 521792137 no 143.021071864466 TraesCS7B01G246900 chr7B_457252679 chr7B 457252679 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457244334 457251913 7580 2 0.0263852242744063 RFvsST 228811538 750603674 521792137 no 143.021071864466 TraesCS7B01G247100 chr7B_457403610 chr7B 457403610 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 457397296 457401826 4531 2 0.0441403663650408 RFvsST 228811538 750603674 521792137 no 56.1758865989 TraesCS7B01G247100 chr7B_457401734 chr7B 457401734 G G A A 4 missense_variant MODERATE transcript unique_Triplet 457397296 457401826 4531 2 0.0441403663650408 RFvsST 228811538 750603674 521792137 no 56.1758865989 TraesCS7B01G253400 chr7B_467423060 chr7B 467423060 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 467423407 467423835 429 1 0.233100233100233 RFvsST 228811538 750603674 521792137 no 547.239725028099 TraesCS7B01G254000 chr7B_468125005 chr7B 468125005 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 468122683 468124775 2093 1 0.0477783086478739 RFvsST 228811538 750603674 521792137 no 227.616271307905 TraesCS7B01G255100 chr7B_472333634 chr7B 472333634 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 472327993 472330570 2578 1 0.0387897595034911 RFvsST 228811538 750603674 521792137 no 63.2939974111462 TraesCS7B01G256900 chr7B_476199531 chr7B 476199531 G G A A 4 missense_variant MODERATE transcript unique_Triplet 476198767 476202063 3297 1 0.0303306035790112 RFvsST 228811538 750603674 521792137 no 9.70645511475822 TraesCS7B01G261800 chr7B_482238451 chr7B 482238451 A G A G 3 missense_variant MODERATE transcript nonUnique_Triplet 482237953 482248003 10051 1 0.00994925878022087 RFvsST 228811538 750603674 521792137 no 158.745363331055 TraesCS7B01G262200 chr7B_483232183 chr7B 483232183 G G T T 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483232219 chr7B 483232219 A A G G 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483233578 chr7B 483233578 G G A A 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483233756 chr7B 483233756 G G T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483233072 chr7B 483233072 C C A A 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483232339 chr7B 483232339 G G C C 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483233023 chr7B 483233023 C C T T 4 synonymous_variant LOW transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262200 chr7B_483233601 chr7B 483233601 G G C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 483225827 483233593 7767 8 0.102999871250161 RFvsST 228811538 750603674 521792137 no 144.01702727918 TraesCS7B01G262300 chr7B_483328963 chr7B 483328963 C C T T 4 missense_variant MODERATE transcript non_Triplet 483328732 483329233 502 2 0.398406374501992 RFvsST 228811538 750603674 521792137 no 49.5678489926721 TraesCS7B01G262300 chr7B_483328970 chr7B 483328970 A A G G 4 synonymous_variant LOW transcript non_Triplet 483328732 483329233 502 2 0.398406374501992 RFvsST 228811538 750603674 521792137 no 49.5678489926721 TraesCS7B01G262400 chr7B_483328580 chr7B 483328580 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 483329885 483330760 876 4 0.45662100456621 RFvsST 228811538 750603674 521792137 no 7.15484715786295 TraesCS7B01G262400 chr7B_483328617 chr7B 483328617 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 483329885 483330760 876 4 0.45662100456621 RFvsST 228811538 750603674 521792137 no 7.15484715786295 TraesCS7B01G262400 chr7B_483328667 chr7B 483328667 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 483329885 483330760 876 4 0.45662100456621 RFvsST 228811538 750603674 521792137 no 7.15484715786295 TraesCS7B01G262400 chr7B_483328610 chr7B 483328610 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 483329885 483330760 876 4 0.45662100456621 RFvsST 228811538 750603674 521792137 no 7.15484715786295 TraesCS7B01G264800 chr7B_485430818 chr7B 485430818 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 485429696 485431204 1509 3 0.198807157057654 RFvsST 228811538 750603674 521792137 no 268.895138853877 TraesCS7B01G264800 chr7B_485430952 chr7B 485430952 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 485429696 485431204 1509 3 0.198807157057654 RFvsST 228811538 750603674 521792137 no 268.895138853877 TraesCS7B01G264800 chr7B_485430110 chr7B 485430110 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 485429696 485431204 1509 3 0.198807157057654 RFvsST 228811538 750603674 521792137 no 268.895138853877 TraesCS7B01G265300 chr7B_487803232 chr7B 487803232 A A C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 487800446 487802619 2174 2 0.0919963201471941 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G265300 chr7B_487803231 chr7B 487803231 A A T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 487800446 487802619 2174 2 0.0919963201471941 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G265400 chr7B_487810143 chr7B 487810143 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 487803428 487805992 2565 2 0.0779727095516569 RFvsST 228811538 750603674 521792137 no 174.386132785994 TraesCS7B01G265400 chr7B_487810140 chr7B 487810140 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 487803428 487805992 2565 2 0.0779727095516569 RFvsST 228811538 750603674 521792137 no 174.386132785994 TraesCS7B01G265500 chr7B_487814921 chr7B 487814921 T T A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 487810389 487814793 4405 1 0.0227014755959137 RFvsST 228811538 750603674 521792137 no 807.936405384258 TraesCS7B01G268700 chr7B_491929587 chr7B 491929587 A G A G 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 491920320 491929524 9205 2 0.0217273221075502 RFvsST 228811538 750603674 521792137 no 60.4801529924569 TraesCS7B01G268700 chr7B_491929465 chr7B 491929465 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 491920320 491929524 9205 2 0.0217273221075502 RFvsST 228811538 750603674 521792137 no 60.4801529924569 TraesCS7B01G269000 chr7B_492740690 chr7B 492740690 T C T C 3 synonymous_variant LOW transcript unique_Triplet 492734681 492746659 11979 1 0.00834794223223975 RFvsST 228811538 750603674 521792137 no 815.819875526181 TraesCS7B01G269300 chr7B_493521005 chr7B 493521005 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 493521198 493527070 5873 2 0.0340541460922867 RFvsST 228811538 750603674 521792137 no 235.327766407129 TraesCS7B01G269300 chr7B_493526352 chr7B 493526352 G A G A 3 synonymous_variant LOW transcript unique_Triplet 493521198 493527070 5873 2 0.0340541460922867 RFvsST 228811538 750603674 521792137 no 235.327766407129 TraesCS7B01G270500 chr7B_495758358 chr7B 495758358 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 495755435 495758208 2774 3 0.108147080028839 RFvsST 228811538 750603674 521792137 no 163.939336143043 TraesCS7B01G270500 chr7B_495756807 chr7B 495756807 A G A G 3 missense_variant MODERATE transcript unique_Triplet 495755435 495758208 2774 3 0.108147080028839 RFvsST 228811538 750603674 521792137 no 163.939336143043 TraesCS7B01G270500 chr7B_495755347 chr7B 495755347 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 495755435 495758208 2774 3 0.108147080028839 RFvsST 228811538 750603674 521792137 no 163.939336143043 TraesCS7B01G270600 chr7B_496273350 chr7B 496273350 T C T C 3 synonymous_variant LOW transcript unique_Triplet 496272022 496276685 4664 5 0.107204116638079 RFvsST 228811538 750603674 521792137 no 860.543893788081 TraesCS7B01G270600 chr7B_496271809 chr7B 496271809 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 496272022 496276685 4664 5 0.107204116638079 RFvsST 228811538 750603674 521792137 no 860.543893788081 TraesCS7B01G270600 chr7B_496272052 chr7B 496272052 G T G T 3 missense_variant MODERATE transcript unique_Triplet 496272022 496276685 4664 5 0.107204116638079 RFvsST 228811538 750603674 521792137 no 860.543893788081 TraesCS7B01G270600 chr7B_496272000 chr7B 496272000 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 496272022 496276685 4664 5 0.107204116638079 RFvsST 228811538 750603674 521792137 no 860.543893788081 TraesCS7B01G270600 chr7B_496272048 chr7B 496272048 T G T G 3 synonymous_variant LOW transcript unique_Triplet 496272022 496276685 4664 5 0.107204116638079 RFvsST 228811538 750603674 521792137 no 860.543893788081 TraesCS7B01G270900 chr7B_497025115 chr7B 497025115 T G T G 3 synonymous_variant LOW transcript unique_Triplet 497024086 497027271 3186 3 0.0941619585687382 RFvsST 228811538 750603674 521792137 no 819.212212046923 TraesCS7B01G270900 chr7B_497025832 chr7B 497025832 A G A G 3 synonymous_variant LOW transcript unique_Triplet 497024086 497027271 3186 3 0.0941619585687382 RFvsST 228811538 750603674 521792137 no 819.212212046923 TraesCS7B01G270900 chr7B_497027103 chr7B 497027103 T C T C 3 missense_variant MODERATE transcript unique_Triplet 497024086 497027271 3186 3 0.0941619585687382 RFvsST 228811538 750603674 521792137 no 819.212212046923 TraesCS7B01G271100 chr7B_497883295 chr7B 497883295 C T C T 3 stop_gained HIGH transcript unique_Triplet 497875477 497883321 7845 3 0.0382409177820268 RFvsST 228811538 750603674 521792137 no 41.7879769593168 TraesCS7B01G271100 chr7B_497883089 chr7B 497883089 T C T C 3 missense_variant MODERATE transcript unique_Triplet 497875477 497883321 7845 3 0.0382409177820268 RFvsST 228811538 750603674 521792137 no 41.7879769593168 TraesCS7B01G271100 chr7B_497875125 chr7B 497875125 A C A C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 497875477 497883321 7845 3 0.0382409177820268 RFvsST 228811538 750603674 521792137 no 41.7879769593168 TraesCS7B01G271200 chr7B_498085895 chr7B 498085895 T C T C 3 missense_variant MODERATE transcript unique_Triplet 498085563 498091364 5802 2 0.0344708721130645 RFvsST 228811538 750603674 521792137 no 657.641124113132 TraesCS7B01G271200 chr7B_498085878 chr7B 498085878 G C G C 3 synonymous_variant LOW transcript unique_Triplet 498085563 498091364 5802 2 0.0344708721130645 RFvsST 228811538 750603674 521792137 no 657.641124113132 TraesCS7B01G276500 chr7B_505936455 chr7B 505936455 G G C C 4 synonymous_variant LOW transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G276500 chr7B_505939784 chr7B 505939784 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G276500 chr7B_505938925 chr7B 505938925 T C T C 3 synonymous_variant LOW transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G276500 chr7B_505938969 chr7B 505938969 A G A G 3 missense_variant MODERATE transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G276500 chr7B_505935364 chr7B 505935364 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G276500 chr7B_505935550 chr7B 505935550 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 505935553 505939675 4123 6 0.145525103080281 RFvsST 228811538 750603674 521792137 no 267.479582375252 TraesCS7B01G277300 chr7B_506995936 chr7B 506995936 A A C C 4 missense_variant MODERATE transcript unique_Triplet 506992710 506997451 4742 1 0.0210881484605652 RFvsST 228811538 750603674 521792137 no 201.05882796793 TraesCS7B01G277400 chr7B_507140644 chr7B 507140644 C C T T 4 synonymous_variant LOW transcript unique_Triplet 507138809 507141282 2474 3 0.121261115602264 RFvsST 228811538 750603674 521792137 no 226.064161706403 TraesCS7B01G277400 chr7B_507141259 chr7B 507141259 G G T T 4 synonymous_variant LOW transcript unique_Triplet 507138809 507141282 2474 3 0.121261115602264 RFvsST 228811538 750603674 521792137 no 226.064161706403 TraesCS7B01G277400 chr7B_507140866 chr7B 507140866 T T C C 4 synonymous_variant LOW transcript unique_Triplet 507138809 507141282 2474 3 0.121261115602264 RFvsST 228811538 750603674 521792137 no 226.064161706403 TraesCS7B01G277900 chr7B_508659851 chr7B 508659851 C T C T 3 synonymous_variant LOW transcript unique_Triplet 508656653 508660960 4308 2 0.0464252553389044 RFvsST 228811538 750603674 521792137 no 455.745134730075 TraesCS7B01G277900 chr7B_508659211 chr7B 508659211 C C T T 4 synonymous_variant LOW transcript unique_Triplet 508656653 508660960 4308 2 0.0464252553389044 RFvsST 228811538 750603674 521792137 no 455.745134730075 TraesCS7B01G278100 chr7B_508980349 chr7B 508980349 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 508979428 508980473 1046 3 0.286806883365201 RFvsST 228811538 750603674 521792137 no 266.777668396639 TraesCS7B01G278100 chr7B_508980383 chr7B 508980383 G G A A 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 508979428 508980473 1046 3 0.286806883365201 RFvsST 228811538 750603674 521792137 no 266.777668396639 TraesCS7B01G278100 chr7B_508979731 chr7B 508979731 A A C C 4 missense_variant MODERATE transcript nonUnique_Triplet 508979428 508980473 1046 3 0.286806883365201 RFvsST 228811538 750603674 521792137 no 266.777668396639 TraesCS7B01G278800 chr7B_511065021 chr7B 511065021 T T G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 511062371 511064432 2062 5 0.242483026188167 RFvsST 228811538 750603674 521792137 no 552.203771635501 TraesCS7B01G278800 chr7B_511064940 chr7B 511064940 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 511062371 511064432 2062 5 0.242483026188167 RFvsST 228811538 750603674 521792137 no 552.203771635501 TraesCS7B01G278800 chr7B_511064039 chr7B 511064039 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 511062371 511064432 2062 5 0.242483026188167 RFvsST 228811538 750603674 521792137 no 552.203771635501 TraesCS7B01G278800 chr7B_511064752 chr7B 511064752 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 511062371 511064432 2062 5 0.242483026188167 RFvsST 228811538 750603674 521792137 no 552.203771635501 TraesCS7B01G278800 chr7B_511062334 chr7B 511062334 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 511062371 511064432 2062 5 0.242483026188167 RFvsST 228811538 750603674 521792137 no 552.203771635501 TraesCS7B01G279200 chr7B_511928350 chr7B 511928350 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 511925272 511925604 333 1 0.3003003003003 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G279300 chr7B_511934364 chr7B 511934364 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 511928522 511934290 5769 1 0.0173340266944011 RFvsST 228811538 750603674 521792137 no 14.2243798373788 TraesCS7B01G279800 chr7B_512744784 chr7B 512744784 G G A A 4 synonymous_variant LOW transcript unique_Triplet 512739104 512745189 6086 2 0.0328623069339468 RFvsST 228811538 750603674 521792137 no 144.662896782478 TraesCS7B01G279800 chr7B_512744874 chr7B 512744874 A A G G 4 synonymous_variant LOW transcript unique_Triplet 512739104 512745189 6086 2 0.0328623069339468 RFvsST 228811538 750603674 521792137 no 144.662896782478 TraesCS7B01G279900 chr7B_512750602 chr7B 512750602 G G A A 4 synonymous_variant LOW transcript unique_Triplet 512750271 512752880 2610 4 0.153256704980843 RFvsST 228811538 750603674 521792137 no 235.037639474519 TraesCS7B01G279900 chr7B_512757386 chr7B 512757386 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 512750271 512752880 2610 4 0.153256704980843 RFvsST 228811538 750603674 521792137 no 235.037639474519 TraesCS7B01G279900 chr7B_512750989 chr7B 512750989 A A G G 4 synonymous_variant LOW transcript unique_Triplet 512750271 512752880 2610 4 0.153256704980843 RFvsST 228811538 750603674 521792137 no 235.037639474519 TraesCS7B01G279900 chr7B_512750296 chr7B 512750296 A A G G 4 missense_variant MODERATE transcript unique_Triplet 512750271 512752880 2610 4 0.153256704980843 RFvsST 228811538 750603674 521792137 no 235.037639474519 TraesCS7B01G280100 chr7B_513242047 chr7B 513242047 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 513240133 513242145 2013 3 0.14903129657228 RFvsST 228811538 750603674 521792137 no 124.517003379101 TraesCS7B01G280100 chr7B_513241854 chr7B 513241854 G G A A 4 missense_variant MODERATE transcript unique_Triplet 513240133 513242145 2013 3 0.14903129657228 RFvsST 228811538 750603674 521792137 no 124.517003379101 TraesCS7B01G280100 chr7B_513241866 chr7B 513241866 G A G A 3 missense_variant MODERATE transcript unique_Triplet 513240133 513242145 2013 3 0.14903129657228 RFvsST 228811538 750603674 521792137 no 124.517003379101 TraesCS7B01G280300 chr7B_513303312 chr7B 513303312 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513303845 513306387 2543 2 0.0786472670074715 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G280300 chr7B_513302443 chr7B 513302443 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513303845 513306387 2543 2 0.0786472670074715 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G280500 chr7B_513650612 chr7B 513650612 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 513652115 513658402 6288 1 0.0159033078880407 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G280600 chr7B_513724965 chr7B 513724965 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 513719286 513720940 1655 1 0.0604229607250755 RFvsST 228811538 750603674 521792137 no 8.48484308668572 TraesCS7B01G280700 chr7B_513725823 chr7B 513725823 G G A A 4 missense_variant MODERATE transcript unique_Triplet 513725083 513730513 5431 4 0.0736512612778494 RFvsST 228811538 750603674 521792137 no 115.538877743956 TraesCS7B01G280700 chr7B_513726264 chr7B 513726264 G G T T 4 missense_variant MODERATE transcript unique_Triplet 513725083 513730513 5431 4 0.0736512612778494 RFvsST 228811538 750603674 521792137 no 115.538877743956 TraesCS7B01G280700 chr7B_513726111 chr7B 513726111 T T C C 4 missense_variant MODERATE transcript unique_Triplet 513725083 513730513 5431 4 0.0736512612778494 RFvsST 228811538 750603674 521792137 no 115.538877743956 TraesCS7B01G280700 chr7B_513729437 chr7B 513729437 G G A A 4 missense_variant MODERATE transcript unique_Triplet 513725083 513730513 5431 4 0.0736512612778494 RFvsST 228811538 750603674 521792137 no 115.538877743956 TraesCS7B01G281400 chr7B_514515588 chr7B 514515588 A A T T 4 missense_variant MODERATE transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G281400 chr7B_514514272 chr7B 514514272 T T C C 4 missense_variant MODERATE transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G281400 chr7B_514512708 chr7B 514512708 G G T T 4 missense_variant MODERATE transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G281400 chr7B_514515694 chr7B 514515694 A A G G 4 synonymous_variant LOW transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G281400 chr7B_514518655 chr7B 514518655 C C G G 4 missense_variant MODERATE transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G281400 chr7B_514515705 chr7B 514515705 G G T T 4 missense_variant MODERATE transcript non_Triplet 514511823 514519604 7782 6 0.0771010023130301 RFvsST 228811538 750603674 521792137 no 88.6948882740249 TraesCS7B01G282300 chr7B_516478834 chr7B 516478834 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 516478591 516484036 5446 1 0.0183621006243114 RFvsST 228811538 750603674 521792137 no 112.658617462797 TraesCS7B01G282400 chr7B_516794042 chr7B 516794042 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 516791340 516794023 2684 1 0.03725782414307 RFvsST 228811538 750603674 521792137 no 12.3025914011668 TraesCS7B01G282700 chr7B_516931374 chr7B 516931374 T T A A 4 synonymous_variant LOW transcript unique_Triplet 516931041 516933662 2622 1 0.03813882532418 RFvsST 228811538 750603674 521792137 no 25.7996255808401 TraesCS7B01G282800 chr7B_517091070 chr7B 517091070 T T C C 4 synonymous_variant LOW transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517104693 chr7B 517104693 G G A A 4 synonymous_variant LOW transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517103892 chr7B 517103892 A A G G 4 missense_variant MODERATE transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517090958 chr7B 517090958 G G T T 4 missense_variant MODERATE transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517090936 chr7B 517090936 T T C C 4 missense_variant MODERATE transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517103896 chr7B 517103896 C C T T 4 synonymous_variant LOW transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517103764 chr7B 517103764 A A G G 4 synonymous_variant LOW transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282800 chr7B_517105597 chr7B 517105597 G G A A 4 missense_variant MODERATE transcript unique_Triplet 517090792 517105976 15185 8 0.0526835693118209 RFvsST 228811538 750603674 521792137 no 227.383440132286 TraesCS7B01G282900 chr7B_517312079 chr7B 517312079 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 517306828 517309367 2540 3 0.118110236220472 RFvsST 228811538 750603674 521792137 no 12.2514448139435 TraesCS7B01G282900 chr7B_517311366 chr7B 517311366 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 517306828 517309367 2540 3 0.118110236220472 RFvsST 228811538 750603674 521792137 no 12.2514448139435 TraesCS7B01G282900 chr7B_517308172 chr7B 517308172 C C G G 4 synonymous_variant LOW transcript unique_Triplet 517306828 517309367 2540 3 0.118110236220472 RFvsST 228811538 750603674 521792137 no 12.2514448139435 TraesCS7B01G283000 chr7B_517309379 chr7B 517309379 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 517310463 517312030 1568 2 0.127551020408163 RFvsST 228811538 750603674 521792137 no 12409.0055744258 TraesCS7B01G283000 chr7B_517309377 chr7B 517309377 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 517310463 517312030 1568 2 0.127551020408163 RFvsST 228811538 750603674 521792137 no 12409.0055744258 TraesCS7B01G284400 chr7B_518387056 chr7B 518387056 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 518383786 518386592 2807 1 0.0356252226576416 RFvsST 228811538 750603674 521792137 no 50.3495383111457 TraesCS7B01G284500 chr7B_518387899 chr7B 518387899 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518387911 chr7B 518387911 T G T G 3 synonymous_variant LOW transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388759 chr7B 518388759 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388768 chr7B 518388768 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388713 chr7B 518388713 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388246 chr7B 518388246 C A C A 3 missense_variant MODERATE transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388725 chr7B 518388725 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388195 chr7B 518388195 G A G A 3 synonymous_variant LOW transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G284500 chr7B_518388274 chr7B 518388274 T C T C 3 missense_variant MODERATE transcript nonUnique_Triplet 518387174 518388823 1650 9 0.545454545454546 RFvsST 228811538 750603674 521792137 no 64.3180463145151 TraesCS7B01G285000 chr7B_518680068 chr7B 518680068 G A G A 3 missense_variant MODERATE transcript nonUnique_Triplet 518679572 518686443 6872 1 0.0145518044237485 RFvsST 228811538 750603674 521792137 no 18.9338219376271 TraesCS7B01G285700 chr7B_520416411 chr7B 520416411 C G C G 3 synonymous_variant LOW transcript non_Triplet 520416388 520418403 2016 3 0.148809523809524 RFvsST 228811538 750603674 521792137 no 109.870207622928 TraesCS7B01G285700 chr7B_520417597 chr7B 520417597 T C T C 3 missense_variant MODERATE transcript non_Triplet 520416388 520418403 2016 3 0.148809523809524 RFvsST 228811538 750603674 521792137 no 109.870207622928 TraesCS7B01G285700 chr7B_520416423 chr7B 520416423 C A C A 3 synonymous_variant LOW transcript non_Triplet 520416388 520418403 2016 3 0.148809523809524 RFvsST 228811538 750603674 521792137 no 109.870207622928 TraesCS7B01G286200 chr7B_521572294 chr7B 521572294 G A G A 3 synonymous_variant LOW transcript unique_Triplet 521566896 521572336 5441 3 0.0551369233596765 RFvsST 228811538 750603674 521792137 no 9.70017077368695 TraesCS7B01G286200 chr7B_521566668 chr7B 521566668 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 521566896 521572336 5441 3 0.0551369233596765 RFvsST 228811538 750603674 521792137 no 9.70017077368695 TraesCS7B01G286200 chr7B_521570245 chr7B 521570245 T C T C 3 synonymous_variant LOW transcript unique_Triplet 521566896 521572336 5441 3 0.0551369233596765 RFvsST 228811538 750603674 521792137 no 9.70017077368695 TraesCS7B01G287100 chr7B_522723412 chr7B 522723412 C C T T 4 synonymous_variant LOW transcript unique_Triplet 522719981 522727870 7890 1 0.0126742712294043 RFvsST 228811538 750603674 521792137 no 73.467650736826 TraesCS7B01G287200 chr7B_522813835 chr7B 522813835 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 522814002 522814397 396 3 0.757575757575758 RFvsST 228811538 750603674 521792137 no 178.243735016793 TraesCS7B01G287200 chr7B_522814271 chr7B 522814271 C C G G 4 missense_variant MODERATE transcript unique_Triplet 522814002 522814397 396 3 0.757575757575758 RFvsST 228811538 750603674 521792137 no 178.243735016793 