#Supplemental File 8 from #A high-quality reference genome for the invasive mosquitofish Gambusia affinis using a Chicago library #Sandra L. Hoffberg, Nicholas J. Troendle, Travis C. Glenn, Ousman Mahmud, Swarnali Louha, Domitille Chalopin, Jeffrey L. Bennetzen, Rodney Mauricio #Submission script for the prediction of miRNAs, rRNAs, snRNAs, and snoRNAs #!/bin/bash blastn -db dbfish -query db_miRNA.fasta -out miRNA_matches -task blastn \ -outfmt "7 qseqid qlen sseqid slen pident length mismatch gapopen qstart qend sstart send evalue bitscore sseq" -num_threads 4 #Submission script for the prediction of tRNAs #!/bin/bash tRNAscan-SE -E -o output -f strc -s isotype_models -m stat -a fasta -l log --detail --thread 15 ./hirise_iter_broken_3.gapclosed.fasta