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FORTRAN77 codes and sample outputs for J.L. Campos & B. Charlesworth 2019
The effects on neutral variability of recurrent selective sweeps and background selection
FIRST PROGRAM: ssw61
c program to calculate recurrent sweep effects
c includes summation and integration results
c includes correction for sweep durations
c incorporates BGS effects (B) that vary with recombination rate
c allows correction factor for B
c corrections for coalescence during sweep and multiple recombination events
c includes stochastic phases in fixation times with variance term
character*20 FOUT,FIN
real sa,pa,gama,su,pu,gamu,pi,alcs,alut5,alut3,rec,gcr,dg,gama1,gamu1,Corrset(50)
real rec1,rec2,rec3,SN,SU,adrate,SNSA,SUTA,ENSA,EUTA,TSA,TSE,B1,recset(50),Bset(50)
real SNSE,SUTE,ENSE,EUTE,AIE,B,x,pirela1,pirela2,pirele1,pirele2,intfac
integer i,lint,lut5,lut3,nex,lex
WRITE (9,*) 'Input file?'
READ (9,*) FIN
WRITE (9,*) 'Output file?'
READ (9,*) FOUT
WRITE (9,*) ''
OPEN (2,FILE=FIN)
OPEN (1,FILE=FOUT)
READ (2,*) sa,pa
READ (2,*) gama
READ (2,*) pexa
READ (2,*) su,pu
READ (2,*) gamu
READ (2,*) pi
READ (2,*) lut5,lut3
READ (2,*) nex,lex
READ (2,*) lint
READ (2,*) rec
READ (2,*) gcr,dg
READ (2,*) ndat
WRITE (9,*) 'Interference factor?'
READ (9,*) intfac
c intfac=1 if there is no adjustment for interference
WRITE (1,*) 'Program to calculate recurrent sweep effects with BGS'
WRITE (1,*) 'Includes correction for sweep durations'
WRITE (1,*) 'Correction for effect of sweeps on BGS allowed'
WRITE (1,*) 'Correction for coalescence during sweep'
WRITE (1,*) 'Correction for multiple recombination events in summation formula'
WRITE (1,*) 'Includes stochastic phases in fixation times with variance term'
WRITE (1,*) ''
WRITE (1,*) 'sa= ',sa,' pa= ',pa
WRITE (1,*) 'gamma for NS mutations= ',gama
WRITE (1,*) 'Proportion of exonic sites under selection= ',pexa
WRITE (1,*) 'su= ',su,' pu= ',pu
WRITE (1,*) 'gamma for UTR mutations= ',gamu
WRITE (1,*) ''
WRITE (1,*) 'neutral diversity= ',pi
WRITE (1,*) 'crossing over rate= ',rec
WRITE (1,*) 'gene conversion rate= ',gcr,' mean tract length =',dg
WRITE (1,*) ''
WRITE (1,*) '5-prime UTR length= ',lut5
WRITE (1,*) '3-prime UTR length= ',lut3
WRITE (1,*) 'Number of exons= ',nex,' Length of exons (in codons) = ',lex
alcs1=3*lex*nex
alcs=alcs1+(nex-1)*lint
WRITE (1,*) 'Coding sequence length= ',alcs1
WRITE (1,*) 'Intron length= ',lint
WRITE (1,*) 'Interference factor= ',intfac
WRITE (9,*) 'sa= ',sa,' pa= ',pa
WRITE (9,*) 'gamma for NS mutations= ',gama
WRITE (9,*) 'su= ',su,' pu= ',pu
WRITE (9,*) 'Proportion of exonic sites under selection= ',pexa
WRITE (9,*) 'gamma for UTR mutations= ',gamu
WRITE (9,*) ''
WRITE (9,*) 'neutral diversity= ',pi
WRITE (9,*) 'crossing over rate= ',rec
WRITE (9,*) 'gene conversion rate= ',gcr,' mean tract length =',dg
WRITE (9,*) ''
WRITE (9,*) '5-prime UTR length= ',lut5
WRITE (9,*) '3-prime UTR length= ',lut3
WRITE (9,*) 'Number of exons= ',nex,' Length of exons= ',lex
WRITE (9,*) 'Coding sequence length= ',alcs
WRITE (9,*) 'Intron length= ',lint
WRITE (9,*) 'Interference factor= ',intfac
pause
rec1=rec
alut5=lut5
alut3=lut3
WRITE (1,*) ''
WRITE (9,*) ''
adrate1=0.5*pi*pa*gama*intfac
c rate of sweeps per NS site
adrate2=0.5*pi*pu*gamu*intfac
c rate of sweeps per UTR site
adrate=adrate1*(3*pexa*nex*lex)+adrate2*(lut3+lut5)
c total rate of NS and UTR sweeps per gene, not corrected for BGS
WRITE(1,*) 'Rates of adaptive substitutions in absence of BGS'
WRITE(1,*) 'Rate of adaptive NS substitutions per site= ',adrate1
WRITE(1,*) 'Rate of adaptive UTR substitutions= ',adrate2
WRITE(1,*) 'Net rate of adaptive substitutions= ',adrate
WRITE(9,*) 'Net rate of adaptive substitutions= ',adrate
WRITE(1,*) ''
do 5 i1=1,ndat
5 READ(2,*) recset(i1),Bset(i1),Corrset(i1)
do 100 i2=1,ndat
rfac=recset(i2)
B=Bset(i2)
C=Corrset(i2)
WRITE (9,*) 'Recombination factor= ',rfac
WRITE (9,*) 'B1= ',B,' correction factor for B= ',C
WRITE (1,*) 'Recombination factor= ',rfac
WRITE (1,*) 'B1= ',B,' correction factor for B= ',C
WRITE (1,*) ''
B1=B
B=C*B
c uses simulation result to correct for effect of sweeps on B
c C is equivalent to 1/lambda in the paper
c B is equivalent to B2 in the paper
x=adrate*B
c rate of substitutions corrected for BGS
y=B*x
if(y.ge.1.00001) then
S=log(1.0+(1.0/y))
write(1,*) 'Integral I= ',S
go to 10
end if
if(x.ge.0.99999) then
S=0.6931
write(1,*) 'Integral I= ',S
go to 10
else
WRITE (9,*) 'Number of terms in series limit ?'
READ (9,*) nmax
WRITE (1,*) ''
WRITE (1,*) 'Number of terms in series limit= ',nmax
WRITE (1,*) ''
call series(nmax,x,S,B1)
WRITE (1,*) 'i = ',i,' c= ',c,' Integral I= ',S
end if
10 AIE=B1*S*x
WRITE(1,*) 'Mean recovery factor (B1*omega*I) = ',AIE
WRITE(1,*) ''
rec=rec1*rfac
g=gcr*dg
a1=(1.0-dg/alcs)
c approximate contribution from NS sites
zeta=(log(B*gama)+(0.5*B1/C))/sa
prod1=4*zeta*(rec+gcr)
prod2=4*zeta*rec
a2=4*zeta*g
a3=alcs*prod1
a4=alcs*prod2
if(dg.le.1) then
S1=0.0
else
S1=(1.0/prod1)*((dg/alcs)-(1-exp(0.0-dg*prod1))/a3)
end if
if(dg.le.1) then
S2=(1.0/prod2)*(1-(1-exp(0.0-a4))/a4)
else
S2=exp(-a2)/prod2
S2=S2*((a1*exp(0.0-dg*prod2))-(exp(0.0-dg*prod2)-exp(0.0-a4))/a4)
S2=S2+(a1/prod1)*(1-exp(0.0-prod1*dg))
end if
ENSA=2*(S1+S2)
c approximate mean NS sweep effect
c a factor of 2 is applied since S1 and S2 are one-half of the total values
SNSA=B*adrate1*ENSA*pexa
c the last term corrects for the fraction of the net gene length due to NS sites
WRITE (1,*) 'Approximate mean NS sweep effect= ',ENSA
WRITE (1,*) 'Approximate NS contribution to sweep coalescent rate= ',SNSA
WRITE (1,*) ''
c exact NS contribution to sweep coalescent rate
rec2=rec
x WRITE (9,*) 'gama,gamu',gama,gamu
gama1=gama
call sweep(gama1,sa,rec2,gcr,dg,lex,lint,nex,SN,B1,C)
x WRITE (9,*) 'gama1,gama',gama1,gama
ENSE=SN
c exact mean NS sweep effect
WRITE (1,*) 'Exact mean NS sweep effect= ',ENSE
SNSE=B*adrate1*ENSE
WRITE (1,*) 'Exact NS contribution to sweep coalescent rate= ',SNSE
WRITE (1,*) ''
c approximate contribution from UTR5 sites
zeta=(log(B*gamu)+(0.5*B1/C))/su
prod1=4*zeta*(rec+gcr)
prod2=4*zeta*rec
a2=4*zeta*g
a3=alcs*prod1
a4=alcs*prod2
if(dg.ge.alut5) then
SU51=(1-exp(0.0-prod1*alut5))/prod1
SU51=(SU51-alut5*exp(0.0-prod1*dg))/a3
SU52=alut5*exp(0.0-dg*prod2)
SU52=SU52-(exp(-a4)*(1-exp(0.0-alut5*prod2))/prod2)
SU52=SU52*exp(0.0-a2)/a4
SU5=SU51+SU52
else
if(dg.le.1) then
SU53=0.0
else
SU53=(1.0-exp(0.0-dg*prod1))/prod1
SU53=SU53-dg*exp(0.0-dg*prod1)
SU53=SU53/a3
end if
if(dg.le.1) then
SU54=0.0
else
SU54=dg*exp(0.0-dg*prod2)
SU54=SU54-(1.0-exp(0.0-dg*prod2))*exp(0.0-a4)/prod2
SU54=SU54*exp(0.0-a2)/a4
end if
if(dg.le.1) then
SU55=(1-exp(0.0-a4))*(1-exp(0.0-alut5*prod2))/(prod2*a4)
else
SU55=exp(-0.0-dg*prod2)-exp(0.0-alut5*prod2)
SU55=SU55*exp(-a2)*(1-exp(0.0-a4))/(prod2*a4)
end if
SU5=SU53+SU54+SU55
end if
EU5A=SU5
SU5A=SU5*adrate2*B
c approximate sweep contributions from UTR5 sites
if(dg.ge.alut3) then
SU31=(1-exp(0.0-prod1*alut3))/prod1
SU31=(SU31-alut3*exp(0.0-prod1*dg))/a3
SU32=alut3*exp(0.0-dg*prod2)
SU32=SU32-(exp(-a4)*(1-exp(0.0-alut3*prod2))/prod2)
SU32=SU32*exp(0.0-a2)/a4
SU3=SU31+SU32
else
if(dg.le.1) then
SU33=0.0
else
SU33=(1.0-exp(0.0-dg*prod1))/prod1
SU33=SU33-dg*exp(0.0-dg*prod1)
SU33=SU33/a3
end if
if(dg.le.1) then
SU34=0.0
else
SU34=dg*exp(0.0-dg*prod2)
SU34=SU34-(1.0-exp(0.0-dg*prod2))*exp(0.0-a4)/prod2
SU34=SU34*exp(0.0-a2)/a4
end if
if(dg.le.1) then
SU35=(1-exp(0.0-a4))*(1-exp(0.0-alut3*prod2))/(prod2*a4)
else
SU535=exp(-0.0-dg*prod2)-exp(0.0-alut3*prod2)
SU35=SU35*exp(-a2)*(1-exp(0.0-a4))/(prod2*a4)
end if
SU3=SU33+SU34+SU35
end if
EU3A=SU3
SU3A=SU3*adrate2*B
EUTA=EU5A+EU3A
SUTA=SU5A+SU3A
c approximate contributions from UTR3 sites
WRITE (1,*) 'Approximate mean UTR sweep effect= ',EUTA
WRITE (1,*) ''
WRITE (1,*) 'Approximate UTR5 contribution to sweep coalescent rate= ',SU5A
WRITE (1,*) 'Approximate UTR3 contribution to sweep coalescent rate= ',SU3A
WRITE (1,*) 'Approximate net UTR contribution to sweep coalescent rate= ',SUTA
WRITE (1,*) ''
rec3=rec
gamu1=gamu
call sweeputr(gamu1,su,rec3,gcr,dg,lex,lint,lut3,lut5,nex,SU,B1,C)
EUTE=SU
SUTE=SU*adrate2*B
WRITE (1,*) 'Exact mean UTR sweep effect= ',EUTE
WRITE (1,*) 'Exact UTR contribution to sweep coalescent rate= ',SUTE
WRITE (1,*) ''
STA=(SNSA+SUTA)
STE=(SNSE+SUTE)
B11=1.0/B1
BA1=B*gama
BU1=B*gamu
TT1=log(BA1)
TT2=log(BU1)
c log components of deterministic fixation times
TS1=4*(TT1+(0.5/C))/gama
TS2=4*(TT2+(0.5/C))/gamu
c mean sweep times for NS and UTR mutations
CFA=1.0/(1-1.0/(BA1))
CFU=1.0/(1-1.0/(BU1))
TS11=(2*TT1+(1/C))/(2*TT1+(0.5*C)+BA1-CFA)
TS21=(2*TT2+(1/C))/(2*TT2+(0.5*C)+BU1-CFU)
c corrections for coalescence during sweeps
TSA=B1*((TS11*SNSA)+(TS21*SUTA))/STA
c mean approximate contribution from coalescence during sweeps
TSE=B1*((TS11*SNSE)+(TS21*SUTE))/STE
c mean exact contribution from coalescence during sweeps
WRITE (1,*) 'Approximate sweep coalescent rate (uncorrected) = ',STA
WRITE (1,*) ''
WRITE (9,*) 'Approximate sweep coalescent rate (uncorrected) = ',STA
WRITE (1,*) 'Approximate coalescence time during sweep= ',TSA
WRITE (1,*) ''
WRITE (9,*) ''
WRITE (9,*) 'Approximate relative coalescent time during sweep= ',TSA
WRITE (9,*) ''
pirela1=1.0/(B11+STA)
WRITE (1,*) 'Approximate relative diversity (uncorrected) = ',pirela1
WRITE (1,*) ''
WRITE (9,*) 'Approximate relative diversity (uncorrected ) = ',pirela1
WRITE (9,*) ''
call sswncorr(x,TSA,AIE,B1,STA,pirela2)
WRITE (1,*) 'Corrected approx. relative diversity outside a sweep= ',pirela2
WRITE (1,*) ''
WRITE (9,*) 'Corrected approx. relative diversity outside a sweep= ',pirela2
WRITE (9,*) ''
prob1=exp(0.0-TS1*STA)
prob2=exp(0.0-TS2*STA)
Pos=(SNSA*prob1+SUTA*prob2)/STA
c probability that a sample is not included in a sweep
pirela2=pirela2*Pos
pirela3=(SNSA*(1-prob1)*TS11+SUTA*(1-prob2)*TS21)/STA
c contribution from samples included in NS and UTR sweeps (upper bound)
pirela4=pirela2+pirela3
WRITE (1,*) 'Corrected approx. net relative diversity= ',pirela4
WRITE (1,*) ''
WRITE (9,*) 'Corrected approx. net relative diversity= ',pirela4
WRITE (9,*) ''
WRITE (1,*) 'Exact sweep coalescent rate= ',STE
WRITE (1,*) ''
WRITE (9,*) 'Exact sweep coalescent rate= ',STE
WRITE (1,*) ''
pirele1=1.0/(B11+STE)
WRITE (1,*) 'Exact relative diversity (uncorrected) = ',pirele1
WRITE (1,*) ''
WRITE (9,*) 'Exact relative diversity (uncorrected) = ',pirele1
WRITE (9,*) ''
WRITE (1,*) 'Exact relative coalescent time during sweep= ',TSE
WRITE (1,*) ''
WRITE (9,*) 'Exact relative coalescent time during sweep= ',TSE
WRITE (9,*) ''
call sswncorr(x,TSE,AIE,B1,STE,pirele2)
WRITE (1,*) 'Corrected exact relative diversity outside a sweep= ',pirele2
WRITE (1,*) ''
WRITE (9,*) 'Corrected exact relative diversity outside a sweep= ',pirele2
WRITE (1,*) ''
prob1=exp(0.0-TS1*STE)
prob2=exp(0.0-TS2*STE)
Pos=(SNSE*prob1+SUTE*prob2)/STE
c probability that a sample is not included in a sweep
pirele2=pirele2*Pos
pirele3=(SNSE*(1-prob1)*TS11+SUTE*(1-prob2)*TS21)/STE
c contribution from samples included in NS and UTR sweeps (upper bound)
pirele4=pirele2+pirele3
WRITE (1,*) 'Corrected exact net relative diversity= ',pirele4
WRITE (1,*) ''
WRITE (9,*) 'Corrected exact net relative diversity= ',pirele4
WRITE (9,*) ''
WRITE (1,*) ''
100 continue
200 END
subroutine sweep(gamm,sa,rec,gcr,dg,lex,lint,nex,SN,B,C)
c summation version of sweep equation for nonsynomyous sites
c includes stochastic term in sweep function and correction for multiple rec events
real gamm,rg,gcr,dg,Efunc(5000),Back,rec,rec1,sa,rs,Evalue,corfac,B,C
integer lex,lint,nex,icoord,icode(5000),nbp,i,ic
c lex is length of exon (in codons), lint is length of introns (in bp), nex is number of exons
rg=gcr*dg
rec1=rec
c stores crossing over rate per bp
gamm=B*C*gamm
c discounts gamma by BGS effect
c next section codes each bp as nonsyn (1), syn (2) or int (3)
icoord=0
i=0
10 i=i+1
if(i.eq.1) go to 30
if(lint.eq.0) go to 30
do 20 k=1,lint
icoord=icoord+1
icode(icoord)=3
20 continue
c codes intronic sites
30 do 40 ic=1,lex
do 50 j=1,3
icoord=icoord+1
if(j.eq.3) then
icode(icoord)=2
c codes synonymous sites
else
icode(icoord)=1
c codes nonsynonymous sites
end if
50 continue
40 continue
if(i.eq.nex) go to 100
go to 10
100 nbp=icoord
c this section calculate the sweep function for each synonymous site
asyn=nex*lex
annons=2*nex*lex
c number of synonymous and nonsynonymous sites
nbp2=nbp/2
c number of basepairs examined (assumes symmetry of effects of NS substitutions w.rt. position)
Back=0.0
do 150 i2=1,nbp
150 Efunc(i2)=0.0
do 110 i1=1,nbp2
if(icode(i1).eq.2) then
c synonymous site is picked
i2=i1-1
do 120 j2=1,i2
c takes all sites to left of chosen site
if(icode(j2).eq.1) then
c nonsynonymous site is chosen
dist=i1-j2
rec=(dist*rec1)+rg*(1-exp(0.0-dist/dg))
c recombination rate with xovers and gene conversion
rs=rec/sa
Evalue=(gamm**(0.0-4*rs))*exp(-2*rs/C)*(1+0.667*((rs/C)**2)+(8*(rs**2)))
x write(9,*) 'bp= ',i1,'dist =',dist,' rec=',rec,' rs= ',rs,' Evalue= ',Evalue
c calculates sweep contribution from chosen nonsyn site
x pause
corfac=(1+6.58*((rs/C)**2))
corfac=corfac**2
c correction for multiple recombination events
Efunc(i1)=Efunc(i1)+Evalue*corfac
c updates sweep function for chosen syn site
end if
120 continue
i3=i1+1
do 130 j3=i3,nbp
c takes all sites to right of chosen site
if(icode(j3).eq.1) then
c nonsynonymous site is chosen
dist=j3-i1
rec=(dist*rec1)+rg*(1-exp(0.0-dist/dg))
c recombination rate with xovers and gene conversion
rs=rec/sa
Evalue=(gamm**(0.0-4*rs))*exp(-2*rs/C)*(1+0.667*((rs/C)**2)+(8*(rs**2)))
c calculates sweep contribution from chosen nonsyn site
corfac=(1+6.58*((rs/C)**2))
corfac=corfac**2
c correction for multiple recombination events
Efunc(i1)=Efunc(i1)+Evalue*corfac
c updates sweep function for chosen syn site
end if
130 continue
end if
110 continue
do 140 k=1,nbp2
if(icode(k).eq.2) then
Back=Back+2*Efunc(k)
end if
140 continue
c accumulates sum of E and its derivative along gene
SN=Back/asyn
c takes mean over all synonymous sites
return
end
subroutine sweeputr(gamm,sa,rec,gcr,dg,lex,lint,L3,L5,nex,SU,B,C)
c summation version of sweep equation for UTRs
real gamm,rec,rg,gcr,dg,Efunc(5000),Back,sa,rs,Evalue,SU,rec1,corfac,B,C
integer lex,lint,nex,icoord,icode(5000),nbp,i,ic
integer L3,L5
rg=gcr*dg
rec1=rec
c lex is length of exon, lint is length of introns, nex is number of exons
c lut3 and lut5 are lengths of respective UTRs
gamm=B*C*gamm
c discounts gamma by BGS effect
c next section codes each bp as nonsyn (1), syn (2) or int (3)
icoord=0
i=0
10 i=i+1
if(i.eq.1) go to 30
if(lint.eq.0) go to 30
do 20 k=1,lint
icoord=icoord+1
icode(icoord)=3
20 continue
c codes intronic sites
30 do 40 ic=1,lex
do 50 j=1,3
icoord=icoord+1
if(j.eq.3) then
icode(icoord)=2
c codes synonymous sites
else
icode(icoord)=1
c codes nonsynonymous sites
end if
50 continue
40 continue
if(i.eq.nex) go to 100
go to 10
100 nbp=icoord
c this section calculate the sweep function for each synonymous site
asyn=nex*lex
c number of synonymous sites
Back=0.0
do 150 i1=1,nbp
150 Efunc(i1)=0.0
do 110 i1=1,nbp
if(icode(i1).eq.2) then
c synonymous site is picked
do 125 j4=1,L5
c takes all 5UTR sites to left of chosen site
dist=i1+j4-1
rec=dist*rec1+rg*(1-exp(0.0-dist/dg))
c recombination rate with xovers and gene conversion
rs=rec/sa
Evalue=(gamm**(0.0-4*rs))*exp(-2*rs/C)*(1+0.667*((rs/C)**2)+(8*(rs**2)))
c contribution from 5UTR sites
corfac=(1+6.58*((rs/C)**2))
corfac=corfac**2
c correction for multiple recombination events
Efunc(i1)=Efunc(i1)+Evalue*corfac
c updates sweep function for chosen syn site
125 continue
do 135 j5=1,L3
c takes all 3UTR sites to right of chosen site
dist=j5+i1
rec=dist*rec1+rg*(1-exp(0.0-dist/dg))
c recombination rate with xovers and gene conversion
rs=rec/sa
Evalue=(gamm**(0.0-4*rs))*exp(-2*rs/C)*(1+0.667*((rs/C)**2)+(8*(rs**2)))
c contribution from 3UTR sites
c
corfac=(1+6.58*((rs/C)**2))
corfac=corfac**2
c correction for multiple recombination events
Efunc(i1)=Efunc(i1)+Evalue*corfac
c updates sweep function for chosen syn site
135 continue
end if
110 continue
do 140 k=1,nbp
if(icode(k).eq.2) then
Back=Back+Efunc(k)
end if
140 continue
c accumulates sum of E along gene
SU=Back/asyn
c takes mean over all synonymous sites
return
end
subroutine sswncorr(adrate,TS,AI,B,ST,pirel)
c calculates correction for effect of sweep duration on relative diversity
c includes neutral BGS effect (b=B1 in paper)
real adrate,TS,ST,pirel,A,B
B1=1.0/B
A=adrate/(B1+adrate)
EM=ST/adrate
write(9,*) ''
write(9,*) 'Mean effect per sweep= ',EM,' A= ',A
pirel=(1-AI*EM+TS*AI*EM-A*(1-EM))/(1.0-A*(1-EM))
pirel=B*pirel
return
end
subroutine series(nmax,omega,S,B)
c series for mean deviation of relative pi over recovery period
c sum of terms in expansion of exp(-xt)[1 - exp(-t)]/t around omega=1
real S,B,ai,x,omega,c
integer i,nmax
S=0.6931
x=omega*B-1.0
k=1
do 10 i=1,nmax
ai=i
c=0.0-(1.0-(0.5**i))*(x**i)/ai
S=S+k*c
k=0-k
del=abs(c/S)
if(del.le.0.000001) then
write(1,*)'Series has converged'
write(1,*) 'i = ',i,' c= ',c,' S= ',S
write(9,*) 'i = ',i,' c= ',c,' S= ',S
pause
go to 15
else
write(9,*) 'i = ',i,' c= ',c,' S= ',S
end if
10 continue
15 return
end
OUTPUT
Program to calculate recurrent sweep effects with BGS
Includes correction for sweep durations
Correction for effect of sweeps on BGS allowed
Correction for coalescence during sweep
Correction for multiple recombination events in summation formula
Includes stochastic phases in fixation times with variance term
sa= 5.000000E-02 pa= 2.210000E-04
gamma for NS mutations= 250.000
Proportion of exonic sites under selection= 0.700000
su= 4.260000E-02 pu= 9.040000E-04
gamma for UTR mutations= 213.000
neutral diversity= 2.394000E-02
crossing over rate= 5.320000E-06
gene conversion rate= 5.320000E-06 mean tract length = 440.000
5-prime UTR length= 190
3-prime UTR length= 280
Number of exons= 5 Length of exons (in codons) = 100
Coding sequence length= 1500.00
Intron length= 100
Interference factor= 0.945000
Rates of adaptive substitutions in absence of BGS
Rate of adaptive NS substitutions per site= 6.249687E-04
Rate of adaptive UTR substitutions= 2.178081E-03
Net rate of adaptive substitutions= 1.67992
Recombination factor= 0.500000
B1= 1.00000 correction factor for B= 1.00000
Integral I= 0.467042