TraesCS7B01G287200 chr7B_522813895 chr7B 522813895 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 522814002 522814397 396 3 0.757575757575758 RFvsST 228811538 750603674 521792137 no 178.243735016793 TraesCS7B01G287500 chr7B_523627527 chr7B 523627527 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 523624467 523627482 3016 5 0.1657824933687 RFvsST 228811538 750603674 521792137 no 86.4174620033628 TraesCS7B01G287500 chr7B_523627432 chr7B 523627432 G G A A 4 synonymous_variant LOW transcript unique_Triplet 523624467 523627482 3016 5 0.1657824933687 RFvsST 228811538 750603674 521792137 no 86.4174620033628 TraesCS7B01G287500 chr7B_523627448 chr7B 523627448 G G A A 4 missense_variant MODERATE transcript unique_Triplet 523624467 523627482 3016 5 0.1657824933687 RFvsST 228811538 750603674 521792137 no 86.4174620033628 TraesCS7B01G287500 chr7B_523624467 chr7B 523624467 C C G G 4 stop_lost&splice_region_variant HIGH transcript unique_Triplet 523624467 523627482 3016 5 0.1657824933687 RFvsST 228811538 750603674 521792137 no 86.4174620033628 TraesCS7B01G287500 chr7B_523624444 chr7B 523624444 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 523624467 523627482 3016 5 0.1657824933687 RFvsST 228811538 750603674 521792137 no 86.4174620033628 TraesCS7B01G287800 chr7B_524035771 chr7B 524035771 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 524031821 524035708 3888 1 0.0257201646090535 RFvsST 228811538 750603674 521792137 no 159.992852795832 TraesCS7B01G287900 chr7B_524038246 chr7B 524038246 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 524036287 524036961 675 1 0.148148148148148 RFvsST 228811538 750603674 521792137 no 12.6080481755703 TraesCS7B01G288000 chr7B_524038668 chr7B 524038668 C C A A 4 missense_variant MODERATE transcript unique_Triplet 524038500 524039036 537 2 0.37243947858473 RFvsST 228811538 750603674 521792137 no 997.575122391655 TraesCS7B01G288000 chr7B_524038667 chr7B 524038667 G G A A 4 missense_variant MODERATE transcript unique_Triplet 524038500 524039036 537 2 0.37243947858473 RFvsST 228811538 750603674 521792137 no 997.575122391655 TraesCS7B01G288100 chr7B_524048435 chr7B 524048435 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 524047175 524048071 897 1 0.111482720178372 RFvsST 228811538 750603674 521792137 no 110.054246199336 TraesCS7B01G289200 chr7B_524886748 chr7B 524886748 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 524886826 524888544 1719 1 0.058173356602676 RFvsST 228811538 750603674 521792137 no 8583.84613166156 TraesCS7B01G289700 chr7B_525135144 chr7B 525135144 G A G A 3 synonymous_variant LOW transcript unique_Triplet 525128541 525135405 6865 1 0.0145666423889294 RFvsST 228811538 750603674 521792137 no 13.1418512146083 TraesCS7B01G291000 chr7B_527612828 chr7B 527612828 A A G G 4 missense_variant MODERATE transcript unique_Triplet 527612612 527632767 20156 1 0.00496130184560429 RFvsST 228811538 750603674 521792137 no 16.4626827211925 TraesCS7B01G291600 chr7B_528406065 chr7B 528406065 C C T T 4 synonymous_variant LOW transcript non_Triplet 528403678 528406543 2866 3 0.104675505931612 RFvsST 228811538 750603674 521792137 no 210.159454320424 TraesCS7B01G291600 chr7B_528403803 chr7B 528403803 G G A A 4 synonymous_variant LOW transcript non_Triplet 528403678 528406543 2866 3 0.104675505931612 RFvsST 228811538 750603674 521792137 no 210.159454320424 TraesCS7B01G291600 chr7B_528403690 chr7B 528403690 T T C C 4 missense_variant MODERATE transcript non_Triplet 528403678 528406543 2866 3 0.104675505931612 RFvsST 228811538 750603674 521792137 no 210.159454320424 TraesCS7B01G291800 chr7B_528752517 chr7B 528752517 A A G G 4 synonymous_variant LOW transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752476 chr7B 528752476 T T A A 4 missense_variant MODERATE transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752276 chr7B 528752276 C C A A 4 missense_variant MODERATE transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752926 chr7B 528752926 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752437 chr7B 528752437 C C T T 4 missense_variant MODERATE transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752700 chr7B 528752700 T T G G 4 synonymous_variant LOW transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528750599 chr7B 528750599 G G A A 4 missense_variant MODERATE transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752644 chr7B 528752644 T T G G 4 missense_variant MODERATE transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291800 chr7B_528752779 chr7B 528752779 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 528747876 528752775 4900 9 0.183673469387755 RFvsST 228811538 750603674 521792137 no 100.726686807992 TraesCS7B01G291900 chr7B_528766770 chr7B 528766770 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 528763235 528767768 4534 1 0.0220555800617556 RFvsST 228811538 750603674 521792137 no 33.2210232667187 TraesCS7B01G292100 chr7B_528863034 chr7B 528863034 G G A A 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862968 chr7B 528862968 G G T T 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862963 chr7B 528862963 A A G G 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862116 chr7B 528862116 T T C C 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862125 chr7B 528862125 C C G G 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528864353 chr7B 528864353 A A G G 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528864552 chr7B 528864552 G G A A 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528863019 chr7B 528863019 A A G G 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862186 chr7B 528862186 T T C C 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528865475 chr7B 528865475 G G T T 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528862871 chr7B 528862871 G G A A 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528865436 chr7B 528865436 T T C C 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528864357 chr7B 528864357 C C T T 4 synonymous_variant LOW transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G292100 chr7B_528865422 chr7B 528865422 T T G G 4 missense_variant MODERATE transcript unique_Triplet 528860712 528865559 4848 14 0.288778877887789 RFvsST 228811538 750603674 521792137 no 142.851603400402 TraesCS7B01G293000 chr7B_529954900 chr7B 529954900 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 529954439 529958573 4135 1 0.0241837968561064 RFvsST 228811538 750603674 521792137 no 123.67950151767 TraesCS7B01G293600 chr7B_530384522 chr7B 530384522 C C T T 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 530383419 530384701 1283 5 0.38971161340608 RFvsST 228811538 750603674 521792137 no 112.29022174244 TraesCS7B01G293600 chr7B_530384452 chr7B 530384452 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 530383419 530384701 1283 5 0.38971161340608 RFvsST 228811538 750603674 521792137 no 112.29022174244 TraesCS7B01G293600 chr7B_530384414 chr7B 530384414 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 530383419 530384701 1283 5 0.38971161340608 RFvsST 228811538 750603674 521792137 no 112.29022174244 TraesCS7B01G293600 chr7B_530384172 chr7B 530384172 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 530383419 530384701 1283 5 0.38971161340608 RFvsST 228811538 750603674 521792137 no 112.29022174244 TraesCS7B01G293600 chr7B_530383815 chr7B 530383815 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 530383419 530384701 1283 5 0.38971161340608 RFvsST 228811538 750603674 521792137 no 112.29022174244 TraesCS7B01G294700 chr7B_531655212 chr7B 531655212 G G A A 4 missense_variant MODERATE transcript non_Triplet 531655199 531656275 1077 1 0.0928505106778087 RFvsST 228811538 750603674 521792137 no 17.9636295655064 TraesCS7B01G294800 chr7B_531656384 chr7B 531656384 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 531658121 531661081 2961 1 0.0337723741979061 RFvsST 228811538 750603674 521792137 no 136.871755270688 TraesCS7B01G296400 chr7B_532663749 chr7B 532663749 A A T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 532663838 532671024 7187 2 0.0278280228189787 RFvsST 228811538 750603674 521792137 no 545.822758564591 TraesCS7B01G296400 chr7B_532670895 chr7B 532670895 C C G G 4 missense_variant MODERATE transcript unique_Triplet 532663838 532671024 7187 2 0.0278280228189787 RFvsST 228811538 750603674 521792137 no 545.822758564591 TraesCS7B01G302000 chr7B_538864097 chr7B 538864097 A A G G 4 missense_variant MODERATE transcript unique_Triplet 538864067 538864690 624 1 0.16025641025641 RFvsST 228811538 750603674 521792137 no 220.531749827609 TraesCS7B01G305600 chr7B_547551227 chr7B 547551227 G G A A 4 intron_variant MODIFIER transcript non_Triplet 547549601 547567672 18072 1 0.00553342186808322 RFvsST 228811538 750603674 521792137 no 4.24584177746887 TraesCS7B01G315600 chr7B_564173184 chr7B 564173184 A A G G 4 missense_variant MODERATE transcript non_Triplet 564172347 564173663 1317 1 0.0759301442672741 RFvsST 228811538 750603674 521792137 no 351.35517945846 TraesCS7B01G323300 chr7B_574470236 chr7B 574470236 A G A G 3 missense_variant MODERATE transcript non_Triplet 574469213 574470327 1115 1 0.0896860986547085 RFvsST 228811538 750603674 521792137 no 19.8379917038176 TraesCS7B01G323600 chr7B_575367285 chr7B 575367285 G C G C 3 missense_variant MODERATE transcript nonUnique_Triplet 575366843 575373216 6374 2 0.0313774709758393 RFvsST 228811538 750603674 521792137 no 90.4546698049361 TraesCS7B01G323600 chr7B_575367631 chr7B 575367631 A G A G 3 synonymous_variant LOW transcript nonUnique_Triplet 575366843 575373216 6374 2 0.0313774709758393 RFvsST 228811538 750603674 521792137 no 90.4546698049361 TraesCS7B01G323700 chr7B_575377157 chr7B 575377157 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 575376613 575383306 6694 1 0.0149387511204063 RFvsST 228811538 750603674 521792137 no 57.9932959990038 TraesCS7B01G323900 chr7B_575475638 chr7B 575475638 C G C G 3 missense_variant MODERATE transcript non_Triplet 575474478 575475699 1222 2 0.16366612111293 RFvsST 228811538 750603674 521792137 no 166.009125522476 TraesCS7B01G323900 chr7B_575475675 chr7B 575475675 G A G A 3 missense_variant MODERATE transcript non_Triplet 575474478 575475699 1222 2 0.16366612111293 RFvsST 228811538 750603674 521792137 no 166.009125522476 TraesCS7B01G327600 chr7B_581794702 chr7B 581794702 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 581795185 581796382 1198 5 0.417362270450751 RFvsST 228811538 750603674 521792137 no 47.9221750207626 TraesCS7B01G327600 chr7B_581795466 chr7B 581795466 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 581795185 581796382 1198 5 0.417362270450751 RFvsST 228811538 750603674 521792137 no 47.9221750207626 TraesCS7B01G327600 chr7B_581796000 chr7B 581796000 G C G C 3 synonymous_variant LOW transcript unique_Triplet 581795185 581796382 1198 5 0.417362270450751 RFvsST 228811538 750603674 521792137 no 47.9221750207626 TraesCS7B01G327600 chr7B_581796120 chr7B 581796120 G A G A 3 synonymous_variant LOW transcript unique_Triplet 581795185 581796382 1198 5 0.417362270450751 RFvsST 228811538 750603674 521792137 no 47.9221750207626 TraesCS7B01G327600 chr7B_581795502 chr7B 581795502 C G C G 3 missense_variant MODERATE transcript unique_Triplet 581795185 581796382 1198 5 0.417362270450751 RFvsST 228811538 750603674 521792137 no 47.9221750207626 TraesCS7B01G328400 chr7B_583382666 chr7B 583382666 G A G A 3 missense_variant MODERATE transcript non_Triplet 583382193 583384990 2798 1 0.0357398141529664 RFvsST 228811538 750603674 521792137 no 64.987198696451 TraesCS7B01G328700 chr7B_583923163 chr7B 583923163 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 583923203 583926659 3457 5 0.144634075788256 RFvsST 228811538 750603674 521792137 no 124.30286856598 TraesCS7B01G328700 chr7B_583926620 chr7B 583926620 T C T C 3 synonymous_variant LOW transcript unique_Triplet 583923203 583926659 3457 5 0.144634075788256 RFvsST 228811538 750603674 521792137 no 124.30286856598 TraesCS7B01G328700 chr7B_583923230 chr7B 583923230 C G C G 3 missense_variant MODERATE transcript unique_Triplet 583923203 583926659 3457 5 0.144634075788256 RFvsST 228811538 750603674 521792137 no 124.30286856598 TraesCS7B01G328700 chr7B_583926422 chr7B 583926422 C T C T 3 synonymous_variant LOW transcript unique_Triplet 583923203 583926659 3457 5 0.144634075788256 RFvsST 228811538 750603674 521792137 no 124.30286856598 TraesCS7B01G328700 chr7B_583926683 chr7B 583926683 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 583923203 583926659 3457 5 0.144634075788256 RFvsST 228811538 750603674 521792137 no 124.30286856598 TraesCS7B01G329000 chr7B_584035860 chr7B 584035860 C G C G 3 synonymous_variant LOW transcript non_Triplet 584034732 584037009 2278 4 0.175592625109745 RFvsST 228811538 750603674 521792137 no 203.587067228202 TraesCS7B01G329000 chr7B_584035552 chr7B 584035552 T C T C 3 missense_variant MODERATE transcript non_Triplet 584034732 584037009 2278 4 0.175592625109745 RFvsST 228811538 750603674 521792137 no 203.587067228202 TraesCS7B01G329000 chr7B_584035744 chr7B 584035744 C T C T 3 missense_variant MODERATE transcript non_Triplet 584034732 584037009 2278 4 0.175592625109745 RFvsST 228811538 750603674 521792137 no 203.587067228202 TraesCS7B01G329000 chr7B_584035506 chr7B 584035506 C G C G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 584034732 584037009 2278 4 0.175592625109745 RFvsST 228811538 750603674 521792137 no 203.587067228202 TraesCS7B01G329500 chr7B_584311745 chr7B 584311745 A G A G 3 missense_variant MODERATE transcript unique_Triplet 584311720 584312726 1007 2 0.198609731876862 RFvsST 228811538 750603674 521792137 no 312.534993449419 TraesCS7B01G329500 chr7B_584311729 chr7B 584311729 C T C T 3 missense_variant MODERATE transcript unique_Triplet 584311720 584312726 1007 2 0.198609731876862 RFvsST 228811538 750603674 521792137 no 312.534993449419 TraesCS7B01G331000 chr7B_586330949 chr7B 586330949 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 586335423 586337356 1934 2 0.103412616339193 RFvsST 228811538 750603674 521792137 no 15.4415324971408 TraesCS7B01G331000 chr7B_586330715 chr7B 586330715 C A C A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 586335423 586337356 1934 2 0.103412616339193 RFvsST 228811538 750603674 521792137 no 15.4415324971408 TraesCS7B01G331800 chr7B_586967521 chr7B 586967521 G A G A 3 synonymous_variant LOW transcript non_Triplet 586966420 586968144 1725 1 0.0579710144927536 RFvsST 228811538 750603674 521792137 no 45.6595547623966 TraesCS7B01G332200 chr7B_587911496 chr7B 587911496 A T A T 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587912019 chr7B 587912019 G C G C 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911904 chr7B 587911904 G A G A 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911940 chr7B 587911940 G A G A 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911370 chr7B 587911370 T C T C 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911157 chr7B 587911157 T C T C 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911394 chr7B 587911394 A G A G 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332200 chr7B_587911139 chr7B 587911139 A G A G 3 synonymous_variant LOW transcript unique_Triplet 587910189 587912989 2801 8 0.285612281328097 RFvsST 228811538 750603674 521792137 no 192.803833014739 TraesCS7B01G332300 chr7B_587916658 chr7B 587916658 G A G A 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587915467 chr7B 587915467 C T C T 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587915029 chr7B 587915029 C T C T 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587915428 chr7B 587915428 C T C T 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587915386 chr7B 587915386 G A G A 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587916736 chr7B 587916736 A C A C 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587916655 chr7B 587916655 A G A G 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587915044 chr7B 587915044 C G C G 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332300 chr7B_587916820 chr7B 587916820 A G A G 3 synonymous_variant LOW transcript unique_Triplet 587915023 587918057 3035 9 0.296540362438221 RFvsST 228811538 750603674 521792137 no 125.533085642341 TraesCS7B01G332900 chr7B_588288270 chr7B 588288270 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 588285947 588287155 1209 1 0.0827129859387924 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G333000 chr7B_588288633 chr7B 588288633 G T G T 3 synonymous_variant LOW transcript unique_Triplet 588288342 588288647 306 1 0.326797385620915 RFvsST 228811538 750603674 521792137 no 51.7809863335906 TraesCS7B01G333700 chr7B_588879792 chr7B 588879792 G A G A 3 missense_variant MODERATE transcript non_Triplet 588879198 588882893 3696 3 0.0811688311688312 RFvsST 228811538 750603674 521792137 no 78.1722935170404 TraesCS7B01G333700 chr7B_588879683 chr7B 588879683 T A T A 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 588879198 588882893 3696 3 0.0811688311688312 RFvsST 228811538 750603674 521792137 no 78.1722935170404 TraesCS7B01G333700 chr7B_588881539 chr7B 588881539 C T C T 3 missense_variant MODERATE transcript non_Triplet 588879198 588882893 3696 3 0.0811688311688312 RFvsST 228811538 750603674 521792137 no 78.1722935170404 TraesCS7B01G334100 chr7B_589463308 chr7B 589463308 A G A G 3 synonymous_variant LOW transcript unique_Triplet 589462800 589467972 5173 1 0.01933114247052 RFvsST 228811538 750603674 521792137 no 46.3107980405686 TraesCS7B01G338900 chr7B_593187999 chr7B 593187999 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 593185327 593187993 2667 5 0.187476565429321 RFvsST 228811538 750603674 521792137 no 22.0786653404091 TraesCS7B01G338900 chr7B_593185935 chr7B 593185935 T T G G 4 synonymous_variant LOW transcript non_Triplet 593185327 593187993 2667 5 0.187476565429321 RFvsST 228811538 750603674 521792137 no 22.0786653404091 TraesCS7B01G338900 chr7B_593185558 chr7B 593185558 T T C C 4 synonymous_variant LOW transcript non_Triplet 593185327 593187993 2667 5 0.187476565429321 RFvsST 228811538 750603674 521792137 no 22.0786653404091 TraesCS7B01G338900 chr7B_593187995 chr7B 593187995 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 593185327 593187993 2667 5 0.187476565429321 RFvsST 228811538 750603674 521792137 no 22.0786653404091 TraesCS7B01G338900 chr7B_593185579 chr7B 593185579 A A G G 4 synonymous_variant LOW transcript non_Triplet 593185327 593187993 2667 5 0.187476565429321 RFvsST 228811538 750603674 521792137 no 22.0786653404091 TraesCS7B01G339200 chr7B_593411578 chr7B 593411578 A A G G 4 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593412747 chr7B 593412747 T T A A 4 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593412084 chr7B 593412084 C T C T 3 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593411838 chr7B 593411838 G A G A 3 synonymous_variant LOW transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593412611 chr7B 593412611 T C T C 3 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593411785 chr7B 593411785 C A C A 3 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593411572 chr7B 593411572 A T A T 3 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593416025 chr7B 593416025 C C G G 4 missense_variant MODERATE transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339200 chr7B_593412903 chr7B 593412903 G G A A 4 synonymous_variant LOW transcript non_Triplet 593411520 593416531 5012 9 0.179569034317638 RFvsST 228811538 750603674 521792137 no 223.656564415313 TraesCS7B01G339300 chr7B_593640022 chr7B 593640022 A A G G 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593640067 chr7B 593640067 G G A A 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593639956 chr7B 593639956 C C T T 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593641375 chr7B 593641375 G G T T 4 missense_variant MODERATE transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593639860 chr7B 593639860 T T A A 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593639854 chr7B 593639854 T T C C 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593639958 chr7B 593639958 T T A A 4 missense_variant MODERATE transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593640082 chr7B 593640082 A A G G 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593642260 chr7B 593642260 G G A A 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593640029 chr7B 593640029 T T C C 4 missense_variant MODERATE transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593639795 chr7B 593639795 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593642047 chr7B 593642047 C C A A 4 missense_variant MODERATE transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593641315 chr7B 593641315 G G A A 4 synonymous_variant LOW transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G339300 chr7B_593642295 chr7B 593642295 T T G G 4 missense_variant MODERATE transcript unique_Triplet 593639507 593646523 7017 14 0.19951546244834 RFvsST 228811538 750603674 521792137 no 134.818341886814 TraesCS7B01G340100 chr7B_594414053 chr7B 594414053 T T G G 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594414056 chr7B 594414056 A A G G 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594414389 chr7B 594414389 C C G G 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594416866 chr7B 594416866 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594413510 chr7B 594413510 A A G G 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594414035 chr7B 594414035 G G T T 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594411138 chr7B 594411138 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340100 chr7B_594411392 chr7B 594411392 C C T T 4 synonymous_variant LOW transcript unique_Triplet 594411317 594414826 3510 8 0.227920227920228 RFvsST 228811538 750603674 521792137 no 319.209657151722 TraesCS7B01G340200 chr7B_594417000 chr7B 594417000 C C G G 4 synonymous_variant LOW transcript unique_Triplet 594416970 594422088 5119 1 0.0195350654424692 RFvsST 228811538 750603674 521792137 no 19.3091372024289 TraesCS7B01G348600 chr7B_605447135 chr7B 605447135 C C T T 4 synonymous_variant LOW transcript unique_Triplet 605446108 605451405 5298 2 0.0377500943752359 RFvsST 228811538 750603674 521792137 no 406.452903829669 TraesCS7B01G348600 chr7B_605446262 chr7B 605446262 C C G G 4 synonymous_variant LOW transcript unique_Triplet 605446108 605451405 5298 2 0.0377500943752359 RFvsST 228811538 750603674 521792137 no 406.452903829669 TraesCS7B01G349100 chr7B_605956395 chr7B 605956395 C C T T 4 missense_variant MODERATE transcript non_Triplet 605954808 605957482 2675 1 0.0373831775700935 RFvsST 228811538 750603674 521792137 no 347.582273465061 TraesCS7B01G352100 chr7B_608716486 chr7B 608716486 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 608713908 608719965 6058 2 0.0330141961043249 RFvsST 228811538 750603674 521792137 no 62.1288891071853 TraesCS7B01G352100 chr7B_608719588 chr7B 608719588 T A T A 3 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 608713908 608719965 6058 2 0.0330141961043249 RFvsST 228811538 750603674 521792137 no 62.1288891071853 TraesCS7B01G352400 chr7B_608906688 chr7B 608906688 T T G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 608900534 608902492 1959 3 0.153139356814701 RFvsST 228811538 750603674 521792137 no 8.54794841498248 TraesCS7B01G352400 chr7B_608907465 chr7B 608907465 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 608900534 608902492 1959 3 0.153139356814701 RFvsST 228811538 750603674 521792137 no 8.54794841498248 TraesCS7B01G352400 chr7B_608907331 chr7B 608907331 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 608900534 608902492 1959 3 0.153139356814701 RFvsST 228811538 750603674 521792137 no 8.54794841498248 TraesCS7B01G352500 chr7B_608915170 chr7B 608915170 G A G A 3 synonymous_variant LOW transcript unique_Triplet 608913792 608915931 2140 2 0.0934579439252337 RFvsST 228811538 750603674 521792137 no 257.415652249378 TraesCS7B01G352500 chr7B_608915410 chr7B 608915410 G A G A 3 synonymous_variant LOW transcript unique_Triplet 608913792 608915931 2140 2 0.0934579439252337 RFvsST 228811538 750603674 521792137 no 257.415652249378 TraesCS7B01G353600 chr7B_611556058 chr7B 611556058 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611553892 chr7B 611553892 C G C G 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554426 chr7B 611554426 G A G A 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611556041 