#Supplemental File 11 ##Submission script for JupiterPlot module load SAMtools/1.9-foss-2016b module load BWA/0.7.17-foss-2016b module load Circos/0.69-6-foss-2016b-Perl-5.24.1 #Comparison of M. melodia and T. guttate ./../JupiterPlot-master/jupiter name=compare ng=85 maxGap=100000 minBundleSize=10000 m=100000 i=200 t=16 ref=./../JupiterPlot-master/guttata.fna \ fa=./../JupiterPlot-master/song_sparrow_04Oct2016_v2yLs.fasta