Mean recovery factor (B1*omega*I) = 0.784591
Approximate mean NS sweep effect= 509.563
Approximate NS contribution to sweep coalescent rate= 0.222923
Exact mean NS sweep effect= 314.920
Exact NS contribution to sweep coalescent rate= 0.196815
Approximate mean UTR sweep effect= 48.6323
Approximate UTR5 contribution to sweep coalescent rate= 4.577599E-02
Approximate UTR3 contribution to sweep coalescent rate= 6.014902E-02
Approximate net UTR contribution to sweep coalescent rate= 0.105925
Exact mean UTR sweep effect= 70.6002
Exact UTR contribution to sweep coalescent rate= 0.153773
Approximate sweep coalescent rate (uncorrected) = 0.328848
Approximate coalescence time during sweep= 4.825022E-02
Approximate relative diversity (uncorrected) = 0.752532
Corrected approx. relative diversity outside a sweep= 0.705206
Corrected approx. net relative diversity= 0.683800
Exact sweep coalescent rate= 0.350588
Exact relative diversity (uncorrected) = 0.740418
Exact relative coalescent time during sweep= 4.898342E-02
Corrected exact relative diversity outside a sweep= 0.691014
Corrected exact net relative diversity= 0.668390
Recombination factor= 1.00000
B1= 1.00000 correction factor for B= 1.00000
Integral I= 0.467042
Mean recovery factor (B1*omega*I) = 0.784591
Approximate mean NS sweep effect= 369.373
Approximate NS contribution to sweep coalescent rate= 0.161593
Exact mean NS sweep effect= 227.355
Exact NS contribution to sweep coalescent rate= 0.142090
Approximate mean UTR sweep effect= 25.8219
Approximate UTR5 contribution to sweep coalescent rate= 2.520994E-02
Approximate UTR3 contribution to sweep coalescent rate= 3.103230E-02
Approximate net UTR contribution to sweep coalescent rate= 5.624224E-02
Exact mean UTR sweep effect= 40.0673
Exact UTR contribution to sweep coalescent rate= 8.726988E-02
Approximate sweep coalescent rate (uncorrected) = 0.217835
Approximate coalescence time during sweep= 4.784795E-02
Approximate relative diversity (uncorrected) = 0.821129
Corrected approx. relative diversity outside a sweep= 0.786832
Corrected approx. net relative diversity= 0.770930
Exact sweep coalescent rate= 0.229359
Exact relative diversity (uncorrected) = 0.813432
Exact relative coalescent time during sweep= 4.861765E-02
Corrected exact relative diversity outside a sweep= 0.777838
Corrected exact net relative diversity= 0.761052
Recombination factor= 1.50000
B1= 1.00000 correction factor for B= 1.00000
Integral I= 0.467042
Mean recovery factor (B1*omega*I) = 0.784591
Approximate mean NS sweep effect= 293.359
Approximate NS contribution to sweep coalescent rate= 0.128338
Exact mean NS sweep effect= 179.371
Exact NS contribution to sweep coalescent rate= 0.112101
Approximate mean UTR sweep effect= 16.8337
Approximate UTR5 contribution to sweep coalescent rate= 1.686053E-02
Approximate UTR3 contribution to sweep coalescent rate= 1.980465E-02
Approximate net UTR contribution to sweep coalescent rate= 3.666518E-02
Exact mean UTR sweep effect= 26.6721
Exact UTR contribution to sweep coalescent rate= 5.809392E-02
Approximate sweep coalescent rate (uncorrected) = 0.165003
Approximate coalescence time during sweep= 4.762153E-02
Approximate relative diversity (uncorrected) = 0.858367
Corrected approx. relative diversity outside a sweep= 0.831169
Corrected approx. net relative diversity= 0.818426
Exact sweep coalescent rate= 0.170195
Exact relative diversity (uncorrected) = 0.854558
Exact relative coalescent time during sweep= 4.837124E-02
Corrected exact relative diversity outside a sweep= 0.826766
Corrected exact net relative diversity= 0.813500
Recombination factor= 2.00000
B1= 1.00000 correction factor for B= 1.00000
Integral I= 0.467042
Mean recovery factor (B1*omega*I) = 0.784591
Approximate mean NS sweep effect= 244.969
Approximate NS contribution to sweep coalescent rate= 0.107168
Exact mean NS sweep effect= 149.124
Exact NS contribution to sweep coalescent rate= 9.319800E-02
Approximate mean UTR sweep effect= 12.0698
Approximate UTR5 contribution to sweep coalescent rate= 1.231799E-02
Approximate UTR3 contribution to sweep coalescent rate= 1.397107E-02
Approximate net UTR contribution to sweep coalescent rate= 2.628907E-02
Exact mean UTR sweep effect= 19.2979
Exact UTR contribution to sweep coalescent rate= 4.203231E-02
Approximate sweep coalescent rate (uncorrected) = 0.133458
Approximate coalescence time during sweep= 4.746279E-02
Approximate relative diversity (uncorrected) = 0.882256
Corrected approx. relative diversity outside a sweep= 0.859623
Corrected approx. net relative diversity= 0.848960
Exact sweep coalescent rate= 0.135230
Exact relative diversity (uncorrected) = 0.880879
Exact relative coalescent time during sweep= 4.817919E-02
Corrected exact relative diversity outside a sweep= 0.858087
Corrected exact net relative diversity= 0.847145
Recombination factor= 2.50000
B1= 1.00000 correction factor for B= 1.00000
Integral I= 0.467042
Mean recovery factor (B1*omega*I) = 0.784591
Approximate mean NS sweep effect= 210.974
Approximate NS contribution to sweep coalescent rate= 9.229643E-02
Exact mean NS sweep effect= 128.258
Exact NS contribution to sweep coalescent rate= 8.015741E-02
Approximate mean UTR sweep effect= 9.13051
Approximate UTR5 contribution to sweep coalescent rate= 9.452160E-03
Approximate UTR3 contribution to sweep coalescent rate= 1.043484E-02
Approximate net UTR contribution to sweep coalescent rate= 1.988700E-02
Exact mean UTR sweep effect= 14.6853
Exact UTR contribution to sweep coalescent rate= 3.198568E-02
Approximate sweep coalescent rate (uncorrected) = 0.112183
Approximate coalescence time during sweep= 4.733874E-02
Approximate relative diversity (uncorrected) = 0.899132
Corrected approx. relative diversity outside a sweep= 0.879727
Corrected approx. net relative diversity= 0.870556
Exact sweep coalescent rate= 0.112143
Exact relative diversity (uncorrected) = 0.899165
Exact relative coalescent time during sweep= 4.801809E-02
Corrected exact relative diversity outside a sweep= 0.879852
Corrected exact net relative diversity= 0.870554
SECOND PROGRAM: bgsapprox6
c expected background selection effects with a Haldane mapping function
c Approximate BGS function with gene conversion and gamma distribution of selection coefficients
c Includes repulsion terms
c Linear mapping function used; both NS and UTR selected sites
c Logarithmic increments for the gamma integrals
real beta,tbar1,tbar2,XL1,XL2,XU,gaminteg1,gaminteg2,g,ML,U11,U21
real gamint1,gamint2,U1,U2,u,p1,p2,rfac,rc,x2,gaminteg3,gaminteg4
integer NMAX,ng,nex,lex,lu,lng
character*20 FOUT,FIN
WRITE (9,*) 'Input file?'
READ (9,*) FIN
WRITE (9,*) 'Output file?'
READ (9,*) FOUT
OPEN (2,FILE=FIN)
OPEN (1,FILE=FOUT)
READ (2,*) ng,nex,lex
READ (2,*) nin,lin
READ (2,*) lu,lng
READ (2,*) u
READ (2,*) p1,p2
READ (2,*) tbar1,tbar2
READ (2,*) beta
READ (2,*) g,rc
READ (2,*) XL1,XL2
READ (2,*) XU
READ (2,*) NMAX
WRITE (1,*) 'Approximate BGS integral with gene conversion'
WRITE (1,*) 'Includes terms from initial repulsion association'
WRITE (1,*) 'Gamma distribution of selection coefficients'
WRITE (1,*) 'Both NS and UTR selected sites'
WRITE (1,*) 'Haldane mapping function'
WRITE (1,*) ''
WRITE (1,*) 'No. of genes ',ng
WRITE (1,*) 'No. of exons ',nex,' Length of exons= ',lex
WRITE (1,*) 'Length of UTRs= ',lu
WRITE (1,*) 'No. of introns= ',nin,' Length of introns= ',lin
WRITE (1,*) 'Length of intergenic sequence= ',lng
L=ng*(lu+nex*lex+nin*lin)+(ng-1)*lng
WRITE (1,*) 'Standard crossover rate per bp= ',rc,' Gene conversion parameter= ',g
WRITE (1,*) 'Physical length of region= ',L
WRITE (1,*) ''
WRITE (1,*) 'Mutation rate per bp= ',u
WRITE (1,*) 'Effective proportion of NS deleterious mutations= ',p1
WRITE (1,*) 'Effective proportion of UTR deleterious mutations= ',p2
U11=nex*lex*u*0.700*p1
U21=lu*u*p2
U1=ng*U11
U2=ng*U21
WRITE (1,*) 'NS deleterious mutation rate= ',U1
WRITE (1,*) 'UTR deleterious mutation rate= ',U2
WRITE (1,*) ''
WRITE (1,*) 'Mean heterozygous NS selection coefficient= ',tbar1
WRITE (1,*) 'Mean heterozygous NS selection coefficient= ',tbar2
WRITE (1,*) 'Shape parameter= ',beta
WRITE (1,*) 'Lower bound for NS gamma distribution integral= ',XL1
WRITE (1,*) 'Lower bound for UTR gamma distribution integral= ',XL2
WRITE (1,*) 'Upper bound for both gamma distribution integrals= ',XU
WRITE (1,*) 'Maximum no. of iterations= ',NMAX
WRITE (1,*) ''
WRITE (9,*) 'No. of genes ',ng
WRITE (9,*) 'No. of exons ',nex,' Length of exons= ',lex
WRITE (9,*) 'Length of UTRs= ',lu
WRITE (9,*) 'No. of introns= ',nin,' Length of introns= ',lin
WRITE (9,*) 'Length of intergenic sequence= ',lng
WRITE (9,*) 'Standard crossover rate per bp= ',rc,' Gene conversion parameter= ',g
WRITE (9,*) 'Physical length of region = ',L
WRITE (9,*) ''
WRITE (9,*) 'Mutation rate per bp= ',u
WRITE (1,*) 'Effective proportion of NS deleterious mutations= ',p1
WRITE (1,*) 'Effective proportion of UTR deleterious mutations= ',p2
WRITE (1,*) 'NS deleterious mutation rate= ',U1
WRITE (1,*) 'UTR deleterious mutation rate= ',U2
WRITE (1,*) ''
WRITE (9,*) 'NS deleterious mutation rate= ',U1
WRITE (9,*) 'UTR deleterious mutation rate= ',U2
WRITE (9,*) ''
WRITE (9,*) 'Mean heterozygous NS selection coefficient= ',tbar1
WRITE (9,*) 'Mean heterozygous NS selection coefficient= ',tbar2
WRITE (9,*) 'Shape parameter= ',beta
WRITE (9,*) 'Lower bound for NS gamma distribution integral= ',XL1
WRITE (9,*) 'Lower bound for UTR gamma distribution integral= ',XL2
WRITE (9,*) 'Upper bound for both gamma distribution integrals= ',XU
WRITE (9,*) 'Maximum no. of iterations= ',NMAX
WRITE (9,*) ''
call gamf1(beta,NMAX,gamint1,XL1,XU)
c calculates integral of kernel of gamma distribution from truncation points XL1 to XU
x WRITE (1,*) 'Integral of NS gamma distribution kernel= ',gamint1
x WRITE (1,*) ''
WRITE (9,*) 'Integral of NS gamma distribution kernel= ',gamint1
WRITE (9,*) ''
call gamf1(beta,NMAX,gamint2,XL2,XU)
c calculates integral of kernel of gamma distribution from truncation points XL2 to XU
x WRITE (1,*) 'Integral of UTR gamma distribution kernel= ',gamint2
x WRITE (1,*) ''
WRITE (9,*) 'Integral of UTR gamma distribution kernel= ',gamint2
WRITE (9,*) ''
call gamf3(beta,tbar1,NMAX,gaminteg3,XL1,XU,g,U11)
c calculates integral for mean effective number of NS mutations per gene
anbar1=gaminteg3/gamint1
call gamf3(beta,tbar2,NMAX,gaminteg4,XL2,XU,g,U21)
c calculates integral for mean effective number of UTR mutations per gene
anbar2=gaminteg4/gamint2
WRITE (1,*) 'Mean effective numbers of deleterious mutations per gene'
WRITE (1,*) 'NS sites ',anbar1,' UTR sites ',anbar2
WRITE (1,*) ''
WRITE (9,*) 'Mean effective numbers of deleterious mutations per gene'
WRITE (9,*) 'NS sites ',anbar1,' UTR sites ',anbar2
WRITE (9,*) ''
pause
10 WRITE (9,*) 'Crossing over factor?'
READ (9,*) rfac
if(rfac.eq.0) go to 20
ML=rfac*rc*L
c map length of region in Morgans
WRITE (1,*) ''
WRITE (1,*) ''
WRITE (1,*) 'Crossing over factor= ',rfac
WRITE (1,*) 'Map length of region= ',ML
WRITE (1,*) ''
WRITE (9,*) ''
WRITE (9,*) 'Map length of region= ',ML
WRITE (9,*) ''
x2=exp(-ML)
call gamf2(beta,tbar1,NMAX,gaminteg1,XL1,XU,g,x2)
c calculates integral of NS site gene conversion function over gamma distribution
x WRITE (1,*) 'Integral of gene conversion function for NS sites= ',gaminteg1
x WRITE (1,*) ''
WRITE (9,*) 'Integral of gene conversion function for NS sites= ',gaminteg1
WRITE (9,*) ''
bgsinteg1=gaminteg1/gamint1
x WRITE (1,*) 'Integral for NS sites= ',bgsinteg1
x WRITE (9,*) 'Integral for NS sites= ',bgsinteg1
call gamf2(beta,tbar2,NMAX,gaminteg2,XL2,XU,g,x2)
c calculates integral of UTR site gene conversion function over gamma distribution
x WRITE (1,*) 'Integral of gene conversion function for UTR sites= ',gaminteg2
x WRITE (1,*) ''
WRITE (9,*) 'Integral of gene conversion function for UTR sites= ',gaminteg2
WRITE (9,*) ''
bgsinteg2=gaminteg2/gamint2
x WRITE (1,*) 'Integral for UTR sites= ',bgsinteg2
x WRITE (9,*) 'Integral for UTR sites= ',bgsinteg2
E=((U1*bgsinteg1)+(U2*bgsinteg2))/ML
B=exp(0.0-E)
WRITE (1,*) 'E= ',E,' B= ',B
WRITE (9,*) 'E= ',E,' B= ',B
pause
go to 10
20 end
FUNCTION gcinteg1(g,t,x)
c calculates approximate BGS integral with gene conversion
c coupling term
real a,b,g,t,x
a=g*(1.0-t)+0.5*(1.0+t)
b=0.0-0.5*(1.0-t)
gcinteg1=log(a+b*x)-log(x)
gcinteg1=gcinteg1/(a**2)
gcinteg1=gcinteg1-(1.0/(a*(a+b*x)))
x write(9,*) 'gcint= ',gcinteg1
x pause
RETURN
END
FUNCTION gcinteg2(g,t,x)
c calculates approximate BGS integral with gene conversion
c repulsion terms
real d,e,g,t,x
a=g*(1.0-t)+0.5*(1.0+t)
b=0.0-0.5*(1.0-t)
c=a+b*x
d=1.0+2*g*(1.0-t)
e=t-1.0
e2b=(e/b)**2
gcinteg2=0.0-2*(1.0-t)*d/(b*c)
gcinteg2=gcinteg2-(a*e2b/c)
gcinteg2=gcinteg2-(e2b*log(c))
x write(9,*) 'gcint2= ',gcinteg2
x pause
RETURN
END
subroutine gamf1(beta,NMAX,gaminteg,XL,XU)
c integrates kernel of gamma distribution from truncation points XL to XU
c uses x/alpha as integrand
real DX(1000000),beta,gaminteg,gaminteg0,gaminteg1,XL,XU,EPS
EPS=0.001
gaminteg0=0.0
X1=XL
IF(XL.LE.EPS) THEN
gaminteg0=((EPS**beta)-(XL**beta))/beta
c this is the integral up to X=EPS (avoids very large integrands near X=0)
X1=EPS
END IF
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'Truncated Gamma integral does not converge'
WRITE (1,*) 'Truncated Gamma integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
25 gaminteg1=gaminteg1+EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg=gaminteg0+gaminteg1
x WRITE(1,*) 'Gamma integral- truncated ',gaminteg
x WRITE(9,*) 'Gamma integral- truncated ',gaminteg
x WRITE(1,*) ''
return
end
subroutine gamf2(beta,tbar,NMAX,gaminteg2,XL,XU,g,x2)
c integrates gene conversion integral over gamma distribution from truncation points XL to XU
c uses gene conversion function x gamma distribution kernel as integrand
real DX(1000000),beta,gaminteg,gaminteg2,XL,XU,g,x1,x2,tbar
integer NMAX,N1
X1=XL
x1=1.0
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'BGS Integral does not converge'
WRITE (1,*) 'BGS Integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
t=tbar*X/beta
c obtains t corresponding to standardised gamma variate
d=1+2*g*(1-t)
e=t-1.0
d2=d**2
if(t.ge.0.999) then
t=1.0
end if
FG1=gcinteg1(g,t,x1)
if(t.ge.0.999) then
FG1=2*FG1
go to 15
end if
FG1=FG1*(1+d2)+gcinteg2(g,t,x1)
x write(9,*) 'FG1= ',FG1
c BGS integral for middle of region
15 FG2=gcinteg1(g,t,x2)
if(t.ge.0.999) then
FG2=2*FG2
go to 35
end if
FG2=FG2*(1+d2)+gcinteg2(g,t,x2)
c BGSintegral for end of region (x2=exp(-ML))
x write(9,*) 'FG2= ',FG2
35 FG=t*(FG2-FG1)
x22 write(9,*) 't= ',t,'FG= ',FG
x write(9,*) ''
x pause
25 gaminteg1=gaminteg1+FG*EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg2=gaminteg1
x WRITE(1,*) 'Integral= ',gaminteg2
WRITE(9,*) 'Integral= ',gaminteg2
x WRITE(1,*) ''
return
end
subroutine gamf3(beta,tbar,NMAX,gaminteg3,XL,XU,g,U)
c integrates mean number of mutations over gamma distribution from truncation points XL to XU
real DX(1000000),beta,gaminteg,gaminteg0,gaminteg3,XL,XU,g,U,tbar
integer NMAX,N1
x EPS=0.001
gaminteg0=0.0
X1=XL
x IF(XL.LE.EPS) THEN
x gaminteg0=((EPS**beta)-(XL**beta))/beta
c this is the integral up to X=EPS (avoids very large integrands near X=0)
x X1=EPS
x END IF
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'BGS Integral does not converge'
WRITE (1,*) 'BGS Integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
t=tbar*X/beta
c obtains t corresponding to standardised gamma variate
if(t.ge.0.999) then
t=1.0
end if
FG=U/t
c mean number of mutations for selection coefficient t
x write(9,*) 't= ',t,'FG= ',FG
x write(9,*) ''
x pause
25 gaminteg1=gaminteg1+FG*EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg3=gaminteg0+gaminteg1
x WRITE(1,*) 'Integral= ',gaminteg3
WRITE(9,*) 'Integral= ',gaminteg3
x WRITE(1,*) ''
return
end
subroutine delta(DX,N1,XL,XU)
c calculates logarithmic increaments
real DX(1000000),XL,XU
integer N1
an=N1
ak=log(XU/XL)/an
ar=EXP(ak)
x1=XL
do 10 i=1,N1
x2=x1
x1=x2*ar
10 DX(i)=x1-x2
c calculates increments
RETURN
END
OUTPUT
Approximate BGS integral with gene conversion
Includes terms from initial repulsion association
Gamma distribution of selection coefficients
Both NS and UTR selected sites
Haldane mapping function
No. of genes 20
No. of exons 5 Length of exons= 300
Length of UTRs= 470
No. of introns= 4 Length of introns= 100
Length of intergenic sequence= 2000
Standard crossover rate per bp= 5.320000E-06 Gene conversion parameter= 2.340800E-03
Physical length of region= 85400
Mutation rate per bp= 2.390000E-06
Effective proportion of NS deleterious mutations= 0.871500
Effective proportion of UTR deleterious mutations= 0.693800
NS deleterious mutation rate= 4.374059E-02
UTR deleterious mutation rate= 1.558691E-02
Mean heterozygous NS selection coefficient= 0.200000
Mean heterozygous NS selection coefficient= 1.100000E-02
Shape parameter= 0.300000
Lower bound for NS gamma distribution integral= 7.500000E-04
Lower bound for UTR gamma distribution integral= 1.364000E-02
Upper bound for both gamma distribution integrals= 10.0000
Maximum no. of iterations= 500000
Effective proportion of NS deleterious mutations= 0.871500
Effective proportion of UTR deleterious mutations= 0.693800
NS deleterious mutation rate= 4.374059E-02
UTR deleterious mutation rate= 1.558691E-02
Mean effective numbers of deleterious mutations per gene
NS sites 0.271933 UTR sites 0.261301
Crossing over factor= 0.500000
Map length of region= 0.227164
E= 0.283571 B= 0.753089
Crossing over factor= 1.00000
Map length of region= 0.454328
E= 0.178872 B= 0.836213
Crossing over factor= 1.50000
Map length of region= 0.681492
E= 0.137335 B= 0.871678
Crossing over factor= 2.00000
Map length of region= 0.908656
E= 0.114645 B= 0.891682
Crossing over factor= 2.50000
Map length of region= 1.13582
E= 0.100232 B= 0.904627
THIRD PROGRAM: bgsapprox4
c Approximate BGS function with gene conversion and gamma distribution of selection coefficients
c Includes repulsion terms and approximation for small g
c Linear map used; both NS and UTR selected sites
c Logarithmic increments for the gamma integrals
real beta,tbar1,tbar2,XL1,XL2,XU,gaminteg1,gaminteg2,g,ML,U11,U21
real gamint1,gamint2,U1,U2,u,p1,p2,rfac,rc,x2,gaminteg3,gaminteg4
integer NMAX,ng,nex,lex,lu,lng
character*20 FOUT,FIN
WRITE (9,*) 'Input file?'