chr7B 611556041 T G T G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554432 chr7B 611554432 C G C G 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554441 chr7B 611554441 T C T C 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554423 chr7B 611554423 G A G A 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611556015 chr7B 611556015 A G A G 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554042 chr7B 611554042 G C G C 3 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611555993 chr7B 611555993 T C T C 3 missense_variant MODERATE transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554123 chr7B 611554123 G A G A 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353600 chr7B_611554195 chr7B 611554195 G A G A 3 synonymous_variant LOW transcript unique_Triplet 611553823 611556036 2214 12 0.5420054200542 RFvsST 228811538 750603674 521792137 no 134.095951424085 TraesCS7B01G353900 chr7B_611718180 chr7B 611718180 C T C T 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611718273 chr7B 611718273 T A T A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611720654 chr7B 611720654 T A T A 3 synonymous_variant LOW transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611718324 chr7B 611718324 G A G A 3 5_prime_UTR_variant MODIFIER transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611719165 chr7B 611719165 T G T G 3 missense_variant MODERATE transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611719265 chr7B 611719265 A G A G 3 missense_variant MODERATE transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G353900 chr7B_611721359 chr7B 611721359 C A C A 3 missense_variant MODERATE transcript unique_Triplet 611718053 611721993 3941 7 0.177619893428064 RFvsST 228811538 750603674 521792137 no 79.8515698324753 TraesCS7B01G354000 chr7B_611742944 chr7B 611742944 G C G C 3 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 611729773 611742359 12587 1 0.00794470485421467 RFvsST 228811538 750603674 521792137 no 1620.01796920034 TraesCS7B01G358300 chr7B_620594257 chr7B 620594257 G G A A 4 missense_variant MODERATE transcript non_Triplet 620592197 620601067 8871 1 0.0112726862811408 RFvsST 228811538 750603674 521792137 no 65.4680836887388 TraesCS7B01G359900 chr7B_622411369 chr7B 622411369 G C G C 3 missense_variant MODERATE transcript non_Triplet 622411196 622411540 345 1 0.289855072463768 RFvsST 228811538 750603674 521792137 no 69.5160229491185 TraesCS7B01G363200 chr7B_625716792 chr7B 625716792 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 625716352 625721066 4715 1 0.0212089077412513 RFvsST 228811538 750603674 521792137 no 84.1469189022202 TraesCS7B01G363600 chr7B_626070761 chr7B 626070761 A A G G 4 synonymous_variant LOW transcript unique_Triplet 626068550 626072626 4077 5 0.122639195486878 RFvsST 228811538 750603674 521792137 no 134.602406725487 TraesCS7B01G363600 chr7B_626070563 chr7B 626070563 G A G A 3 synonymous_variant LOW transcript unique_Triplet 626068550 626072626 4077 5 0.122639195486878 RFvsST 228811538 750603674 521792137 no 134.602406725487 TraesCS7B01G363600 chr7B_626071600 chr7B 626071600 C C T T 4 synonymous_variant LOW transcript unique_Triplet 626068550 626072626 4077 5 0.122639195486878 RFvsST 228811538 750603674 521792137 no 134.602406725487 TraesCS7B01G363600 chr7B_626068707 chr7B 626068707 T T C C 4 missense_variant MODERATE transcript unique_Triplet 626068550 626072626 4077 5 0.122639195486878 RFvsST 228811538 750603674 521792137 no 134.602406725487 TraesCS7B01G363600 chr7B_626070117 chr7B 626070117 T T C C 4 missense_variant MODERATE transcript unique_Triplet 626068550 626072626 4077 5 0.122639195486878 RFvsST 228811538 750603674 521792137 no 134.602406725487 TraesCS7B01G363700 chr7B_626113390 chr7B 626113390 A A T T 4 missense_variant MODERATE transcript unique_Triplet 626111823 626114383 2561 1 0.0390472471690746 RFvsST 228811538 750603674 521792137 no 12.6926630709331 TraesCS7B01G363900 chr7B_626239239 chr7B 626239239 C C T T 4 synonymous_variant LOW transcript unique_Triplet 626239143 626242744 3602 4 0.111049416990561 RFvsST 228811538 750603674 521792137 no 77.8912245818525 TraesCS7B01G363900 chr7B_626239224 chr7B 626239224 A A G G 4 synonymous_variant LOW transcript unique_Triplet 626239143 626242744 3602 4 0.111049416990561 RFvsST 228811538 750603674 521792137 no 77.8912245818525 TraesCS7B01G363900 chr7B_626239307 chr7B 626239307 C C A A 4 missense_variant MODERATE transcript unique_Triplet 626239143 626242744 3602 4 0.111049416990561 RFvsST 228811538 750603674 521792137 no 77.8912245818525 TraesCS7B01G363900 chr7B_626241019 chr7B 626241019 G G A A 4 synonymous_variant LOW transcript unique_Triplet 626239143 626242744 3602 4 0.111049416990561 RFvsST 228811538 750603674 521792137 no 77.8912245818525 TraesCS7B01G364200 chr7B_627054924 chr7B 627054924 A A G G 4 missense_variant MODERATE transcript non_Triplet 627054839 627055180 342 1 0.292397660818713 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G364800 chr7B_627986710 chr7B 627986710 A A C C 4 synonymous_variant LOW transcript unique_Triplet 627982874 627987179 4306 4 0.0928936367858802 RFvsST 228811538 750603674 521792137 no 133.200929798768 TraesCS7B01G364800 chr7B_627982838 chr7B 627982838 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 627982874 627987179 4306 4 0.0928936367858802 RFvsST 228811538 750603674 521792137 no 133.200929798768 TraesCS7B01G364800 chr7B_627984267 chr7B 627984267 A A C C 4 missense_variant MODERATE transcript unique_Triplet 627982874 627987179 4306 4 0.0928936367858802 RFvsST 228811538 750603674 521792137 no 133.200929798768 TraesCS7B01G364800 chr7B_627982714 chr7B 627982714 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 627982874 627987179 4306 4 0.0928936367858802 RFvsST 228811538 750603674 521792137 no 133.200929798768 TraesCS7B01G365100 chr7B_628469431 chr7B 628469431 G T G T 3 synonymous_variant LOW transcript non_Triplet 628466026 628469622 3597 2 0.0556018904642758 RFvsST 228811538 750603674 521792137 no 578.613319803155 TraesCS7B01G365100 chr7B_628469430 chr7B 628469430 C A C A 3 missense_variant MODERATE transcript non_Triplet 628466026 628469622 3597 2 0.0556018904642758 RFvsST 228811538 750603674 521792137 no 578.613319803155 TraesCS7B01G365800 chr7B_629782237 chr7B 629782237 T T A A 4 missense_variant MODERATE transcript unique_Triplet 629779345 629783728 4384 1 0.0228102189781022 RFvsST 228811538 750603674 521792137 no 130.202161917807 TraesCS7B01G370800 chr7B_636625373 chr7B 636625373 A A G G 4 synonymous_variant LOW transcript unique_Triplet 636625334 636627607 2274 4 0.175901495162709 RFvsST 228811538 750603674 521792137 no 26.0239027707806 TraesCS7B01G370800 chr7B_636627146 chr7B 636627146 G G A A 4 synonymous_variant LOW transcript unique_Triplet 636625334 636627607 2274 4 0.175901495162709 RFvsST 228811538 750603674 521792137 no 26.0239027707806 TraesCS7B01G370800 chr7B_636625295 chr7B 636625295 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 636625334 636627607 2274 4 0.175901495162709 RFvsST 228811538 750603674 521792137 no 26.0239027707806 TraesCS7B01G370800 chr7B_636625320 chr7B 636625320 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 636625334 636627607 2274 4 0.175901495162709 RFvsST 228811538 750603674 521792137 no 26.0239027707806 TraesCS7B01G371900 chr7B_637769268 chr7B 637769268 C C T T 4 missense_variant MODERATE transcript unique_Triplet 637769054 637774747 5694 1 0.0175623463294696 RFvsST 228811538 750603674 521792137 no 47.8103872435535 TraesCS7B01G372400 chr7B_638075295 chr7B 638075295 C C T T 4 synonymous_variant LOW transcript unique_Triplet 638070758 638076955 6198 2 0.0322684737011939 RFvsST 228811538 750603674 521792137 no 21.054718221804 TraesCS7B01G372400 chr7B_638070869 chr7B 638070869 C C T T 4 synonymous_variant LOW transcript unique_Triplet 638070758 638076955 6198 2 0.0322684737011939 RFvsST 228811538 750603674 521792137 no 21.054718221804 TraesCS7B01G372600 chr7B_638488521 chr7B 638488521 C A C A 3 synonymous_variant LOW transcript unique_Triplet 638486689 638488948 2260 4 0.176991150442478 RFvsST 228811538 750603674 521792137 no 5.25778203740538 TraesCS7B01G372600 chr7B_638488536 chr7B 638488536 G T G T 3 synonymous_variant LOW transcript unique_Triplet 638486689 638488948 2260 4 0.176991150442478 RFvsST 228811538 750603674 521792137 no 5.25778203740538 TraesCS7B01G372600 chr7B_638487607 chr7B 638487607 T C T C 3 synonymous_variant LOW transcript unique_Triplet 638486689 638488948 2260 4 0.176991150442478 RFvsST 228811538 750603674 521792137 no 5.25778203740538 TraesCS7B01G372600 chr7B_638487601 chr7B 638487601 G G A A 4 synonymous_variant LOW transcript unique_Triplet 638486689 638488948 2260 4 0.176991150442478 RFvsST 228811538 750603674 521792137 no 5.25778203740538 TraesCS7B01G372700 chr7B_638509689 chr7B 638509689 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 638509625 638515329 5705 1 0.0175284837861525 RFvsST 228811538 750603674 521792137 no 265.789957457391 TraesCS7B01G373000 chr7B_638881488 chr7B 638881488 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 638882526 638885183 2658 2 0.0752445447705041 RFvsST 228811538 750603674 521792137 no 17012.8539996648 TraesCS7B01G373000 chr7B_638881513 chr7B 638881513 C G C G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 638882526 638885183 2658 2 0.0752445447705041 RFvsST 228811538 750603674 521792137 no 17012.8539996648 TraesCS7B01G373100 chr7B_638923900 chr7B 638923900 C G C G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638920588 chr7B 638920588 T G T G 3 missense_variant MODERATE transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638924052 chr7B 638924052 G A G A 3 splice_region_variant&intron_variant LOW transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638924737 chr7B 638924737 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638917894 chr7B 638917894 T G T G 3 missense_variant MODERATE transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638917815 chr7B 638917815 T C T C 3 synonymous_variant LOW transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638917454 chr7B 638917454 A T A T 3 missense_variant MODERATE transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G373100 chr7B_638920604 chr7B 638920604 C T C T 3 synonymous_variant LOW transcript unique_Triplet 638913551 638925111 11561 8 0.0691981662485944 RFvsST 228811538 750603674 521792137 no 250.127796378478 TraesCS7B01G376200 chr7B_641148785 chr7B 641148785 A T A T 3 missense_variant MODERATE transcript unique_Triplet 641148508 641150425 1918 1 0.0521376433785193 RFvsST 228811538 750603674 521792137 no 12.6097833881915 TraesCS7B01G378300 chr7B_642760780 chr7B 642760780 T T C C 4 synonymous_variant LOW transcript non_Triplet 642758465 642761703 3239 2 0.0617474529175671 RFvsST 228811538 750603674 521792137 no 170.284620879925 TraesCS7B01G378300 chr7B_642760776 chr7B 642760776 G G A A 4 missense_variant MODERATE transcript non_Triplet 642758465 642761703 3239 2 0.0617474529175671 RFvsST 228811538 750603674 521792137 no 170.284620879925 TraesCS7B01G381300 chr7B_646072420 chr7B 646072420 T T A A 4 synonymous_variant LOW transcript unique_Triplet 646063963 646074268 10306 4 0.0388123423248593 RFvsST 228811538 750603674 521792137 no 74.9340339368749 TraesCS7B01G381300 chr7B_646074095 chr7B 646074095 G G A A 4 synonymous_variant LOW transcript unique_Triplet 646063963 646074268 10306 4 0.0388123423248593 RFvsST 228811538 750603674 521792137 no 74.9340339368749 TraesCS7B01G381300 chr7B_646073461 chr7B 646073461 T T G G 4 synonymous_variant LOW transcript unique_Triplet 646063963 646074268 10306 4 0.0388123423248593 RFvsST 228811538 750603674 521792137 no 74.9340339368749 TraesCS7B01G381300 chr7B_646073467 chr7B 646073467 C C T T 4 synonymous_variant LOW transcript unique_Triplet 646063963 646074268 10306 4 0.0388123423248593 RFvsST 228811538 750603674 521792137 no 74.9340339368749 TraesCS7B01G381400 chr7B_646209914 chr7B 646209914 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 646209297 646210514 1218 1 0.0821018062397373 RFvsST 228811538 750603674 521792137 no 74.3159525780174 TraesCS7B01G381500 chr7B_646688739 chr7B 646688739 A A C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 646680447 646684221 3775 1 0.0264900662251656 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G381600 chr7B_647001744 chr7B 647001744 T T C C 4 synonymous_variant LOW transcript unique_Triplet 646999012 647002412 3401 2 0.0588062334607468 RFvsST 228811538 750603674 521792137 no 1.77029846039645 TraesCS7B01G381600 chr7B_647002279 chr7B 647002279 A A G G 4 missense_variant MODERATE transcript unique_Triplet 646999012 647002412 3401 2 0.0588062334607468 RFvsST 228811538 750603674 521792137 no 1.77029846039645 TraesCS7B01G381900 chr7B_647132943 chr7B 647132943 C C T T 4 synonymous_variant LOW transcript unique_Triplet 647132572 647133507 936 3 0.32051282051282 RFvsST 228811538 750603674 521792137 no 252.825201045822 TraesCS7B01G381900 chr7B_647133387 chr7B 647133387 G G A A 4 synonymous_variant LOW transcript unique_Triplet 647132572 647133507 936 3 0.32051282051282 RFvsST 228811538 750603674 521792137 no 252.825201045822 TraesCS7B01G381900 chr7B_647133120 chr7B 647133120 G G A A 4 synonymous_variant LOW transcript unique_Triplet 647132572 647133507 936 3 0.32051282051282 RFvsST 228811538 750603674 521792137 no 252.825201045822 TraesCS7B01G382300 chr7B_648107048 chr7B 648107048 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 648104008 648109818 5811 4 0.0688349681638272 RFvsST 228811538 750603674 521792137 no 173.136408291271 TraesCS7B01G382300 chr7B_648107944 chr7B 648107944 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 648104008 648109818 5811 4 0.0688349681638272 RFvsST 228811538 750603674 521792137 no 173.136408291271 TraesCS7B01G382300 chr7B_648108849 chr7B 648108849 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 648104008 648109818 5811 4 0.0688349681638272 RFvsST 228811538 750603674 521792137 no 173.136408291271 TraesCS7B01G382300 chr7B_648105578 chr7B 648105578 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 648104008 648109818 5811 4 0.0688349681638272 RFvsST 228811538 750603674 521792137 no 173.136408291271 TraesCS7B01G383200 chr7B_648917873 chr7B 648917873 A A T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 648916551 648918175 1625 1 0.0615384615384615 RFvsST 228811538 750603674 521792137 no 20.0691282456559 TraesCS7B01G383900 chr7B_649847252 chr7B 649847252 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 649845007 649849620 4614 1 0.0216731686172518 RFvsST 228811538 750603674 521792137 no 957.397026824874 TraesCS7B01G384200 chr7B_650126984 chr7B 650126984 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 650126031 650127017 987 1 0.101317122593718 RFvsST 228811538 750603674 521792137 no 144.45778823407 TraesCS7B01G384300 chr7B_650130699 chr7B 650130699 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 650128138 650130058 1921 1 0.0520562207183758 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G387000 chr7B_653017091 chr7B 653017091 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 653013782 653014234 453 1 0.22075055187638 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G387100 chr7B_653018523 chr7B 653018523 T T C C 4 missense_variant MODERATE transcript non_Triplet 653017377 653021361 3985 1 0.0250941028858218 RFvsST 228811538 750603674 521792137 no 125.835550740829 TraesCS7B01G391300 chr7B_657933068 chr7B 657933068 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 657932922 657934279 1358 1 0.0736377025036819 RFvsST 228811538 750603674 521792137 no 315.769165583531 TraesCS7B01G392900 chr7B_659650398 chr7B 659650398 C C T T 4 synonymous_variant LOW transcript unique_Triplet 659649801 659652918 3118 1 0.032071840923669 RFvsST 228811538 750603674 521792137 no 141.825414391045 TraesCS7B01G393900 chr7B_660650188 chr7B 660650188 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 660650345 660653182 2838 1 0.0352360817477097 RFvsST 228811538 750603674 521792137 no 86.7858420870835 TraesCS7B01G409300 chr7B_678635454 chr7B 678635454 G G A A 4 synonymous_variant LOW transcript unique_Triplet 678635400 678638288 2889 1 0.0346140533056421 RFvsST 228811538 750603674 521792137 no 118.484523666267 TraesCS7B01G411200 chr7B_679930644 chr7B 679930644 G G A A 4 missense_variant MODERATE transcript non_Triplet 679929226 679930983 1758 1 0.0568828213879408 RFvsST 228811538 750603674 521792137 no 122.748752169909 TraesCS7B01G414200 chr7B_682238868 chr7B 682238868 G T G T 3 stop_gained HIGH transcript unique_Triplet 682237765 682241680 3916 1 0.0255362614913177 RFvsST 228811538 750603674 521792137 no 116.279566193046 TraesCS7B01G414700 chr7B_682743924 chr7B 682743924 G G T T 4 missense_variant MODERATE transcript non_Triplet 682743684 682744595 912 1 0.109649122807018 RFvsST 228811538 750603674 521792137 no 105.913911267629 TraesCS7B01G415900 chr7B_683418936 chr7B 683418936 A A G G 4 synonymous_variant LOW transcript non_Triplet 683417661 683419733 2073 2 0.0964785335262904 RFvsST 228811538 750603674 521792137 no 161.324794721979 TraesCS7B01G415900 chr7B_683419671 chr7B 683419671 A A G G 4 synonymous_variant LOW transcript non_Triplet 683417661 683419733 2073 2 0.0964785335262904 RFvsST 228811538 750603674 521792137 no 161.324794721979 TraesCS7B01G416100 chr7B_683512419 chr7B 683512419 C C T T 4 synonymous_variant LOW transcript unique_Triplet 683511871 683514633 2763 3 0.1085776330076 RFvsST 228811538 750603674 521792137 no 195.128975407198 TraesCS7B01G416100 chr7B_683511787 chr7B 683511787 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 683511871 683514633 2763 3 0.1085776330076 RFvsST 228811538 750603674 521792137 no 195.128975407198 TraesCS7B01G416100 chr7B_683514252 chr7B 683514252 G G A A 4 synonymous_variant LOW transcript unique_Triplet 683511871 683514633 2763 3 0.1085776330076 RFvsST 228811538 750603674 521792137 no 195.128975407198 TraesCS7B01G418800 chr7B_687103777 chr7B 687103777 G G T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 687102177 687103530 1354 1 0.0738552437223043 RFvsST 228811538 750603674 521792137 no 114.485971001329 TraesCS7B01G420700 chr7B_690014142 chr7B 690014142 G A G A 3 missense_variant MODERATE transcript non_Triplet 690012885 690016976 4092 3 0.0733137829912024 RFvsST 228811538 750603674 521792137 no 337.953558962941 TraesCS7B01G420700 chr7B_690013234 chr7B 690013234 A C A C 3 missense_variant MODERATE transcript non_Triplet 690012885 690016976 4092 3 0.0733137829912024 RFvsST 228811538 750603674 521792137 no 337.953558962941 TraesCS7B01G420700 chr7B_690013152 chr7B 690013152 C A C A 3 missense_variant MODERATE transcript non_Triplet 690012885 690016976 4092 3 0.0733137829912024 RFvsST 228811538 750603674 521792137 no 337.953558962941 TraesCS7B01G421100 chr7B_690240311 chr7B 690240311 T G T G 3 synonymous_variant LOW transcript non_Triplet 690239172 690240703 1532 1 0.0652741514360313 RFvsST 228811538 750603674 521792137 no 59.5153960202004 TraesCS7B01G430600 chr7B_699139846 chr7B 699139846 C A C A 3 synonymous_variant LOW transcript nonUnique_Triplet 699139585 699142635 3051 1 0.0327761389708292 RFvsST 228811538 750603674 521792137 no 316.668513400224 TraesCS7B01G430800 chr7B_699185319 chr7B 699185319 G G C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 699180503 699182336 1834 1 0.054525627044711 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G430900 chr7B_699188762 chr7B 699188762 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 699190038 699194649 4612 5 0.108412836079792 RFvsST 228811538 750603674 521792137 no 64.9919332989606 TraesCS7B01G430900 chr7B_699190397 chr7B 699190397 A A G G 4 synonymous_variant LOW transcript non_Triplet 699190038 699194649 4612 5 0.108412836079792 RFvsST 228811538 750603674 521792137 no 64.9919332989606 TraesCS7B01G430900 chr7B_699193134 chr7B 699193134 T T C C 4 synonymous_variant LOW transcript non_Triplet 699190038 699194649 4612 5 0.108412836079792 RFvsST 228811538 750603674 521792137 no 64.9919332989606 TraesCS7B01G430900 chr7B_699189315 chr7B 699189315 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 699190038 699194649 4612 5 0.108412836079792 RFvsST 228811538 750603674 521792137 no 64.9919332989606 TraesCS7B01G430900 chr7B_699193314 chr7B 699193314 C C T T 4 synonymous_variant LOW transcript non_Triplet 699190038 699194649 4612 5 0.108412836079792 RFvsST 228811538 750603674 521792137 no 64.9919332989606 TraesCS7B01G431100 chr7B_699380129 chr7B 699380129 A A G G 4 synonymous_variant LOW transcript unique_Triplet 699374202 699382648 8447 1 0.0118385225523855 RFvsST 228811538 750603674 521792137 no 230.341344938594 TraesCS7B01G431500 chr7B_699837385 chr7B 699837385 G G A A 4 missense_variant MODERATE transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699838471 chr7B 699838471 C C T T 4 synonymous_variant LOW transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699837482 chr7B 699837482 G G A A 4 synonymous_variant LOW transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699823314 chr7B 699823314 T T C C 4 synonymous_variant LOW transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699838624 chr7B 699838624 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699838468 chr7B 699838468 A A G G 4 synonymous_variant LOW transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699823962 chr7B 699823962 A A G G 4 missense_variant MODERATE transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431500 chr7B_699837470 chr7B 699837470 A A T T 4 synonymous_variant LOW transcript non_Triplet 699821699 699838597 16899 8 0.0473400792946328 RFvsST 228811538 750603674 521792137 no 173.783829779463 TraesCS7B01G431600 chr7B_699842330 chr7B 699842330 G G A A 4 synonymous_variant LOW transcript unique_Triplet 699840115 699843145 3031 4 0.131969646981194 RFvsST 228811538 750603674 521792137 no 223.907278998964 TraesCS7B01G431600 chr7B_699843139 chr7B 699843139 T T A A 4 missense_variant MODERATE transcript unique_Triplet 699840115 699843145 3031 4 0.131969646981194 RFvsST 228811538 750603674 521792137 no 223.907278998964 TraesCS7B01G431600 chr7B_699842660 chr7B 699842660 C C T T 4 synonymous_variant LOW transcript unique_Triplet 699840115 699843145 3031 4 0.131969646981194 RFvsST 228811538 750603674 521792137 no 223.907278998964 TraesCS7B01G431600 chr7B_699843076 chr7B 699843076 G G A A 4 missense_variant MODERATE transcript unique_Triplet 699840115 699843145 3031 4 0.131969646981194 RFvsST 228811538 750603674 521792137 no 223.907278998964 TraesCS7B01G432900 chr7B_700578799 chr7B 700578799 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 700570538 700578535 7998 1 0.0125031257814454 RFvsST 228811538 750603674 521792137 no 11.7271221654405 TraesCS7B01G433300 chr7B_700814042 chr7B 700814042 C A C A 3 synonymous_variant LOW transcript unique_Triplet 700813977 700818599 4623 4 0.0865239022279905 RFvsST 228811538 750603674 521792137 no 110.445855092311 TraesCS7B01G433300 chr7B_700813935 chr7B 700813935 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 700813977 700818599 4623 4 0.0865239022279905 RFvsST 228811538 750603674 521792137 no 110.445855092311 TraesCS7B01G433300 chr7B_700813966 chr7B 700813966 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 700813977 700818599 4623 4 0.0865239022279905 RFvsST 228811538 750603674 521792137 no 110.445855092311 TraesCS7B01G433300 chr7B_700818624 chr7B 700818624 A G A G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 700813977 700818599 4623 4 0.0865239022279905 RFvsST 228811538 750603674 521792137 no 110.445855092311 TraesCS7B01G433400 chr7B_700827456 chr7B 700827456 C T C T 3 synonymous_variant LOW transcript unique_Triplet 700826956 700828431 1476 2 0.13550135501355 RFvsST 228811538 750603674 521792137 no 129.95303394608 TraesCS7B01G433400 chr7B_700827651 chr7B 700827651 C T C T 3 synonymous_variant LOW transcript unique_Triplet 700826956 700828431 1476 2 0.13550135501355 RFvsST 228811538 750603674 521792137 no 129.95303394608 TraesCS7B01G433700 chr7B_701175333 chr7B 701175333 G A G A 3 synonymous_variant LOW transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701172376 chr7B 701172376 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701172675 chr7B 701172675 T G T G 3 missense_variant MODERATE transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701178131 chr7B 701178131 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701178119 chr7B 701178119 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701175320 