Bowtie2 v2.3.4.1

# Pelobates cultripes

426300637 reads; of these:
  426300637 (100.00%) were paired; of these:
    133849913 (31.40%) aligned concordantly 0 times
    81444335 (19.10%) aligned concordantly exactly 1 time
    211006389 (49.50%) aligned concordantly >1 times
    ----
    133849913 pairs aligned concordantly 0 times; of these:
      6487748 (4.85%) aligned discordantly 1 time
    ----
    127362165 pairs aligned 0 times concordantly or discordantly; of these:
      254724330 mates make up the pairs; of these:
        136772648 (53.69%) aligned 0 times
        34392000 (13.50%) aligned exactly 1 time
        83559682 (32.80%) aligned >1 times
83.96% overall alignment rate


# Scaphiopus couchii

459246661 reads; of these:
  459246661 (100.00%) were paired; of these:
    95970760 (20.90%) aligned concordantly 0 times
    82485245 (17.96%) aligned concordantly exactly 1 time
    280790656 (61.14%) aligned concordantly >1 times
    ----
    95970760 pairs aligned concordantly 0 times; of these:
      6122748 (6.38%) aligned discordantly 1 time
    ----
    89848012 pairs aligned 0 times concordantly or discordantly; of these:
      179696024 mates make up the pairs; of these:
        85288218 (47.46%) aligned 0 times
        25191810 (14.02%) aligned exactly 1 time
        69215996 (38.52%) aligned >1 times
90.71% overall alignment rate