Table S3. BUSCO genome and gene set assessments of selected Hymenoptera.			
Complete BUSCOs (C); Complete and single-copy BUSCOs (S); Complete and duplicated BUSCOs (D); Fragmented BUSCOs (F); Missing BUSCOs (M); Total BUSCO groups searched (n) for Insecta (Ins.) and Hymenoptera (Hym.) assessment sets.			
			
TaxID	Organism	Genome (source) Geneset (source)	BUSCO completeness
			
115081	Megalopta genalis	"Genome (Kapheim et al., unpublished)"	"Ins. C:98.9%[S:96.6%,D:2.3%],F:0.2%,M:0.9%,n:1658"
			"Hym. C:97.4%[S:97.3%,D:0.1%],F:1.1%,M:1.5%,n:4415"
		"Geneset (Kapheim et al., unpublished)"	"Ins. C:96.6%[S:94.8%,D:1.8%],F:1.7%,M:1.7%,n:1658"
			"Hym. C:93.5%[S:92.2%,D:1.3%],F:3.4%,M:3.1%,n:4415"
88501	Lasioglossum albipes	Genome (NCBI)	"Ins. C:98.6%[S:96.7%,D:1.9%],F:0.4%,M:1.0%,n:1658"
		GCA_000346575.1	"Hym. C:97.5%[S:96.4%,D:1.1%],F:1.3%,M:1.2%,n:4415"
		Geneset (i5k)	"Ins. C:97.8%[S:95.7%,D:2.1%],F:1.5%,M:0.7%,n:1658"
		Lalb_OGS_v5.42	"Hym. C:95.9%[S:94.9%,D:1.0%],F:3.6%,M:0.5%,n:4415"
NA	Nomia melanderi	Genome	"Ins. C:98.8%[S:98.6%,D:0.2%],F:0.5%,M:0.7%,n:1658"
			"Hym. C:97.4%[S:97.3%,D:0.1%],F:1.1%,M:1.5%,n:4415"
		Geneset 	"Ins. C:96.0%[S:95.7%,D:0.3%],F:2.1%,M:1.9%,n:1658"
			"Hym. C:93.4%[S:93.2%,D:0.2%],F:4.0%,M:2.6%,n:4415"
178035	Dufourea novaeangliae	Genome (NCBI)	"Ins. C:98.9%[S:98.6%,D:0.3%],F:0.2%,M:0.9%,n:1658"
		GCA_001272555.1	"Hym. C:97.9%[S:97.7%,D:0.2%],F:1.0%,M:1.1%,n:4415"
		Geneset (NCBI)	"Ins.  C:92.2%[S:91.6%,D:0.6%],F:1.7%,M:6.1%,n:1658"
		GCA_001272555.1_ASM127255v1	"Hym.  C:88.8%[S:88.6%,D:0.2%],F:3.4%,M:7.8%,n:4415"
7460	Apis mellifera	Genome (NCBI)	"Ins.  C:98.2%[S:97.5%,D:0.7%],F:0.7%,M:1.1%,n:1658"
		GCA_000002195.1	"Hym.  C:97.4%[S:97.1%,D:0.3%],F:1.3%,M:1.3%,n:4415"
		Geneset (BeeBase)	"Ins.  C:97.6%[S:96.8%,D:0.8%],F:1.6%,M:0.8%,n:1658"
		OGSv3.2	"Hym.  C:97.2%[S:96.9%,D:0.3%],F:2.6%,M:0.2%,n:4415"
30195	Bombus terrestris	Genome (NCBI)	"Ins. C:98.8%[S:98.6%,D:0.2%],F:0.4%,M:0.8%,n:1658"
		GCA_000214255.1 Bter_1.0	"Hym. C:97.4%[S:97.3%,D:0.1%],F:1.4%,M:1.2%,n:4415"
		Geneset (NCBI)	"Ins. C:99.6%[S:62.3%,D:37.3%*],F:0.2%,M:0.2%,n:1658"
		GCF_000214255.1_Bter_1.0	"Hym. C:98.9%[S:54.2%,D:44.7%*],F:0.8%,M:0.3%,n:4415"
597456	Habropoda laboriosa	Genome (NCBI)	"Ins.  C:98.8%[S:98.3%,D:0.5%],F:0.5%,M:0.7%,n:1658"
		GCA_001263275.1	"Hym.  C:97.2%[S:96.9%,D:0.3%],F:1.5%,M:1.3%,n:4415"
		Geneset (i5k)	"Ins.  C:94.1%[S:93.6%,D:0.5%],F:2.6%,M:3.3%,n:1658"
		Hlab v1.0 (ASM126327v1)	"Hym.  C:91.5%[S:91.3%,D:0.2%],F:4.3%,M:4.2%,n:4415"
143995	Megachile rotundata	Genome (NCBI)	"Ins. C:99.7%[S:99.5%,D:0.2%],F:0.1%,M:0.2%,n:1658"
		GCF_000220905.1_MROT_1.0	"Hym. C:99.1%[S:99.0%,D:0.1%],F:0.4%,M:0.5%,n:4415"
		Geneset (NCBI)	"Ins. C:99.3%[S:52.6%,D:46.7%*],F:0.3%,M:0.4%,n:1658"
		GCF_000220905.1_MROT_1.0	"Hym. C:98.5%[S:45.0%,D:53.5%*],F:0.8%,M:0.7%,n:4415"
"* Not representative high score in BUSCO assessment of gene duplication, due to the presence of multiple alternative transcript gene sequences in the geneset files of B. terrestris and M. rotundata, downloaded from NCBI Reference Sequence Database.  "