chr7B 701175320 T C T C 3 missense_variant MODERATE transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701177129 chr7B 701177129 A G A G 3 synonymous_variant LOW transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433700 chr7B_701173660 chr7B 701173660 T A T A 3 synonymous_variant LOW transcript unique_Triplet 701172481 701178105 5625 8 0.142222222222222 RFvsST 228811538 750603674 521792137 no 102.338726852407 TraesCS7B01G433800 chr7B_701186186 chr7B 701186186 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 701186493 701190776 4284 1 0.0233426704014939 RFvsST 228811538 750603674 521792137 no 6870.73681684276 TraesCS7B01G434300 chr7B_701339832 chr7B 701339832 A G A G 3 missense_variant MODERATE transcript unique_Triplet 701332302 701339971 7670 4 0.0521512385919166 RFvsST 228811538 750603674 521792137 no 415.476741913937 TraesCS7B01G434300 chr7B_701338623 chr7B 701338623 T G T G 3 missense_variant MODERATE transcript unique_Triplet 701332302 701339971 7670 4 0.0521512385919166 RFvsST 228811538 750603674 521792137 no 415.476741913937 TraesCS7B01G434300 chr7B_701339801 chr7B 701339801 T C T C 3 synonymous_variant LOW transcript unique_Triplet 701332302 701339971 7670 4 0.0521512385919166 RFvsST 228811538 750603674 521792137 no 415.476741913937 TraesCS7B01G434300 chr7B_701338127 chr7B 701338127 T G T G 3 synonymous_variant LOW transcript unique_Triplet 701332302 701339971 7670 4 0.0521512385919166 RFvsST 228811538 750603674 521792137 no 415.476741913937 TraesCS7B01G434400 chr7B_701407966 chr7B 701407966 C C A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 701407556 701409856 2301 1 0.0434593654932638 RFvsST 228811538 750603674 521792137 no 168.989335957382 TraesCS7B01G434700 chr7B_701869796 chr7B 701869796 G A G A 3 missense_variant MODERATE transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G434700 chr7B_701870264 chr7B 701870264 C T C T 3 missense_variant MODERATE transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G434700 chr7B_701870580 chr7B 701870580 C T C T 3 missense_variant MODERATE transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G434700 chr7B_701869849 chr7B 701869849 C G C G 3 synonymous_variant LOW transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G434700 chr7B_701870645 chr7B 701870645 G T G T 3 missense_variant MODERATE transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G434700 chr7B_701869919 chr7B 701869919 A G A G 3 missense_variant MODERATE transcript unique_Triplet 701869229 701872159 2931 6 0.204708290685773 RFvsST 228811538 750603674 521792137 no 323.430694017894 TraesCS7B01G441700 chr7B_706811886 chr7B 706811886 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 706811641 706816642 5002 1 0.0199920031987205 RFvsST 228811538 750603674 521792137 no 1146.39320293539 TraesCS7B01G442100 chr7B_706862005 chr7B 706862005 C T C T 3 missense_variant MODERATE transcript unique_Triplet 706856964 706863020 6057 1 0.0165098233448902 RFvsST 228811538 750603674 521792137 no 941.524778331396 TraesCS7B01G443400 chr7B_708110669 chr7B 708110669 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 708108470 708110027 1558 2 0.128369704749679 RFvsST 228811538 750603674 521792137 no 61.5848880416607 TraesCS7B01G443400 chr7B_708110809 chr7B 708110809 C C G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 708108470 708110027 1558 2 0.128369704749679 RFvsST 228811538 750603674 521792137 no 61.5848880416607 TraesCS7B01G443500 chr7B_708115366 chr7B 708115366 G A G A 3 synonymous_variant LOW transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708111101 chr7B 708111101 C A C A 3 missense_variant MODERATE transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708117269 chr7B 708117269 G G T T 4 missense_variant MODERATE transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708117223 chr7B 708117223 G G A A 4 synonymous_variant LOW transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708111265 chr7B 708111265 A A G G 4 synonymous_variant LOW transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708114916 chr7B 708114916 G G A A 4 synonymous_variant LOW transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708118865 chr7B 708118865 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708111067 chr7B 708111067 C C T T 4 synonymous_variant LOW transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708111066 chr7B 708111066 T C T C 3 missense_variant MODERATE transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443500 chr7B_708115359 chr7B 708115359 C T C T 3 missense_variant MODERATE transcript unique_Triplet 708110944 708118407 7464 10 0.133976420150054 RFvsST 228811538 750603674 521792137 no 587.565332833234 TraesCS7B01G443700 chr7B_708477628 chr7B 708477628 C G C G 3 missense_variant MODERATE transcript non_Triplet 708475956 708481142 5187 2 0.0385579332947754 RFvsST 228811538 750603674 521792137 no 330.666104595105 TraesCS7B01G443700 chr7B_708477621 chr7B 708477621 T A T A 3 missense_variant MODERATE transcript non_Triplet 708475956 708481142 5187 2 0.0385579332947754 RFvsST 228811538 750603674 521792137 no 330.666104595105 TraesCS7B01G444300 chr7B_708916200 chr7B 708916200 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 708912542 708913825 1284 1 0.0778816199376947 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G444400 chr7B_708916841 chr7B 708916841 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 708916402 708916815 414 1 0.241545893719807 RFvsST 228811538 750603674 521792137 no 341.875160761044 TraesCS7B01G445300 chr7B_709199261 chr7B 709199261 A G A G 3 synonymous_variant LOW transcript non_Triplet 709194618 709199796 5179 5 0.0965437343116432 RFvsST 228811538 750603674 521792137 no 115.024374136297 TraesCS7B01G445300 chr7B_709198300 chr7B 709198300 C G C G 3 synonymous_variant LOW transcript non_Triplet 709194618 709199796 5179 5 0.0965437343116432 RFvsST 228811538 750603674 521792137 no 115.024374136297 TraesCS7B01G445300 chr7B_709199137 chr7B 709199137 A G A G 3 missense_variant MODERATE transcript non_Triplet 709194618 709199796 5179 5 0.0965437343116432 RFvsST 228811538 750603674 521792137 no 115.024374136297 TraesCS7B01G445300 chr7B_709194875 chr7B 709194875 G A G A 3 synonymous_variant LOW transcript non_Triplet 709194618 709199796 5179 5 0.0965437343116432 RFvsST 228811538 750603674 521792137 no 115.024374136297 TraesCS7B01G445300 chr7B_709198337 chr7B 709198337 C A C A 3 missense_variant MODERATE transcript non_Triplet 709194618 709199796 5179 5 0.0965437343116432 RFvsST 228811538 750603674 521792137 no 115.024374136297 TraesCS7B01G445400 chr7B_709248489 chr7B 709248489 G A G A 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709252244 chr7B 709252244 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709246309 chr7B 709246309 T G T G 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709250722 chr7B 709250722 G T G T 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709245296 chr7B 709245296 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709245805 chr7B 709245805 G C G C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709248472 chr7B 709248472 G T G T 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709248019 chr7B 709248019 T G T G 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709246352 chr7B 709246352 G A G A 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709251313 chr7B 709251313 A C A C 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709248229 chr7B 709248229 T A T A 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709251344 chr7B 709251344 T C T C 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709247641 chr7B 709247641 G A G A 3 missense_variant MODERATE transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709245785 chr7B 709245785 A G A G 3 upstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709245262 chr7B 709245262 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709247759 chr7B 709247759 T C T C 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709250997 chr7B 709250997 T C T C 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709252293 chr7B 709252293 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445400 chr7B_709247570 chr7B 709247570 A G A G 3 synonymous_variant LOW transcript unique_Triplet 709246123 709251419 5297 19 0.358693600151029 RFvsST 228811538 750603674 521792137 no 106.441563680791 TraesCS7B01G445500 chr7B_709256015 chr7B 709256015 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 709258543 709259316 774 4 0.516795865633075 RFvsST 228811538 750603674 521792137 no 779.792518431467 TraesCS7B01G445500 chr7B_709256139 chr7B 709256139 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 709258543 709259316 774 4 0.516795865633075 RFvsST 228811538 750603674 521792137 no 779.792518431467 TraesCS7B01G445500 chr7B_709256260 chr7B 709256260 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 709258543 709259316 774 4 0.516795865633075 RFvsST 228811538 750603674 521792137 no 779.792518431467 TraesCS7B01G445500 chr7B_709258845 chr7B 709258845 C T C T 3 synonymous_variant LOW transcript non_Triplet 709258543 709259316 774 4 0.516795865633075 RFvsST 228811538 750603674 521792137 no 779.792518431467 TraesCS7B01G445600 chr7B_709323454 chr7B 709323454 A A G G 4 missense_variant MODERATE transcript non_Triplet 709323276 709323692 417 3 0.719424460431655 RFvsST 228811538 750603674 521792137 no 326.429727341871 TraesCS7B01G445600 chr7B_709323426 chr7B 709323426 G A G A 3 missense_variant MODERATE transcript non_Triplet 709323276 709323692 417 3 0.719424460431655 RFvsST 228811538 750603674 521792137 no 326.429727341871 TraesCS7B01G445600 chr7B_709323260 chr7B 709323260 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 709323276 709323692 417 3 0.719424460431655 RFvsST 228811538 750603674 521792137 no 326.429727341871 TraesCS7B01G445700 chr7B_709378409 chr7B 709378409 C C T T 4 synonymous_variant LOW transcript non_Triplet 709378179 709378598 420 3 0.714285714285714 RFvsST 228811538 750603674 521792137 no 779.212616607278 TraesCS7B01G445700 chr7B_709378433 chr7B 709378433 G G A A 4 synonymous_variant LOW transcript non_Triplet 709378179 709378598 420 3 0.714285714285714 RFvsST 228811538 750603674 521792137 no 779.212616607278 TraesCS7B01G445700 chr7B_709378209 chr7B 709378209 G G C C 4 missense_variant MODERATE transcript non_Triplet 709378179 709378598 420 3 0.714285714285714 RFvsST 228811538 750603674 521792137 no 779.212616607278 TraesCS7B01G446000 chr7B_709468767 chr7B 709468767 C A C A 3 synonymous_variant LOW transcript non_Triplet 709468338 709469074 737 1 0.135685210312076 RFvsST 228811538 750603674 521792137 no 97.2984206924543 TraesCS7B01G446400 chr7B_709526920 chr7B 709526920 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 709520209 709522006 1798 5 0.278086763070078 RFvsST 228811538 750603674 521792137 no 6.85118824893215 TraesCS7B01G446400 chr7B_709526852 chr7B 709526852 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 709520209 709522006 1798 5 0.278086763070078 RFvsST 228811538 750603674 521792137 no 6.85118824893215 TraesCS7B01G446400 chr7B_709526836 chr7B 709526836 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 709520209 709522006 1798 5 0.278086763070078 RFvsST 228811538 750603674 521792137 no 6.85118824893215 TraesCS7B01G446400 chr7B_709526851 chr7B 709526851 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 709520209 709522006 1798 5 0.278086763070078 RFvsST 228811538 750603674 521792137 no 6.85118824893215 TraesCS7B01G446400 chr7B_709526838 chr7B 709526838 C C G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 709520209 709522006 1798 5 0.278086763070078 RFvsST 228811538 750603674 521792137 no 6.85118824893215 TraesCS7B01G446900 chr7B_709610375 chr7B 709610375 T C T C 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709612530 chr7B 709612530 C T G T,G 6 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709610845 chr7B 709610845 G A G A 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709610396 chr7B 709610396 T C T C 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709610723 chr7B 709610723 A G A G 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709612272 chr7B 709612272 A G A G 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G446900 chr7B_709608699 chr7B 709608699 C A C A 3 synonymous_variant LOW transcript unique_Triplet 709608585 709613542 4958 7 0.141185962081484 RFvsST 228811538 750603674 521792137 no 1345.23257515663 TraesCS7B01G447900 chr7B_710991151 chr7B 710991151 T C T C 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990632 chr7B 710990632 C G C G 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990968 chr7B 710990968 C C T T 4 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990932 chr7B 710990932 C G C G 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990746 chr7B 710990746 C G C G 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990719 chr7B 710990719 G G C C 4 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710992962 chr7B 710992962 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990884 chr7B 710990884 T C T C 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990806 chr7B 710990806 C C G G 4 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710991334 chr7B 710991334 C C G G 4 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G447900 chr7B_710990893 chr7B 710990893 G C G C 3 synonymous_variant LOW transcript unique_Triplet 710990122 710993383 3262 11 0.337216431637032 RFvsST 228811538 750603674 521792137 no 311.100018052666 TraesCS7B01G450000 chr7B_712082946 chr7B 712082946 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 712077912 712080329 2418 1 0.0413564929693962 RFvsST 228811538 750603674 521792137 no 2.81510813965238 TraesCS7B01G450600 chr7B_712618644 chr7B 712618644 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 712615244 712618886 3643 1 0.0274499039253363 RFvsST 228811538 750603674 521792137 no 84.7333636086828 TraesCS7B01G452400 chr7B_713664550 chr7B 713664550 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 713662115 713664396 2282 2 0.0876424189307625 RFvsST 228811538 750603674 521792137 no 56.1067607147333 TraesCS7B01G452400 chr7B_713661972 chr7B 713661972 G G C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 713662115 713664396 2282 2 0.0876424189307625 RFvsST 228811538 750603674 521792137 no 56.1067607147333 TraesCS7B01G455300 chr7B_716041317 chr7B 716041317 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 716041325 716042437 1113 2 0.179694519317161 RFvsST 228811538 750603674 521792137 no 127.917779153386 TraesCS7B01G455300 chr7B_716041568 chr7B 716041568 G C G C 3 missense_variant MODERATE transcript unique_Triplet 716041325 716042437 1113 2 0.179694519317161 RFvsST 228811538 750603674 521792137 no 127.917779153386 TraesCS7B01G455500 chr7B_716264565 chr7B 716264565 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264637 chr7B 716264637 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716262630 chr7B 716262630 A G A G 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264715 chr7B 716264715 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716262603 chr7B 716262603 T C T C 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264391 chr7B 716264391 T C T C 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264379 chr7B 716264379 T C T C 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716262645 chr7B 716262645 T C T C 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716262609 chr7B 716262609 A G A G 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264361 chr7B 716264361 T C T C 3 synonymous_variant LOW transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264792 chr7B 716264792 C A C A 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264654 chr7B 716264654 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264785 chr7B 716264785 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716263704 chr7B 716263704 G C G C 3 missense_variant MODERATE transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716260633 chr7B 716260633 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G455500 chr7B_716264703 chr7B 716264703 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 716261930 716264550 2621 16 0.610454025181229 RFvsST 228811538 750603674 521792137 no 410.069722772265 TraesCS7B01G458700 chr7B_716966321 chr7B 716966321 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 716957969 716966179 8211 2 0.0243575691146024 RFvsST 228811538 750603674 521792137 no 48.3002935237396 TraesCS7B01G458700 chr7B_716958100 chr7B 716958100 C T C T 3 synonymous_variant LOW transcript non_Triplet 716957969 716966179 8211 2 0.0243575691146024 RFvsST 228811538 750603674 521792137 no 48.3002935237396 TraesCS7B01G459700 chr7B_717549439 chr7B 717549439 T C T C 3 downstream_gene_variant MODIFIER transcript non_Triplet 717547346 717565044 17699 1 0.00565003672523871 RFvsST 228811538 750603674 521792137 no 3.71453581676644 TraesCS7B01G460900 chr7B_718357242 chr7B 718357242 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359419 chr7B 718359419 T G T G 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718356878 chr7B 718356878 A G A G 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359395 chr7B 718359395 C T C T 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718357335 chr7B 718357335 A G A G 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718357119 chr7B 718357119 C T C T 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359275 chr7B 718359275 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718361595 chr7B 718361595 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718356761 chr7B 718356761 A T A T 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358792 chr7B 718358792 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718356614 chr7B 718356614 G A G A 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358549 chr7B 718358549 G A G A 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358591 chr7B 718358591 C T C T 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359257 chr7B 718359257 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718361598 chr7B 718361598 A G A G 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359215 chr7B 718359215 C T C T 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358318 chr7B 718358318 T A T A 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358965 chr7B 718358965 C T C T 3 missense_variant MODERATE transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718358864 chr7B 718358864 G C G C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G460900 chr7B_718359134 chr7B 718359134 T C T C 3 synonymous_variant LOW transcript unique_Triplet 718356279 718367286 11008 20 0.181686046511628 RFvsST 228811538 750603674 521792137 no 676.295693533846 TraesCS7B01G461100 chr7B_718467475 chr7B 718467475 T G T G 3 missense_variant MODERATE transcript unique_Triplet 718466919 718471352 4434 3 0.06765899864682 RFvsST 228811538 750603674 521792137 no 168.799414971901 TraesCS7B01G461100 chr7B_718471477 chr7B 718471477 T G T G 3 downstream_gene_variant MODIFIER transcript unique_Triplet 718466919 718471352 4434 3 0.06765899864682 RFvsST 228811538 750603674 521792137 no 168.799414971901 TraesCS7B01G461100 chr7B_718467913 chr7B 718467913 C T C T 3 synonymous_variant LOW transcript unique_Triplet 718466919 718471352 4434 3 0.06765899864682 RFvsST 228811538 750603674 521792137 no 168.799414971901 TraesCS7B01G462300 chr7B_719147230 chr7B 719147230 G C G C 3 missense_variant MODERATE transcript non_Triplet 719146531 719147356 826 1 0.121065375302663 RFvsST 228811538 750603674 521792137 no 30.531962118723 TraesCS7B01G462700 chr7B_719721677 chr7B 719721677 C T C T 3 synonymous_variant LOW transcript non_Triplet 719720578 719722543 1966 1 0.0508646998982706 RFvsST 228811538 750603674 521792137 no 65.5078993005579 TraesCS7B01G463000 chr7B_720068901 chr7B 720068901 A G A G 3 missense_variant MODERATE transcript non_Triplet 720067596 720076035 8440 1 0.0118483412322275 RFvsST 228811538 750603674 521792137 no 97.5138047576254 TraesCS7B01G466300 chr7B_723901991 chr7B 723901991 G T G T 3 missense_variant MODERATE transcript non_Triplet 723900543 723902951 2409 1 0.04151100041511 RFvsST 228811538 750603674 521792137 no 316.338807494017 TraesCS7B01G468100 chr7B_725380459 chr7B 725380459 A A G G 4 synonymous_variant LOW transcript unique_Triplet 725373400 725385130 11731 5 0.0426221123518882 RFvsST 228811538 750603674 521792137 no 385.967269262526 TraesCS7B01G468100 chr7B_725379959 chr7B 725379959 A A C C 4 synonymous_variant LOW transcript unique_Triplet 725373400 725385130 11731 5 0.0426221123518882 RFvsST 228811538 750603674 521792137 no 385.967269262526 TraesCS7B01G468100 chr7B_725374817 chr7B 725374817 T T C C 4 synonymous_variant LOW transcript unique_Triplet 725373400 725385130 11731 5 0.0426221123518882 RFvsST 228811538 750603674 521792137 no 385.967269262526 TraesCS7B01G468100 chr7B_725378917 chr7B 725378917 G G A A 4 synonymous_variant LOW transcript unique_Triplet 725373400 725385130 11731 5 0.0426221123518882 RFvsST 228811538 750603674 521792137 no 385.967269262526 TraesCS7B01G468100 chr7B_725377553 chr7B 725377553 C C T T 4 synonymous_variant LOW transcript unique_Triplet 725373400 725385130 11731 5 0.0426221123518882 RFvsST 228811538 750603674 521792137 no 385.967269262526 TraesCS7B01G469400 chr7B_726138828 chr7B 726138828 A G A G 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 726136352 726139145 2794 3 0.107372942018611 RFvsST 228811538 750603674 521792137 no 186.531525349603 TraesCS7B01G469400 chr7B_726136368 chr7B 726136368 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 726136352 726139145 2794 3 0.107372942018611 RFvsST 228811538 750603674 521792137 no 186.531525349603 TraesCS7B01G469400 chr7B_726138940 chr7B 726138940 T T A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 726136352 726139145 2794 3 0.107372942018611 RFvsST 228811538 750603674 521792137 no 186.531525349603 TraesCS7B01G471600 chr7B_727631743 chr7B 727631743 C C T T 4 synonymous_variant LOW transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G471600 chr7B_727630921 chr7B 727630921 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G471600 chr7B_727630909 chr7B 727630909 T C T C 3 upstream_gene_variant MODIFIER transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G471600 chr7B_727630914 chr7B 727630914 A G A G,C 3 upstream_gene_variant MODIFIER transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G471600 chr7B_727631131 chr7B 727631131 G T G T 3 missense_variant MODERATE transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G471600 chr7B_727631127 chr7B 727631127 A T A T 3 missense_variant MODERATE transcript non_Triplet 727630952 727635099 4148 6 0.144648023143684 RFvsST 228811538 750603674 521792137 no 8363.54391113126 TraesCS7B01G472500 chr7B_728690325 chr7B 728690325 C T C T 3 missense_variant MODERATE transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728690317 chr7B 728690317 T G T G 3 missense_variant MODERATE transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694736 chr7B 728694736 G A G A 3 missense_variant MODERATE transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728693332 chr7B 728693332 A C A C 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694492 chr7B 728694492 G C G C 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694758 chr7B 728694758 C G C G 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728692535 chr7B 728692535 A C A C 3 missense_variant MODERATE transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694361 chr7B 728694361 A G A G 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694319 chr7B 728694319 G A G A 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728691879 chr7B 728691879 A G A G 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728693888 chr7B 728693888 A G A G 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728690455 chr7B 728690455 T C T C 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694316 chr7B 728694316 G C G C 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728692014 chr7B 728692014 T C T C 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728691537 chr7B 728691537 G A G A 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728693900 chr7B 728693900 A G A G 3 synonymous_variant LOW transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472500 chr7B_728694128 chr7B 728694128 A G A G 3 missense_variant&splice_region_variant