Control files parameters used for MAKER-P annotation. ### maker_bopts.ctl blast_type=ncbi+ pcov_blastn=0.8 pid_blastn=0.85 eval_blastn=1e-10 bit_blastn=40 depth_blastn=0 pcov_blastx=0.5 pid_blastx=0.4 eval_blastx=1e-06 bit_blastx=30 depth_blastx=0 pcov_tblastx=0.8 pid_tblastx=0.85 eval_tblastx=1e-10 bit_tblastx=40 depth_tblastx=0 pcov_rm_blastx=0.5 pid_rm_blastx=0.4 eval_rm_blastx=1e-06 bit_rm_blastx=30 ep_score_limit=20 en_score_limit=20 ### maker_opts.ctl organism_type=eukaryotic est_pass=1 altest_pass=1 protein_pass=1 rm_pass=1 model_pass=0 pred_pass=1  unmask=1 alt_peptide=C pred_flank=200 pred_stats=1 AED_threshold=1 split_hit=10000 single_exon=1 single_length=250 tries=4