READ (9,*) FIN
WRITE (9,*) 'Output file?'
READ (9,*) FOUT
OPEN (2,FILE=FIN)
OPEN (1,FILE=FOUT)
READ (2,*) ng,nex,lex
READ (2,*) nin,lin
READ (2,*) lu,lng
READ (2,*) u
READ (2,*) p1,p2
READ (2,*) tbar1,tbar2
READ (2,*) beta
READ (2,*) g,rc
READ (2,*) XL1,XL2
READ (2,*) XU
READ (2,*) NMAX
WRITE (1,*) 'Approximate BGS integral with gene conversion'
WRITE (1,*) 'Includes terms from initial repulsion association'
WRITE (1,*) 'Gamma distribution of selection coefficients'
WRITE (1,*) 'Both NS and UTR selected sites'
WRITE (1,*) 'Linear map'
WRITE (1,*) ''
WRITE (1,*) 'No. of genes ',ng
WRITE (1,*) 'No. of exons ',nex,' Length of exons= ',lex
WRITE (1,*) 'Length of UTRs= ',lu
WRITE (1,*) 'No. of introns= ',nin,' Length of introns= ',lin
WRITE (1,*) 'Length of intergenic sequence= ',lng
L=ng*(lu+nex*lex+nin*lin)+(ng-1)*lng
WRITE (1,*) 'Standard crossover rate per bp= ',rc,' Gene conversion parameter= ',g
WRITE (1,*) 'Physical length of region= ',L
WRITE (1,*) ''
WRITE (1,*) 'Mutation rate per bp= ',u
WRITE (1,*) 'Effective proportion of NS deleterious mutations= ',p1
WRITE (1,*) 'Effective proportion of UTR deleterious mutations= ',p2
U11=nex*lex*u*0.7*p1
U21=lu*u*p2
U1=ng*U11
U2=ng*U21
WRITE (1,*) 'NS deleterious mutation rate= ',U1
WRITE (1,*) 'UTR deleterious mutation rate= ',U2
WRITE (1,*) ''
WRITE (1,*) 'Mean heterozygous NS selection coefficient= ',tbar1
WRITE (1,*) 'Mean heterozygous NS selection coefficient= ',tbar2
WRITE (1,*) 'Shape parameter= ',beta
WRITE (1,*) 'Lower bound for NS gamma distribution integral= ',XL1
WRITE (1,*) 'Lower bound for UTR gamma distribution integral= ',XL2
WRITE (1,*) 'Upper bound for both gamma distribution integrals= ',XU
WRITE (1,*) 'Maximum no. of iterations= ',NMAX
WRITE (1,*) ''
WRITE (9,*) 'No. of genes ',ng
WRITE (9,*) 'No. of exons ',nex,' Length of exons= ',lex
WRITE (9,*) 'Length of UTRs= ',lu
WRITE (9,*) 'No. of introns= ',nin,' Length of introns= ',lin
WRITE (9,*) 'Length of intergenic sequence= ',lng
WRITE (9,*) 'Standard crossover rate per bp= ',rc,' Gene conversion parameter= ',g
WRITE (9,*) 'Physical length of region = ',L
WRITE (9,*) ''
WRITE (9,*) 'Mutation rate per bp= ',u
WRITE (1,*) 'Effective proportion of NS deleterious mutations= ',p1
WRITE (1,*) 'Effective proportion of UTR deleterious mutations= ',p2
WRITE (1,*) ''
WRITE (9,*) 'NS deleterious mutation rate= ',U1
WRITE (9,*) 'UTR deleterious mutation rate= ',U2
WRITE (9,*) ''
WRITE (9,*) 'Mean heterozygous NS selection coefficient= ',tbar1
WRITE (9,*) 'Mean heterozygous UTR selection coefficient= ',tbar2
WRITE (9,*) 'Shape parameter= ',beta
WRITE (9,*) 'Lower bound for NS gamma distribution integral= ',XL1
WRITE (9,*) 'Lower bound for UTR gamma distribution integral= ',XL2
WRITE (9,*) 'Upper bound for both gamma distribution integrals= ',XU
WRITE (9,*) 'Maximum no. of iterations= ',NMAX
WRITE (9,*) ''
call gamf1(beta,NMAX,gamint1,XL1,XU)
c calculates integral of kernel of gamma distribution from truncation points XL1 to XU
x WRITE (1,*) 'Integral of NS gamma distribution kernel= ',gamint1
x WRITE (1,*) ''
WRITE (9,*) 'Integral of NS gamma distribution kernel= ',gamint1
WRITE (9,*) ''
call gamf1(beta,NMAX,gamint2,XL2,XU)
c calculates integral of kernel of gamma distribution from truncation points XL2 to XU
x WRITE (1,*) 'Integral of UTR gamma distribution kernel= ',gamint2
x WRITE (1,*) ''
WRITE (9,*) 'Integral of UTR gamma distribution kernel= ',gamint2
WRITE (9,*) ''
call gamf3(beta,tbar1,NMAX,gaminteg3,XL1,XU,g,U11)
c calculates integral for mean effective number of NS mutations per gene
anbar1=gaminteg3/gamint1
call gamf3(beta,tbar2,NMAX,gaminteg4,XL2,XU,g,U21)
c calculates integral for mean effective number of UTR mutations per gene
anbar2=gaminteg4/gamint2
WRITE (1,*) 'Mean effective numbers of deleterious mutations per gene'
WRITE (1,*) 'NS sites ',anbar1,' UTR sites ',anbar2
WRITE (1,*) ''
WRITE (9,*) 'Mean effective numbers of deleterious mutations per gene'
WRITE (9,*) 'NS sites ',anbar1,' UTR sites ',anbar2
WRITE (9,*) ''
tbar1=p1*tbar1
tbar2=p2*tbar2
c adjusts mean selection coefficients for effective proportion selected
VA=2*(U1*tbar1+U2*tbar2)
WRITE (1,*) 'Additive variance in fitness= ',VA
WRITE (1,*) ''
WRITE (9,*) 'Additive variance in fitness= ',VA
WRITE (9,*) ''
pause
10 WRITE (9,*) 'Crossing over factor?'
READ (9,*) rfac
if(rfac.eq.0) go to 20
ML=rfac*rc*L
c map length of region in Morgans
WRITE (1,*) ''
WRITE (1,*) ''
WRITE (1,*) 'Crossing over factor= ',rfac
WRITE (1,*) 'Map length of region= ',ML
WRITE (1,*) ''
WRITE (9,*) ''
WRITE (9,*) 'Map length of region= ',ML
WRITE (9,*) ''
x2=0.5*ML
call gamf2(beta,tbar1,NMAX,gaminteg1,XL1,XU,g,x2)
c calculates integral of NS site gene conversion function over gamma distribution
x WRITE (1,*) 'Integral of gene conversion function for NS sites= ',gaminteg1
x WRITE (1,*) ''
WRITE (9,*) 'Integral of gene conversion function for NS sites= ',gaminteg1
WRITE (9,*) ''
bgsinteg1=gaminteg1/gamint1
x WRITE (1,*) 'Integral for NS sites= ',bgsinteg1
x WRITE (9,*) 'Integral for NS sites= ',bgsinteg1
call gamf2(beta,tbar2,NMAX,gaminteg2,XL2,XU,g,x2)
c calculates integral of UTR site gene conversion function over gamma distribution
x WRITE (1,*) 'Integral of gene conversion function for UTR sites= ',gaminteg2
x WRITE (1,*) ''
WRITE (9,*) 'Integral of gene conversion function for UTR sites= ',gaminteg2
WRITE (9,*) ''
bgsinteg2=gaminteg2/gamint2
x WRITE (1,*) 'Integral for UTR sites= ',bgsinteg2
x WRITE (9,*) 'Integral for UTR sites= ',bgsinteg2
E=((U1*bgsinteg1)+(U2*bgsinteg2))/ML
B=exp(0.0-E)
WRITE (1,*) 'Exact result with repulsion terms'
WRITE (1,*) 'E1= ',E,' B= ',B
WRITE (9,*) 'Exact result with repulsion terms'
WRITE (9,*) 'E1= ',E,' B= ',B
efac1=tbar1/(g+tbar1)
efac1=efac1*(1-(g*tbar1)/(beta*(g+tbar1)**2))
efac2=tbar2/(g+tbar2)
efac2=efac2*(1-(g*tbar2)/(beta*(g+tbar2)**2))
Eapp1=2*(U1*efac1+U2*efac2)/ML
Bapp1=exp(0.0-Eapp1)
c approximation ignoring repulsion contribution
WRITE (1,*) ''
WRITE (1,*) 'Approximation without repulsion term'
WRITE (1,*) 'E= ',Eapp1,' B= ',Bapp1
WRITE (1,*) ''
WRITE (9,*) ''
WRITE (9,*) 'Approximation without repulsion term'
WRITE (9,*) 'efac1 = ', efac1,' efac2= ',efac2
WRITE (9,*) 'E= ',Eapp1,' B= ',Bapp1
WRITE (9,*) ''
WRITE (1,*) 'Approximation with repulsion term'
E=Eapp1+VA
B=exp(-E)
WRITE (1,*) 'E = ',E,' B= ',B
WRITE (1,*) ''
WRITE (9,*) 'Approximation with repulsion term'
WRITE (9,*) 'E = ',E,' B= ',B
WRITE (9,*) ''
pause
go to 10
20 end
FUNCTION gcinteg1(g,t,x)
c calculates approximate Nordborg BGS integral with gene conversion
c coupling term
real a,b,g,t,x
a=t+g*(1.0-t)
b=1.0-t
if(b.le.0.0001) then
gcinteg1=x
else
gcinteg1=0.0-1.0/(b*(a+b*x))
end if
x write(9,*) 'gcint1= ',gcinteg1
x pause
RETURN
END
FUNCTION gcinteg2(g,t,x)
c calculates approximate repulsion BGS integral with gene conversion
real d,e,g,t,x
a=t+g*(1.0-t)
b=1.0-t
c=a+b*x
cl=log(c)
d=t+2*g*(1.0-t)
e=2*b
e2b3=(e**2)/(b**3)
gcinteg2=(2*d*e/(b**2))*(cl+(a/c))
gcinteg2=gcinteg2+e2b3*(c-2*a*cl-(a**2)/c)
x write(9,*) 'gcint2= ',gcinteg2
x pause
RETURN
END
subroutine gamf1(beta,NMAX,gaminteg,XL,XU)
c integrates kernel of gamma distribution from truncation points XL to XU
c uses x/alpha as integrand
real DX(1000000),beta,gaminteg,gaminteg0,gaminteg1,XL,XU,EPS
EPS=0.001
gaminteg0=0.0
X1=XL
IF(XL.LE.EPS) THEN
gaminteg0=((EPS**beta)-(XL**beta))/beta
c this is the integral up to X=EPS (avoids very large integrands near X=0)
X1=EPS
END IF
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'Truncated Gamma integral does not converge'
WRITE (1,*) 'Truncated Gamma integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
25 gaminteg1=gaminteg1+EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg=gaminteg0+gaminteg1
x WRITE(1,*) 'Gamma integral- truncated ',gaminteg
x WRITE(9,*) 'Gamma integral- truncated ',gaminteg
x WRITE(1,*) ''
return
end
subroutine gamf2(beta,tbar,NMAX,gaminteg2,XL,XU,g,x2)
c integrates gene conversion integral over gamma distribution from truncation points XL to XU
c uses gene conversion function x gamma distribution kernel as integrand
real DX(1000000),beta,gaminteg,gaminteg2,XL,XU,g,x1,x2,tbar
integer NMAX,N1
X1=XL
x1=0.0
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'BGS Integral does not converge'
WRITE (1,*) 'BGS Integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
t=tbar*X/beta
c obtains t corresponding to standardised gamma variate
d=t+2*g*(1-t)
d2=d**2
if(t.ge.0.999) then
t=1.0
end if
FG1=gcinteg1(g,t,x1)
if(t.ge.0.999) then
FG1=2*FG1
go to 15
end if
FG1=FG1*(1+d2)+gcinteg2(g,t,x1)
x write(9,*) 'FG1= ',FG1
c BGS integral for middle of region
15 FG2=gcinteg1(g,t,x2)
if(t.ge.0.999) then
FG2=2*FG2
go to 35
end if
FG2=FG2*(1+d2)+gcinteg2(g,t,x2)
c BGSintegral for end of region (x2=exp(-ML))
x write(9,*) 'FG2= ',FG2
35 FG=2*t*(FG2-FG1)
x22 write(9,*) 't= ',t,'FG= ',FG
x write(9,*) ''
x pause
25 gaminteg1=gaminteg1+FG*EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg2=gaminteg1
x WRITE(1,*) 'Integral= ',gaminteg2
WRITE(9,*) 'Integral= ',gaminteg2
x WRITE(1,*) ''
return
end
subroutine gamf3(beta,tbar,NMAX,gaminteg3,XL,XU,g,U)
c integrates mean number of mutations over gamma distribution from truncation points XL to XU
real DX(1000000),beta,gaminteg,gaminteg0,gaminteg3,XL,XU,g,U,tbar
integer NMAX,N1
x EPS=0.001
gaminteg0=0.0
X1=XL
x IF(XL.LE.EPS) THEN
x gaminteg0=((EPS**beta)-(XL**beta))/beta
c this is the integral up to X=EPS (avoids very large integrands near X=0)
x X1=EPS
x END IF
10 gaminteg=0.0
N1=5
100 N1=2*N1
AN=N1
IF (N1.GT.NMAX) THEN
WRITE (9,*) 'BGS Integral does not converge'
WRITE (1,*) 'BGS Integral does not converge'
WRITE (1,*) ''
gaminteg1=gaminteg
GO TO 400
END IF
call delta(DX,N1,XL,XU)
gaminteg1=0.0
DO 50 J=1,N1
IF (J.EQ.1) THEN
X=X1+DX(J)/2.0
GO TO 25
END IF
X=X+DX(J)
IF (X.GT.XU) GO TO 200
t=tbar*X/beta
c obtains t corresponding to standardised gamma variate
if(t.ge.0.999) then
t=1.0
end if
FG=U/t
c mean number of mutations for selection coefficient t
x write(9,*) 't= ',t,'FG= ',FG
x write(9,*) ''
x pause
25 gaminteg1=gaminteg1+FG*EXP(-X)*(X**(beta-1))*DX(J)
50 continue
del=(gaminteg-gaminteg1)/gaminteg1
200 IF (ABS(del).LT.0.001) GO TO 400
WRITE(9,*) 'Integral iterations',N1
gaminteg=gaminteg1
GO TO 100
400 gaminteg3=gaminteg0+gaminteg1
x WRITE(1,*) 'Integral= ',gaminteg3
WRITE(9,*) 'Integral= ',gaminteg3
x WRITE(1,*) ''
return
end
subroutine delta(DX,N1,XL,XU)
c calculates logarithmic increaments
real DX(1000000),XL,XU
integer N1
an=N1
ak=log(XU/XL)/an
ar=EXP(ak)
x1=XL
do 10 i=1,N1
x2=x1
x1=x2*ar
10 DX(i)=x1-x2
c calculates increments
RETURN
END
OUTPUT
Approximate BGS integral with gene conversion
Includes terms from initial repulsion association
Gamma distribution of selection coefficients
Both NS and UTR selected sites
Linear map
No. of genes 20
No. of exons 5 Length of exons= 300
Length of UTRs= 470
No. of introns= 4 Length of introns= 100
Length of intergenic sequence= 2000
Standard crossover rate per bp= 5.320000E-06 Gene conversion parameter= 2.340800E-03
Physical length of region= 85400
Mutation rate per bp= 2.390000E-06
Effective proportion of NS deleterious mutations= 0.871500
Effective proportion of UTR deleterious mutations= 0.693800
NS deleterious mutation rate= 4.374059E-02
UTR deleterious mutation rate= 1.558691E-02
Mean heterozygous NS selection coefficient= 0.200000
Mean heterozygous NS selection coefficient= 1.100000E-02
Shape parameter= 0.300000
Lower bound for NS gamma distribution integral= 5.475000E-04
Lower bound for UTR gamma distribution integral= 9.955000E-03
Upper bound for both gamma distribution integrals= 10.0000
Maximum no. of iterations= 1000000
Effective proportion of NS deleterious mutations= 0.871500
Effective proportion of UTR deleterious mutations= 0.693800
Mean effective numbers of deleterious mutations per gene
NS sites 0.335639 UTR sites 0.320620
Additive variance in fitness= 1.548588E-02
Crossing over factor= 0.500000
Map length of region= 0.227164
Exact result with repulsion terms
E1= 0.269976 B= 0.763398
Approximation without repulsion term
E= 0.405573 B= 0.666595
Approximation with repulsion term
E = 0.421059 B= 0.656351
Crossing over factor= 1.00000
Map length of region= 0.454328
Exact result with repulsion terms
E1= 0.165661 B= 0.847333
Approximation without repulsion term
E= 0.202786 B= 0.816453
Approximation with repulsion term
E = 0.218272 B= 0.803906
Crossing over factor= 2.00000
Map length of region= 0.908656
Exact result with repulsion terms
E1= 0.102188 B= 0.902860
Approximation without repulsion term
E= 0.101393 B= 0.903578
Approximation with repulsion term
E = 0.116879 B= 0.889693
Crossing over factor= 2.50000
Map length of region= 1.13582
Exact result with repulsion terms
E1= 8.802607E-02 B= 0.915737
Approximation without repulsion term
E= 8.111459E-02 B= 0.922088
Approximation with repulsion term
E = 9.660047E-02 B= 0.907919
FIFTH PROGRAM: dispsim4
c simulation of interference between adaptive substitutions
c substitutions with censoring of overlapping ones
CHARACTER*20 fout
CHARACTER*20 fin
real Ts,Tsamp,subrate,pint,tsub1,tsub2
integer nrep,nsub1(10000),nsub2(10000),isub,NX
write(2,*) 'Program for recurrent sweeps with population size change'
write(2,*) ''
write(2,*) 'Time is scaled by 2Ne'
write(2,*) ''
write (9,*) 'Input file?'
read (9,*) fin
open(1,file=fin)
write (9,*) 'Output file?'
read (9,*) fout
open(2,file=fout)
read (1,*) nrep
write(2,*) 'Number of replicates= ',nrep
read (1,*) Ts
write(2,*) 'Sweep duration= ',Ts
read (1,*) Tsamp
write(2,*) 'Duration of sampling= ',Tsamp
read (1,*) subrate
write(2,*) 'Rate of substitutions= ',subrate
write(9,*) 'pint=?'
read(9,*) pint
am1=subrate*Tsamp
write(2,*) 'Expected number of substitutions= ',am1
write(2,*) 'Prob. of interference for overlapping substns.= ',pint
write(2,*) ''
pc=1-exp(0.0-pint*Ts)
write(2,*) 'Prob. of interference event per substn.= ',pc
pct=am1*pint*Ts
write(2,*) 'Expected net number of interference events= ',pct
write(2,*) ''
write(9,*) 'Random number seed?'
read(9,*) NX
do 5 i1=1,1000
nsub1(i1)=0
5 nsub2(i1)=0
c initialises numbers of substitutions per replicate and removal indicator
s1=0
s2=0
ss1=0
ss2=0
c initialises sums and sums of squares of substitution counts
do 20 i=1,nrep
Ttot=0.0
tsub2=0.0
isub=0
10 call subtime(tsub1,subrate,NX)
c obtains time to next substitution
Ttot=Ttot+tsub1
if(Ttot.ge.Tsamp) go to 30
c ends sampling
nsub1(i)=nsub1(i)+1
nsub2(i)=nsub2(i)+1
x write(9,*) ''
x write(9,*) 'Replicate= ',i
x write(9,*) 'time to new substitution= ',tsub1
x write(9,*) 'Number of substitutions= ',nsub1(i)
x write(9,*) 'Number of surviving substitutions = ',nsub2(i)
x write(9,*) ''
x pause
if(nsub1(i).eq.1) go to 10
c no interference possible with one substitution
x write(9,*) 'isub= ',isub
if(isub.eq.1) then
c deals with case when previous substitution was removed
tsub2=tsub2+tsub1
c time since previous surviving substitution
if(tsub2.le.Ts) then
c new substitution lies within time of previous surviving one
x write(9,*) 'Candidate for removal'
rn=RAND(NX)
if(rn.le.pint) then
c new substitution is removed
x write(9,*) 'New substitution is removed'
nsub2(i)=nsub2(i)-1
isub=1
tsub2=tsub2+tsub1
else
c new substitution survives
tsub2=0.0
isub=0
end if
go to 10
end if
end if
tsub2=0.0
isub=0
c deals with case when previous substitution survived
if(tsub1.le.Ts) then
c new substitution lies within time of previous one
x write(9,*) 'Candidate for removal'
rn=RAND(NX)
if(rn.le.pint) then
c new substitution is removed
x write(9,*) 'New substitution is removed'
nsub2(i)=nsub2(i)-1
isub=1
tsub2=tsub1
end if
c indicates removal of new substitution
end if
go to 10
30 s1=s1+nsub1(i)
s2=s2+nsub2(i)
ss1=ss1+nsub1(i)**2
ss2=ss2+nsub2(i)**2
20 continue
anrep=nrep
amean1=s1/anrep
amean2=s2/anrep
var1=(ss1-(s1**2)/anrep)/(anrep-1)
var2=(ss2-(s2**2)/anrep)/(anrep-1)
r1=var1/amean1
r2=var2/(amean2)
write(2,*) 'Mean number of substitutions= ',amean1
write(2,*) 'Variance= ',var1
write(2,*) 'Variance/mean ratio= ',r1
write(2,*) ''
write(2,*) 'Mean number of surviving substitutions= ',amean2
write(2,*) 'Variance= ',var2
write(2,*) 'Variance/mean ratio= ',r2
write(2,*) ''
r=r2/r1
write(2,*) 'Ratio of var/mean ratios= ',r
prem=1-(amean2/amean1)
write(2,*) ''
write(2,*) 'Proportion of substitutions removed= ',prem
write(9,*) 'Mean number of substitutions= ',amean1
write(9,*) 'Variance= ',var1
write(9,*) 'Variance/mean ratio= ',r1
write(9,*) ''
write(9,*) 'Mean number of surviving substitutions= ',amean2
write(9,*) 'Variance= ',var2
pause
200 close(1)
end
c ------------------------------------
subroutine subtime(tsub,subrate,NX)
c time to next substitution event
real tsub,rn
integer NX
rn=RAND(NX)
c chooses uniform random number
tsub=0.0-log(1-rn)/subrate
c exponential random deviate representing time integral of substitution rate
x write(2,*) 'random no.= ',rn
x write(2,*) 'tsub = ',tsub
x pause
return
end
c ------------------------------------
FUNCTION RAND(NX)
C RETURNS A UNIFORM RANDOM NO.