MODERATE transcript non_Triplet 728689640 728694839 5200 17 0.326923076923077 RFvsST 228811538 750603674 521792137 no 215.581454212647 TraesCS7B01G472600 chr7B_728700316 chr7B 728700316 C C A A 4 missense_variant MODERATE transcript non_Triplet 728699666 728700568 903 4 0.44296788482835 RFvsST 228811538 750603674 521792137 no 158.960039393748 TraesCS7B01G472600 chr7B_728700076 chr7B 728700076 C G C G 3 synonymous_variant LOW transcript non_Triplet 728699666 728700568 903 4 0.44296788482835 RFvsST 228811538 750603674 521792137 no 158.960039393748 TraesCS7B01G472600 chr7B_728700079 chr7B 728700079 C G C G 3 synonymous_variant LOW transcript non_Triplet 728699666 728700568 903 4 0.44296788482835 RFvsST 228811538 750603674 521792137 no 158.960039393748 TraesCS7B01G472600 chr7B_728700777 chr7B 728700777 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 728699666 728700568 903 4 0.44296788482835 RFvsST 228811538 750603674 521792137 no 158.960039393748 TraesCS7B01G472700 chr7B_728808881 chr7B 728808881 G C G C 3 synonymous_variant LOW transcript unique_Triplet 728808663 728812239 3577 3 0.0838691641039978 RFvsST 228811538 750603674 521792137 no 42.2189235939069 TraesCS7B01G472700 chr7B_728808580 chr7B 728808580 G A G A 3 downstream_gene_variant MODIFIER transcript unique_Triplet 728808663 728812239 3577 3 0.0838691641039978 RFvsST 228811538 750603674 521792137 no 42.2189235939069 TraesCS7B01G472700 chr7B_728808680 chr7B 728808680 T C T C 3 missense_variant MODERATE transcript unique_Triplet 728808663 728812239 3577 3 0.0838691641039978 RFvsST 228811538 750603674 521792137 no 42.2189235939069 TraesCS7B01G473400 chr7B_730152518 chr7B 730152518 T G T G 3 missense_variant MODERATE transcript non_Triplet 730149997 730153355 3359 4 0.119083060434653 RFvsST 228811538 750603674 521792137 no 367.449817832651 TraesCS7B01G473400 chr7B_730153395 chr7B 730153395 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 730149997 730153355 3359 4 0.119083060434653 RFvsST 228811538 750603674 521792137 no 367.449817832651 TraesCS7B01G473400 chr7B_730152487 chr7B 730152487 T C T C 3 synonymous_variant LOW transcript non_Triplet 730149997 730153355 3359 4 0.119083060434653 RFvsST 228811538 750603674 521792137 no 367.449817832651 TraesCS7B01G473400 chr7B_730153556 chr7B 730153556 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 730149997 730153355 3359 4 0.119083060434653 RFvsST 228811538 750603674 521792137 no 367.449817832651 TraesCS7B01G473700 chr7B_730181193 chr7B 730181193 T G T G 3 synonymous_variant LOW transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730178642 chr7B 730178642 G C G C 3 downstream_gene_variant MODIFIER transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730178654 chr7B 730178654 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730178907 chr7B 730178907 A G A G 3 synonymous_variant LOW transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730182073 chr7B 730182073 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730179054 chr7B 730179054 G A G A 3 synonymous_variant LOW transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730182145 chr7B 730182145 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730182085 chr7B 730182085 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G473700 chr7B_730178791 chr7B 730178791 C T C T 3 missense_variant MODERATE transcript non_Triplet 730178733 730181982 3250 9 0.276923076923077 RFvsST 228811538 750603674 521792137 no 122.701713852705 TraesCS7B01G474300 chr7B_730398513 chr7B 730398513 C A C A 3 synonymous_variant LOW transcript non_Triplet 730398030 730399766 1737 5 0.287852619458837 RFvsST 228811538 750603674 521792137 no 484.743672702066 TraesCS7B01G474300 chr7B_730398036 chr7B 730398036 T T C C 4 synonymous_variant LOW transcript non_Triplet 730398030 730399766 1737 5 0.287852619458837 RFvsST 228811538 750603674 521792137 no 484.743672702066 TraesCS7B01G474300 chr7B_730399446 chr7B 730399446 G A G A 3 synonymous_variant LOW transcript non_Triplet 730398030 730399766 1737 5 0.287852619458837 RFvsST 228811538 750603674 521792137 no 484.743672702066 TraesCS7B01G474300 chr7B_730398533 chr7B 730398533 C T C T 3 missense_variant MODERATE transcript non_Triplet 730398030 730399766 1737 5 0.287852619458837 RFvsST 228811538 750603674 521792137 no 484.743672702066 TraesCS7B01G474300 chr7B_730399085 chr7B 730399085 C C T T 4 missense_variant MODERATE transcript non_Triplet 730398030 730399766 1737 5 0.287852619458837 RFvsST 228811538 750603674 521792137 no 484.743672702066 TraesCS7B01G474800 chr7B_730909602 chr7B 730909602 C T C T 3 synonymous_variant LOW transcript non_Triplet 730905567 730911530 5964 1 0.0167672702883971 RFvsST 228811538 750603674 521792137 no 3101.67879590818 TraesCS7B01G476700 chr7B_732650183 chr7B 732650183 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 732644150 732646852 2703 2 0.0739918608953015 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G476700 chr7B_732649921 chr7B 732649921 G G A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 732644150 732646852 2703 2 0.0739918608953015 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G476800 chr7B_732651149 chr7B 732651149 A A G G 4 synonymous_variant LOW transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732652249 chr7B 732652249 G G A A 4 synonymous_variant LOW transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732653255 chr7B 732653255 A A C C 4 missense_variant MODERATE transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732656775 chr7B 732656775 A A G G 4 synonymous_variant LOW transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732656353 chr7B 732656353 T T C C 4 missense_variant MODERATE transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732653918 chr7B 732653918 C C T T 4 missense_variant MODERATE transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732657121 chr7B 732657121 G G A A 4 missense_variant MODERATE transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732650459 chr7B 732650459 G G A A 4 synonymous_variant LOW transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732651081 chr7B 732651081 A A G G 4 missense_variant MODERATE transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G476800 chr7B_732656559 chr7B 732656559 C C T T 4 synonymous_variant LOW transcript unique_Triplet 732650222 732658449 8228 10 0.121536217792902 RFvsST 228811538 750603674 521792137 no 690.447622967768 TraesCS7B01G477100 chr7B_733083266 chr7B 733083266 A A G G 4 downstream_gene_variant MODIFIER transcript non_Triplet 733081061 733082673 1613 1 0.0619962802231866 RFvsST 228811538 750603674 521792137 no 50.2758104854157 TraesCS7B01G478200 chr7B_733527479 chr7B 733527479 G G C C 4 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530181 chr7B 733530181 T T C C 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530065 chr7B 733530065 T T C C 4 synonymous_variant LOW transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733529807 chr7B 733529807 G G A A 4 synonymous_variant LOW transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733529123 chr7B 733529123 G G T T 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733527221 chr7B 733527221 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733529217 chr7B 733529217 C C A A 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530128 chr7B 733530128 G G A A 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733529180 chr7B 733529180 G G A A 4 synonymous_variant LOW transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733527378 chr7B 733527378 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733529206 chr7B 733529206 C C T T 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530032 chr7B 733530032 T T G G 4 synonymous_variant LOW transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733527297 chr7B 733527297 T T C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530191 chr7B 733530191 C C T T 4 synonymous_variant LOW transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733527341 chr7B 733527341 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G478200 chr7B_733530127 chr7B 733530127 T T C C 4 missense_variant MODERATE transcript unique_Triplet 733527458 733530221 2764 16 0.578871201157742 RFvsST 228811538 750603674 521792137 no 297.691828748343 TraesCS7B01G480800 chr7B_734407944 chr7B 734407944 A A G G 4 synonymous_variant LOW transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480800 chr7B_734408031 chr7B 734408031 A A C C 4 synonymous_variant LOW transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480800 chr7B_734408109 chr7B 734408109 G G A A 4 synonymous_variant LOW transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480800 chr7B_734407950 chr7B 734407950 A A G G 4 synonymous_variant LOW transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480800 chr7B_734408196 chr7B 734408196 A A C C 4 missense_variant MODERATE transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480800 chr7B_734408013 chr7B 734408013 G G A A 4 synonymous_variant LOW transcript non_Triplet 734407713 734408228 516 6 1.16279069767442 RFvsST 228811538 750603674 521792137 no 57.3217229398767 TraesCS7B01G480900 chr7B_734408319 chr7B 734408319 G G A A 4 synonymous_variant LOW transcript non_Triplet 734407735 734408358 624 1 0.16025641025641 RFvsST 228811538 750603674 521792137 no 57.5023448717495 TraesCS7B01G481100 chr7B_734430627 chr7B 734430627 G A G A 3 missense_variant MODERATE transcript non_Triplet 734430291 734430884 594 1 0.168350168350168 RFvsST 228811538 750603674 521792137 no 64.4711923144063 TraesCS7B01G481600 chr7B_736138685 chr7B 736138685 C C T T 4 synonymous_variant LOW transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481600 chr7B_736138661 chr7B 736138661 A A G G 4 synonymous_variant LOW transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481600 chr7B_736139948 chr7B 736139948 G A G A 3 missense_variant MODERATE transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481600 chr7B_736137749 chr7B 736137749 T T C C 4 synonymous_variant LOW transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481600 chr7B_736139039 chr7B 736139039 A A T T 4 missense_variant MODERATE transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481600 chr7B_736138747 chr7B 736138747 C C A A 4 missense_variant MODERATE transcript non_Triplet 736134956 736142494 7539 6 0.0795861520095503 RFvsST 228811538 750603674 521792137 no 79.3097778371812 TraesCS7B01G481800 chr7B_739383825 chr7B 739383825 A A G G 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384578 chr7B 739384578 C C T T 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739383930 chr7B 739383930 T T G G 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739383916 chr7B 739383916 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739385000 chr7B 739385000 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384248 chr7B 739384248 G G C C 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739385013 chr7B 739385013 C C A A 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384633 chr7B 739384633 G G A A 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739383870 chr7B 739383870 A A C C 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384818 chr7B 739384818 G G A A 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739386031 chr7B 739386031 C C G G 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384773 chr7B 739384773 T T G G 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384629 chr7B 739384629 C C T T 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384934 chr7B 739384934 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384806 chr7B 739384806 C C T T 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739383722 chr7B 739383722 C C T T 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384984 chr7B 739384984 G G A A 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739383802 chr7B 739383802 G G C C 4 missense_variant MODERATE transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G481800 chr7B_739384584 chr7B 739384584 G G A A 4 synonymous_variant LOW transcript unique_Triplet 739382658 739386654 3997 19 0.475356517388041 RFvsST 228811538 750603674 521792137 no 150.823329715679 TraesCS7B01G482200 chr7B_740037918 chr7B 740037918 T T C C 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 740032748 740036881 4134 2 0.0483792936623125 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G482200 chr7B_740037944 chr7B 740037944 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 740032748 740036881 4134 2 0.0483792936623125 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G482300 chr7B_740040989 chr7B 740040989 C C T T 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740041061 chr7B 740041061 C C T T 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740041364 chr7B 740041364 A A C C 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740041025 chr7B 740041025 G G T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039196 chr7B 740039196 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039204 chr7B 740039204 A A C C 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040867 chr7B 740040867 G G C C 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038497 chr7B 740038497 G G A A 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039134 chr7B 740039134 T T A A 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040800 chr7B 740040800 C C T T 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038739 chr7B 740038739 T T C C 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038716 chr7B 740038716 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039132 chr7B 740039132 G G A A 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038836 chr7B 740038836 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038320 chr7B 740038320 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039849 chr7B 740039849 C C T T 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039406 chr7B 740039406 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039043 chr7B 740039043 A A G G 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038353 chr7B 740038353 C C T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040270 chr7B 740040270 G G A A 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039615 chr7B 740039615 G G A A 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040653 chr7B 740040653 C C T T 4 missense_variant MODERATE transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040494 chr7B 740040494 G G T T 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740040720 chr7B 740040720 G G C C 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740039253 chr7B 740039253 A A G G 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038704 chr7B 740038704 G G A A 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482300 chr7B_740038374 chr7B 740038374 T T C C 4 synonymous_variant LOW transcript unique_Triplet 740038137 740041421 3285 27 0.821917808219178 RFvsST 228811538 750603674 521792137 no 567.95163900892 TraesCS7B01G482400 chr7B_740055258 chr7B 740055258 T T C C 4 missense_variant MODERATE transcript unique_Triplet 740048884 740057141 8258 2 0.0242189392104626 RFvsST 228811538 750603674 521792137 no 156.410165865748 TraesCS7B01G482400 chr7B_740054407 chr7B 740054407 G G A A 4 synonymous_variant LOW transcript unique_Triplet 740048884 740057141 8258 2 0.0242189392104626 RFvsST 228811538 750603674 521792137 no 156.410165865748 TraesCS7B01G483000 chr7B_741250096 chr7B 741250096 A C A C 3 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483000 chr7B_741250016 chr7B 741250016 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483000 chr7B_741250157 chr7B 741250157 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483000 chr7B_741249982 chr7B 741249982 A A G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483000 chr7B_741249996 chr7B 741249996 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483000 chr7B_741250102 chr7B 741250102 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 741242637 741246098 3462 6 0.173310225303293 RFvsST 228811538 750603674 521792137 no 4.89071648076499 TraesCS7B01G483100 chr7B_741247787 chr7B 741247787 G A G A 3 missense_variant MODERATE transcript unique_Triplet 741247390 741249665 2276 5 0.219683655536028 RFvsST 228811538 750603674 521792137 no 415.639108727899 TraesCS7B01G483100 chr7B_741247906 chr7B 741247906 C C G G 4 synonymous_variant LOW transcript unique_Triplet 741247390 741249665 2276 5 0.219683655536028 RFvsST 228811538 750603674 521792137 no 415.639108727899 TraesCS7B01G483100 chr7B_741247868 chr7B 741247868 G A G A 3 missense_variant MODERATE transcript unique_Triplet 741247390 741249665 2276 5 0.219683655536028 RFvsST 228811538 750603674 521792137 no 415.639108727899 TraesCS7B01G483100 chr7B_741247870 chr7B 741247870 G A G A 3 synonymous_variant LOW transcript unique_Triplet 741247390 741249665 2276 5 0.219683655536028 RFvsST 228811538 750603674 521792137 no 415.639108727899 TraesCS7B01G483100 chr7B_741247890 chr7B 741247890 T G T G 3 synonymous_variant LOW transcript unique_Triplet 741247390 741249665 2276 5 0.219683655536028 RFvsST 228811538 750603674 521792137 no 415.639108727899 TraesCS7B01G483200 chr7B_741250671 chr7B 741250671 C T C T 3 synonymous_variant LOW transcript non_Triplet 741250188 741250694 507 1 0.19723865877712 RFvsST 228811538 750603674 521792137 no 219.298265729311 TraesCS7B01G483400 chr7B_741353210 chr7B 741353210 C C A A 4 missense_variant MODERATE transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G483400 chr7B_741353319 chr7B 741353319 C C G G 4 synonymous_variant LOW transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G483400 chr7B_741352823 chr7B 741352823 A A G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G483400 chr7B_741353178 chr7B 741353178 C C G G 4 synonymous_variant LOW transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G483400 chr7B_741353198 chr7B 741353198 A A C C 4 missense_variant MODERATE transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G483400 chr7B_741352892 chr7B 741352892 T T C C 4 missense_variant MODERATE transcript unique_Triplet 741352803 741353450 648 6 0.925925925925926 RFvsST 228811538 750603674 521792137 no 66.9705445552146 TraesCS7B01G484300 chr7B_741576120 chr7B 741576120 A A T T 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741574026 chr7B 741574026 G G A A 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741577105 chr7B 741577105 G G A A 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741574624 chr7B 741574624 C C T T 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741577249 chr7B 741577249 A A G G 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741580727 chr7B 741580727 T T A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741577540 chr7B 741577540 A A G G 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741576112 chr7B 741576112 T T C C 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575999 chr7B 741575999 A A G G 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741576998 chr7B 741576998 T T G G 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741580891 chr7B 741580891 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741573987 chr7B 741573987 G G C C 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741580958 chr7B 741580958 A A G G 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741578890 chr7B 741578890 A A G G 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741574657 chr7B 741574657 G G T T 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741576802 chr7B 741576802 C C T T 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741576212 chr7B 741576212 G G C C 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741573889 chr7B 741573889 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575981 chr7B 741575981 C T C T 3 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741574934 chr7B 741574934 G G C C 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741577457 chr7B 741577457 A A G G 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741580892 chr7B 741580892 G G A A 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741580735 chr7B 741580735 C C T T 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575984 chr7B 741575984 A A G G 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741577463 chr7B 741577463 T T C C 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575925 chr7B 741575925 A A C C 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575926 chr7B 741575926 C C T T 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741573933 chr7B 741573933 G G C C 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575785 chr7B 741575785 G G A A 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741578771 chr7B 741578771 C C T T 4 synonymous_variant LOW transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G484300 chr7B_741575813 chr7B 741575813 G G A A 4 missense_variant MODERATE transcript unique_Triplet 741572636 741581953 9318 31 0.332689418330114 RFvsST 228811538 750603674 521792137 no 523.920490833721 TraesCS7B01G486500 chr7B_742463508 chr7B 742463508 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742463535 chr7B 742463535 A A G G 4 downstream_gene_variant MODIFIER transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742463507 chr7B 742463507 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742463458 chr7B 742463458 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742464921 chr7B 742464921 G G T T 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742464077 chr7B 742464077 G G A A 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742464505 chr7B 742464505 G G C C 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742463708 chr7B 742463708 C C A A 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742463720 chr7B 742463720 G A G A 3 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742465213 chr7B 742465213 C C T T 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486500 chr7B_742465535 chr7B 742465535 G G C C 4 synonymous_variant LOW transcript unique_Triplet 742463663 742465738 2076 11 0.529865125240848 RFvsST 228811538 750603674 521792137 no 136.074259656148 TraesCS7B01G486800 chr7B_742591402 chr7B 742591402 T T G G 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742591369 chr7B 742591369 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742591372 chr7B 742591372 G G A A 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742591315 chr7B 742591315 C C T T 4 synonymous_variant LOW transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742591414 chr7B 742591414 T T C C 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742590786 chr7B 742590786 G G A A 4 missense_variant MODERATE transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742590789 chr7B 742590789 T T A A 4 missense_variant MODERATE transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G486800 chr7B_742591455 chr7B 742591455 G A G A 3 3_prime_UTR_variant MODIFIER transcript unique_Triplet 742589095 742591695 2601 8 0.307574009996155 RFvsST 228811538 750603674 521792137 no 71.671290247728 TraesCS7B01G489000 chr7B_743300011 chr7B 743300011 T T C C 4 synonymous_variant LOW transcript unique_Triplet 743299673 743301775 2103 2 0.0951022349025202 RFvsST 228811538 750603674 521792137 no 19.9578513734899 TraesCS7B01G489000 chr7B_743300417 chr7B 743300417 G G A A 4 missense_variant MODERATE transcript unique_Triplet 743299673 743301775 2103 2 0.0951022349025202 RFvsST 228811538 750603674 521792137 no 19.9578513734899 TraesCS7B01G489100 chr7B_743301452 chr7B 743301452 A A G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743303829 chr7B 743303829 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743303775 chr7B 743303775 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743303812 chr7B 743303812 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743303851 chr7B 743303851 G G T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743310456 chr7B 743310456 C C T T 4 missense_variant MODERATE transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743307096 chr7B 743307096 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743302163 chr7B 743302163 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743304167 chr7B 743304167 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743302082 chr7B 743302082 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743304157 chr7B 743304157 C C T T 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489100 