NY=SHIFT(NX,16)
NY=NY+NX+NX+NX
NZ=SHIFT(NY,-31)
NX=SHIFT(NZ,31)
NX=NY-NX
AX=NX/2.147484E9
RAND=AX
RETURN
END
OUTPUT
Number of replicates= 1400
Sweep duration= 0.100000
Duration of sampling= 4.00000
Rate of substitutions= 1.77000
Expected number of substitutions= 7.08000
Prob. of interference for overlapping substns.= 0.350000
Prob. of interference event per substn.= 3.439456E-02
Expected net number of interference events= 0.247800
Mean number of substitutions= 7.03143
Variance= 7.16985
Variance/mean ratio= 1.01969
Mean number of surviving substitutions= 6.64429
Variance= 5.96487
Variance/mean ratio= 0.897745
Ratio of var/mean ratios= 0.880413
Proportion of substitutions removed= 5.505890E-02
PKK \ PK
|X
Campos-Chwth-FileS3.htmUT øføf
Simulation Results: |
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Fixations
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Relative |
Relative |
Total number of fixations: |
Fixations after 8N gens: |
Total number of fixations: |
Fixations after 8N gens: |
Chr |
Model |
Number of |
Number of |
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crossover |
gene conv. |
NS mutations |
NS mutations |
UTR mutation |
UTR mutations |
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genes |
replicate |
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rate |
rate |
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runs |
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Autosome |
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0.5 |
1 |
233.550 (227.951, 239.446) |
96.850 (94.000, 99.850) |
362.950 (356.100, 370.146) |
149.600 (145.400, 154.100) |
A |
BGS-SSW |
70 |
20 |
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0.5 |
1 |
307.150 (296.801, 315.899) |
128.100 (123.703, 132.549) |
492.750 (487.501, 497.749) |
206.000 (200.703, 211.349) |
A |
SSW |
70 |
20 |
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0.5 |
1 |
408.650 (400.501, 416.849) |
173.250 (167.301, 179.699) |
633.750 (621.708, 644.799) |
267.150 (258.811, 275.700) |
A |
BGS-SSW |
140 |
20 |
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0.5 |
1 |
617.850 (605.956, 629.349) |
263.050 (256.108, 269.846) |
952.050 (939.151, 964.799) |
403.400 (395.300, 411.549) |
A |
SSW |
140 |
20 |
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0.5 |
1 |
547.000 (535.854, 558.500) |
228.950 (221.851, 236.344) |
828.350 (812.053, 843.600) |
348.900 (339.653, 357.947) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
933.400 (919.501, 948.742) |
390.100 (381.054, 399.450) |
1435.650 (1419.158, 1452.700) |
600.400 (588.903, 611.639) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
81.950 (79.501, 84.299) |
33.750 (31.650, 35.500) |
124.850 (119.903, 129.400) |
53.350 (48.300, 58.300) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
88.950 (86.200, 92.000) |
39.400 (37.301, 41.650) |
145.950 (140.501, 151.450) |
62.800 (59.251, 66.600) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
256.500 (245.300, 268.597) |
110.100 (102.000, 119.095) |
388.700 (371.303, 405.500) |
159.700 (149.000, 171.400) |
A |
BGS-SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
1 |
317.900 (309.000, 327.800) |
138.100 (131.000, 145.495) |
498.100 (485.400, 512.595) |
217.300 (206.703, 227.995) |
A |
SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
1 |
444.300 (433.003, 458.000) |
197.400 (189.500, 205.997) |
701.900 (693.703, 709.997) |
294.200 (283.413, 302.997) |
A |
BGS-SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
1 |
632.600 (618.800, 646.700) |
275.500 (265.303, 284.100) |
1000.700 (987.200, 1014.197) |
413.200 (400.203, 426.197) |
A |
SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
1 |
593.300 (574.805, 611.697) |
248.100 (231.410, 262.797) |
926.700 (916.203, 937.092) |
388.800 (377.500, 400.797) |
A |
BGS-SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1 |
1 |
929.600 (913.900, 944.997) |
393.400 (386.600, 400.100) |
1463.200 (1444.705, 1484.597) |
609.200 (596.700, 622.297) |
A |
SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
261.800 (245.603, 274.300) |
114.100 (106.500, 121.297) |
411.300 (398.403, 422.097) |
172.600 (164.903, 179.697) |
A |
BGS-SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
324.500 (314.900, 333.000) |
137.300 (131.300, 143.000) |
491.900 (478.203, 502.597) |
205.900 (196.600, 213.000) |
A |
SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
466.300 (452.403, 482.197) |
194.800 (184.900, 205.992) |
733.400 (716.105, 748.097) |
310.100 (300.600, 321.897) |
A |
BGS-SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
643.300 (634.600, 653.800) |
267.700 (259.205, 275.600) |
993.800 (978.105, 1009.600) |
422.000 (409.005, 433.100) |
A |
SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
616.100 (600.800, 630.595) |
255.800 (246.405, 264.597) |
959.300 (941.508, 976.500) |
415.600 (410.103, 421.500) |
A |
BGS-SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1.5 |
1 |
946.000 (930.813, 961.897) |
388.400 (377.503, 399.600) |
1466.100 (1442.003, 1488.695) |
611.900 (599.603, 625.692) |
A |
SSW |
210 |
10 |
|
|
|
|
|
|
|
|
2 |
1 |
263.200 (255.750, 271.349) |
111.250 (107.200, 115.499) |
414.950 (407.301, 423.250) |
174.350 (168.454, 180.449) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
314.400 (306.500, 322.099) |
131.750 (127.251, 136.049) |
500.350 (493.601, 508.099) |
212.650 (207.701, 218.099) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
462.500 (451.751, 472.850) |
198.200 (191.901, 204.595) |
731.700 (716.750, 744.946) |
308.050 (300.653, 315.699) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
628.850 (618.160, 638.250) |
263.450 (257.401, 270.100) |
985.400 (971.001, 997.646) |
412.800 (405.854, 419.844) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
622.400 (612.503, 632.000) |
267.700 (262.451, 273.297) |
970.800 (955.103, 985.649) |
409.750 (402.900, 417.050) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
957.450 (942.920, 970.900) |
396.200 (387.100, 405.750) |
1493.200 (1476.963, 1508.446) |
625.600 (614.700, 635.699) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
264.900 (256.600, 274.347) |
111.900 (107.100, 117.149) |
409.300 (402.650, 416.549) |
171.100 (165.801, 176.200) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
321.300 (312.200, 331.092) |
132.400 (127.900, 137.499) |
505.450 (496.003, 514.749) |
212.950 (207.450, 218.397) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
473.250 (463.854, 482.350) |
199.200 (192.451, 206.399) |
734.450 (724.601, 744.149) |
301.400 (294.004, 308.947) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
644.950 (633.704, 655.197) |
275.350 (269.150, 281.349) |
998.800 (986.951, 1011.644) |
417.500 (409.250, 426.499) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
635.350 (624.653, 644.647) |
264.650 (258.501, 270.899) |
994.450 (981.751, 1007.297) |
422.050 (414.203, 429.695) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
951.000 (938.706, 961.799) |
403.950 (395.753, 412.049) |
1473.700 (1462.251, 1485.946) |
617.100 (607.501, 627.797) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection on favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
1 |
282.500 (275.750, 289.350) |
118.950 (114.800, 123.300) |
443.250 (434.651, 451.596) |
187.200 (182.750, 191.199) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
336.700 (329.400, 343.749) |
142.950 (137.901, 148.099) |
534.100 (525.451, 543.747) |
227.150 (221.001, 233.049) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
507.500 (497.503, 518.197) |
211.300 (207.350, 215.895) |
788.750 (778.004, 799.200) |
330.450 (324.450, 336.897) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
686.450 (674.101, 698.799) |
291.550 (284.353, 298.947) |
1053.450 (1042.654, 1064.050) |
449.650 (442.800, 456.900) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
698.250 (689.304, 706.300) |
293.550 (286.405, 300.499) |
1073.150 (1060.658, 1086.499) |
453.050 (442.206, 463.199) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
1004.950 (991.600, 1022.097) |
424.150 (416.400, 431.500) |
1595.250 (1577.850, 1613.999) |
676.150 (664.650, 686.892) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
303.100 (295.000, 311.150) |
127.700 (122.451, 132.797) |
480.200 (470.400, 489.442) |
202.000 (197.301, 206.399) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
350.400 (343.551, 356.450) |
148.750 (145.451, 152.199) |
542.500 (530.801, 553.700) |
231.750 (224.153, 240.049) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
571.350 (564.503, 579.897) |
241.750 (236.401, 247.650) |
868.850 (855.050, 883.297) |
363.750 (354.950, 373.297) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
706.800 (694.001, 718.647) |
293.700 (286.353, 300.500) |
1101.200 (1082.253, 1120.395) |
465.950 (455.153, 476.600) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
773.950 (764.851, 783.999) |
330.950 (323.950, 338.196) |
1200.950 (1187.900, 1214.650) |
507.350 (499.550, 514.749) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
1063.300 (1045.000, 1080.645) |
447.700 (439.800, 455.899) |
1633.550 (1616.351, 1649.749) |
688.250 (676.250, 699.349) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
313.850 (306.006, 320.795) |
135.000 (131.200, 138.850) |
473.150 (462.654, 483.596) |
202.050 (196.403, 207.250) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
355.800 (345.851, 365.147) |
149.400 (144.500, 154.399) |
551.400 (542.301, 560.245) |
231.950 (225.650, 238.399) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
562.150 (551.050, 573.449) |
234.100 (227.254, 240.499) |
876.300 (863.308, 889.797) |
368.050 (360.501, 374.697) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
701.050 (686.901, 715.749) |
295.750 (287.851, 303.849) |
1107.150 (1093.254, 1119.694) |
462.400 (455.505, 469.646) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
774.800 (759.053, 791.247) |
325.850 (315.801, 334.849) |
1200.650 (1186.900, 1213.495) |
508.400 (499.901, 515.650) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
1052.850 (1039.100, 1064.047) |
445.750 (435.850, 454.649) |
1622.950 (1607.751, 1638.445) |
677.100 (669.004, 684.999) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
312.700 (306.400, 318.999) |
130.400 (126.803, 133.699) |
502.150 (489.250, 515.342) |
212.750 (206.951, 218.149) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
361.150 (351.401, 371.100) |
149.550 (143.350, 156.150) |
556.400 (546.353, 565.750) |
233.250 (227.951, 238.099) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
568.000 (558.551, 578.591) |
241.900 (234.301, 249.199) |
899.800 (890.700, 909.095) |
381.900 (375.201, 388.246) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
717.100 (704.111, 731.836) |
304.300 (294.450, 314.847) |
1098.400 (1090.153, 1106.846) |
460.600 (453.851, 467.650) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
798.950 (786.250, 811.799) |
338.700 (330.551, 346.947) |
1242.600 (1230.751, 1255.597) |
520.900 (514.000, 527.950) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
1050.400 (1035.301, 1064.897) |
445.300 (436.300, 454.097) |
1660.850 (1639.964, 1679.600) |
700.150 (683.758, 715.996) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
319.000 (311.903, 325.400) |
135.300 (126.000, 144.795) |
502.500 (490.903, 513.400) |
211.500 (204.903, 217.500) |
X |
BGS-SSW |
70 |
10 |
|
|
|
|
|
|
|
|
2.5 |
1 |
361.300 (347.503, 376.297) |
151.200 (142.100, 160.300) |
571.200 (557.900, 584.600) |
238.000 (231.700, 244.000) |
X |
SSW |
70 |
10 |
|
|
|
|
|
|
|
|
2.5 |
1 |
577.400 (559.003, 596.397) |
247.500 (240.300, 254.300) |
893.100 (875.600, 909.895) |
377.700 (368.903, 386.000) |
X |
BGS-SSW |
140 |
10 |
|
|
|
|
|
|
|
|
2.5 |
1 |
718.100 (703.403, 731.000) |
301.700 (292.005, 312.797) |
1130.900 (1109.700, 1150.992) |
478.600 (464.900, 491.490) |
X |
SSW |
140 |
10 |
|
|
|
|
|
|
|
|
2.5 |
1 |
781.200 (761.900, 799.495) |
333.700 (321.103, 345.897) |
1235.400 (1217.808, 1258.195) |
511.600 (498.400, 524.395) |
X |
BGS-SSW |
210 |
10 |
|
|
|
|
|
|
|
|
2.5 |
1 |
1068.333 (1058.222, 1080.442) |
448.000 (434.561, 458.664) |
1638.556 (1603.020, 1672.442) |
682.889 (665.781, 701.778) |
X |
SSW |
210 |
9 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection |
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
1 |
371.100 (362.003, 379.746) |
157.500 (152.551, 161.650) |
571.000 (560.401, 581.296) |
239.150 (234.101, 244.900) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
441.850 (433.406, 450.500) |
188.250 (184.350, 192.700) |
696.500 (683.453, 711.447) |
298.800 (291.401, 305.997) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
670.900 (661.251, 679.997) |
284.050 (277.951, 290.199) |
1026.500 (1012.950, 1040.092) |
437.800 (430.251, 445.800) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
886.400 (874.650, 897.396) |
375.950 (366.553, 385.650) |
1359.950 (1340.951, 1377.491) |
573.750 (562.153, 585.350) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
909.100 (898.450, 922.097) |
383.100 (375.500, 391.200) |
1415.800 (1398.954, 1435.092) |
598.850 (588.450, 609.897) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
1306.850 (1291.154, 1322.399) |
554.600 (546.500, 562.246) |
2017.800 (1999.305, 2036.389) |
845.850 (832.154, 859.400) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
122.800 (119.250, 126.350) |
52.650 (49.850, 55.850) |
187.450 (182.200, 193.050) |
80.250 (77.101, 83.299) |
X |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
136.150 (131.403, 140.150) |
56.350 (53.701, 59.150) |
206.000 (200.050, 211.400) |
87.100 (83.001, 91.245) |
X |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
399.100 (388.903, 407.845) |
165.850 (158.753, 172.099) |
617.450 (608.851, 624.800) |
263.150 (258.800, 267.600) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
447.600 (439.604, 455.150) |
186.750 (180.258, 192.645) |
715.000 (704.253, 726.696) |
304.450 (295.553, 313.250) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
727.350 (714.751, 739.199) |
307.750 (300.651, 315.147) |
1110.000 (1095.503, 1123.447) |
471.100 (460.501, 480.047) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
911.200 (898.201, 923.650) |
384.200 (376.651, 390.999) |
1409.050 (1394.505, 1424.697) |
595.700 (585.106, 606.190) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
990.600 (974.501, 1005.347) |
424.150 (415.901, 432.699) |
1534.850 (1516.004, 1554.347) |
636.350 (624.701, 646.946) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
1357.600 (1347.850, 1367.149) |
581.250 (574.451, 586.800) |
2096.400 (2080.051, 2112.296) |
879.050 (870.201, 887.442) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
402.150 (394.551, 409.599) |
173.200 (167.750, 178.399) |
630.450 (621.201, 639.947) |
267.400 (260.950, 273.749) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
458.450 (448.551, 469.841) |
198.550 (190.601, 205.449) |
734.300 (721.709, 748.247) |
314.250 (304.305, 322.850) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
415.550 (406.705, 424.599) |
174.200 (168.200, 180.099) |
646.150 (636.651, 655.200) |
273.450 (267.201, 280.447) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
464.150 (454.054, 476.249) |
196.600 (189.701, 202.849) |
732.850 (718.605, 745.950) |
308.350 (300.204, 316.996) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
417.850 (410.103, 426.250) |
175.950 (171.753, 180.200) |
656.100 (647.754, 664.247) |
278.300 (271.851, 284.649) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
468.400 (459.451, 478.350) |
199.300 (194.601, 204.246) |
723.500 (712.653, 734.545) |
307.400 (301.901, 313.750) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
No
gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Autosome |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
0 |
228.300 (222.601, 234.299) |
95.250 (92.250, 98.700) |
357.900 (350.301, 365.049) |
146.750 (142.753, 151.100) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
311.350 (304.601, 317.849) |
131.000 (125.803, 136.847) |
474.800 (465.004, 484.249) |
197.650 (190.754, 203.900) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
396.850 (389.500, 404.799) |
168.450 (162.951, 173.650) |
599.050 (587.853, 610.050) |
253.250 (245.950, 260.499) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
615.550 (608.650, 622.746) |
257.400 (252.651, 261.950) |
946.600 (930.213, 961.999) |
396.900 (387.200, 407.645) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
526.300 (515.750, 535.549) |
218.350 (212.051, 224.499) |
814.350 (799.651, 826.549) |
346.250 (334.701, 356.199) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
906.650 (890.853, 922.695) |
383.900 (374.550, 392.099) |
1419.750 (1403.610, 1434.300) |
596.500 (589.405, 604.500) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
251.800 (241.603, 261.097) |
106.900 (100.503, 113.597) |
379.600 (366.203, 391.897) |
157.400 (151.700, 163.097) |
A |
BGS-SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
323.000 (305.210, 336.897) |
137.000 (131.400, 142.200) |
505.100 (485.203, 524.097) |
210.300 (196.303, 223.997) |
A |
SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
445.200 (432.900, 455.790) |
188.600 (183.800, 193.400) |
687.200 (677.605, 697.295) |
285.000 (273.603, 295.795) |
A |
BGS-SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
634.100 (620.308, 648.697) |
270.900 (259.600, 281.997) |
968.000 (952.303, 980.300) |
403.400 (389.100, 415.995) |
A |
SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
595.300 (583.903, 607.600) |
246.900 (239.500, 255.000) |
922.900 (906.005, 934.700) |
383.900 (375.900, 391.197) |
A |
BGS-SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
941.700 (916.115, 967.097) |
394.100 (379.000, 406.297) |
1448.300 (1423.408, 1469.600) |
601.200 (582.703, 618.800) |
A |
SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1.5 |
0 |
265.750 (256.703, 274.800) |
115.000 (109.700, 120.549) |
401.950 (392.813, 409.699) |
165.850 (158.851, 172.699) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
316.850 (311.050, 323.047) |
133.150 (128.600, 137.399) |
490.650 (482.501, 497.399) |
204.100 (198.601, 209.397) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
475.250 (465.706, 484.549) |
201.050 (195.700, 206.300) |
720.300 (707.603, 733.245) |
299.100 (291.501, 307.200) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
631.450 (622.001, 640.499) |
267.650 (259.303, 275.500) |
986.050 (973.301, 997.597) |
413.150 (406.050, 421.099) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
617.450 (603.401, 631.150) |
260.050 (252.455, 267.299) |
953.400 (940.205, 967.299) |
399.500 (390.600, 408.949) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
951.200 (939.503, 962.544) |
400.850 (393.451, 408.999) |
1478.000 (1464.901, 1494.196) |
623.450 (613.908, 632.549) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
264.100 (257.701, 270.649) |
111.500 (108.000, 115.199) |
418.550 (408.300, 428.097) |
175.800 (169.550, 182.100) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
323.050 (315.401, 330.899) |
134.900 (130.101, 140.446) |
496.550 (486.951, 505.900) |
207.700 (200.700, 213.999) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
465.400 (453.551, 477.947) |
195.550 (188.500, 203.049) |
724.150 (712.755, 735.600) |
306.650 (299.056, 314.599) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
639.550 (629.153, 651.046) |
266.750 (258.901, 274.999) |
988.700 (977.053, 1000.896) |
415.500 (406.751, 424.300) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
642.200 (630.104, 653.549) |
270.650 (263.751, 277.650) |
984.200 (971.655, 996.246) |
413.800 (408.800, 419.150) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
964.550 (950.901, 979.194) |
406.900 (398.701, 415.200) |
1483.300 (1464.450, 1501.600) |
618.100 (605.100, 631.497) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
271.350 (262.850, 279.747) |
115.100 (110.601, 119.400) |
424.600 (417.551, 431.399) |
181.150 (174.850, 187.695) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
316.200 (309.550, 323.449) |
131.700 (128.800, 135.247) |
495.800 (487.251, 505.039) |
208.950 (203.201, 213.900) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
479.500 (473.550, 484.949) |
201.900 (198.101, 205.699) |
755.850 (744.851, 765.749) |
312.350 (305.501, 319.299) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
633.250 (621.250, 645.546) |
266.350 (257.754, 274.647) |
1003.650 (988.901, 1019.749) |
428.200 (419.553, 436.349) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
632.800 (622.750, 644.145) |
272.000 (264.351, 279.897) |
999.150 (987.300, 1011.996) |
416.900 (408.000, 425.499) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
959.400 (947.101, 971.246) |
398.450 (391.251, 406.049) |
1477.950 (1460.700, 1493.945) |
617.750 (610.501, 624.795) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection on favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
0 |
285.200 (277.551, 293.599) |
121.350 (117.400, 125.149) |
423.100 (416.201, 430.100) |
179.450 (175.150, 183.499) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
348.900 (340.805, 357.500) |
149.050 (141.750, 156.349) |
529.050 (517.000, 541.399) |
225.400 (216.851, 232.900) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
504.650 (494.700, 514.750) |
212.000 (206.850, 216.549) |
773.350 (760.100, 785.596) |
321.250 (315.801, 326.949) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
661.050 (651.956, 669.445) |
281.550 (272.801, 288.400) |
1047.450 (1033.956, 1061.246) |
440.250 (431.553, 447.999) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
688.300 (678.655, 698.945) |
291.600 (282.204, 300.649) |
1061.950 (1047.201, 1076.044) |
448.350 (440.150, 456.050) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
1004.500 (987.405, 1021.697) |
420.100 (410.104, 430.947) |
1549.500 (1529.953, 1567.197) |
651.950 (641.851, 661.249) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
305.500 (297.300, 311.800) |
127.600 (123.003, 132.700) |
462.200 (453.503, 469.400) |
191.800 (185.803, 197.300) |
X |
BGS-SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
355.000 (345.800, 365.100) |
147.600 (140.703, 154.597) |
546.600 (536.900, 558.100) |
229.000 (220.803, 238.097) |
X |
SSW |
70 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
551.600 (541.900, 560.995) |
236.600 (232.203, 240.400) |
847.200 (825.700, 868.500) |
356.500 (342.200, 369.300) |
X |
BGS-SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
700.200 (686.903, 715.090) |
293.900 (286.500, 304.200) |
1105.500 (1094.200, 1117.497) |
465.700 (457.700, 473.900) |
X |
SSW |
140 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
754.500 (732.900, 770.997) |
318.700 (309.305, 326.297) |
1175.200 (1155.205, 1191.587) |
488.000 (477.103, 498.197) |
X |
BGS-SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1 |
0 |
1032.000 (1016.400, 1048.495) |
440.900 (428.803, 452.497) |
1626.000 (1601.403, 1647.897) |
686.700 (674.600, 697.900) |
X |
SSW |
210 |
10 |
|
|
|
|
|
|
|
|
1.5 |
0 |
299.200 (293.001, 305.700) |
127.600 (122.001, 132.949) |
493.700 (482.751, 505.297) |
208.650 (203.400, 214.700) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
352.850 (344.850, 360.999) |
150.100 (143.100, 156.646) |
555.500 (542.950, 565.949) |
236.800 (229.301, 243.499) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
559.800 (545.903, 572.899) |
237.650 (230.250, 245.896) |
879.100 (869.451, 888.949) |
372.700 (366.800, 378.400) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
702.750 (693.855, 712.447) |
295.500 (288.801, 302.100) |
1080.150 (1063.801, 1097.700) |
452.150 (442.450, 461.299) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
784.550 (775.500, 793.997) |
331.200 (324.603, 337.900) |
1185.600 (1164.500, 1205.091) |
496.700 (482.308, 510.394) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
1049.650 (1040.150, 1060.640) |
448.800 (440.651, 456.145) |
1633.900 (1617.305, 1647.949) |
690.150 (678.958, 701.496) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
315.050 (307.451, 322.550) |
130.550 (126.100, 134.900) |
485.400 (474.151, 497.450) |
203.500 (198.801, 207.900) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
351.800 (341.353, 363.250) |
147.850 (141.000, 154.799) |
555.900 (549.101, 563.200) |
234.000 (228.601, 238.949) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
569.550 (558.500, 581.949) |
243.450 (237.050, 249.599) |
903.150 (890.754, 916.149) |
381.100 (373.150, 389.050) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
704.850 (693.354, 716.197) |
297.800 (289.501, 306.895) |
1101.600 (1089.505, 1113.747) |
461.750 (451.754, 472.192) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
771.800 (762.901, 780.599) |
323.100 (317.600, 329.099) |
1229.850 (1214.153, 1244.349) |
518.950 (509.201, 529.299) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
1057.550 (1044.156, 1071.699) |
448.150 (442.501, 455.144) |
1625.000 (1603.764, 1646.049) |
689.150 (673.608, 703.045) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
318.100 (311.201, 325.349) |
131.750 (127.150, 136.599) |
488.950 (475.503, 499.899) |
209.450 (201.000, 218.346) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
358.650 (351.003, 365.999) |
151.100 (144.000, 158.549) |
552.150 (543.800, 559.897) |
236.700 (231.004, 242.649) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
574.950 (565.755, 584.746) |
248.550 (241.500, 255.445) |
895.650 (879.005, 911.741) |
376.050 (366.551, 383.797) |
X |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
719.150 (705.111, 732.341) |
305.300 (297.501, 313.300) |
1118.750 (1105.751, 1130.799) |
475.850 (469.801, 482.199) |
X |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
787.950 (777.301, 799.945) |
336.450 (329.051, 344.750) |
1233.550 (1223.100, 1245.436) |
516.200 (505.703, 526.150) |
X |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
1056.800 (1042.061, 1071.797) |
449.100 (442.251, 456.249) |
1654.700 (1640.404, 1668.800) |
688.650 (678.804, 698.147) |
X |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection on favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
0 |
370.550 (361.600, 379.650) |
157.700 (150.451, 164.750) |
565.900 (555.155, 575.699) |
239.950 (231.101, 249.397) |
X |
BGS-SSW |
70 |
|
|
|
|
|
|
|
|
|
0.5 |
0 |
445.850 (436.900, 454.049) |
187.600 (181.901, 193.146) |
685.400 (676.854, 693.949) |
290.750 (283.503, 297.399) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
386.500 (379.651, 393.399) |
165.350 (160.150, 170.200) |
612.300 (601.651, 623.200) |
258.700 (252.451, 265.149) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
457.300 (446.501, 466.950) |
193.250 (186.600, 200.600) |
706.300 (696.700, 716.347) |
299.100 (292.600, 306.250) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
402.750 (397.055, 408.450) |
175.050 (170.201, 180.297) |
633.450 (624.750, 644.347) |
265.750 (260.500, 270.999) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
459.150 (450.703, 468.699) |
191.450 (185.003, 197.896) |
726.500 (714.253, 738.000) |
305.850 (298.804, 313.449) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
411.300 (401.251, 421.050) |
178.750 (173.659, 183.896) |
646.000 (634.254, 656.349) |
271.650 (265.603, 277.550) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
474.250 (464.158, 483.850) |
201.400 (193.600, 209.444) |
726.650 (716.700, 737.446) |
312.800 (306.603, 320.049) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
409.400 (402.051, 417.899) |
171.750 (167.501, 176.249) |
648.850 (637.250, 659.642) |
278.200 (271.551, 285.449) |
X |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
469.300 (464.601, 474.549) |
197.350 (191.900, 202.649) |
714.800 (705.903, 723.947) |
304.450 (298.101, 310.949) |
X |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
No
crossing over with gene conversion. Xw is weak selection on X-linked
favorable mutations; Xs is strong selection |
|
|
|
|
|
|
|
|
|
|
|
|
0 |
1 |
53.050 (50.301, 55.900) |
22.600 (20.750, 24.550) |
73.800 (70.550, 77.200) |
31.450 (29.400, 33.800) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
202.500 (197.550, 206.849) |
85.900 (82.500, 89.200) |
267.700 (263.350, 271.500) |
110.350 (106.951, 113.449) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
33.550 (31.751, 35.500) |
14.000 (12.850, 15.050) |
43.700 (41.350, 46.000) |
18.150 (16.701, 19.550) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
302.050 (296.751, 307.100) |
126.450 (123.054, 130.099) |
392.350 (385.101, 400.350) |
162.000 (157.401, 166.550) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
25.250 (23.051, 27.300) |
11.150 (10.000, 12.350) |
37.650 (35.501, 39.750) |
15.150 (13.501, 16.650) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
373.650 (365.601, 381.897) |
157.950 (153.251, 162.650) |
481.250 (473.453, 488.200) |
198.500 (193.900, 202.847) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
106.550 (102.853, 110.550) |
43.150 (40.250, 46.100) |
143.900 (140.000, 147.497) |
60.500 (57.800, 62.949) |
Xw |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
222.050 (217.751, 226.549) |
93.550 (90.601, 96.749) |
307.850 (303.450, 312.599) |
127.850 (125.001, 130.500) |
Xw |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
88.850 (83.751, 93.299) |
37.650 (35.050, 40.147) |
115.400 (111.401, 119.100) |
49.400 (47.050, 51.800) |
Xw |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
343.650 (337.251, 350.297) |
145.950 (142.801, 149.150) |
440.800 (432.855, 449.549) |
183.650 (179.300, 188.100) |
Xw |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
65.450 (61.653, 69.249) |
28.600 (26.401, 30.899) |
84.550 (79.851, 89.347) |
34.000 (31.250, 36.900) |
Xw |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
422.400 (417.300, 427.900) |
178.300 (174.401, 182.650) |
531.500 (524.801, 539.249) |
220.050 (214.900, 224.597) |
Xw |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
155.500 (149.605, 161.350) |
66.200 (63.550, 69.199) |
206.100 (201.750, 210.799) |
86.900 (83.101, 90.550) |
Xs |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
280.450 (274.451, 287.250) |
120.750 (115.400, 126.300) |
379.400 (372.951, 386.149) |
156.100 (151.600, 160.749) |
Xs |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
143.800 (139.351, 148.249) |
59.900 (58.450, 61.600) |
182.650 (176.500, 188.597) |
75.800 (72.103, 79.450) |
Xs |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
408.750 (401.451, 415.749) |
172.100 (167.001, 176.999) |
537.550 (529.300, 547.000) |
226.200 (220.351, 232.450) |
Xs |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
113.100 (109.400, 116.600) |
46.900 (44.951, 48.850) |
144.300 (139.503, 149.399) |
61.600 (58.150, 64.749) |
Xs |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
1 |
521.650 (514.101, 529.099) |
223.000 (219.750, 226.000) |
633.950 (624.305, 643.349) |
265.250 (260.700, 270.099) |
Xs |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
No
crossing over or gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0 |
0 |
19.600 (17.551, 21.200) |
8.400 (7.350, 9.250) |
27.950 (25.650, 30.400) |
11.150 (9.650, 12.650) |
A |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
87.800 (84.951, 90.600) |
37.500 (35.701, 39.450) |
103.500 (100.451, 106.600) |
42.500 (40.400, 44.750) |
A |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
17.250 (15.650, 18.700) |
6.850 (5.900, 7.850) |
24.050 (22.050, 26.099) |
10.050 (8.650, 11.300) |
A |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
123.150 (120.051, 126.150) |
51.750 (50.050, 53.450) |
145.650 (141.700, 149.500) |
60.900 (58.450, 63.400) |
A |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
15.300 (13.900, 16.799) |
6.500 (5.700, 7.300) |
24.600 (21.900, 26.800) |
10.050 (8.900, 11.200) |
A |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
150.150 (145.500, 155.449) |
61.900 (58.800, 64.947) |
182.650 (178.900, 186.597) |
77.400 (74.750, 80.199) |
A |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
45.700 (42.950, 48.650) |
19.600 (17.400, 21.697) |
63.300 (59.101, 67.349) |
26.000 (23.551, 28.499) |
Xw |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
108.400 (105.000, 111.650) |
46.200 (44.250, 48.250) |
122.200 (118.501, 126.099) |
52.050 (49.951, 54.450) |
Xw |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
35.850 (33.851, 37.799) |
16.600 (14.750, 18.300) |
49.850 (47.200, 52.500) |
20.550 (18.800, 22.299) |
Xw |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
149.700 (145.600, 154.000) |
64.300 (60.400, 67.849) |
169.300 (164.650, 173.649) |
70.450 (66.753, 73.950) |
Xw |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
32.900 (30.450, 34.900) |
13.800 (12.150, 15.400) |
44.800 (42.200, 47.350) |
20.050 (18.401, 21.750) |
Xw |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
181.300 (175.901, 187.150) |
75.900 (73.551, 78.000) |
201.350 (196.350, 206.350) |
85.600 (82.701, 88.350) |
Xw |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
72.400 (69.251, 75.600) |
29.600 (27.650, 31.450) |
88.800 (85.301, 92.150) |
38.100 (35.000, 41.399) |
Xs |
BGS-SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
139.450 (134.753, 144.000) |
62.000 (59.450, 64.449) |
151.700 (147.551, 155.650) |
61.850 (59.251, 64.550) |
Xs |
SSW |
70 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
60.800 (56.401, 64.700) |
26.650 (24.350, 28.950) |
79.000 (75.801, 82.400) |
34.300 (32.100, 36.550) |
Xs |
BGS-SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
188.600 (184.700, 193.597) |
80.750 (77.150, 84.400) |
208.400 (204.800, 212.350) |
87.350 (83.403, 91.300) |
Xs |
SSW |
140 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
49.900 (47.051, 52.850) |
23.150 (21.001, 25.300) |
66.750 (63.604, 70.000) |
28.350 (26.351, 30.699) |
Xs |
BGS-SSW |
210 |
20 |
|
|
|
|
|
|
|
|
0 |
0 |
224.200 (219.950, 228.650) |
93.850 (90.453, 97.200) |
250.250 (247.101, 253.697) |
106.750 (103.850, 109.850) |
Xs |
SSW |
210 |
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
20 genes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
0.5 |
1 |
76.100 (71.551, 80.250) |
32.650 (30.450, 34.550) |
116.250 (112.051, 120.950) |
49.200 (46.751, 51.550) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
87.350 (83.553, 90.900) |
36.550 (33.600, 39.047) |
138.950 (134.850, 143.249) |
56.950 (54.001, 60.000) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
81.950 (79.450, 84.399) |
33.750 (31.701, 35.600) |
124.850 (120.251, 129.500) |
53.350 (48.601, 57.999) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
88.950 (86.051, 91.849) |
39.400 (37.100, 41.700) |
145.950 (140.750, 151.896) |
62.800 (59.350, 66.699) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
85.650 (81.450, 89.349) |
37.650 (35.451, 39.749) |
127.250 (122.601, 131.697) |
53.500 (50.250, 56.700) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
92.300 (88.701, 95.750) |
38.800 (36.500, 41.350) |
140.750 (134.801, 146.749) |
58.850 (55.301, 62.650) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
84.100 (80.151, 88.347) |
35.950 (33.151, 38.450) |
132.050 (127.403, 136.749) |
54.700 (51.400, 57.900) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
90.450 (85.601, 94.699) |
38.500 (35.950, 41.149) |
141.150 (137.001, 145.600) |
58.500 (55.800, 61.100) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
83.700 (80.101, 87.400) |
35.750 (33.400, 38.299) |
139.000 (133.650, 144.900) |
56.800 (53.850, 59.600) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
94.450 (90.500, 98.949) |
38.300 (35.751, 41.099) |
142.750 (137.500, 148.897) |
61.850 (58.400, 65.950) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
89.500 (86.401, 92.500) |
36.200 (34.450, 38.150) |
138.850 (135.801, 141.700) |
59.050 (56.251, 61.700) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
103.750 (98.951, 107.950) |
46.000 (43.050, 49.049) |
154.100 (150.050, 158.050) |
63.850 (60.601, 67.700) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
94.150 (90.300, 98.446) |
40.350 (37.650, 42.849) |
148.650 (143.950, 153.450) |
63.900 (61.300, 66.650) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
100.650 (96.600, 104.899) |
41.750 (38.401, 44.647) |
153.300 (146.101, 160.049) |
65.850 (61.700, 70.200) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
91.600 (87.750, 95.550) |