chr7B_743302542 chr7B 743302542 C C A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 743305417 743310953 5537 12 0.216723857684667 RFvsST 228811538 750603674 521792137 no 34.6209975911022 TraesCS7B01G489200 chr7B_743383826 chr7B 743383826 G G C C 4 missense_variant MODERATE transcript non_Triplet 743383124 743385871 2748 4 0.145560407569141 RFvsST 228811538 750603674 521792137 no 9.37448530839979 TraesCS7B01G489200 chr7B_743383948 chr7B 743383948 A A G G 4 splice_region_variant&synonymous_variant LOW transcript non_Triplet 743383124 743385871 2748 4 0.145560407569141 RFvsST 228811538 750603674 521792137 no 9.37448530839979 TraesCS7B01G489200 chr7B_743385894 chr7B 743385894 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 743383124 743385871 2748 4 0.145560407569141 RFvsST 228811538 750603674 521792137 no 9.37448530839979 TraesCS7B01G489200 chr7B_743383852 chr7B 743383852 G G C C 4 synonymous_variant LOW transcript non_Triplet 743383124 743385871 2748 4 0.145560407569141 RFvsST 228811538 750603674 521792137 no 9.37448530839979 TraesCS7B01G489300 chr7B_743414245 chr7B 743414245 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 743407759 743411979 4221 1 0.0236910684671879 RFvsST 228811538 750603674 521792137 no 2.81757334521775 TraesCS7B01G489700 chr7B_743617981 chr7B 743617981 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618231 chr7B 743618231 T T C C 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619170 chr7B 743619170 G G A A 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619134 chr7B 743619134 C C T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618333 chr7B 743618333 C G C G 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618306 chr7B 743618306 G A G A 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618020 chr7B 743618020 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618041 chr7B 743618041 G A G A 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619345 chr7B 743619345 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619013 chr7B 743619013 G G A A 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743617730 chr7B 743617730 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618038 chr7B 743618038 T T C C 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743620119 chr7B 743620119 G G A A 4 missense_variant MODERATE transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619861 chr7B 743619861 G G A A 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743617736 chr7B 743617736 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619007 chr7B 743619007 C C G G 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618062 chr7B 743618062 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743620076 chr7B 743620076 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619339 chr7B 743619339 C C T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618056 chr7B 743618056 A A T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618089 chr7B 743618089 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619191 chr7B 743619191 C C T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618315 chr7B 743618315 G A G A 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619444 chr7B 743619444 A A G G 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743618096 chr7B 743618096 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743620060 chr7B 743620060 G G T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489700 chr7B_743619891 chr7B 743619891 C C T T 4 synonymous_variant LOW transcript unique_Triplet 743616728 743620219 3492 27 0.77319587628866 RFvsST 228811538 750603674 521792137 no 33.6545726450229 TraesCS7B01G489800 chr7B_743621894 chr7B 743621894 C T C T 3 synonymous_variant LOW transcript unique_Triplet 743621046 743622769 1724 3 0.174013921113689 RFvsST 228811538 750603674 521792137 no 152.133810565201 TraesCS7B01G489800 chr7B_743621678 chr7B 743621678 C C A A 4 synonymous_variant LOW transcript unique_Triplet 743621046 743622769 1724 3 0.174013921113689 RFvsST 228811538 750603674 521792137 no 152.133810565201 TraesCS7B01G489800 chr7B_743621930 chr7B 743621930 A T A T 3 synonymous_variant LOW transcript unique_Triplet 743621046 743622769 1724 3 0.174013921113689 RFvsST 228811538 750603674 521792137 no 152.133810565201 TraesCS7B01G492100 chr7B_744401544 chr7B 744401544 T T C C 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744402979 chr7B 744402979 C C T T 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744395051 chr7B 744395051 C G C G 3 missense_variant&splice_region_variant MODERATE transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744401909 chr7B 744401909 T T C C 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744402017 chr7B 744402017 A A C C 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744397558 chr7B 744397558 C C T T 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744404071 chr7B 744404071 C C T T 4 missense_variant MODERATE transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744397692 chr7B 744397692 T T C C 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744402787 chr7B 744402787 A A G G 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744403290 chr7B 744403290 C T C T 3 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744402991 chr7B 744402991 T C T C 3 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744402539 chr7B 744402539 C C T T 4 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G492100 chr7B_744404090 chr7B 744404090 A G A G 3 synonymous_variant LOW transcript unique_Triplet 744390501 744404964 14464 13 0.0898783185840708 RFvsST 228811538 750603674 521792137 no 133.10159083835 TraesCS7B01G496900 chr7B_747615266 chr7B 747615266 C T C T 3 synonymous_variant LOW transcript non_Triplet 747614409 747615500 1092 4 0.366300366300366 RFvsST 228811538 750603674 521792137 no 67.3514619789305 TraesCS7B01G496900 chr7B_747614753 chr7B 747614753 G G C C 4 missense_variant MODERATE transcript non_Triplet 747614409 747615500 1092 4 0.366300366300366 RFvsST 228811538 750603674 521792137 no 67.3514619789305 TraesCS7B01G496900 chr7B_747614828 chr7B 747614828 G A G A 3 synonymous_variant LOW transcript non_Triplet 747614409 747615500 1092 4 0.366300366300366 RFvsST 228811538 750603674 521792137 no 67.3514619789305 TraesCS7B01G496900 chr7B_747615217 chr7B 747615217 G G A A 4 stop_gained HIGH transcript non_Triplet 747614409 747615500 1092 4 0.366300366300366 RFvsST 228811538 750603674 521792137 no 67.3514619789305 TraesCS7B01G500200 chr7B_750069769 chr7B 750069769 C C T T 4 synonymous_variant LOW transcript unique_Triplet 750069142 750072169 3028 1 0.0330250990752972 RFvsST 228811538 750603674 521792137 no No_match TraesCS7B01G500300 chr7B_750081935 chr7B 750081935 C C G G 4 missense_variant MODERATE transcript unique_Triplet 750081772 750087841 6070 2 0.0329489291598023 RFvsST 228811538 750603674 521792137 no 79.3353380852029 TraesCS7B01G500300 chr7B_750081976 chr7B 750081976 C C T T 4 missense_variant MODERATE transcript unique_Triplet 750081772 750087841 6070 2 0.0329489291598023 RFvsST 228811538 750603674 521792137 no 79.3353380852029 TraesCS7B01G502100 chr7B_750589908 chr7B 750589908 T T C C 4 synonymous_variant LOW transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750593548 chr7B 750593548 C C A A 4 downstream_gene_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750589085 chr7B 750589085 C C T T 4 synonymous_variant LOW transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750589412 chr7B 750589412 C A C A 3 missense_variant MODERATE transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750589105 chr7B 750589105 C T C T 3 missense_variant MODERATE transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750593435 chr7B 750593435 T C T C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750591878 chr7B 750591878 C C A A 4 intron_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750591409 chr7B 750591409 C C T T 4 intron_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750591388 chr7B 750591388 C C A A 4 missense_variant MODERATE transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750593460 chr7B 750593460 C C T T 4 downstream_gene_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7B01G502100 chr7B_750591875 chr7B 750591875 A C A C 3 intron_variant MODIFIER transcript unique_Triplet 750588134 750593373 5240 11 0.209923664122137 RFvsST 228811538 750603674 521792137 no 18.1101403236926 TraesCS7D01G026600 chr7D_12897661 chr7D 12897661 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 12897777 12904950 7174 2 0.0278784499581823 RFvsST 208426 254867243 254658818 no 154.459558917423 TraesCS7D01G026600 chr7D_12902538 chr7D 12902538 G A G A 3 synonymous_variant LOW transcript non_Triplet 12897777 12904950 7174 2 0.0278784499581823 RFvsST 208426 254867243 254658818 no 154.459558917423 TraesCS7D01G029100 chr7D_14551014 chr7D 14551014 G A G A 3 synonymous_variant LOW transcript non_Triplet 14547880 14552009 4130 2 0.0484261501210654 RFvsST 208426 254867243 254658818 no 7.50316795527561 TraesCS7D01G029100 chr7D_14550987 chr7D 14550987 T A T A 3 synonymous_variant LOW transcript non_Triplet 14547880 14552009 4130 2 0.0484261501210654 RFvsST 208426 254867243 254658818 no 7.50316795527561 TraesCS7D01G036700 chr7D_18692146 chr7D 18692146 T C G G,C 6 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692038 chr7D 18692038 C C T T 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18691807 chr7D 18691807 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692336 chr7D 18692336 G G C C 4 missense_variant MODERATE transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692484 chr7D 18692484 T T C C 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18691753 chr7D 18691753 G G T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18691752 chr7D 18691752 T T C C 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692571 chr7D 18692571 C C G G 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692334 chr7D 18692334 A A T T 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18691712 chr7D 18691712 C C G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692182 chr7D 18692182 A A G G 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G036700 chr7D_18692209 chr7D 18692209 G G T T 4 synonymous_variant LOW transcript non_Triplet 18691439 18695264 3826 12 0.313643491897543 RFvsST 208426 254867243 254658818 no 398.535831354908 TraesCS7D01G080200 chr7D_47403240 chr7D 47403240 A G A G 3 missense_variant MODERATE transcript non_Triplet 47401927 47403465 1539 1 0.0649772579597141 RFvsST 208426 254867243 254658818 no 164.481920001549 TraesCS7D01G080300 chr7D_47419219 chr7D 47419219 G A G A 3 missense_variant MODERATE transcript non_Triplet 47412273 47424077 11805 1 0.00847098686997035 RFvsST 208426 254867243 254658818 no 389.269758540465 TraesCS7D01G089400 chr7D_53989564 chr7D 53989564 C C T T 4 synonymous_variant LOW transcript non_Triplet 53988482 53990508 2027 1 0.0493339911198816 RFvsST 208426 254867243 254658818 no 128.1813055223 TraesCS7D01G101500 chr7D_60599917 chr7D 60599917 G A G A 3 missense_variant MODERATE transcript unique_Triplet 60596211 60602466 6256 1 0.0159846547314578 RFvsST 208426 254867243 254658818 no 26.2501728435802 TraesCS7D01G111900 chr7D_68791640 chr7D 68791640 G C G C 3 downstream_gene_variant MODIFIER transcript unique_Triplet 68793978 68799748 5771 1 0.0173280194073817 RFvsST 208426 254867243 254658818 no No_match TraesCS7D01G116300 chr7D_71546943 chr7D 71546943 T T A A 4 missense_variant MODERATE transcript non_Triplet 71544219 71551833 7615 1 0.0131319763624425 RFvsST 208426 254867243 254658818 no 861.132951019738 TraesCS7D01G117900 chr7D_72947075 chr7D 72947075 G T G T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 72950115 72951978 1864 1 0.0536480686695279 RFvsST 208426 254867243 254658818 no No_match TraesCS7D01G119700 chr7D_74407627 chr7D 74407627 G G A A 4 synonymous_variant LOW transcript unique_Triplet 74407379 74414526 7148 1 0.0139899272523783 RFvsST 208426 254867243 254658818 no 376.166241163712 TraesCS7D01G124400 chr7D_78038902 chr7D 78038902 A A C C 4 synonymous_variant LOW transcript unique_Triplet 78038821 78042015 3195 1 0.0312989045383412 RFvsST 208426 254867243 254658818 no 97.394286878603 TraesCS7D01G144400 chr7D_92239537 chr7D 92239537 G A G A 3 synonymous_variant LOW transcript unique_Triplet 92239147 92242787 3641 1 0.0274649821477616 RFvsST 208426 254867243 254658818 no 239.987880776305 TraesCS7D01G146600 chr7D_93782028 chr7D 93782028 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93785516 93788194 2679 3 0.111982082866741 RFvsST 208426 254867243 254658818 no 83.3237933919654 TraesCS7D01G146600 chr7D_93782126 chr7D 93782126 T A T A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93785516 93788194 2679 3 0.111982082866741 RFvsST 208426 254867243 254658818 no 83.3237933919654 TraesCS7D01G146600 chr7D_93782027 chr7D 93782027 G A G A 3 upstream_gene_variant MODIFIER transcript unique_Triplet 93785516 93788194 2679 3 0.111982082866741 RFvsST 208426 254867243 254658818 no 83.3237933919654 TraesCS7D01G152800 chr7D_101400762 chr7D 101400762 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 101395597 101400935 5339 1 0.0187300992695261 RFvsST 208426 254867243 254658818 no 306.156407209503 TraesCS7D01G153200 chr7D_101580618 chr7D 101580618 G G C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101580657 chr7D 101580657 A A G G 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101581794 chr7D 101581794 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101580956 chr7D 101580956 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101580773 chr7D 101580773 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101581653 chr7D 101581653 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G153200 chr7D_101584148 chr7D 101584148 G G C C 4 missense_variant MODERATE transcript nonUnique_Triplet 101580722 101585530 4809 7 0.145560407569141 RFvsST 208426 254867243 254658818 no 186.795405004794 TraesCS7D01G156400 chr7D_104573419 chr7D 104573419 T T C C 4 missense_variant MODERATE transcript unique_Triplet 104567515 104575449 7935 2 0.0252047889098929 RFvsST 208426 254867243 254658818 no 297.032469715713 TraesCS7D01G156400 chr7D_104568943 chr7D 104568943 C C A A 4 missense_variant MODERATE transcript unique_Triplet 104567515 104575449 7935 2 0.0252047889098929 RFvsST 208426 254867243 254658818 no 297.032469715713 TraesCS7D01G157200 chr7D_104902436 chr7D 104902436 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 104900277 104903224 2948 1 0.033921302578019 RFvsST 208426 254867243 254658818 no 279.840661909051 TraesCS7D01G159000 chr7D_108264402 chr7D 108264402 G A G A 3 intron_variant MODIFIER transcript non_Triplet 108262487 108264485 1999 1 0.0500250125062531 RFvsST 208426 254867243 254658818 no 57.0706826343237 TraesCS7D01G162300 chr7D_112322585 chr7D 112322585 T C T C 3 synonymous_variant LOW transcript nonUnique_Triplet 112322541 112324181 1641 3 0.182815356489945 RFvsST 208426 254867243 254658818 no 33.1673731375056 TraesCS7D01G162300 chr7D_112324085 chr7D 112324085 C G C G 3 synonymous_variant LOW transcript nonUnique_Triplet 112322541 112324181 1641 3 0.182815356489945 RFvsST 208426 254867243 254658818 no 33.1673731375056 TraesCS7D01G162300 chr7D_112324106 chr7D 112324106 C T C T 3 synonymous_variant LOW transcript nonUnique_Triplet 112322541 112324181 1641 3 0.182815356489945 RFvsST 208426 254867243 254658818 no 33.1673731375056 TraesCS7D01G162800 chr7D_112790247 chr7D 112790247 G A G A 3 missense_variant MODERATE transcript unique_Triplet 112789874 112795791 5918 1 0.0168976005407232 RFvsST 208426 254867243 254658818 no 184.305851561517 TraesCS7D01G164100 chr7D_113442729 chr7D 113442729 C C A A 4 missense_variant MODERATE transcript unique_Triplet 113441356 113445415 4060 1 0.0246305418719212 RFvsST 208426 254867243 254658818 no 11.9696377240565 TraesCS7D01G175900 chr7D_127752995 chr7D 127752995 A G A G 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 127752230 127753738 1509 1 0.0662690523525514 RFvsST 208426 254867243 254658818 no 168.36289455517 TraesCS7D01G176600 chr7D_128785556 chr7D 128785556 T T C C 4 missense_variant MODERATE transcript unique_Triplet 128784821 128788531 3711 1 0.0269469145782808 RFvsST 208426 254867243 254658818 no 70.8006823133496 TraesCS7D01G191500 chr7D_146842843 chr7D 146842843 G G C C 4 missense_variant MODERATE transcript unique_Triplet 146836647 146842932 6286 1 0.0159083678014636 RFvsST 208426 254867243 254658818 no 103.850136870845 TraesCS7D01G206700 chr7D_164204283 chr7D 164204283 A A G G 4 missense_variant MODERATE transcript unique_Triplet 164183920 164205382 21463 1 0.00465918091599497 RFvsST 208426 254867243 254658818 no 2379.43217610667 TraesCS7D01G213700 chr7D_173021401 chr7D 173021401 C C G G 4 missense_variant MODERATE transcript non_Triplet 173019099 173023558 4460 1 0.0224215246636771 RFvsST 208426 254867243 254658818 no 75.053230069139 TraesCS7D01G231200 chr7D_192364051 chr7D 192364051 G G A A 4 upstream_gene_variant MODIFIER transcript unique_Triplet 192367131 192369146 2016 1 0.0496031746031746 RFvsST 208426 254867243 254658818 no 568.017942982848 TraesCS7D01G233700 chr7D_195621470 chr7D 195621470 T T C C 4 3_prime_UTR_variant MODIFIER transcript nonUnique_Triplet 195615448 195621482 6035 1 0.0165700082850041 RFvsST 208426 254867243 254658818 no 165.728078726997 TraesCS7D01G236600 chr7D_199563390 chr7D 199563390 A A G G 4 missense_variant MODERATE transcript unique_Triplet 199560954 199563563 2610 1 0.0383141762452107 RFvsST 208426 254867243 254658818 no 223.787660475374 TraesCS7D01G309700 chr7D_393038030 chr7D 393038030 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 393041166 393041543 378 1 0.264550264550265 RFvsST 273855106 460509833 186654728 no No_match TraesCS7D01G313900 chr7D_397989866 chr7D 397989866 G C G C 3 missense_variant MODERATE transcript unique_Triplet 397989773 397996130 6358 1 0.0157282164202579 RFvsST 273855106 460509833 186654728 no 102.885766058856 TraesCS7D01G317400 chr7D_403808117 chr7D 403808117 G G A A 4 missense_variant MODERATE transcript unique_Triplet 403808046 403813156 5111 1 0.0195656427313637 RFvsST 273855106 460509833 186654728 no 461.41097751117 TraesCS7D01G317900 chr7D_404749215 chr7D 404749215 C C T T 4 synonymous_variant LOW transcript non_Triplet 404748495 404751568 3074 1 0.0325309043591412 RFvsST 273855106 460509833 186654728 no 33.0947340621197 TraesCS7D01G319000 chr7D_407849241 chr7D 407849241 C T C T 3 downstream_gene_variant MODIFIER transcript unique_Triplet 407844942 407849104 4163 1 0.0240211386019697 RFvsST 273855106 460509833 186654728 no 150.524282299269 TraesCS7D01G321100 chr7D_411304598 chr7D 411304598 G A G A 3 missense_variant MODERATE transcript unique_Triplet 411302034 411305035 3002 1 0.033311125916056 RFvsST 273855106 460509833 186654728 no 67.0402670412818 TraesCS7D01G385800 chr7D_500244207 chr7D 500244207 G G A A 4 synonymous_variant LOW transcript unique_Triplet 500244175 500253122 8948 1 0.0111756817165847 RFvsST 449774035 638615158 188841124 no 309.551724866781 TraesCS7D01G385900 chr7D_500618128 chr7D 500618128 C C G G 4 missense_variant MODERATE transcript unique_Triplet 500615386 500620465 5080 1 0.0196850393700787 RFvsST 449774035 638615158 188841124 no 101.440001492728 TraesCS7D01G401800 chr7D_518785603 chr7D 518785603 A A C C 4 upstream_gene_variant MODIFIER transcript unique_Triplet 518780212 518783110 2899 1 0.034494653328734 RFvsST 449774035 638615158 188841124 no 56.4288158425388 TraesCS7D01G402500 chr7D_519966733 chr7D 519966733 C C T T 4 missense_variant MODERATE transcript unique_Triplet 519959654 519967615 7962 1 0.0125596583772921 RFvsST 449774035 638615158 188841124 no 393.880639515829 TraesCS7D01G405500 chr7D_523048127 chr7D 523048127 C C T T 4 synonymous_variant LOW transcript unique_Triplet 523045580 523048676 3097 1 0.0322893122376493 RFvsST 449774035 638615158 188841124 no 89.8317803086803 TraesCS7D01G407300 chr7D_524865390 chr7D 524865390 A A C C 4 missense_variant MODERATE transcript unique_Triplet 524863256 524865755 2500 1 0.04 RFvsST 449774035 638615158 188841124 no 11.9482784440176 TraesCS7D01G421700 chr7D_541242754 chr7D 541242754 C G C G 3 upstream_gene_variant MODIFIER transcript non_Triplet 541237930 541242076 4147 1 0.0241138172172655 RFvsST 449774035 638615158 188841124 no 98.4409684136704 TraesCS7D01G429000 chr7D_549123165 chr7D 549123165 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 549122198 549123014 817 1 0.122399020807834 RFvsST 449774035 638615158 188841124 no 1404.45465618979 TraesCS7D01G429100 chr7D_549121935 chr7D 549121935 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 549123742 549124101 360 1 0.277777777777778 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G429600 chr7D_549302341 chr7D 549302341 A G A G 3 synonymous_variant LOW transcript non_Triplet 549302275 549306937 4663 2 0.0428908428050611 RFvsST 449774035 638615158 188841124 no 48.3103064664468 TraesCS7D01G429600 chr7D_549302291 chr7D 549302291 G A G A 3 missense_variant MODERATE transcript non_Triplet 549302275 549306937 4663 2 0.0428908428050611 RFvsST 449774035 638615158 188841124 no 48.3103064664468 TraesCS7D01G430700 chr7D_550097810 chr7D 550097810 T G T G 3 synonymous_variant LOW transcript unique_Triplet 550095530 550099074 3545 1 0.0282087447108604 RFvsST 449774035 638615158 188841124 no 699.085333309578 TraesCS7D01G430800 chr7D_550105092 chr7D 550105092 G A G A 3 synonymous_variant LOW transcript unique_Triplet 550100556 550105854 5299 1 0.0188714851858841 RFvsST 449774035 638615158 188841124 no 151.011716884378 TraesCS7D01G430900 chr7D_550237480 chr7D 550237480 G T G T 3 missense_variant MODERATE transcript non_Triplet 550236942 550237964 1023 4 0.391006842619746 RFvsST 449774035 638615158 188841124 no 144.535492613965 TraesCS7D01G430900 chr7D_550237107 chr7D 550237107 G G A A 4 missense_variant MODERATE transcript non_Triplet 550236942 550237964 1023 4 0.391006842619746 RFvsST 449774035 638615158 188841124 no 144.535492613965 TraesCS7D01G430900 chr7D_550236841 chr7D 550236841 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 550236942 550237964 1023 4 0.391006842619746 RFvsST 449774035 638615158 188841124 no 144.535492613965 TraesCS7D01G430900 chr7D_550236806 chr7D 550236806 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 550236942 550237964 1023 4 0.391006842619746 RFvsST 449774035 638615158 188841124 no 144.535492613965 TraesCS7D01G431500 chr7D_550976105 chr7D 550976105 C T C T 3 missense_variant MODERATE transcript unique_Triplet 550973236 550982119 8884 2 0.0225123818099955 RFvsST 449774035 638615158 188841124 no 125.236173414826 TraesCS7D01G431500 chr7D_550981948 chr7D 550981948 C A C A 3 missense_variant MODERATE transcript unique_Triplet 550973236 550982119 8884 2 0.0225123818099955 RFvsST 449774035 638615158 188841124 no 125.236173414826 TraesCS7D01G437400 chr7D_556639722 chr7D 556639722 G C G C 3 synonymous_variant LOW transcript unique_Triplet 556639563 556641011 1449 1 0.0690131124913734 RFvsST 449774035 638615158 188841124 no 203.219448609729 TraesCS7D01G439800 chr7D_559394044 chr7D 559394044 C G C G 3 synonymous_variant LOW transcript unique_Triplet 559393858 559394262 405 3 0.740740740740741 RFvsST 449774035 638615158 188841124 no 120.462170147932 TraesCS7D01G439800 chr7D_559394041 chr7D 559394041 G C G C 3 synonymous_variant LOW transcript unique_Triplet 559393858 559394262 405 3 0.740740740740741 RFvsST 449774035 638615158 188841124 no 120.462170147932 TraesCS7D01G439800 chr7D_559394095 chr7D 559394095 G C G C 3 synonymous_variant LOW transcript unique_Triplet 559393858 559394262 405 3 0.740740740740741 RFvsST 449774035 638615158 188841124 no 120.462170147932 TraesCS7D01G440500 chr7D_560582580 chr7D 560582580 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 560580320 560580775 456 1 0.219298245614035 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G443100 chr7D_562424433 chr7D 562424433 G T G T 3 intron_variant MODIFIER transcript non_Triplet 562401777 562425958 24182 1 0.00413530725332892 RFvsST 449774035 638615158 188841124 no 1028.65690350288 TraesCS7D01G446100 chr7D_566558196 chr7D 566558196 C C T T 4 synonymous_variant LOW transcript unique_Triplet 566554168 566558428 4261 1 0.0234686693264492 RFvsST 449774035 638615158 188841124 no 48.1975425953431 TraesCS7D01G449300 chr7D_568597875 chr7D 568597875 T T A A 4 synonymous_variant LOW transcript unique_Triplet 