39.300 (36.650, 41.750) |
148.800 (144.100, 153.697) |
63.750 (60.400, 66.650) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
98.100 (93.100, 102.850) |
40.900 (38.450, 43.099) |
157.500 (151.753, 163.097) |
66.650 (63.501, 69.749) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
98.800 (93.300, 104.350) |
42.150 (39.101, 45.499) |
155.250 (150.700, 159.599) |
66.200 (62.900, 69.200) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
103.150 (100.101, 106.100) |
41.950 (39.650, 43.950) |
156.500 (149.500, 162.950) |
65.050 (60.750, 69.449) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
97.200 (93.350, 101.300) |
40.950 (38.050, 43.899) |
156.050 (150.603, 161.399) |
67.150 (63.100, 71.697) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
100.300 (95.500, 104.550) |
43.700 (41.350, 45.750) |
163.950 (158.300, 168.949) |
68.300 (63.850, 72.050) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
115.300 (109.451, 120.647) |
48.400 (44.751, 52.297) |
184.700 (179.751, 189.099) |
78.550 (75.650, 81.450) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
1 |
130.300 (124.750, 135.799) |
55.600 (53.000, 57.900) |
202.700 (196.551, 208.549) |
87.150 (83.600, 90.849) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
122.800 (118.951, 126.500) |
52.650 (49.551, 55.550) |
187.450 (181.701, 193.149) |
80.250 (77.250, 83.000) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
1 |
136.150 (131.201, 139.949) |
56.350 (53.600, 59.099) |
206.000 (199.601, 211.649) |
87.100 (83.154, 91.749) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
126.150 (121.451, 130.249) |
53.050 (50.700, 55.599) |
191.500 (187.350, 195.799) |
79.150 (76.150, 81.999) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
1 |
133.300 (127.153, 138.849) |
55.900 (53.050, 59.097) |
204.750 (197.550, 211.846) |
86.850 (81.703, 91.547) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
125.450 (121.250, 130.300) |
52.050 (49.051, 55.300) |
196.800 (190.853, 202.800) |
83.600 (79.350, 87.599) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
1 |
131.150 (125.501, 136.750) |
56.150 (52.504, 59.499) |
216.100 (210.003, 222.300) |
91.600 (87.900, 95.299) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
127.550 (123.601, 131.450) |
56.350 (52.500, 59.800) |
202.850 (198.400, 207.350) |
84.150 (80.751, 87.149) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
1 |
136.950 (131.701, 141.649) |
58.500 (54.751, 62.149) |
208.450 (203.000, 213.600) |
89.000 (85.500, 92.650) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
73.950 (71.051, 77.000) |
31.550 (29.600, 33.750) |
117.050 (113.950, 120.450) |
48.800 (46.301, 51.349) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
87.600 (83.100, 91.349) |
35.900 (33.503, 38.200) |
136.300 (130.700, 141.646) |
56.650 (52.900, 60.399) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
82.200 (79.500, 84.850) |
33.150 (30.851, 34.899) |
122.500 (117.301, 127.600) |
52.600 (49.100, 56.300) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
90.450 (86.650, 94.400) |
37.550 (34.850, 40.500) |
138.900 (133.801, 144.799) |
56.750 (53.950, 59.649) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
83.300 (78.504, 88.000) |
33.850 (30.851, 37.050) |
127.200 (122.600, 131.699) |
54.250 (51.101, 57.300) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
90.400 (84.750, 95.447) |
39.000 (36.051, 41.549) |
141.150 (135.700, 146.849) |
59.550 (56.401, 63.050) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
87.150 (82.950, 91.000) |
34.900 (32.153, 37.600) |
128.850 (124.650, 132.850) |
52.550 (49.700, 55.400) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
90.100 (85.951, 94.150) |
38.100 (34.853, 41.549) |
144.900 (140.250, 148.800) |
61.750 (58.750, 65.497) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
85.100 (81.050, 89.449) |
37.450 (35.200, 39.750) |
132.600 (128.150, 137.447) |
55.200 (53.050, 57.350) |
A |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
92.450 (89.100, 96.050) |
39.650 (37.300, 41.950) |
147.850 (142.250, 153.700) |
62.200 (58.800, 65.850) |
A |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
89.900 (84.901, 94.499) |
36.650 (33.950, 39.349) |
139.500 (134.800, 144.399) |
59.450 (57.100, 62.000) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
96.750 (92.350, 100.649) |
40.600 (37.400, 43.800) |
157.550 (151.650, 163.350) |
66.600 (64.251, 68.800) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
92.000 (88.850, 95.199) |
39.750 (37.200, 42.000) |
146.650 (141.851, 151.700) |
62.800 (58.701, 66.399) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
102.200 (98.001, 106.600) |
43.200 (41.450, 44.750) |
155.650 (152.651, 158.899) |
64.750 (62.001, 67.299) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
95.150 (91.300, 98.949) |
41.300 (39.401, 43.299) |
147.750 (141.804, 153.697) |
62.700 (59.153, 66.250) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
102.650 (97.750, 107.100) |
43.350 (40.501, 46.000) |
154.700 (149.951, 159.300) |
67.150 (64.101, 70.100) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
95.200 (91.550, 98.550) |
39.650 (36.851, 42.350) |
151.050 (147.001, 155.100) |
62.850 (59.050, 66.799) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
104.650 (100.100, 108.900) |
43.950 (41.101, 46.699) |
155.100 (150.701, 159.400) |
64.250 (61.100, 67.549) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
96.950 (91.601, 102.050) |
41.850 (39.150, 44.699) |
152.600 (146.601, 157.547) |
64.600 (61.650, 67.550) |
Xw |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
103.550 (96.800, 110.300) |
44.400 (40.251, 48.649) |
162.250 (154.501, 169.200) |
66.600 (63.151, 69.899) |
Xw |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
117.800 (112.950, 122.549) |
48.850 (45.701, 52.199) |
182.100 (175.903, 188.350) |
75.950 (72.001, 79.900) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
0.5 |
0 |
127.200 (121.150, 133.149) |
55.600 (51.851, 59.400) |
200.750 (196.203, 205.400) |
84.650 (80.453, 88.449) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
123.800 (118.401, 129.047) |
51.600 (48.250, 55.049) |
190.800 (185.401, 195.500) |
81.350 (78.351, 84.600) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1 |
0 |
134.900 (130.201, 139.050) |
57.700 (55.400, 59.849) |
205.100 (198.205, 211.949) |
86.500 (80.653, 91.600) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
124.100 (119.000, 128.900) |
53.000 (49.550, 56.700) |
196.800 (192.100, 201.600) |
85.250 (81.650, 89.099) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
1.5 |
0 |
132.600 (128.050, 136.899) |
55.300 (52.603, 57.650) |
208.900 (202.751, 215.549) |
89.000 (84.200, 93.750) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
126.900 (122.501, 131.050) |
51.550 (49.301, 53.400) |
195.000 (188.751, 201.099) |
84.250 (80.401, 88.299) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2 |
0 |
134.700 (130.303, 138.849) |
57.250 (54.901, 59.699) |
208.100 (202.700, 213.149) |
90.200 (86.450, 94.099) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
128.500 (124.551, 132.547) |
55.600 (51.703, 59.349) |
199.500 (194.700, 204.250) |
83.950 (80.701, 87.350) |
Xs |
BGS-SSW |
20 |
20 |
|
|
|
|
|
|
|
|
2.5 |
0 |
135.100 (128.604, 141.049) |
56.650 (53.701, 59.550) |
208.250 (202.551, 213.799) |
87.500 (84.550, 90.200) |
Xs |
SSW |
20 |
20 |
|
|
|
|
|
|
|
|
PK< PK
|X j j
Campos-Chwth-FileS2.htmUT øføf
Simulation |
Results: |
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Diversity
Statistics |
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Model |
Number |
Chr. |
Relative |
Relative |
Mean number of |
Mean number of |
Synonymous |
Proportion of |
Syn. site Tajima D |
UTR site |
Proportion of UTR |
UTR site Tajima D |
Intron site |
Proportion of intron |
Intron site Tajima D |
Nonsynonymous site |
Proportion of NS site |
NS site Tajima D |
|
|
|
|
|
|
|
|
|
of genes |
|
crossover |
gene conv. |
segregating NS |
segregating UTR |
site diversity |
syn. site singletons |
per gene |
diversity |
site singletons |
per gene |
diversity |
site singletons |
per gene |
diversity |
singletons |
per gene |
|
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|
rate |
rate |
mutations |
mutations |
|
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Autosomes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
0.5 |
1 |
119.760 (117.015, 123.072) |
116.645 (112.534, 120.536) |
0.01242 (0.01221, 0.01261) |
0.319 (0.312, 0.327) |
-0.209 (-0.238, -0.178) |
0.00429 (0.00420, 0.00438) |
0.449 (0.438, 0.461) |
-0.831 (-0.875, -0.784) |
0.01301 (0.01290, 0.01312) |
0.305 (0.301, 0.309) |
-0.137 (-0.154, -0.118) |
0.00196 (0.00191, 0.00201) |
0.464 (0.455, 0.472) |
-0.881 (-0.929, -0.841) |
|
|
|
|
|
|
|
BGS |
70 |
A |
0.5 |
1 |
139.123 (135.689, 142.702) |
147.395 (143.113, 151.540) |
0.01565 (0.01546, 0.01583) |
0.288 (0.282, 0.293) |
-0.046 (-0.076, -0.014) |
0.00531 (0.00519, 0.00543) |
0.406 (0.397, 0.416) |
-0.618 (-0.661, -0.578) |
0.01572 (0.01562, 0.01582) |
0.282 (0.279, 0.286) |
-0.003 (-0.022, 0.014) |
0.00229 (0.00223, 0.00234) |
0.429 (0.420, 0.438) |
-0.726 (-0.770, -0.684) |
|
|
|
|
|
|
|
SSW |
70 |
A |
0.5 |
1 |
- |
- |
0.01563 (0.01539, 0.01587) |
0.320 (0.315, 0.325) |
-0.245 (-0.268, -0.223) |
0.01416 (0.01396, 0.01436) |
0.340 (0.334, 0.346) |
-0.351 (-0.388, -0.317) |
0.01676 (0.01661, 0.01689) |
0.308 (0.305, 0.311) |
-0.163 (-0.180, -0.143) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
0.5 |
1 |
218.450 (213.958, 223.089) |
216.985 (212.995, 220.867) |
0.01106 (0.01094, 0.01118) |
0.313 (0.310, 0.317) |
-0.183 (-0.198, -0.168) |
0.00399 (0.00393, 0.00408) |
0.440 (0.434, 0.447) |
-0.786 (-0.813, -0.757) |
0.01154 (0.01145, 0.01163) |
0.302 (0.300, 0.304) |
-0.111 (-0.123, -0.099) |
0.00179 (0.00176, 0.00183) |
0.457 (0.450, 0.464) |
-0.853 (-0.884, -0.822) |
|
|
|
|
|
|
|
BGS |
140 |
A |
0.5 |
1 |
257.902 (252.128, 263.587) |
266.400 (261.004, 271.102) |
0.01357 (0.01343, 0.01372) |
0.295 (0.291, 0.300) |
-0.077 (-0.097, -0.055) |
0.00483 (0.00475, 0.00490) |
0.410 (0.402, 0.419) |
-0.640 (-0.674, -0.610) |
0.01369 (0.01359, 0.01377) |
0.285 (0.281, 0.288) |
-0.009 (-0.026, 0.006) |
0.00210 (0.00206, 0.00213) |
0.428 (0.422, 0.435) |
-0.711 (-0.741, -0.682) |
|
|
|
|
|
|
|
SSW |
140 |
A |
0.5 |
1 |
- |
- |
0.01558 (0.01541, 0.01575) |
0.316 (0.312, 0.319) |
-0.215 (-0.228, -0.202) |
0.01422 (0.01400, 0.01446) |
0.332 (0.327, 0.337) |
-0.318 (-0.345, -0.292) |
0.01666 (0.01647, 0.01685) |
0.304 (0.300, 0.307) |
-0.143 (-0.154, -0.131) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
0.5 |
1 |
309.570 (305.631, 313.477) |
307.827 (300.663, 313.727) |
0.01007 (0.00998, 0.01015) |
0.314 (0.309, 0.319) |
-0.179 (-0.202, -0.157) |
0.00374 (0.00367, 0.00381) |
0.434 (0.428, 0.441) |
-0.769 (-0.800, -0.739) |
0.01046 (0.01039, 0.01053) |
0.300 (0.298, 0.302) |
-0.101 (-0.114, -0.088) |
0.00168 (0.00167, 0.00170) |
0.453 (0.447, 0.459) |
-0.823 (-0.845, -0.800) |
|
|
|
|
|
|
|
BGS |
210 |
A |
0.5 |
1 |
349.267 (342.501, 355.404) |
361.465 (356.718, 366.849) |
0.01199 (0.01185, 0.01212) |
0.292 (0.289, 0.295) |
-0.051 (-0.064, -0.037) |
0.00438 (0.00432, 0.00444) |
0.409 (0.403, 0.415) |
-0.631 (-0.652, -0.613) |
0.01203 (0.01198, 0.01209) |
0.287 (0.284, 0.289) |
-0.016 (-0.029, -0.004) |
0.00189 (0.00186, 0.00192) |
0.435 (0.429, 0.441) |
-0.734 (-0.760, -0.709) |
|
|
|
|
|
|
|
SSW |
210 |
A |
0.5 |
1 |
- |
- |
0.01564 (0.01549, 0.01579) |
0.319 (0.316, 0.321) |
-0.226 (-0.239, -0.213) |
0.01416 (0.01401, 0.01431) |
0.336 (0.331, 0.341) |
-0.328 (-0.344, -0.310) |
0.01676 (0.01663, 0.01690) |
0.306 (0.304, 0.309) |
-0.148 (-0.162, -0.135) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
420 |
A |
0.5 |
1 |
488.467 (459.883, 520.883) |
528.017 (524.133, 533.183) |
0.00758 (0.00755, 0.00760) |
0.306 (0.300, 0.309) |
-0.130 (-0.146, -0.101) |
0.00314 (0.00311, 0.00316) |
0.410 (0.404, 0.415) |
-0.666 (-0.669, -0.661) |
0.00767 (0.00761, 0.00775) |
0.300 (0.298, 0.304) |
-0.097 (-0.118, -0.066) |
0.00133 (0.00126, 0.00142) |
0.453 (0.430, 0.468) |
-0.811 (-0.875, -0.743) |
|
|
|
|
|
|
|
BGS |
420 |
A |
0.5 |
1 |
543.950 (534.000, 552.900) |
552.667 (533.533, 562.233) |
0.00833 (0.00825, 0.00842) |
0.298 (0.297, 0.300) |
-0.092 (-0.102, -0.086) |
0.00331 (0.00321, 0.00336) |
0.413 (0.397, 0.423) |
-0.628 (-0.681, -0.591) |
0.00843 (0.00832, 0.00861) |
0.289 (0.286, 0.292) |
-0.034 (-0.053, -0.015) |
0.00147 (0.00146, 0.00149) |
0.427 (0.421, 0.431) |
-0.711 (-0.759, -0.649) |
|
|
|
|
|
|
|
SSW |
420 |
A |
0.5 |
1 |
- |
- |
0.01513 (0.01502, 0.01523) |
0.324 (0.324, 0.325) |
-0.256 (-0.265, -0.248) |
0.01378 (0.01357, 0.01399) |
0.338 (0.336, 0.339) |
-0.326 (-0.353, -0.298) |
0.01632 (0.01616, 0.01648) |
0.308 (0.305, 0.311) |
-0.164 (-0.181, -0.147) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
1 |
1 |
132.465 (129.485, 136.605) |
124.550 (122.386, 126.860) |
0.01479 (0.01451, 0.01506) |
0.310 (0.298, 0.322) |
-0.156 (-0.203, -0.099) |
0.00461 (0.00452, 0.00470) |
0.441 (0.428, 0.454) |
-0.831 (-0.867, -0.793) |
0.01553 (0.01537, 0.01567) |
0.291 (0.287, 0.296) |
-0.066 (-0.090, -0.047) |
0.00221 (0.00217, 0.00227) |
0.447 (0.440, 0.455) |
-0.801 (-0.834, -0.774) |
|
|
|
|
|
|
|
BGS |
70 |
A |
1 |
1 |
158.840 (155.755, 161.895) |
159.520 (154.070, 165.439) |
0.01786 (0.01751, 0.01823) |
0.286 (0.280, 0.293) |
-0.013 (-0.044, 0.015) |
0.00572 (0.00558, 0.00585) |
0.406 (0.393, 0.420) |
-0.628 (-0.681, -0.578) |
0.01781 (0.01770, 0.01793) |
0.279 (0.276, 0.283) |
0.015 (-0.005, 0.032) |
0.00256 (0.00252, 0.00260) |
0.421 (0.414, 0.428) |
-0.678 (-0.717, -0.644) |
|
|
|
|
|
|
|
SSW |
70 |
A |
1 |
1 |
- |
- |
0.01751 (0.01743, 0.01761) |
0.303 (0.299, 0.307) |
-0.141 (-0.153, -0.127) |
0.01529 (0.01490, 0.01567) |
0.329 (0.322, 0.336) |
-0.274 (-0.312, -0.235) |
0.01893 (0.01878, 0.01908) |
0.295 (0.291, 0.299) |
-0.078 (-0.089, -0.067) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
1 |
1 |
255.140 (251.560, 258.885) |
240.655 (236.046, 246.704) |
0.01332 (0.01313, 0.01353) |
0.306 (0.300, 0.312) |
-0.139 (-0.173, -0.107) |
0.00442 (0.00431, 0.00452) |
0.440 (0.431, 0.450) |
-0.812 (-0.855, -0.766) |
0.01396 (0.01383, 0.01408) |
0.291 (0.288, 0.294) |
-0.056 (-0.067, -0.045) |
0.00206 (0.00204, 0.00207) |
0.442 (0.435, 0.450) |
-0.775 (-0.804, -0.746) |
|
|
|
|
|
|
|
BGS |
140 |
A |
1 |
1 |
286.135 (277.523, 294.044) |
296.605 (289.942, 303.065) |
0.01568 (0.01543, 0.01588) |
0.282 (0.275, 0.289) |
-0.014 (-0.046, 0.018) |
0.00533 (0.00521, 0.00546) |
0.409 (0.399, 0.418) |
-0.652 (-0.688, -0.620) |
0.01565 (0.01549, 0.01581) |
0.279 (0.276, 0.282) |
0.019 (0.006, 0.031) |
0.00232 (0.00227, 0.00238) |
0.424 (0.418, 0.431) |
-0.686 (-0.708, -0.663) |
|
|
|
|
|
|
|
SSW |
140 |
A |
1 |
1 |
- |
- |
0.01753 (0.01734, 0.01772) |
0.303 (0.299, 0.307) |
-0.150 (-0.166, -0.134) |
0.01571 (0.01544, 0.01600) |
0.324 (0.319, 0.329) |
-0.264 (-0.291, -0.238) |
0.01909 (0.01898, 0.01918) |
0.292 (0.289, 0.296) |
-0.063 (-0.076, -0.047) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
1 |
1 |
352.765 (347.651, 357.914) |
342.140 (334.055, 350.319) |
0.01217 (0.01205, 0.01230) |
0.298 (0.294, 0.304) |
-0.106 (-0.120, -0.089) |
0.00416 (0.00407, 0.00425) |
0.436 (0.426, 0.447) |
-0.765 (-0.813, -0.717) |
0.01269 (0.01264, 0.01275) |
0.290 (0.287, 0.293) |
-0.053 (-0.067, -0.039) |
0.00192 (0.00189, 0.00195) |
0.440 (0.431, 0.448) |
-0.765 (-0.798, -0.731) |
|
|
|
|
|
|
|
BGS |
210 |
A |
1 |
1 |
391.990 (386.058, 397.150) |
405.655 (399.681, 412.030) |
0.01381 (0.01365, 0.01400) |
0.293 (0.290, 0.298) |
-0.042 (-0.064, -0.022) |
0.00487 (0.00480, 0.00496) |
0.410 (0.404, 0.417) |
-0.641 (-0.679, -0.607) |
0.01384 (0.01380, 0.01389) |
0.283 (0.280, 0.285) |
-0.001 (-0.008, 0.007) |
0.00210 (0.00208, 0.00213) |
0.433 (0.425, 0.440) |
-0.724 (-0.751, -0.697) |
|
|
|
|
|
|
|
SSW |
210 |
A |
1 |
1 |
- |
- |
0.01744 (0.01728, 0.01762) |
0.306 (0.304, 0.310) |
-0.160 (-0.171, -0.147) |
0.01556 (0.01537, 0.01579) |
0.329 (0.322, 0.334) |
-0.288 (-0.316, -0.257) |
0.01909 (0.01900, 0.01918) |
0.292 (0.290, 0.293) |
-0.055 (-0.066, -0.047) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
420 |
A |
1 |
1 |
567.750 (558.800, 576.750) |
575.933 (565.667, 587.267) |
0.00873 (0.00859, 0.00885) |
0.304 (0.298, 0.312) |
-0.129 (-0.181, -0.093) |
0.00346 (0.00338, 0.00354) |
0.418 (0.412, 0.423) |
-0.696 (-0.747, -0.647) |
0.00908 (0.00896, 0.00922) |
0.293 (0.292, 0.294) |
-0.060 (-0.069, -0.045) |
0.00153 (0.00151, 0.00154) |
0.453 (0.449, 0.457) |
-0.803 (-0.825, -0.791) |
|
|
|
|
|
|
|
|
BGS |
420 |
A |
1 |
1 |
610.633 (591.167, 638.267) |
644.833 (626.067, 671.467) |
0.00967 (0.00956, 0.00979) |
0.287 (0.281, 0.290) |
-0.028 (-0.053, -0.004) |
0.00378 (0.00372, 0.00385) |
0.400 (0.391, 0.406) |
-0.625 (-0.649, -0.601) |
0.00972 (0.00968, 0.00976) |
0.281 (0.279, 0.282) |
-0.001 (-0.012, 0.004) |
0.00162 (0.00157, 0.00166) |
0.428 (0.417, 0.433) |
-0.724 (-0.759, -0.665) |
|
|
|
|
|
|
|
SSW |
420 |
A |
1 |
1 |
- |
- |
0.01727 (0.01708, 0.01746) |
0.302 (0.296, 0.309) |
-0.147 (-0.168, -0.130) |
0.01558 (0.01519, 0.01597) |
0.323 (0.315, 0.332) |
-0.278 (-0.302, -0.266) |
0.01877 (0.01859, 0.01893) |
0.289 (0.281, 0.298) |
-0.060 (-0.082, -0.028) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
1.5 |
1 |
145.120 (142.110, 148.015) |
130.825 (126.540, 134.919) |
0.01605 (0.01575, 0.01637) |
0.302 (0.296, 0.307) |
-0.116 (-0.141, -0.093) |
0.00483 (0.00469, 0.00498) |
0.444 (0.430, 0.459) |
-0.852 (-0.902, -0.799) |
0.01684 (0.01665, 0.01701) |
0.289 (0.285, 0.292) |
-0.052 (-0.065, -0.036) |
0.00239 (0.00233, 0.00244) |
0.440 (0.427, 0.454) |
-0.788 (-0.836, -0.735) |
|
|
|
|
|
|
|
BGS |
70 |
A |
1.5 |
1 |
158.700 (153.026, 164.226) |
169.345 (163.915, 175.441) |
0.01863 (0.01820, 0.01905) |
0.284 (0.278, 0.291) |
-0.019 (-0.047, 0.020) |
0.00611 (0.00598, 0.00627) |
0.408 (0.393, 0.421) |
-0.623 (-0.685, -0.552) |
0.01852 (0.01836, 0.01867) |
0.277 (0.273, 0.280) |
0.018 (0.005, 0.031) |
0.00257 (0.00250, 0.00264) |
0.434 (0.422, 0.447) |
-0.741 (-0.796, -0.687) |
|
|
|
|
|
|
|
SSW |
70 |
A |
1.5 |
1 |
- |
- |
0.01860 (0.01847, 0.01874) |
0.299 (0.294, 0.304) |