568596319 568601195 4877 5 0.102522042239081 RFvsST 449774035 638615158 188841124 no 1378.99250453885 TraesCS7D01G449300 chr7D_568599339 chr7D 568599339 C C T T 4 synonymous_variant LOW transcript unique_Triplet 568596319 568601195 4877 5 0.102522042239081 RFvsST 449774035 638615158 188841124 no 1378.99250453885 TraesCS7D01G449300 chr7D_568599882 chr7D 568599882 G C G C 3 synonymous_variant LOW transcript unique_Triplet 568596319 568601195 4877 5 0.102522042239081 RFvsST 449774035 638615158 188841124 no 1378.99250453885 TraesCS7D01G449300 chr7D_568597769 chr7D 568597769 C C T T 4 5_prime_UTR_premature_start_codon_gain_variant LOW transcript unique_Triplet 568596319 568601195 4877 5 0.102522042239081 RFvsST 449774035 638615158 188841124 no 1378.99250453885 TraesCS7D01G449300 chr7D_568601037 chr7D 568601037 C C T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 568596319 568601195 4877 5 0.102522042239081 RFvsST 449774035 638615158 188841124 no 1378.99250453885 TraesCS7D01G449400 chr7D_568619576 chr7D 568619576 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623962 chr7D 568623962 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623538 chr7D 568623538 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568622912 chr7D 568622912 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623805 chr7D 568623805 C C G G 4 missense_variant MODERATE transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623655 chr7D 568623655 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623470 chr7D 568623470 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623037 chr7D 568623037 C C G G 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449400 chr7D_568623736 chr7D 568623736 G G C C 4 synonymous_variant LOW transcript nonUnique_Triplet 568619309 568624339 5031 9 0.178890876565295 RFvsST 449774035 638615158 188841124 no 357.20079537632 TraesCS7D01G449700 chr7D_568754315 chr7D 568754315 C C G G 4 missense_variant MODERATE transcript unique_Triplet 568749173 568754339 5167 4 0.0774143603638475 RFvsST 449774035 638615158 188841124 no 42.9523097437445 TraesCS7D01G449700 chr7D_568754388 chr7D 568754388 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 568749173 568754339 5167 4 0.0774143603638475 RFvsST 449774035 638615158 188841124 no 42.9523097437445 TraesCS7D01G449700 chr7D_568752546 chr7D 568752546 G G C C 4 synonymous_variant LOW transcript unique_Triplet 568749173 568754339 5167 4 0.0774143603638475 RFvsST 449774035 638615158 188841124 no 42.9523097437445 TraesCS7D01G449700 chr7D_568749817 chr7D 568749817 G G C C 4 missense_variant MODERATE transcript unique_Triplet 568749173 568754339 5167 4 0.0774143603638475 RFvsST 449774035 638615158 188841124 no 42.9523097437445 TraesCS7D01G449900 chr7D_568950319 chr7D 568950319 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568955124 chr7D 568955124 A A G G 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568953760 chr7D 568953760 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568949869 chr7D 568949869 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568951346 chr7D 568951346 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568951086 chr7D 568951086 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G449900 chr7D_568953775 chr7D 568953775 T T G G 4 synonymous_variant LOW transcript nonUnique_Triplet 568949472 568954531 5060 7 0.138339920948617 RFvsST 449774035 638615158 188841124 no 398.267909079085 TraesCS7D01G450100 chr7D_569047575 chr7D 569047575 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 569047722 569052253 4532 4 0.088261253309797 RFvsST 449774035 638615158 188841124 no 69.5496056646701 TraesCS7D01G450100 chr7D_569047911 chr7D 569047911 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 569047722 569052253 4532 4 0.088261253309797 RFvsST 449774035 638615158 188841124 no 69.5496056646701 TraesCS7D01G450100 chr7D_569051262 chr7D 569051262 T T C C 4 synonymous_variant LOW transcript nonUnique_Triplet 569047722 569052253 4532 4 0.088261253309797 RFvsST 449774035 638615158 188841124 no 69.5496056646701 TraesCS7D01G450100 chr7D_569047899 chr7D 569047899 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 569047722 569052253 4532 4 0.088261253309797 RFvsST 449774035 638615158 188841124 no 69.5496056646701 TraesCS7D01G450700 chr7D_570642861 chr7D 570642861 G G A A 4 synonymous_variant LOW transcript unique_Triplet 570640429 570644550 4122 1 0.0242600679281902 RFvsST 449774035 638615158 188841124 no 67.5088327797289 TraesCS7D01G450800 chr7D_570648425 chr7D 570648425 G G A A 4 missense_variant MODERATE transcript unique_Triplet 570647520 570649993 2474 1 0.0404203718674212 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G450900 chr7D_570655325 chr7D 570655325 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570652486 570653499 1014 3 0.29585798816568 RFvsST 449774035 638615158 188841124 no 13.916013992527 TraesCS7D01G450900 chr7D_570655289 chr7D 570655289 G G A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570652486 570653499 1014 3 0.29585798816568 RFvsST 449774035 638615158 188841124 no 13.916013992527 TraesCS7D01G450900 chr7D_570655277 chr7D 570655277 C C A A 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 570652486 570653499 1014 3 0.29585798816568 RFvsST 449774035 638615158 188841124 no 13.916013992527 TraesCS7D01G451000 chr7D_570666313 chr7D 570666313 C C T T 4 splice_acceptor_variant&intron_variant HIGH transcript unique_Triplet 570663808 570667996 4189 3 0.071616137502984 RFvsST 449774035 638615158 188841124 no 88.6532436415186 TraesCS7D01G451000 chr7D_570665966 chr7D 570665966 T T C C 4 missense_variant MODERATE transcript unique_Triplet 570663808 570667996 4189 3 0.071616137502984 RFvsST 449774035 638615158 188841124 no 88.6532436415186 TraesCS7D01G451000 chr7D_570663925 chr7D 570663925 T T C C 4 synonymous_variant LOW transcript unique_Triplet 570663808 570667996 4189 3 0.071616137502984 RFvsST 449774035 638615158 188841124 no 88.6532436415186 TraesCS7D01G451300 chr7D_571197297 chr7D 571197297 A A T T 4 missense_variant MODERATE transcript nonUnique_Triplet 571196210 571198014 1805 4 0.221606648199446 RFvsST 449774035 638615158 188841124 no 145.418503922266 TraesCS7D01G451300 chr7D_571196430 chr7D 571196430 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 571196210 571198014 1805 4 0.221606648199446 RFvsST 449774035 638615158 188841124 no 145.418503922266 TraesCS7D01G451300 chr7D_571198159 chr7D 571198159 A A T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 571196210 571198014 1805 4 0.221606648199446 RFvsST 449774035 638615158 188841124 no 145.418503922266 TraesCS7D01G451300 chr7D_571198143 chr7D 571198143 C C T T 4 upstream_gene_variant MODIFIER transcript nonUnique_Triplet 571196210 571198014 1805 4 0.221606648199446 RFvsST 449774035 638615158 188841124 no 145.418503922266 TraesCS7D01G451400 chr7D_571196149 chr7D 571196149 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 571196226 571196567 342 1 0.292397660818713 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G451500 chr7D_571259742 chr7D 571259742 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571258944 chr7D 571258944 C C A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571264059 chr7D 571264059 A A G G 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571259641 chr7D 571259641 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571258940 chr7D 571258940 T T C C 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571260570 chr7D 571260570 G G A A 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571260299 chr7D 571260299 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571259485 chr7D 571259485 C C T T 4 synonymous_variant LOW transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571260617 chr7D 571260617 T T C C 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571259055 chr7D 571259055 C C T T 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571260388 chr7D 571260388 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571260010 chr7D 571260010 A A G G 4 synonymous_variant LOW transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571259398 chr7D 571259398 C C A A 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571257928 chr7D 571257928 A A T T 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571262676 chr7D 571262676 T T G G 4 missense_variant MODERATE transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451500 chr7D_571257850 chr7D 571257850 G G A A 4 downstream_gene_variant MODIFIER transcript nonUnique_Triplet 571258963 571264788 5826 16 0.274630964641263 RFvsST 449774035 638615158 188841124 no 400.878270535207 TraesCS7D01G451600 chr7D_571271875 chr7D 571271875 C C G G 4 missense_variant MODERATE transcript unique_Triplet 571271814 571274581 2768 1 0.0361271676300578 RFvsST 449774035 638615158 188841124 no 20.3564995067556 TraesCS7D01G451900 chr7D_571716542 chr7D 571716542 G G A A 4 synonymous_variant LOW transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G451900 chr7D_571719982 chr7D 571719982 T T C C 4 5_prime_UTR_variant MODIFIER transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G451900 chr7D_571715728 chr7D 571715728 A A T T 4 3_prime_UTR_variant MODIFIER transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G451900 chr7D_571719185 chr7D 571719185 A A G G 4 synonymous_variant LOW transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G451900 chr7D_571716442 chr7D 571716442 T T C C 4 missense_variant MODERATE transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G451900 chr7D_571719556 chr7D 571719556 A A G G 4 synonymous_variant LOW transcript unique_Triplet 571715632 571720053 4422 6 0.135685210312076 RFvsST 449774035 638615158 188841124 no 141.793175134288 TraesCS7D01G452100 chr7D_571867134 chr7D 571867134 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 571861881 571864859 2979 1 0.0335683115139308 RFvsST 449774035 638615158 188841124 no 22.8962034790351 TraesCS7D01G452200 chr7D_571881368 chr7D 571881368 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 571882057 571885421 3365 5 0.148588410104012 RFvsST 449774035 638615158 188841124 no 335.565785094314 TraesCS7D01G452200 chr7D_571881241 chr7D 571881241 T T A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 571882057 571885421 3365 5 0.148588410104012 RFvsST 449774035 638615158 188841124 no 335.565785094314 TraesCS7D01G452200 chr7D_571885618 chr7D 571885618 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 571882057 571885421 3365 5 0.148588410104012 RFvsST 449774035 638615158 188841124 no 335.565785094314 TraesCS7D01G452200 chr7D_571881549 chr7D 571881549 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 571882057 571885421 3365 5 0.148588410104012 RFvsST 449774035 638615158 188841124 no 335.565785094314 TraesCS7D01G452200 chr7D_571884745 chr7D 571884745 A A C C 4 missense_variant MODERATE transcript non_Triplet 571882057 571885421 3365 5 0.148588410104012 RFvsST 449774035 638615158 188841124 no 335.565785094314 TraesCS7D01G452400 chr7D_571968402 chr7D 571968402 A A C C 4 synonymous_variant LOW transcript non_Triplet 571967881 571971803 3923 1 0.025490695895998 RFvsST 449774035 638615158 188841124 no 194.020394301659 TraesCS7D01G453000 chr7D_572735559 chr7D 572735559 G G C C 4 missense_variant MODERATE transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572732201 chr7D 572732201 A A G G 4 synonymous_variant LOW transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572734739 chr7D 572734739 A A G G 4 missense_variant MODERATE transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572735439 chr7D 572735439 C C T T 4 missense_variant MODERATE transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572732264 chr7D 572732264 G G A A 4 splice_region_variant&synonymous_variant LOW transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572735634 chr7D 572735634 A A G G 4 missense_variant MODERATE transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572732571 chr7D 572732571 G G A A 4 synonymous_variant LOW transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572732508 chr7D 572732508 G G C C 4 missense_variant MODERATE transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453000 chr7D_572735623 chr7D 572735623 G G C C 4 synonymous_variant LOW transcript unique_Triplet 572731367 572735983 4617 9 0.194931773879142 RFvsST 449774035 638615158 188841124 no 136.047477385245 TraesCS7D01G453800 chr7D_573433563 chr7D 573433563 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 573433643 573437035 3393 1 0.0294724432655467 RFvsST 449774035 638615158 188841124 no 11.2845897519674 TraesCS7D01G454200 chr7D_573695043 chr7D 573695043 T T C C 4 downstream_gene_variant MODIFIER transcript unique_Triplet 573692185 573694994 2810 2 0.0711743772241993 RFvsST 449774035 638615158 188841124 no 288.70011807447 TraesCS7D01G454200 chr7D_573694748 chr7D 573694748 G G C C 4 synonymous_variant LOW transcript unique_Triplet 573692185 573694994 2810 2 0.0711743772241993 RFvsST 449774035 638615158 188841124 no 288.70011807447 TraesCS7D01G454500 chr7D_573832903 chr7D 573832903 T T G G 4 upstream_gene_variant MODIFIER transcript unique_Triplet 573826258 573828638 2381 1 0.0419991600167997 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G454700 chr7D_573833251 chr7D 573833251 G G A A 4 synonymous_variant LOW transcript unique_Triplet 573832933 573839205 6273 2 0.0318826717678941 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G454700 chr7D_573837473 chr7D 573837473 A G A G 3 missense_variant MODERATE transcript unique_Triplet 573832933 573839205 6273 2 0.0318826717678941 RFvsST 449774035 638615158 188841124 no No_match TraesCS7D01G465700 chr7D_579760070 chr7D 579760070 T C T C 3 missense_variant MODERATE transcript non_Triplet 579759216 579760925 1710 1 0.0584795321637427 RFvsST 449774035 638615158 188841124 no 79.9746333628501 TraesCS7D01G467100 chr7D_580573394 chr7D 580573394 G G A A 4 synonymous_variant LOW transcript nonUnique_Triplet 580570297 580576187 5891 1 0.0169750466813784 RFvsST 449774035 638615158 188841124 no 189.096043100203 TraesCS7D01G473300 chr7D_586487717 chr7D 586487717 C T C T 3 upstream_gene_variant MODIFIER transcript unique_Triplet 586489590 586492699 3110 1 0.0321543408360129 RFvsST 449774035 638615158 188841124 no 5.99191061465142 TraesCS7D01G491900 chr7D_600874561 chr7D 600874561 C C T T 4 stop_gained HIGH transcript non_Triplet 600873620 600875676 2057 1 0.0486144871171609 RFvsST 449774035 638615158 188841124 no 212.687514080459 TraesCS7D01G516700 chr7D_616068336 chr7D 616068336 G G C C 4 missense_variant MODERATE transcript unique_Triplet 616068180 616068602 423 1 0.236406619385343 RFvsST 449774035 638615158 188841124 no 155.14321205432 TraesCS7D01G519300 chr7D_617197731 chr7D 617197731 G A G A 3 missense_variant MODERATE transcript non_Triplet 617197234 617198736 1503 1 0.0665335994677312 RFvsST 449774035 638615158 188841124 no 16.5498884491056 TraesCS7D01G524300 chr7D_620257868 chr7D 620257868 A G A G 3 synonymous_variant LOW transcript non_Triplet 620256278 620258464 2187 1 0.0457247370827618 RFvsST 449774035 638615158 188841124 no 272.070148245539 TraesCS7D01G526600 chr7D_621971078 chr7D 621971078 G G A A 4 intron_variant MODIFIER transcript non_Triplet 621968812 621973496 4685 1 0.0213447171824973 RFvsST 449774035 638615158 188841124 no 172.140018795834 TraesCS7D01G526800 chr7D_622003513 chr7D 622003513 C C T T 4 synonymous_variant LOW transcript non_Triplet 622002194 622004211 2018 1 0.0495540138751239 RFvsST 449774035 638615158 188841124 no 22.1326875872091 TraesCS2B01G630100 chr2B_801217498 chr2B 801217498 T C T C 3 synonymous_variant LOW transcript unique_Triplet 801216973 801224042 7070 3 0.0424328147100424 RFvsST NA NA NA NA 151.206231883255 TraesCS2B01G630100 chr2B_801217219 chr2B 801217219 C G C G 3 synonymous_variant LOW transcript unique_Triplet 801216973 801224042 7070 3 0.0424328147100424 RFvsST NA NA NA NA 151.206231883255 TraesCS2B01G630100 chr2B_801224106 chr2B 801224106 T C T C 3 upstream_gene_variant MODIFIER transcript unique_Triplet 801216973 801224042 7070 3 0.0424328147100424 RFvsST NA NA NA NA 151.206231883255 TraesCS3B01G612200 chr3B_829541512 chr3B 829541512 G G A A 4 missense_variant MODERATE transcript unique_Triplet 829541507 829542481 975 1 0.102564102564103 RFvsST NA NA NA NA 261.026365960308 TraesCS5B01G572700 chr5B_713015228 chr5B 713015228 C C G G 4 missense_variant MODERATE transcript non_Triplet 713014293 713017573 3281 1 0.0304785126485827 RFvsST NA NA NA NA 60.1431550636393 TraesCS7A01G569900 chr7A_736689161 chr7A 736689161 C T C T 3 missense_variant MODERATE transcript non_Triplet 736689010 736692725 3716 4 0.107642626480086 RFvsST NA NA NA NA 442.938592467119 TraesCS7A01G569900 chr7A_736688998 chr7A 736688998 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 736689010 736692725 3716 4 0.107642626480086 RFvsST NA NA NA NA 442.938592467119 TraesCS7A01G569900 chr7A_736691630 chr7A 736691630 T C T C 3 missense_variant MODERATE transcript non_Triplet 736689010 736692725 3716 4 0.107642626480086 RFvsST NA NA NA NA 442.938592467119 TraesCS7A01G569900 chr7A_736691809 chr7A 736691809 A G A G 3 missense_variant MODERATE transcript non_Triplet 736689010 736692725 3716 4 0.107642626480086 RFvsST NA NA NA NA 442.938592467119 TraesCS7B01G502200 chr7B_750604592 chr7B 750604592 A A G G 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604415 chr7B 750604415 T T C C 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604589 chr7B 750604589 C C T T 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604070 chr7B 750604070 G G A A 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604064 chr7B 750604064 C C A A 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750603817 chr7B 750603817 A A G G 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604410 chr7B 750604410 C T C T 3 missense_variant MODERATE transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604103 chr7B 750604103 G C G C 3 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604094 chr7B 750604094 C T C T 3 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750603824 chr7B 750603824 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604211 chr7B 750604211 G G C C 4 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750603798 chr7B 750603798 G T G T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCS7B01G502200 chr7B_750604358 chr7B 750604358 C T C T 3 synonymous_variant LOW transcript non_Triplet 750603674 750606116 2443 13 0.532132623823168 RFvsST NA NA NA NA 89.5159957042671 TraesCSU01G002200 chrUn_2218169 chrUn 2218169 G A G A 3 synonymous_variant LOW transcript non_Triplet 2217580 2219964 2385 2 0.0838574423480084 RFvsST NA NA NA NA 111.935818049748 TraesCSU01G002200 chrUn_2218517 chrUn 2218517 G A G A 3 synonymous_variant LOW transcript non_Triplet 2217580 2219964 2385 2 0.0838574423480084 RFvsST NA NA NA NA 111.935818049748 TraesCSU01G002300 chrUn_2230047 chrUn 2230047 G A G A 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2224677 chrUn 2224677 G A G A 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2222051 chrUn 2222051 G A G A 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2222803 chrUn 2222803 A G A G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2223290 chrUn 2223290 C G C G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2221443 chrUn 2221443 C T C T 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2223368 chrUn 2223368 G C G C 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2221448 chrUn 2221448 A G A G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2230023 chrUn 2230023 G A G A 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2225682 chrUn 2225682 A G A G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2226749 chrUn 2226749 T C T C 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2224642 chrUn 2224642 C T C T 3 missense_variant MODERATE transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2223284 chrUn 2223284 A G A G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2223470 chrUn 2223470 T C T C 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2222839 chrUn 2222839 G A G A 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G002300 chrUn_2221190 chrUn 2221190 A G A G 3 synonymous_variant LOW transcript non_Triplet 2220450 2231194 10745 16 0.148906468124709 RFvsST NA NA NA NA 457.656904262076 TraesCSU01G005100 chrUn_9332072 chrUn 9332072 G T G T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 9330478 9332108 1631 2 0.122624156958921 RFvsST NA NA NA NA 3947.53034614722 TraesCSU01G005100 chrUn_9332085 chrUn 9332085 T T C C 4 5_prime_UTR_variant MODIFIER transcript non_Triplet 9330478 9332108 1631 2 0.122624156958921 RFvsST NA NA NA NA 3947.53034614722 TraesCSU01G007200 chrUn_11020454 chrUn 11020454 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 11020587 11025019 4433 1 0.0225580870742161 RFvsST NA NA NA NA 66.8683868270344 TraesCSU01G007800 chrUn_11747877 chrUn 11747877 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G007800 chrUn_11747919 chrUn 11747919 T G T G 3 3_prime_UTR_variant MODIFIER transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G007800 chrUn_11745836 chrUn 11745836 G A G A 3 missense_variant MODERATE transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G007800 chrUn_11744856 chrUn 11744856 T T C C 4 synonymous_variant LOW transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G007800 chrUn_11747618 chrUn 11747618 C C T T 4 synonymous_variant LOW transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G007800 chrUn_11746000 chrUn 11746000 G G A A 4 synonymous_variant LOW transcript non_Triplet 11739970 11748040 8071 6 0.0743402304547144 RFvsST NA NA NA NA 141.042912794892 TraesCSU01G019200 chrUn_20837134 chrUn 20837134 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 20838631 20843468 4838 1 0.020669698222406 RFvsST NA NA NA NA 97.531393586502 TraesCSU01G021600 chrUn_23525226 chrUn 23525226 C C A A 4 synonymous_variant LOW transcript non_Triplet 23524464 23525355 892 4 0.448430493273543 RFvsST NA NA NA NA 354.878272802419 TraesCSU01G021600 chrUn_23524526 chrUn 23524526 C C G G 4 synonymous_variant LOW transcript non_Triplet 23524464 23525355 892 4 0.448430493273543 RFvsST NA NA NA NA 354.878272802419 TraesCSU01G021600 chrUn_23524580 chrUn 23524580 G G C C 4 synonymous_variant LOW transcript non_Triplet 23524464 23525355 892 4 0.448430493273543 RFvsST NA NA NA NA 354.878272802419 TraesCSU01G021600 chrUn_23525332 chrUn 23525332 G G A A 4 missense_variant MODERATE transcript non_Triplet 23524464 23525355 892 4 0.448430493273543 RFvsST NA NA NA NA 354.878272802419 TraesCSU01G021700 chrUn_23531962 chrUn 23531962 G A G A 3 missense_variant MODERATE transcript non_Triplet 23530947 23532135 1189 1 0.0841042893187553 RFvsST NA NA NA NA 41.8803897286998 TraesCSU01G021900 chrUn_23676240 chrUn 23676240 G C G C 3 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23676237 chrUn 23676237 C C T T 4 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23678876 chrUn 23678876 T T A A 4 stop_lost&splice_region_variant HIGH transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23679079 chrUn 23679079 C T C T 3 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23676177 chrUn 23676177 T C T C 3 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23675926 chrUn 23675926 C T C T 3 missense_variant MODERATE transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23676636 chrUn 23676636 G G A A 4 missense_variant MODERATE transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23676304 chrUn 23676304 A C A C 3 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23675891 chrUn 23675891 C C T T 4 missense_variant MODERATE transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G021900 chrUn_23676180 chrUn 23676180 C G C G 3 synonymous_variant LOW transcript non_Triplet 23675866 23679244 3379 10 0.295945546019532 RFvsST NA NA NA NA 99.7838870842933 TraesCSU01G023100 chrUn_24264820 chrUn 24264820 G G A A 4 missense_variant MODERATE transcript non_Triplet 24260997 24266104 5108 1 0.0195771339075959 RFvsST NA NA NA NA 374.242414513481 TraesCSU01G023200 chrUn_24304870 chrUn 24304870 T C T C 3 synonymous_variant LOW transcript non_Triplet 24304096 24304986 891 1 0.112233445566779 RFvsST NA NA NA NA 375.635844035973 TraesCSU01G024000 chrUn_24403397 chrUn 24403397 C G C G 3 missense_variant MODERATE transcript non_Triplet 24401845 24404677 2833 1 0.0352982703847511 RFvsST NA NA NA NA 1457.0843797913 TraesCSU01G025800 chrUn_26595460 chrUn 26595460 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 26594245 26595335 1091 1 0.0916590284142988 RFvsST NA NA NA NA 332.66363208039 TraesCSU01G035800 chrUn_30822844 chrUn 30822844 T T G G 4 missense_variant MODERATE transcript non_Triplet 30822790 30825462 2673 1 0.0374111485222596 RFvsST NA NA NA NA 69.6265597399124 TraesCSU01G038400 chrUn_31689443 chrUn 31689443 G C G C 3 synonymous_variant LOW transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G038400 chrUn_31689209 chrUn 31689209 G C G C 3 synonymous_variant LOW transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G038400 chrUn_31689152 chrUn 31689152 C G C G 3 synonymous_variant LOW transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G038400 chrUn_31689362 chrUn 31689362 G C G C 3 synonymous_variant LOW transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G038400 chrUn_31688680 chrUn 31688680 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G038400 chrUn_31689206 chrUn 31689206 C G C G 3 synonymous_variant LOW transcript non_Triplet 31688902 31690396 1495 6 0.40133779264214 RFvsST NA NA NA NA 166.553317342365 TraesCSU01G039900 chrUn_32202994 chrUn 32202994 T T C C 4 missense_variant MODERATE transcript non_Triplet 32198491 32207315 8825 1 0.0113314447592068 RFvsST NA NA NA NA 1044.86574812117 TraesCSU01G040100 chrUn_32238026 chrUn 32238026 C C T T 4 synonymous_variant LOW transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32236099 chrUn 32236099 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32237999 chrUn 32237999 T T C C 4 synonymous_variant LOW transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32236194 chrUn 32236194 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32237207 chrUn 32237207 T T C C 4 synonymous_variant LOW transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32239526 chrUn 32239526 G G C C 4 synonymous_variant LOW transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32243155 chrUn 32243155 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32243022 chrUn 32243022 C C A A 4 missense_variant MODERATE transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32238038 chrUn 32238038 A A C C 4 synonymous_variant LOW transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32243064 chrUn 32243064 C C G G 4 missense_variant MODERATE transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040100 chrUn_32236130 chrUn 32236130 C C A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 32236396 32243127 6732 11 0.163398692810458 RFvsST NA NA NA NA 28.0245252558914 TraesCSU01G040600 chrUn_32913138 chrUn 32913138 G G C C 4 missense_variant MODERATE transcript non_Triplet 32912695 32915739 3045 3 0.0985221674876847 RFvsST NA NA NA NA 12.6288209572626 TraesCSU01G040600 chrUn_32912788 chrUn 32912788 G G A A 4 synonymous_variant LOW transcript non_Triplet 32912695 32915739 3045 3 0.0985221674876847 RFvsST NA NA NA NA 12.6288209572626 TraesCSU01G040600 chrUn_32912640 chrUn 32912640 G G C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 32912695 32915739 3045 3 0.0985221674876847 RFvsST NA NA NA NA 12.6288209572626 TraesCSU01G044100 chrUn_35311370 chrUn 35311370 C A C A 3 missense_variant MODERATE transcript non_Triplet 35310858 35314074 3217 2 0.0621697233447311 RFvsST NA NA NA NA 365.131181681116 TraesCSU01G044100 chrUn_35313605 chrUn 35313605 C T C T 3 missense_variant MODERATE transcript non_Triplet 35310858 35314074 3217 2 0.0621697233447311 RFvsST NA NA NA NA 365.131181681116 TraesCSU01G044200 chrUn_35316776 chrUn 35316776 G T G T 3 synonymous_variant LOW transcript non_Triplet 35315336 35317532 2197 4 0.182066454255803 RFvsST NA NA NA NA 583.855881269859 TraesCSU01G044200 chrUn_35315406 chrUn 35315406 C T C T 3 missense_variant MODERATE transcript non_Triplet 35315336 35317532 2197 4 0.182066454255803 RFvsST NA NA NA NA 583.855881269859 TraesCSU01G044200 chrUn_35315882 chrUn 35315882 G G A A 4 missense_variant MODERATE transcript non_Triplet 35315336 35317532 2197 4 0.182066454255803 RFvsST NA NA NA NA 583.855881269859 TraesCSU01G044200 chrUn_35315394 chrUn 35315394 T C T C 3 missense_variant MODERATE transcript non_Triplet 35315336 35317532 2197 4 0.182066454255803 RFvsST NA NA NA NA 583.855881269859 TraesCSU01G049900 chrUn_39598076 chrUn 39598076 C C T T 4 missense_variant MODERATE transcript non_Triplet 39597969 39598346 378 1 0.264550264550265 RFvsST NA NA NA NA 10.403070078965 TraesCSU01G055900 chrUn_43286302 chrUn 43286302 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 43286382 43288512 2131 2 0.0938526513374003 RFvsST NA NA NA NA 25.1617849790057 TraesCSU01G055900 chrUn_43286316 chrUn 43286316 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 43286382 43288512 2131 2 0.0938526513374003 RFvsST NA NA NA NA 25.1617849790057 TraesCSU01G056200 chrUn_43323787 chrUn 43323787 A C A C 3 downstream_gene_variant MODIFIER transcript non_Triplet 43321376 43323716 2341 3 0.128150363092695 RFvsST NA NA NA NA No_match TraesCSU01G056200 chrUn_43323776 chrUn 43323776 G A G A 3 downstream_gene_variant MODIFIER transcript non_Triplet 43321376 43323716 2341 3 0.128150363092695 RFvsST NA NA NA NA No_match TraesCSU01G056200 chrUn_43321501 chrUn 43321501 G C G C 3 synonymous_variant LOW transcript non_Triplet 43321376 43323716 2341 3 0.128150363092695 RFvsST NA NA NA NA No_match TraesCSU01G056300 chrUn_43327633 chrUn 43327633 A G A G 3 synonymous_variant LOW transcript non_Triplet 43324615 43329285 4671 1 0.0214086919289231 RFvsST NA NA NA NA 1191.01416042144 TraesCSU01G062000 chrUn_48429175 chrUn 48429175 G G A A 4 synonymous_variant LOW transcript non_Triplet 48421519 48429340 7822 2 0.0255689082076195 RFvsST NA NA NA NA 483.30499589344 TraesCSU01G062000 chrUn_48423888 chrUn 48423888 G G C C 4 missense_variant MODERATE transcript non_Triplet 48421519 48429340 7822 2 0.0255689082076195 RFvsST NA NA NA NA 483.30499589344 TraesCSU01G063400 chrUn_49995227 chrUn 49995227 C C T T 4 downstream_gene_variant MODIFIER transcript non_Triplet 49995598 49998392 2795 1 0.035778175313059 RFvsST NA NA NA NA 16459.5463960829 TraesCSU01G063800 chrUn_50425274 chrUn 50425274 C C T T 4 synonymous_variant LOW transcript non_Triplet 50424038 50425364 1327 1 0.0753579502637528 RFvsST NA NA NA NA 216.959338349743 TraesCSU01G063900 chrUn_50425377 chrUn 50425377 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 50428749 50429732 984 1 0.101626016260163 RFvsST NA NA NA NA No_match TraesCSU01G064700 chrUn_50747206 chrUn 50747206 A A G G 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 50744107 50747403 3297 5 0.151653017895056 RFvsST NA NA NA NA 69.1360575665835 TraesCSU01G064700 chrUn_50746968 chrUn 50746968 G G C C 4 missense_variant MODERATE transcript non_Triplet 50744107 50747403 3297 5 0.151653017895056 RFvsST NA NA NA NA 69.1360575665835 TraesCSU01G064700 chrUn_50746987 chrUn 50746987 G G A A 4 synonymous_variant LOW transcript non_Triplet 50744107 50747403 3297 5 0.151653017895056 RFvsST NA NA NA NA 69.1360575665835 TraesCSU01G064700 chrUn_50747269 chrUn 50747269 C C T T 4 3_prime_UTR_variant MODIFIER transcript non_Triplet 50744107 50747403 3297 5 0.151653017895056 RFvsST NA NA NA NA 69.1360575665835 TraesCSU01G064700 chrUn_50746091 chrUn 50746091 T T C C 4 synonymous_variant LOW transcript non_Triplet 50744107 50747403 3297 5 0.151653017895056 RFvsST NA NA NA NA 69.1360575665835 TraesCSU01G064800 chrUn_50753729 chrUn 50753729 T T C C 4 upstream_gene_variant MODIFIER transcript non_Triplet 50752013 50752976 964 2 0.20746887966805 RFvsST NA NA NA NA 10.2999188691925 TraesCSU01G064800 chrUn_50753773 chrUn 50753773 C C G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 50752013 50752976 964 2 0.20746887966805 RFvsST NA NA NA NA 10.2999188691925 TraesCSU01G064900 chrUn_50754868 chrUn 50754868 T T C C 4 synonymous_variant LOW transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50754965 chrUn 50754965 C C G G 4 missense_variant MODERATE transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50755512 chrUn 50755512 C C T T 4 missense_variant MODERATE transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50755318 chrUn 50755318 C C T T 4 synonymous_variant LOW transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50754620 chrUn 50754620 C C A A 4 missense_variant MODERATE transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50755616 chrUn 50755616 C C T T 4 missense_variant MODERATE transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50755474 chrUn 50755474 G G A A 4 synonymous_variant LOW transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G064900 chrUn_50754602 chrUn 50754602 G G A A 4 synonymous_variant LOW transcript non_Triplet 50753823 50756506 2684 8 0.29806259314456 RFvsST NA NA NA NA 184.209477076454 TraesCSU01G065200 chrUn_50835907 chrUn 50835907 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 50832541 50833608 1068 2 0.187265917602996 RFvsST NA NA NA NA 26.0216127633488 TraesCSU01G065200 chrUn_50835904 chrUn 50835904 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 50832541 50833608 1068 2 0.187265917602996 RFvsST NA NA NA NA 26.0216127633488 TraesCSU01G065300 chrUn_50837302 chrUn 50837302 A T A T 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50838239 chrUn 50838239 A G A G 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50841058 chrUn 50841058 G A G A 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50835997 chrUn 50835997 C T C T 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50841264 chrUn 50841264 C T C T 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50840708 chrUn 50840708 T C T C 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50840009 chrUn 50840009 G A G A 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50836559 chrUn 50836559 C T C T 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50836003 chrUn 50836003 A G A G 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50836099 chrUn 50836099 T C T C 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50842200 chrUn 50842200 G A G A 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50841522 chrUn 50841522 T A T A 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50836715 chrUn 50836715 G A G A 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065300 chrUn_50836105 chrUn 50836105 A G A G 3 synonymous_variant LOW transcript non_Triplet 50835910 50842226 6317 14 0.221624188697166 RFvsST NA NA NA NA 112.647831709558 TraesCSU01G065700 chrUn_51199755 chrUn 51199755 C A C A 3 upstream_gene_variant MODIFIER transcript non_Triplet 51198929 51199633 705 2 0.283687943262411 RFvsST NA NA NA NA 305.826642535976 TraesCSU01G065700 chrUn_51199007 chrUn 51199007 C T C T 3 synonymous_variant LOW transcript non_Triplet 51198929 51199633 705 2 0.283687943262411 RFvsST NA NA NA NA 305.826642535976 TraesCSU01G065800 chrUn_51198809 chrUn 51198809 C T C T 3 upstream_gene_variant MODIFIER transcript non_Triplet 51203221 51206134 2914 1 0.0343170899107756 RFvsST NA NA NA NA 69.0514259993863 TraesCSU01G065900 chrUn_51205929 chrUn 51205929 C G C G 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 51205736 51205980 245 1 0.408163265306122 RFvsST NA NA NA NA No_match TraesCSU01G067000 chrUn_52072639 chrUn 52072639 G T G T 3 downstream_gene_variant MODIFIER transcript non_Triplet 52072738 52077023 4286 3 0.0699953336444237 RFvsST NA NA NA NA 38.2249299184906 TraesCSU01G067000 chrUn_52072742 chrUn 52072742 G A G A 3 missense_variant MODERATE transcript non_Triplet 52072738 52077023 4286 3 0.0699953336444237 RFvsST NA NA NA NA 38.2249299184906 TraesCSU01G067000 chrUn_52072480 chrUn 52072480 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 52072738 52077023 4286 3 0.0699953336444237 RFvsST NA NA NA NA 38.2249299184906 TraesCSU01G071300 chrUn_62221653 chrUn 62221653 C T C T 3 missense_variant MODERATE transcript non_Triplet 62221451 62221975 525 1 0.19047619047619 RFvsST NA NA NA NA 54.9946086820899 TraesCSU01G071400 chrUn_62650235 chrUn 62650235 C C T T 4 synonymous_variant LOW transcript non_Triplet 62646888 62651539 4652 2 0.0429922613929493 RFvsST NA NA NA NA 186.647410412028 TraesCSU01G071400 chrUn_62646910 chrUn 62646910 G G A A 4 missense_variant MODERATE transcript non_Triplet 62646888 62651539 4652 2 0.0429922613929493 RFvsST NA NA NA NA 186.647410412028 TraesCSU01G078100 chrUn_70290301 chrUn 70290301 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 70282973 70290271 7299 1 0.013700506918756 RFvsST NA NA NA NA 17.7342350561146 TraesCSU01G078600 chrUn_71184906 chrUn 71184906 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 71180984 71182531 1548 2 0.129198966408269 RFvsST NA NA NA NA 12.7868985248335 TraesCSU01G078600 chrUn_71184711 chrUn 71184711 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 71180984 71182531 1548 2 0.129198966408269 RFvsST NA NA NA NA 12.7868985248335 TraesCSU01G086500 chrUn_77062671 chrUn 77062671 G C G C 3 missense_variant MODERATE transcript non_Triplet 77062478 77065112 2635 3 0.113851992409867 RFvsST NA NA NA NA 42.414446781212 TraesCSU01G086500 chrUn_77068759 chrUn 77068759 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 77062478 77065112 2635 3 0.113851992409867 RFvsST NA NA NA NA 42.414446781212 TraesCSU01G086500 chrUn_77062802 chrUn 77062802 C T C T 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 77062478 77065112 2635 3 0.113851992409867 RFvsST NA NA NA NA 42.414446781212 TraesCSU01G086600 chrUn_77068476 chrUn 77068476 G T G T 3 missense_variant MODERATE transcript non_Triplet 77065312 77068596 3285 1 0.030441400304414 RFvsST NA NA NA NA 111.95816921889 TraesCSU01G090500 chrUn_81300673 chrUn 81300673 A G A G 3 splice_region_variant&synonymous_variant LOW transcript non_Triplet 81296469 81302814 6346 2 0.0315159155373464 RFvsST NA NA NA NA 203.825942994975 TraesCSU01G090500 chrUn_81297829 chrUn 81297829 A G A G 3 synonymous_variant LOW transcript non_Triplet 81296469 81302814 6346 2 0.0315159155373464 RFvsST NA NA NA NA 203.825942994975 TraesCSU01G093000 chrUn_82514026 chrUn 82514026 C T C T 3 synonymous_variant LOW transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82519435 chrUn 82519435 T C T C 3 synonymous_variant LOW transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82513537 chrUn 82513537 C G C G 3 downstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82518635 chrUn 82518635 A G A G 3 synonymous_variant LOW transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82513760 chrUn 82513760 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82513787 chrUn 82513787 T G T G 3 downstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82513805 chrUn 82513805 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82520077 chrUn 82520077 G G C C 4 missense_variant MODERATE transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82524140 chrUn 82524140 A G A G 3 upstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82519279 chrUn 82519279 C T C T 3 synonymous_variant LOW transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093000 chrUn_82513735 chrUn 82513735 A G A G 3 downstream_gene_variant MODIFIER transcript non_Triplet 82513945 82521810 7866 11 0.139842359521993 RFvsST NA NA NA NA 560.282192622484 TraesCSU01G093100 chrUn_82531252 chrUn 82531252 A G A G 3 missense_variant MODERATE transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530958 chrUn 82530958 C G C G 3 missense_variant MODERATE transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530997 chrUn 82530997 G A G A 3 missense_variant MODERATE transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82528402 chrUn 82528402 G A G A 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82529568 chrUn 82529568 T A T A 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530143 chrUn 82530143 A C A C 3 missense_variant MODERATE transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82528351 chrUn 82528351 G A G A 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530330 chrUn 82530330 T C T C 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530618 chrUn 82530618 C T C T 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82531103 chrUn 82531103 C T C T 3 missense_variant MODERATE transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G093100 chrUn_82530236 chrUn 82530236 G T G T 3 synonymous_variant LOW transcript non_Triplet 82524384 82531687 7304 11 0.150602409638554 RFvsST NA NA NA NA 418.119305129081 TraesCSU01G099500 chrUn_87980421 chrUn 87980421 G G T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 87980425 87983543 3119 2 0.0641231163834562 RFvsST NA NA NA NA No_match TraesCSU01G099500 chrUn_87983544 chrUn 87983544 G G A A 4 downstream_gene_variant MODIFIER transcript non_Triplet 87980425 87983543 3119 2 0.0641231163834562 RFvsST NA NA NA NA No_match TraesCSU01G099700 chrUn_88194967 chrUn 88194967 C C A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G099700 chrUn_88195924 chrUn 88195924 C C T T 4 splice_region_variant&intron_variant LOW transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G099700 chrUn_88196216 chrUn 88196216 T T C C 4 intron_variant MODIFIER transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G099700 chrUn_88196267 chrUn 88196267 T T C C 4 intron_variant MODIFIER transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G099700 chrUn_88196301 chrUn 88196301 C C T T 4 intron_variant MODIFIER transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G099700 chrUn_88196217 chrUn 88196217 T T A A 4 intron_variant MODIFIER transcript non_Triplet 88195052 88196458 1407 6 0.426439232409382 RFvsST NA NA NA NA 258.650673697021 TraesCSU01G101000 chrUn_88998112 chrUn 88998112 G G A A 4 missense_variant MODERATE transcript non_Triplet 88995570 88998370 2801 1 0.0357015351660121 RFvsST NA NA NA NA 19.0653081575756 TraesCSU01G106300 chrUn_93134632 chrUn 93134632 C C G G 4 missense_variant MODERATE transcript non_Triplet 93132141 93134666 2526 1 0.0395882818685669 RFvsST NA NA NA NA 501.751501302625 TraesCSU01G108900 chrUn_94822588 chrUn 94822588 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 94822624 94823916 1293 1 0.0773395204949729 RFvsST NA NA NA NA 191.983227735385 TraesCSU01G110300 chrUn_95396377 chrUn 95396377 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 95394938 95396371 1434 1 0.0697350069735007 RFvsST NA NA NA NA 142.066272642374 TraesCSU01G110800 chrUn_95712394 chrUn 95712394 C T C T 3 synonymous_variant LOW transcript non_Triplet 95707543 95713396 5854 1 0.017082336863683 RFvsST NA NA NA NA 384.677385357252 TraesCSU01G111300 chrUn_95968030 chrUn 95968030 C C A A 4 missense_variant MODERATE transcript non_Triplet 95965565 95968269 2705 1 0.0369685767097967 RFvsST NA NA NA NA 48.9541532169201 TraesCSU01G111500 chrUn_95979448 chrUn 95979448 A T A T 3 upstream_gene_variant MODIFIER transcript non_Triplet 95982996 95985818 2823 1 0.0354233085370174 RFvsST NA NA NA NA No_match TraesCSU01G118800 chrUn_102005877 chrUn 102005877 G A G A 3 missense_variant MODERATE transcript non_Triplet 102005446 102006618 1173 1 0.0852514919011083 RFvsST NA NA NA NA 73.9034586884377 TraesCSU01G119700 chrUn_102838067 chrUn 102838067 G A G A 3 upstream_gene_variant MODIFIER transcript non_Triplet 102837655 102839837 2183 1 0.0458085203847916 RFvsST NA NA NA NA 169.297875113018 TraesCSU01G129200 chrUn_110382875 chrUn 110382875 C T C T 3 synonymous_variant LOW transcript non_Triplet 110382137 110386905 4769 1 0.0209687565527364 RFvsST NA NA NA NA 167.952437270985 TraesCSU01G138900 chrUn_126965047 chrUn 126965047 G T G T 3 synonymous_variant LOW transcript non_Triplet 126964406 126971901 7496 1 0.0133404482390608 RFvsST NA NA NA NA 197.994837599925 TraesCSU01G145200 chrUn_156529408 chrUn 156529408 T T C C 4 synonymous_variant LOW transcript non_Triplet 156525146 156530766 5621 1 0.0177904287493329 RFvsST NA NA NA NA 365.129619348601 TraesCSU01G152100 chrUn_188194611 chrUn 188194611 T T C C 4 downstream_gene_variant MODIFIER transcript non_Triplet 188194712 188197434 2723 3 0.110172603745869 RFvsST NA NA NA NA 289.517026612816 TraesCSU01G152100 chrUn_188195252 chrUn 188195252 A A C C 4 missense_variant MODERATE transcript non_Triplet 188194712 188197434 2723 3 0.110172603745869 RFvsST NA NA NA NA 289.517026612816 TraesCSU01G152100 chrUn_188197414 chrUn 188197414 T T C C 4 synonymous_variant LOW transcript non_Triplet 188194712 188197434 2723 3 0.110172603745869 RFvsST NA NA NA NA 289.517026612816 TraesCSU01G153000 chrUn_194637073 chrUn 194637073 G G C C 4 synonymous_variant LOW transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194632460 chrUn 194632460 T T G G 4 upstream_gene_variant MODIFIER transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194636252 chrUn 194636252 A A G G 4 missense_variant MODERATE transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194636111 chrUn 194636111 C C T T 4 synonymous_variant LOW transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194636362 chrUn 194636362 C C T T 4 missense_variant MODERATE transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194635676 chrUn 194635676 T T C C 4 synonymous_variant LOW transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G153000 chrUn_194632481 chrUn 194632481 C C T T 4 upstream_gene_variant MODIFIER transcript non_Triplet 194632943 194637163 4221 7 0.165837479270315 RFvsST NA NA NA NA 329.581846469848 TraesCSU01G156000 chrUn_214317868 chrUn 214317868 C T C T 3 downstream_gene_variant MODIFIER transcript non_Triplet 214317404 214317814 411 1 0.24330900243309 RFvsST NA NA NA NA 17.4699670494396 TraesCSU01G156100 chrUn_214329067 chrUn 214329067 G G A A 4 stop_gained HIGH transcript non_Triplet 214328059 214330707 2649 2 0.0755001887504719 RFvsST NA NA NA NA 315.448360118856 TraesCSU01G156100 chrUn_214328760 chrUn 214328760 G A G A 3 missense_variant MODERATE transcript non_Triplet 214328059 214330707 2649 2 0.0755001887504719 RFvsST NA NA NA NA 315.448360118856 TraesCSU01G156400 chrUn_214895026 chrUn 214895026 G G A A 4 missense_variant MODERATE transcript non_Triplet 214894468 214895748 1281 1 0.078064012490242 RFvsST NA NA NA NA 6.83392955073542 TraesCSU01G159000 chrUn_222639561 chrUn 222639561 A G A G 3 synonymous_variant LOW transcript non_Triplet 222639034 222639645 612 1 0.163398692810458 RFvsST NA NA NA NA 271.618585528126 TraesCSU01G177000 chrUn_266782376 chrUn 266782376 A A T T 4 missense_variant MODERATE transcript non_Triplet 266780255 266783122 2868 1 0.0348675034867503 RFvsST NA NA NA NA 435.186353322686 TraesCSU01G178900 chrUn_269556675 chrUn 269556675 G G A A 4 synonymous_variant LOW transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269555053 chrUn 269555053 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269556629 chrUn 269556629 C T C T 3 missense_variant MODERATE transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269557535 chrUn 269557535 C C T T 4 missense_variant MODERATE transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269557427 chrUn 269557427 G G A A 4 missense_variant MODERATE transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269555032 chrUn 269555032 G G A A 4 upstream_gene_variant MODIFIER transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G178900 chrUn_269557124 chrUn 269557124 G G A A 4 synonymous_variant LOW transcript non_Triplet 269556214 269559176 2963 7 0.236247046911914 RFvsST NA NA NA NA 62.1127380194412 TraesCSU01G194300 chrUn_291412666 chrUn 291412666 A T A T 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 291412210 291415430 3221 5 0.155231294628997 RFvsST NA NA NA NA 135.208731355753 TraesCSU01G194300 chrUn_291412362 chrUn 291412362 C T C T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 291412210 291415430 3221 5 0.155231294628997 RFvsST NA NA NA NA 135.208731355753 TraesCSU01G194300 chrUn_291412285 chrUn 291412285 G T G T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 291412210 291415430 3221 5 0.155231294628997 RFvsST NA NA NA NA 135.208731355753 TraesCSU01G194300 chrUn_291412570 chrUn 291412570 C T C T 3 5_prime_UTR_premature_start_codon_gain_variant LOW transcript non_Triplet 291412210 291415430 3221 5 0.155231294628997 RFvsST NA NA NA NA 135.208731355753 TraesCSU01G194300 chrUn_291412711 chrUn 291412711 A C A C 3 5_prime_UTR_variant MODIFIER transcript non_Triplet 291412210 291415430 3221 5 0.155231294628997 RFvsST NA NA NA NA 135.208731355753 TraesCSU01G250000 chrUn_381573431 chrUn 381573431 G G A A 4 missense_variant MODERATE transcript non_Triplet 381572747 381573793 1047 1 0.0955109837631328 RFvsST NA NA NA NA 391.56018570526