-0.112 (-0.128, -0.094) |
0.01656 (0.01621, 0.01692) |
0.322 (0.317, 0.327) |
-0.231 (-0.264, -0.204) |
0.02011 (0.01996, 0.02030) |
0.290 (0.286, 0.294) |
-0.049 (-0.071, -0.024) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
1.5 |
1 |
265.115 (260.038, 270.554) |
254.335 (249.822, 259.099) |
0.01448 (0.01427, 0.01471) |
0.306 (0.303, 0.310) |
-0.129 (-0.150, -0.111) |
0.00469 (0.00464, 0.00475) |
0.440 (0.433, 0.449) |
-0.801 (-0.844, -0.761) |
0.01514 (0.01503, 0.01524) |
0.287 (0.285, 0.288) |
-0.026 (-0.035, -0.015) |
0.00219 (0.00216, 0.00222) |
0.441 (0.432, 0.448) |
-0.786 (-0.810, -0.759) |
|
|
|
|
|
|
|
BGS |
140 |
A |
1.5 |
1 |
290.585 (283.910, 296.756) |
303.790 (295.596, 311.181) |
0.01641 (0.01613, 0.01663) |
0.283 (0.278, 0.289) |
0.002 (-0.028, 0.033) |
0.00543 (0.00531, 0.00554) |
0.402 (0.391, 0.414) |
-0.618 (-0.680, -0.561) |
0.01633 (0.01623, 0.01642) |
0.277 (0.273, 0.281) |
0.026 (0.009, 0.042) |
0.00236 (0.00231, 0.00241) |
0.426 (0.415, 0.437) |
-0.719 (-0.753, -0.683) |
|
|
|
|
|
|
|
SSW |
140 |
A |
1.5 |
1 |
- |
- |
0.01853 (0.01836, 0.01871) |
0.299 (0.297, 0.301) |
-0.109 (-0.117, -0.101) |
0.01658 (0.01635, 0.01680) |
0.317 (0.314, 0.320) |
-0.234 (-0.258, -0.213) |
0.02022 (0.02010, 0.02034) |
0.284 (0.283, 0.286) |
-0.034 (-0.041, -0.027) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
1.5 |
1 |
371.995 (365.645, 378.343) |
363.805 (353.946, 375.109) |
0.01309 (0.01290, 0.01329) |
0.297 (0.292, 0.301) |
-0.097 (-0.116, -0.078) |
0.00445 (0.00436, 0.00454) |
0.426 (0.417, 0.434) |
-0.731 (-0.763, -0.696) |
0.01356 (0.01347, 0.01365) |
0.286 (0.284, 0.288) |
-0.030 (-0.044, -0.016) |
0.00203 (0.00199, 0.00206) |
0.444 (0.435, 0.451) |
-0.789 (-0.819, -0.757) |
|
|
|
|
|
|
|
BGS |
210 |
A |
1.5 |
1 |
402.320 (394.008, 411.702) |
415.620 (409.200, 422.897) |
0.01461 (0.01450, 0.01472) |
0.285 (0.280, 0.291) |
-0.017 (-0.043, 0.006) |
0.00500 (0.00492, 0.00507) |
0.407 (0.401, 0.413) |
-0.618 (-0.642, -0.584) |
0.01455 (0.01447, 0.01463) |
0.281 (0.278, 0.284) |
0.014 (-0.002, 0.027) |
0.00217 (0.00213, 0.00220) |
0.431 (0.423, 0.439) |
-0.720 (-0.752, -0.688) |
|
|
|
|
|
|
|
SSW |
210 |
A |
1.5 |
1 |
- |
- |
0.01858 (0.01841, 0.01874) |
0.299 (0.297, 0.301) |
-0.112 (-0.121, -0.100) |
0.01653 (0.01626, 0.01681) |
0.320 (0.314, 0.327) |
-0.245 (-0.277, -0.210) |
0.02006 (0.01999, 0.02014) |
0.287 (0.285, 0.289) |
-0.038 (-0.049, -0.027) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
2 |
1 |
144.570 (140.718, 148.157) |
141.268 (138.048, 144.467) |
0.01654 (0.01627, 0.01681) |
0.299 (0.294, 0.303) |
-0.111 (-0.140, -0.080) |
0.00523 (0.00513, 0.00534) |
0.433 (0.424, 0.442) |
-0.777 (-0.817, -0.734) |
0.01738 (0.01729, 0.01746) |
0.284 (0.281, 0.287) |
-0.015 (-0.028, -0.002) |
0.00239 (0.00233, 0.00244) |
0.440 (0.435, 0.446) |
-0.778 (-0.803, -0.756) |
|
|
|
|
|
|
|
BGS |
70 |
A |
2 |
1 |
161.607 (157.466, 165.465) |
168.335 (163.260, 173.291) |
0.01872 (0.01855, 0.01889) |
0.289 (0.283, 0.294) |
-0.036 (-0.063, -0.010) |
0.00608 (0.00596, 0.00619) |
0.408 (0.399, 0.416) |
-0.615 (-0.643, -0.583) |
0.01868 (0.01858, 0.01878) |
0.277 (0.274, 0.279) |
0.029 (0.018, 0.040) |
0.00259 (0.00254, 0.00265) |
0.428 (0.419, 0.436) |
-0.706 (-0.751, -0.665) |
|
|
|
|
|
|
|
SSW |
70 |
A |
2 |
1 |
- |
- |
0.01941 (0.01926, 0.01955) |
0.293 (0.290, 0.295) |
-0.076 (-0.090, -0.062) |
0.01712 (0.01686, 0.01736) |
0.313 (0.306, 0.320) |
-0.207 (-0.235, -0.182) |
0.02093 (0.02082, 0.02106) |
0.282 (0.279, 0.285) |
-0.004 (-0.019, 0.011) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
2 |
1 |
272.545 (268.845, 276.540) |
263.340 (258.588, 267.880) |
0.01486 (0.01466, 0.01502) |
0.296 (0.292, 0.299) |
-0.086 (-0.102, -0.068) |
0.00484 (0.00477, 0.00491) |
0.429 (0.423, 0.435) |
-0.757 (-0.779, -0.735) |
0.01545 (0.01538, 0.01553) |
0.284 (0.281, 0.287) |
-0.016 (-0.029, -0.005) |
0.00224 (0.00221, 0.00226) |
0.436 (0.430, 0.441) |
-0.749 (-0.774, -0.724) |
|
|
|
|
|
|
|
BGS |
140 |
A |
2 |
1 |
291.178 (285.652, 296.372) |
307.613 (302.403, 313.340) |
0.01656 (0.01644, 0.01670) |
0.284 (0.279, 0.288) |
-0.009 (-0.035, 0.012) |
0.00552 (0.00543, 0.00562) |
0.405 (0.397, 0.412) |
-0.633 (-0.661, -0.606) |
0.01646 (0.01640, 0.01653) |
0.278 (0.276, 0.280) |
0.025 (0.014, 0.035) |
0.00237 (0.00233, 0.00240) |
0.423 (0.417, 0.429) |
-0.681 (-0.715, -0.649) |
|
|
|
|
|
|
|
SSW |
140 |
A |
2 |
1 |
- |
- |
0.01916 (0.01903, 0.01929) |
0.293 (0.292, 0.295) |
-0.081 (-0.093, -0.070) |
0.01708 (0.01687, 0.01731) |
0.316 (0.311, 0.320) |
-0.213 (-0.238, -0.186) |
0.02065 (0.02055, 0.02075) |
0.282 (0.280, 0.285) |
-0.009 (-0.020, 0.002) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
2 |
1 |
386.010 (380.203, 392.285) |
369.700 (365.665, 374.296) |
0.01353 (0.01343, 0.01362) |
0.294 (0.291, 0.296) |
-0.063 (-0.078, -0.049) |
0.00449 (0.00444, 0.00454) |
0.422 (0.416, 0.429) |
-0.735 (-0.758, -0.712) |
0.01382 (0.01375, 0.01387) |
0.284 (0.281, 0.287) |
-0.012 (-0.024, -0.001) |
0.00208 (0.00206, 0.00211) |
0.433 (0.427, 0.440) |
-0.722 (-0.756, -0.691) |
|
|
|
|
|
|
|
BGS |
210 |
A |
2 |
1 |
404.238 (397.688, 410.882) |
421.575 (416.992, 426.527) |
0.01459 (0.01450, 0.01469) |
0.282 (0.279, 0.286) |
-0.006 (-0.019, 0.005) |
0.00505 (0.00501, 0.00510) |
0.408 (0.403, 0.413) |
-0.632 (-0.654, -0.609) |
0.01467 (0.01461, 0.01473) |
0.278 (0.276, 0.280) |
0.021 (0.011, 0.032) |
0.00219 (0.00216, 0.00222) |
0.431 (0.425, 0.436) |
-0.711 (-0.735, -0.686) |
|
|
|
|
|
|
|
SSW |
210 |
A |
2 |
1 |
- |
- |
0.01925 (0.01917, 0.01935) |
0.293 (0.291, 0.296) |
-0.079 (-0.087, -0.071) |
0.01699 (0.01683, 0.01714) |
0.313 (0.310, 0.316) |
-0.211 (-0.223, -0.198) |
0.02067 (0.02060, 0.02074) |
0.282 (0.281, 0.284) |
-0.008 (-0.017, 0.001) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
2.5 |
1 |
149.417 (146.808, 151.992) |
143.765 (140.414, 147.564) |
0.01718 (0.01699, 0.01738) |
0.295 (0.290, 0.300) |
-0.069 (-0.090, -0.047) |
0.00526 (0.00517, 0.00536) |
0.441 (0.430, 0.451) |
-0.804 (-0.844, -0.759) |
0.01768 (0.01758, 0.01777) |
0.281 (0.277, 0.283) |
-0.008 (-0.023, 0.006) |
0.00243 (0.00237, 0.00247) |
0.434 (0.425, 0.445) |
-0.744 (-0.792, -0.692) |
|
|
|
|
|
|
|
BGS |
70 |
A |
2.5 |
1 |
162.345 (158.930, 165.677) |
171.330 (167.286, 175.054) |
0.01913 (0.01894, 0.01937) |
0.282 (0.276, 0.287) |
0.000 (-0.030, 0.029) |
0.00620 (0.00609, 0.00630) |
0.411 (0.403, 0.418) |
-0.622 (-0.664, -0.578) |
0.01885 (0.01874, 0.01896) |
0.275 (0.273, 0.278) |
0.031 (0.018, 0.041) |
0.00263 (0.00258, 0.00268) |
0.423 (0.416, 0.430) |
-0.695 (-0.723, -0.664) |
|
|
|
|
|
|
|
SSW |
70 |
A |
2.5 |
1 |
- |
- |
0.01971 (0.01958, 0.01983) |
0.292 (0.290, 0.294) |
-0.062 (-0.074, -0.051) |
0.01744 (0.01714, 0.01777) |
0.311 (0.305, 0.316) |
-0.202 (-0.227, -0.176) |
0.02119 (0.02108, 0.02131) |
0.279 (0.277, 0.281) |
0.007 (-0.004, 0.018) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
2.5 |
1 |
280.250 (275.353, 284.762) |
273.303 (268.264, 278.140) |
0.01544 (0.01533, 0.01555) |
0.294 (0.290, 0.298) |
-0.070 (-0.093, -0.048) |
0.00495 (0.00488, 0.00502) |
0.423 (0.417, 0.431) |
-0.723 (-0.755, -0.697) |
0.01598 (0.01591, 0.01605) |
0.281 (0.279, 0.284) |
0.003 (-0.007, 0.014) |
0.00227 (0.00224, 0.00230) |
0.434 (0.427, 0.441) |
-0.745 (-0.772, -0.717) |
|
|
|
|
|
|
|
BGS |
140 |
A |
2.5 |
1 |
298.952 (293.249, 304.620) |
312.062 (306.383, 317.882) |
0.01682 (0.01665, 0.01699) |
0.284 (0.281, 0.287) |
-0.010 (-0.027, 0.008) |
0.00562 (0.00553, 0.00570) |
0.405 (0.401, 0.410) |
-0.625 (-0.649, -0.602) |
0.01672 (0.01666, 0.01678) |
0.277 (0.275, 0.278) |
0.027 (0.019, 0.036) |
0.00241 (0.00238, 0.00245) |
0.425 (0.419, 0.431) |
-0.714 (-0.751, -0.679) |
|
|
|
|
|
|
|
SSW |
140 |
A |
2.5 |
1 |
- |
- |
0.01973 (0.01963, 0.01984) |
0.290 (0.288, 0.293) |
-0.063 (-0.079, -0.050) |
0.01740 (0.01725, 0.01754) |
0.310 (0.307, 0.313) |
-0.191 (-0.210, -0.175) |
0.02099 (0.02092, 0.02106) |
0.280 (0.279, 0.282) |
-0.002 (-0.011, 0.007) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
2.5 |
1 |
383.658 (378.006, 389.884) |
379.620 (374.671, 384.535) |
0.01379 (0.01367, 0.01392) |
0.296 (0.292, 0.299) |
-0.079 (-0.096, -0.063) |
0.00462 (0.00457, 0.00467) |
0.427 (0.423, 0.432) |
-0.735 (-0.759, -0.710) |
0.01418 (0.01411, 0.01424) |
0.283 (0.281, 0.285) |
-0.001 (-0.011, 0.008) |
0.00209 (0.00207, 0.00211) |
0.433 (0.428, 0.439) |
-0.744 (-0.764, -0.725) |
|
|
|
|
|
|
|
BGS |
210 |
A |
2.5 |
1 |
404.440 (397.225, 410.712) |
424.558 (419.034, 430.310) |
0.01499 (0.01489, 0.01509) |
0.284 (0.280, 0.288) |
0.002 (-0.012, 0.017) |
0.00514 (0.00508, 0.00521) |
0.399 (0.394, 0.405) |
-0.582 (-0.604, -0.561) |
0.01484 (0.01478, 0.01489) |
0.277 (0.275, 0.280) |
0.021 (0.011, 0.029) |
0.00220 (0.00217, 0.00223) |
0.422 (0.415, 0.429) |
-0.696 (-0.727, -0.668) |
|
|
|
|
|
|
|
SSW |
210 |
A |
2.5 |
1 |
- |
- |
0.01961 (0.01954, 0.01967) |
0.290 (0.289, 0.292) |
-0.064 (-0.072, -0.055) |
0.01736 (0.01723, 0.01748) |
0.314 (0.312, 0.318) |
-0.210 (-0.219, -0.201) |
0.02103 (0.02097, 0.02108) |
0.281 (0.280, 0.282) |
-0.004 (-0.011, 0.003) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection on favorable
mutations |
lection on favorable
mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0.5 |
1 |
82.650 (80.793, 84.492) |
81.168 (78.513, 83.964) |
0.00863 (0.00846, 0.00880) |
0.333 (0.324, 0.341) |
-0.295 (-0.332, -0.260) |
0.00305 (0.00296, 0.00314) |
0.461 (0.451, 0.472) |
-0.891 (-0.936, -0.852) |
0.00907 (0.00894, 0.00919) |
0.323 (0.320, 0.325) |
-0.241 (-0.257, -0.221) |
0.00136 (0.00133, 0.00139) |
0.477 (0.469, 0.486) |
-0.948 (-1.001, -0.899) |
|
|
|
|
|
|
|
|
BGS |
70 |
X |
0.5 |
1 |
116.653 (113.050, 120.561) |
119.775 (116.340, 123.154) |
0.01311 (0.01291, 0.01334) |
0.285 (0.280, 0.290) |
-0.028 (-0.055, 0.004) |
0.00431 (0.00421, 0.00441) |
0.408 (0.400, 0.416) |
-0.621 (-0.659, -0.582) |
0.01316 (0.01308, 0.01325) |
0.284 (0.281, 0.287) |
-0.002 (-0.017, 0.012) |
0.00190 (0.00186, 0.00194) |
0.429 (0.419, 0.437) |
-0.706 (-0.750, -0.665) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0.5 |
1 |
- |
- |
0.00988 (0.00973, 0.01005) |
0.343 (0.338, 0.349) |
-0.361 (-0.387, -0.334) |
0.00914 (0.00901, 0.00929) |
0.364 (0.356, 0.371) |
-0.479 (-0.516, -0.444) |
0.01068 (0.01056, 0.01079) |
0.329 (0.325, 0.333) |
-0.270 (-0.293, -0.244) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0.5 |
1 |
166.683 (163.436, 170.139) |
159.940 (156.843, 162.817) |
0.00836 (0.00821, 0.00851) |
0.331 (0.324, 0.338) |
-0.287 (-0.317, -0.250) |
0.00300 (0.00295, 0.00304) |
0.459 (0.451, 0.467) |
-0.885 (-0.912, -0.853) |
0.00867 (0.00858, 0.00875) |
0.319 (0.315, 0.324) |
-0.212 (-0.232, -0.192) |
0.00136 (0.00133, 0.00138) |
0.463 (0.453, 0.472) |
-0.878 (-0.915, -0.836) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0.5 |
1 |
213.265 (209.021, 217.333) |
219.630 (216.265, 222.852) |
0.01181 (0.01170, 0.01194) |
0.291 (0.287, 0.294) |
-0.033 (-0.056, -0.009) |
0.00398 (0.00393, 0.00403) |
0.411 (0.403, 0.420) |
-0.619 (-0.651, -0.585) |
0.01185 (0.01179, 0.01192) |
0.282 (0.280, 0.285) |
0.007 (-0.006, 0.019) |
0.00173 (0.00170, 0.00176) |
0.427 (0.420, 0.434) |
-0.687 (-0.716, -0.662) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0.5 |
1 |
- |
- |
0.00984 (0.00968, 0.01001) |
0.341 (0.336, 0.347) |
-0.345 (-0.370, -0.319) |
0.00912 (0.00899, 0.00927) |
0.355 (0.349, 0.360) |
-0.441 (-0.467, -0.417) |
0.01056 (0.01042, 0.01071) |
0.328 (0.325, 0.332) |
-0.275 (-0.295, -0.256) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0.5 |
1 |
230.965 (227.262, 234.514) |
229.980 (225.074, 235.090) |
0.00774 (0.00766, 0.00782) |
0.327 (0.321, 0.333) |
-0.256 (-0.278, -0.230) |
0.00284 (0.00279, 0.00289) |
0.449 (0.442, 0.456) |
-0.839 (-0.878, -0.800) |
0.00798 (0.00792, 0.00804) |
0.318 (0.315, 0.321) |
-0.213 (-0.228, -0.196) |
0.00127 (0.00125, 0.00129) |
0.464 (0.459, 0.469) |
-0.912 (-0.926, -0.896) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0.5 |
1 |
299.320 (295.211, 303.536) |
307.038 (301.335, 311.942) |
0.01080 (0.01070, 0.01089) |
0.288 (0.284, 0.291) |
-0.024 (-0.038, -0.006) |
0.00369 (0.00364, 0.00375) |
0.415 (0.409, 0.421) |
-0.654 (-0.678, -0.632) |
0.01073 (0.01067, 0.01079) |
0.284 (0.281, 0.286) |
-0.008 (-0.017, 0.003) |
0.00162 (0.00160, 0.00164) |
0.428 (0.423, 0.434) |
-0.703 (-0.724, -0.683) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0.5 |
1 |
- |
- |
0.00980 (0.00967, 0.00992) |
0.341 (0.337, 0.345) |
-0.362 (-0.378, -0.345) |
0.00913 (0.00897, 0.00927) |
0.355 (0.350, 0.360) |
-0.441 (-0.463, -0.416) |
0.01055 (0.01046, 0.01065) |
0.328 (0.326, 0.330) |
-0.281 (-0.291, -0.270) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
420 |
X |
0.5 |
1 |
433.250 (NA, NA) |
424.100 (NA, NA) |
0.00672 (NA, NA) |
0.329 (NA, NA) |
-0.195 (NA, NA) |
0.00258 (NA, NA) |
0.438 (NA, NA) |
-0.792 (NA, NA) |
0.00663 (NA, NA) |
0.316 (NA, NA) |
-0.177 (NA, NA) |
0.00118 (NA, NA) |
0.448 (NA, NA) |
-0.791 (NA, NA) |
|
|
|
|
|
|
|
|
BGS |
420 |
X |
0.5 |
1 |
495.317 (469.383, 517.883) |
506.167 (498.833, 517.783) |
0.00810 (0.00802, 0.00817) |
0.293 (0.287, 0.300) |
-0.026 (-0.053, -0.012) |
0.00306 (0.00303, 0.00308) |
0.412 (0.401, 0.428) |
-0.656 (-0.719, -0.576) |
0.00810 (0.00804, 0.00814) |
0.291 (0.288, 0.296) |
-0.034 (-0.062, -0.011) |
0.00134 (0.00128, 0.00139) |
0.431 (0.423, 0.442) |
-0.724 (-0.759, -0.683) |
|
|
|
|
|
|
|
SSW |
420 |
X |
0.5 |
1 |
- |
- |
0.00975 (0.00966, 0.00983) |
0.340 (0.337, 0.346) |
-0.355 (-0.375, -0.337) |
0.00906 (0.00894, 0.00915) |
0.354 (0.348, 0.360) |
-0.426 (-0.454, -0.392) |
0.01046 (0.01041, 0.01049) |
0.324 (0.317, 0.329) |
-0.262 (-0.287, -0.233) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1 |
1 |
101.810 (98.405, 105.190) |
97.312 (95.378, 99.197) |
0.01170 (0.01154, 0.01190) |
0.310 (0.305, 0.314) |
-0.178 (-0.204, -0.152) |
0.00366 (0.00358, 0.00373) |
0.448 (0.437, 0.459) |
-0.847 (-0.877, -0.815) |
0.01256 (0.01244, 0.01271) |
0.295 (0.292, 0.299) |
-0.081 (-0.100, -0.062) |
0.00169 (0.00165, 0.00174) |
0.463 (0.451, 0.474) |
-0.884 (-0.926, -0.842) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1 |
1 |
122.633 (119.131, 126.330) |
128.100 (124.611, 131.500) |
0.01439 (0.01422, 0.01457) |
0.287 (0.282, 0.291) |
-0.016 (-0.051, 0.019) |
0.00464 (0.00457, 0.00473) |
0.401 (0.392, 0.411) |
-0.614 (-0.659, -0.569) |
0.01432 (0.01419, 0.01443) |
0.281 (0.279, 0.283) |
0.003 (-0.008, 0.014) |
0.00200 (0.00196, 0.00204) |
0.428 (0.418, 0.439) |
-0.713 (-0.751, -0.672) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1 |
1 |
- |
- |
0.01186 (0.01168, 0.01202) |
0.324 (0.318, 0.330) |
-0.270 (-0.295, -0.244) |
0.01059 (0.01038, 0.01080) |
0.337 (0.330, 0.344) |
-0.359 (-0.393, -0.326) |
0.01304 (0.01291, 0.01316) |
0.306 (0.302, 0.310) |
-0.157 (-0.175, -0.139) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
1 |
1 |
199.370 (195.068, 203.508) |
185.640 (182.985, 188.870) |
0.01100 (0.01084, 0.01117) |
0.309 (0.304, 0.313) |
-0.159 (-0.187, -0.129) |
0.00349 (0.00344, 0.00355) |
0.441 (0.434, 0.448) |
-0.825 (-0.853, -0.800) |
0.01167 (0.01160, 0.01175) |
0.295 (0.293, 0.297) |
-0.082 (-0.091, -0.072) |
0.00164 (0.00162, 0.00166) |
0.449 (0.441, 0.457) |
-0.813 (-0.855, -0.770) |
|
|
|
|
|
|
|
BGS |
140 |
X |
1 |
1 |
233.472 (230.730, 236.617) |
249.172 (244.804, 253.851) |
0.01359 (0.01345, 0.01374) |
0.280 (0.276, 0.284) |
-0.002 (-0.018, 0.014) |
0.00447 (0.00439, 0.00455) |
0.404 (0.396, 0.411) |
-0.609 (-0.632, -0.585) |
0.01348 (0.01342, 0.01355) |
0.278 (0.277, 0.280) |
0.019 (0.011, 0.026) |
0.00191 (0.00189, 0.00193) |
0.424 (0.417, 0.432) |
-0.679 (-0.706, -0.648) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1 |
1 |
- |
- |
0.01278 (0.01269, 0.01287) |
0.314 (0.312, 0.316) |
-0.199 (-0.212, -0.185) |
0.01133 (0.01118, 0.01149) |
0.332 (0.329, 0.335) |
-0.327 (-0.347, -0.307) |
0.01418 (0.01407, 0.01428) |
0.297 (0.295, 0.299) |
-0.097 (-0.108, -0.085) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1 |
1 |
280.955 (276.228, 285.361) |
270.243 (266.518, 274.162) |
0.01011 (0.01003, 0.01018) |
0.309 (0.305, 0.313) |
-0.161 (-0.181, -0.143) |
0.00336 (0.00331, 0.00340) |
0.438 (0.433, 0.444) |
-0.815 (-0.841, -0.790) |
0.01079 (0.01074, 0.01083) |
0.292 (0.290, 0.295) |
-0.071 (-0.084, -0.059) |
0.00154 (0.00152, 0.00156) |
0.451 (0.446, 0.457) |
-0.830 (-0.851, -0.810) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1 |
1 |
328.413 (323.183, 333.587) |
341.590 (335.712, 346.338) |
0.01236 (0.01227, 0.01245) |
0.282 (0.279, 0.285) |
0.006 (-0.012, 0.026) |
0.00408 (0.00404, 0.00413) |
0.404 (0.399, 0.409) |
-0.630 (-0.655, -0.607) |
0.01232 (0.01227, 0.01237) |
0.279 (0.277, 0.280) |
0.019 (0.011, 0.025) |
0.00178 (0.00176, 0.00180) |
0.425 (0.419, 0.430) |
-0.696 (-0.717, -0.676) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1 |
1 |
- |
- |
0.01275 (0.01268, 0.01282) |
0.315 (0.312, 0.317) |
-0.212 (-0.222, -0.200) |
0.01137 (0.01126, 0.01149) |
0.331 (0.326, 0.336) |
-0.314 (-0.333, -0.295) |
0.01411 (0.01405, 0.01418) |
0.296 (0.293, 0.298) |
-0.092 (-0.105, -0.080) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
420 |
X |
1 |
1 |
465.550 (457.150, 473.800) |
472.867 (458.533, 493.983) |
0.00768 (0.00759, 0.00775) |
0.309 (0.303, 0.322) |
-0.153 (-0.207, -0.111) |
0.00285 (0.00276, 0.00295) |
0.419 (0.415, 0.422) |
-0.713 (-0.749, -0.662) |
0.00796 (0.00782, 0.00803) |
0.298 (0.297, 0.300) |
-0.105 (-0.117, -0.097) |
0.00129 (0.00128, 0.00130) |
0.444 (0.434, 0.451) |
-0.783 (-0.803, -0.752) |
|
|
|
|
|
|
|
BGS |
420 |
X |
1 |
1 |
535.100 (515.550, 546.650) |
560.250 (556.500, 566.350) |
0.00900 (0.00886, 0.00913) |
0.292 (0.289, 0.295) |
-0.061 (-0.067, -0.051) |
0.00334 (0.00329, 0.00338) |
0.403 (0.380, 0.416) |
-0.599 (-0.654, -0.553) |
0.00915 (0.00908, 0.00924) |
0.280 (0.274, 0.283) |
0.011 (-0.010, 0.043) |
0.00144 (0.00140, 0.00146) |
0.424 (0.415, 0.439) |
-0.670 (-0.742, -0.612) |
|
|
|
|
|
|
|
SSW |
420 |
X |
1 |
1 |
- |
- |
0.01158 (0.01150, 0.01167) |
0.314 (0.304, 0.326) |
-0.224 (-0.255, -0.171) |
0.01036 (0.01013, 0.01049) |
0.333 (0.324, 0.347) |
-0.341 (-0.369, -0.316) |
0.01272 (0.01258, 0.01279) |
0.299 (0.292, 0.307) |
-0.125 (-0.167, -0.079) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1.5 |
1 |
105.210 (102.333, 108.049) |
98.690 (95.840, 101.275) |
0.01166 (0.01149, 0.01183) |
0.317 (0.311, 0.323) |
-0.204 (-0.236, -0.168) |
0.00367 (0.00359, 0.00376) |
0.455 (0.445, 0.466) |
-0.871 (-0.917, -0.821) |
0.01261 (0.01248, 0.01274) |
0.295 (0.293, 0.298) |
-0.087 (-0.104, -0.072) |
0.00172 (0.00168, 0.00176) |
0.440 (0.431, 0.450) |
-0.807 (-0.841, -0.775) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1.5 |
1 |
123.957 (120.488, 127.449) |
129.798 (124.994, 133.701) |
0.01472 (0.01451, 0.01492) |
0.280 (0.276, 0.285) |
0.017 (-0.005, 0.037) |
0.00469 (0.00460, 0.00480) |
0.411 (0.401, 0.419) |
-0.665 (-0.704, -0.620) |
0.01481 (0.01470, 0.01491) |
0.279 (0.276, 0.281) |
0.020 (0.003, 0.038) |
0.00202 (0.00198, 0.00206) |
0.424 (0.416, 0.431) |
-0.700 (-0.735, -0.668) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1.5 |
1 |
- |
- |
0.01285 (0.01270, 0.01299) |
0.313 (0.309, 0.316) |
-0.203 (-0.227, -0.180) |
0.01153 (0.01136, 0.01171) |
0.334 (0.327, 0.340) |
-0.325 (-0.355, -0.296) |
0.01425 (0.01414, 0.01437) |
0.295 (0.292, 0.298) |
-0.097 (-0.113, -0.082) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
1.5 |
1 |
196.732 (192.060, 201.177) |
190.357 (186.568, 194.044) |
0.01096 (0.01085, 0.01105) |
0.306 (0.299, 0.313) |
-0.155 (-0.184, -0.129) |
0.00352 (0.00347, 0.00357) |
0.440 (0.432, 0.448) |
-0.809 (-0.843, -0.778) |
0.01170 (0.01163, 0.01176) |
0.292 (0.290, 0.294) |
-0.070 (-0.079, -0.061) |
0.00163 (0.00159, 0.00165) |
0.445 (0.436, 0.454) |
-0.807 (-0.844, -0.773) |
|
|
|
|
|
|
|
BGS |
140 |
X |
1.5 |
1 |
235.860 (231.803, 239.847) |
245.490 (239.817, 251.605) |
0.01355 (0.01344, 0.01366) |
0.286 (0.282, 0.290) |
-0.014 (-0.032, 0.001) |
0.00444 (0.00438, 0.00451) |
0.403 (0.394, 0.410) |
-0.609 (-0.640, -0.578) |
0.01353 (0.01348, 0.01359) |
0.279 (0.277, 0.281) |
0.021 (0.011, 0.031) |
0.00190 (0.00187, 0.00193) |
0.422 (0.416, 0.426) |
-0.693 (-0.717, -0.670) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1.5 |
1 |
- |
- |
0.01286 (0.01278, 0.01294) |
0.314 (0.311, 0.317) |
-0.200 (-0.217, -0.182) |
0.01140 (0.01123, 0.01157) |
0.336 (0.330, 0.342) |
-0.341 (-0.369, -0.315) |
0.01423 (0.01413, 0.01431) |
0.297 (0.294, 0.300) |
-0.092 (-0.108, -0.079) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1.5 |
1 |
284.993 (280.546, 290.022) |
272.637 (268.101, 276.816) |
0.01020 (0.01012, 0.01028) |
0.305 (0.302, 0.308) |
-0.145 (-0.166, -0.128) |
0.00336 (0.00330, 0.00340) |
0.433 (0.427, 0.439) |
-0.782 (-0.818, -0.748) |
0.01084 (0.01077, 0.01090) |
0.291 (0.289, 0.293) |
-0.056 (-0.066, -0.047) |
0.00155 (0.00154, 0.00157) |
0.442 (0.438, 0.447) |
-0.804 (-0.818, -0.790) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1.5 |
1 |
331.985 (327.625, 336.672) |
344.405 (338.725, 349.609) |
0.01247 (0.01238, 0.01257) |
0.284 (0.281, 0.287) |
-0.012 (-0.028, 0.005) |
0.00411 (0.00406, 0.00417) |
0.402 (0.397, 0.407) |
-0.625 (-0.648, -0.602) |
0.01234 (0.01229, 0.01239) |
0.280 (0.278, 0.281) |
0.016 (0.008, 0.024) |
0.00178 (0.00176, 0.00181) |
0.427 (0.419, 0.434) |
-0.699 (-0.737, -0.660) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1.5 |
1 |
- |
- |
0.01277 (0.01265, 0.01289) |
0.314 (0.312, 0.316) |
-0.202 (-0.212, -0.191) |
0.01130 (0.01116, 0.01145) |
0.333 (0.328, 0.337) |
-0.312 (-0.333, -0.292) |
0.01412 (0.01403, 0.01419) |
0.296 (0.295, 0.298) |
-0.092 (-0.099, -0.085) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70g |
X |
2 |
1 |
110.355 (107.633, 113.060) |
102.992 (99.381, 107.074) |
0.01253 (0.01235, 0.01272) |
0.307 (0.303, 0.311) |
-0.144 (-0.174, -0.117) |
0.00381 (0.00372, 0.00391) |
0.453 (0.443, 0.463) |
-0.890 (-0.923, -0.857) |
0.01423 (0.01418, 0.01428) |
0.285 (0.282, 0.288) |
-0.020 (-0.031, -0.008) |
0.00180 (0.00176, 0.00184) |
0.453 (0.443, 0.463) |
-0.821 (-0.856, -0.787) |
|
|
|
|
|
|
|
BGS |
70g |
X |
2 |
1 |
129.815 (126.241, 133.872) |
130.157 (127.313, 132.797) |
0.01531 (0.01515, 0.01547) |
0.286 (0.281, 0.291) |
-0.030 (-0.058, -0.002) |
0.00473 (0.00463, 0.00483) |
0.407 (0.398, 0.415) |
-0.633 (-0.668, -0.598) |
0.01529 (0.01524, 0.01534) |
0.276 (0.274, 0.278) |
0.029 (0.018, 0.039) |
0.00208 (0.00203, 0.00213) |
0.427 (0.421, 0.434) |
-0.707 (-0.750, -0.672) |
|
|
|
|
|
|
|
SSW |
70g |
X |
2 |
1 |
- |
- |
0.01352 (0.01339, 0.01367) |
0.309 (0.305, 0.313) |
-0.177 (-0.199, -0.155) |
0.01200 (0.01179, 0.01220) |
0.325 (0.319, 0.332) |
-0.304 (-0.339, -0.269) |
0.01594 (0.01587, 0.01602) |
0.284 (0.282, 0.286) |
-0.013 (-0.024, -0.004) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
2 |
1 |
207.197 (203.727, 210.842) |
197.355 (193.833, 201.230) |
0.01143 (0.01130, 0.01155) |
0.305 (0.300, 0.310) |
-0.136 (-0.164, -0.110) |
0.00364 (0.00358, 0.00369) |
0.438 (0.432, 0.445) |
-0.798 (-0.825, -0.772) |
0.01224 (0.01219, 0.01229) |
0.289 (0.287, 0.292) |
-0.049 (-0.061, -0.040) |
0.00170 (0.00167, 0.00172) |
0.438 (0.431, 0.446) |
-0.777 (-0.805, -0.752) |
|
|
|
|
|
|
|
|
BGS |
140 |
X |
2 |
1 |
236.852 (232.181, 241.345) |
244.410 (241.423, 247.539) |
0.01389 (0.01373, 0.01403) |
0.281 (0.276, 0.286) |
-0.001 (-0.024, 0.021) |
0.00439 (0.00434, 0.00445) |
0.403 (0.393, 0.411) |
-0.616 (-0.648, -0.587) |
0.01377 (0.01370, 0.01384) |
0.277 (0.274, 0.279) |
0.025 (0.013, 0.037) |
0.00193 (0.00191, 0.00195) |
0.422 (0.416, 0.429) |
-0.695 (-0.722, -0.662) |
|
|
|
|
|
|
|
SSW |
140 |
X |
2 |
1 |
- |
- |
0.01346 (0.01338, 0.01354) |
0.307 (0.306, 0.309) |
-0.166 (-0.179, -0.152) |
0.01177 (0.01163, 0.01193) |
0.328 (0.324, 0.332) |
-0.297 (-0.320, -0.273) |
0.01489 (0.01481, 0.01496) |
0.292 (0.290, 0.294) |
-0.067 (-0.079, -0.056) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210g |
X |
2 |
1 |
295.938 (290.903, 300.288) |
286.697 (281.245, 291.644) |
0.01098 (0.01087, 0.01110) |
0.304 (0.301, 0.307) |
-0.125 (-0.145, -0.106) |
0.00354 (0.00348, 0.00359) |
0.439 (0.434, 0.445) |
-0.795 (-0.818, -0.770) |
0.01197 (0.01193, 0.01201) |
0.285 (0.284, 0.286) |
-0.016 (-0.023, -0.010) |
0.00163 (0.00161, 0.00165) |
0.448 (0.443, 0.453) |
-0.801 (-0.822, -0.780) |
|
|
|
|
|
|
|
BGS |
210g |
X |
2 |
1 |
339.188 (334.493, 344.049) |
358.848 (353.935, 363.556) |
0.01293 (0.01282, 0.01305) |
0.282 (0.277, 0.286) |
-0.002 (-0.021, 0.016) |
0.00429 (0.00423, 0.00434) |
0.404 (0.398, 0.410) |
-0.606 (-0.627, -0.580) |
0.01282 (0.01278, 0.01286) |
0.278 (0.276, 0.280) |
0.019 (0.010, 0.028) |
0.00184 (0.00181, 0.00186) |
0.424 (0.419, 0.429) |
-0.691 (-0.716, -0.662) |
|
|
|
|
|
|
|
SSW |
210g |
X |
2 |
1 |
- |
- |
0.01358 (0.01349, 0.01367) |
0.306 (0.304, 0.308) |
-0.162 (-0.172, -0.152) |
0.01190 (0.01177, 0.01202) |
0.326 (0.322, 0.330) |
-0.289 (-0.309, -0.267) |
0.01570 (0.01565, 0.01574) |
0.283 (0.282, 0.285) |
-0.015 (-0.021, -0.009) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2.5 |
1 |
107.500 (103.665, 111.654) |
101.930 (97.556, 106.119) |
0.01288 (0.01267, 0.01312) |
0.302 (0.291, 0.310) |
-0.116 (-0.165, -0.057) |
0.00383 (0.00367, 0.00397) |
0.450 (0.435, 0.465) |
-0.882 (-0.953, -0.800) |
0.01385 (0.01372, 0.01398) |
0.285 (0.281, 0.288) |
-0.030 (-0.048, -0.010) |
0.00177 (0.00173, 0.00182) |
0.447 (0.432, 0.460) |
-0.836 (-0.905, -0.759) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2.5 |
1 |
126.175 (122.116, 130.579) |
131.435 (128.495, 134.769) |
0.01520 (0.01502, 0.01539) |
0.285 (0.278, 0.291) |
-0.012 (-0.044, 0.021) |
0.00473 (0.00467, 0.00481) |
0.407 (0.398, 0.419) |
-0.617 (-0.660, -0.574) |
0.01517 (0.01507, 0.01527) |
0.276 (0.273, 0.278) |
0.031 (0.015, 0.047) |
0.00206 (0.00201, 0.00211) |
0.423 (0.410, 0.435) |
-0.675 (-0.729, -0.626) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2.5 |
1 |
- |
- |
0.01381 (0.01366, 0.01393) |
0.302 (0.295, 0.309) |
-0.147 (-0.178, -0.119) |
0.01200 (0.01168, 0.01233) |
0.322 (0.313, 0.333) |
-0.273 (-0.325, -0.220) |
0.01541 (0.01527, 0.01555) |
0.287 (0.284, 0.291) |
-0.036 (-0.054, -0.020) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
2.5 |
1 |
209.255 (204.536, 214.838) |
198.615 (192.418, 205.494) |
0.01179 (0.01166, 0.01192) |
0.300 (0.296, 0.304) |
-0.126 (-0.142, -0.108) |
0.00369 (0.00357, 0.00380) |
0.434 (0.422, 0.447) |
-0.785 (-0.846, -0.727) |
0.01268 (0.01260, 0.01276) |
0.285 (0.281, 0.289) |
-0.024 (-0.042, -0.008) |
0.00171 (0.00166, 0.00175) |
0.433 (0.425, 0.441) |
-0.757 (-0.789, -0.717) |
|
|
|
|
|
|
|
BGS |
140 |
X |
2.5 |
1 |
234.795 (228.681, 240.802) |
242.715 (237.876, 248.285) |
0.01394 (0.01376, 0.01414) |
0.281 (0.276, 0.285) |
-0.004 (-0.033, 0.023) |
0.00446 (0.00437, 0.00455) |
0.400 (0.391, 0.408) |
-0.604 (-0.653, -0.558) |
0.01397 (0.01388, 0.01408) |
0.278 (0.274, 0.282) |
0.025 (0.014, 0.038) |
0.00189 (0.00186, 0.00192) |
0.430 (0.422, 0.439) |
-0.737 (-0.786, -0.701) |
|
|
|
|
|
|
|
SSW |
140 |
X |
2.5 |
1 |
- |
- |
0.01385 (0.01375, 0.01397) |
0.301 (0.298, 0.302) |
-0.131 (-0.145, -0.118) |
0.01205 (0.01195, 0.01215) |
0.324 (0.318, 0.329) |
-0.279 (-0.312, -0.250) |
0.01523 (0.01511, 0.01536) |
0.288 (0.286, 0.290) |
-0.049 (-0.062, -0.037) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
2.5 |
1 |
307.395 (300.041, 315.895) |
291.720 (284.251, 299.399) |
0.01113 (0.01100, 0.01128) |
0.299 (0.294, 0.305) |
-0.111 (-0.130, -0.091) |
0.00358 (0.00349, 0.00367) |
0.432 (0.421, 0.442) |
-0.776 (-0.812, -0.734) |
0.01174 (0.01167, 0.01180) |
0.285 (0.283, 0.288) |
-0.025 (-0.036, -0.015) |
0.00166 (0.00164, 0.00169) |
0.441 (0.436, 0.446) |
-0.755 (-0.785, -0.727) |
|
|
|
|
|
|
|
BGS |
210 |
X |
2.5 |
1 |
332.645 (325.116, 340.129) |
354.320 (340.778, 366.430) |
0.01280 (0.01262, 0.01301) |
0.280 (0.275, 0.285) |
0.001 (-0.029, 0.031) |
0.00424 (0.00412, 0.00434) |
0.405 (0.398, 0.411) |
-0.609 (-0.632, -0.588) |
0.01277 (0.01270, 0.01284) |
0.279 (0.278, 0.281) |
0.011 (0.002, 0.018) |
0.00180 (0.00177, 0.00183) |
0.426 (0.420, 0.431) |
-0.689 (-0.709, -0.670) |
|
|
|
|
|
|
|
SSW |
210 |
X |
2.5 |
1 |
- |
- |
0.01381 (0.01372, 0.01392) |
0.301 (0.297, 0.304) |
-0.135 (-0.144, -0.125) |
0.01205 (0.01186, 0.01224) |
0.324 (0.320, 0.329) |
-0.264 (-0.285, -0.244) |
0.01526 (0.01519, 0.01533) |
0.288 (0.285, 0.290) |
-0.043 (-0.054, -0.033) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection on favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0.5 |
1 |
72.897 (69.708, 75.682) |
72.310 (69.163, 75.307) |
0.00715 (0.00702, 0.00729) |
0.360 (0.352, 0.367) |
-0.434 (-0.471, -0.398) |
0.00270 (0.00261, 0.00280) |
0.473 (0.458, 0.486) |
-0.972 (-1.032, -0.918) |
0.00754 (0.00739, 0.00769) |
0.349 (0.344, 0.355) |
-0.374 (-0.404, -0.344) |
0.00122 (0.00117, 0.00125) |
0.495 (0.479, 0.510) |
-1.021 (-1.086, -0.965) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0.5 |
1 |
114.877 (112.041, 117.312) |
120.998 (118.063, 123.542) |
0.01322 (0.01306, 0.01339) |
0.284 (0.280, 0.289) |
-0.005 (-0.027, 0.019) |
0.00438 (0.00429, 0.00447) |
0.412 (0.405, 0.420) |
-0.640 (-0.678, -0.602) |
0.01315 (0.01305, 0.01324) |
0.282 (0.279, 0.285) |
0.010 (-0.005, 0.026) |
0.00187 (0.00184, 0.00190) |
0.430 (0.420, 0.439) |
-0.683 (-0.727, -0.639) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0.5 |
1 |
- |
- |
0.00767 (0.00746, 0.00789) |
0.377 (0.372, 0.383) |
-0.568 (-0.598, -0.538) |
0.00703 (0.00683, 0.00725) |
0.392 (0.386, 0.399) |
-0.634 (-0.674, -0.596) |
0.00818 (0.00798, 0.00837) |
0.364 (0.359, 0.369) |
-0.488 (-0.514, -0.460) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0.5 |
1 |
141.550 (138.908, 144.254) |
138.868 (134.965, 142.620) |
0.00675 (0.00662, 0.00687) |
0.352 (0.346, 0.358) |
-0.398 (-0.432, -0.367) |
0.00255 (0.00249, 0.00261) |
0.475 (0.467, 0.483) |
-0.966 (-1.009, -0.923) |
0.00708 (0.00699, 0.00719) |
0.342 (0.338, 0.346) |
-0.352 (-0.371, -0.333) |
0.00117 (0.00114, 0.00119) |
0.484 (0.476, 0.490) |
-0.982 (-1.008, -0.953) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0.5 |
1 |
211.597 (206.773, 216.257) |
222.620 (218.770, 226.422) |
0.01179 (0.01168, 0.01189) |
0.289 (0.284, 0.293) |
-0.035 (-0.056, -0.015) |
0.00399 (0.00392, 0.00406) |
0.403 (0.397, 0.409) |
-0.632 (-0.658, -0.606) |
0.01183 (0.01175, 0.01190) |
0.283 (0.281, 0.285) |
0.000 (-0.013, 0.012) |
0.00173 (0.00170, 0.00176) |
0.432 (0.426, 0.438) |
-0.730 (-0.758, -0.700) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0.5 |
1 |
- |
- |
0.00765 (0.00753, 0.00777) |
0.375 (0.371, 0.378) |
-0.531 (-0.549, -0.514) |
0.00711 (0.00699, 0.00726) |
0.388 (0.383, 0.394) |
-0.608 (-0.630, -0.584) |
0.00826 (0.00816, 0.00836) |
0.361 (0.357, 0.365) |
-0.457 (-0.478, -0.437) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0.5 |
1 |
205.275 (200.522, 210.464) |
200.440 (196.223, 204.487) |
0.00649 (0.00641, 0.00658) |
0.345 (0.339, 0.351) |
-0.367 (-0.392, -0.338) |
0.00251 (0.00246, 0.00255) |
0.471 (0.464, 0.478) |
-0.947 (-0.980, -0.913) |
0.00685 (0.00679, 0.00692) |
0.335 (0.332, 0.337) |
-0.303 (-0.317, -0.290) |
0.00112 (0.00111, 0.00115) |
0.481 (0.473, 0.490) |
-0.977 (-1.011, -0.943) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0.5 |
1 |
298.853 (294.875, 302.745) |
314.145 (308.022, 320.206) |
0.01066 (0.01058, 0.01074) |
0.284 (0.280, 0.287) |
-0.015 (-0.031, 0.001) |
0.00375 (0.00369, 0.00381) |
0.402 (0.395, 0.409) |
-0.609 (-0.637, -0.579) |
0.01072 (0.01067, 0.01077) |
0.282 (0.279, 0.284) |
0.003 (-0.009, 0.015) |
0.00162 (0.00160, 0.00163) |
0.425 (0.417, 0.433) |
-0.685 (-0.723, -0.650) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0.5 |
1 |
- |
- |
0.00770 (0.00759, 0.00781) |
0.370 (0.366, 0.374) |
-0.511 (-0.530, -0.491) |
0.00721 (0.00710, 0.00732) |
0.383 (0.377, 0.388) |
-0.569 (-0.589, -0.549) |
0.00828 (0.00813, 0.00841) |
0.356 (0.353, 0.359) |
-0.436 (-0.448, -0.422) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1 |
1 |
85.900 (82.835, 88.257) |
81.118 (78.645, 83.389) |
0.00915 (0.00898, 0.00933) |
0.340 (0.334, 0.346) |
-0.335 (-0.367, -0.303) |
0.00307 (0.00299, 0.00314) |
0.468 (0.457, 0.480) |
-0.963 (-0.995, -0.924) |
0.00988 (0.00975, 0.01001) |
0.322 (0.318, 0.327) |
-0.236 (-0.257, -0.217) |
0.00142 (0.00139, 0.00145) |
0.474 (0.460, 0.488) |
-0.978 (-1.031, -0.919) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1 |
1 |
122.180 (118.439, 126.160) |
131.357 (127.639, 135.035) |
0.01439 (0.01420, 0.01458) |
0.286 (0.281, 0.292) |
-0.012 (-0.045, 0.019) |
0.00468 (0.00458, 0.00478) |
0.405 (0.395, 0.415) |
-0.619 (-0.657, -0.583) |
0.01438 (0.01427, 0.01449) |
0.279 (0.276, 0.282) |
0.016 (0.000, 0.029) |
0.00200 (0.00195, 0.00204) |
0.426 (0.415, 0.436) |
-0.691 (-0.732, -0.646) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1 |
1 |
- |
- |
0.00984 (0.00966, 0.01001) |
0.346 (0.340, 0.352) |
-0.411 (-0.437, -0.383) |
0.00887 (0.00872, 0.00901) |
0.373 (0.365, 0.381) |
-0.514 (-0.546, -0.485) |
0.01112 (0.01101, 0.01126) |
0.325 (0.321, 0.329) |
-0.266 (-0.286, -0.245) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
1 |
1 |
165.738 (162.798, 168.425) |
161.950 (157.660, 166.902) |
0.00866 (0.00855, 0.00876) |
0.333 (0.326, 0.340) |
-0.310 (-0.336, -0.281) |
0.00300 (0.00293, 0.00307) |
0.459 (0.448, 0.468) |
-0.916 (-0.960, -0.877) |
0.00930 (0.00920, 0.00940) |
0.318 (0.315, 0.321) |
-0.223 (-0.237, -0.210) |
0.00136 (0.00133, 0.00139) |
0.477 (0.469, 0.485) |
-0.936 (-0.967, -0.904) |
|
|
|
|
|
|
|
BGS |
140 |
X |
1 |
1 |
229.970 (225.534, 233.975) |
235.270 (230.693, 240.209) |
0.01294 (0.01282, 0.01305) |
0.288 (0.285, 0.291) |
-0.034 (-0.051, -0.018) |
0.00426 (0.00418, 0.00433) |
0.406 (0.400, 0.413) |
-0.642 (-0.672, -0.616) |
0.01300 (0.01292, 0.01308) |
0.279 (0.277, 0.281) |
0.014 (0.002, 0.025) |
0.00187 (0.00184, 0.00189) |
0.423 (0.416, 0.431) |
-0.690 (-0.717, -0.663) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1 |
1 |
- |
- |
0.00980 (0.00968, 0.00993) |
0.342 (0.339, 0.344) |
-0.370 (-0.384, -0.354) |
0.00884 (0.00871, 0.00900) |
0.366 (0.363, 0.369) |
-0.500 (-0.517, -0.481) |
0.01102 (0.01091, 0.01111) |
0.323 (0.321, 0.326) |
-0.249 (-0.263, -0.236) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1 |
1 |
245.072 (238.879, 250.602) |
236.965 (231.323, 242.566) |
0.00813 (0.00803, 0.00822) |
0.328 (0.323, 0.332) |
-0.293 (-0.315, -0.267) |
0.00294 (0.00288, 0.00300) |
0.452 (0.444, 0.459) |
-0.876 (-0.906, -0.848) |
0.00874 (0.00867, 0.00880) |
0.313 (0.311, 0.316) |
-0.194 (-0.207, -0.182) |
0.00135 (0.00132, 0.00137) |
0.466 (0.459, 0.472) |
-0.908 (-0.940, -0.875) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1 |
1 |
321.877 (317.817, 325.354) |
334.650 (329.863, 339.370) |
0.01192 (0.01184, 0.01202) |
0.285 (0.281, 0.288) |
-0.025 (-0.039, -0.011) |
0.00402 (0.00396, 0.00408) |
0.402 (0.396, 0.407) |
-0.610 (-0.638, -0.579) |
0.01189 (0.01184, 0.01194) |
0.280 (0.278, 0.282) |
0.012 (0.001, 0.023) |
0.00174 (0.00172, 0.00176) |
0.428 (0.423, 0.434) |
-0.716 (-0.733, -0.695) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1 |
1 |
- |
- |
0.00968 (0.00959, 0.00979) |
0.346 (0.342, 0.350) |
-0.388 (-0.408, -0.368) |
0.00880 (0.00867, 0.00892) |
0.361 (0.356, 0.367) |
-0.470 (-0.491, -0.448) |
0.01080 (0.01072, 0.01088) |
0.327 (0.324, 0.330) |
-0.272 (-0.286, -0.259) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1.5 |
1 |
93.612 (90.973, 96.019) |
88.032 (86.026, 90.090) |
0.01013 (0.00992, 0.01035) |
0.336 (0.330, 0.342) |
-0.309 (-0.338, -0.277) |
0.00330 (0.00324, 0.00337) |
0.464 (0.452, 0.477) |
-0.938 (-0.985, -0.892) |
0.01131 (0.01117, 0.01145) |
0.306 (0.303, 0.309) |
-0.155 (-0.170, -0.140) |
0.00158 (0.00155, 0.00161) |
0.464 (0.456, 0.473) |
-0.913 (-0.948, -0.880) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1.5 |
1 |
127.185 (123.846, 130.472) |
129.822 (126.322, 133.282) |
0.01498 (0.01483, 0.01513) |
0.279 (0.272, 0.285) |
0.014 (-0.013, 0.039) |
0.00465 (0.00453, 0.00476) |
0.404 (0.398, 0.411) |
-0.620 (-0.647, -0.592) |
0.01474 (0.01465, 0.01483) |
0.277 (0.275, 0.280) |
0.022 (0.009, 0.034) |
0.00205 (0.00199, 0.00210) |
0.422 (0.414, 0.429) |
-0.693 (-0.735, -0.657) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1.5 |
1 |
- |
- |
0.01093 (0.01074, 0.01112) |
0.337 (0.333, 0.341) |
-0.339 (-0.360, -0.317) |
0.00955 (0.00936, 0.00974) |
0.361 (0.355, 0.366) |
-0.474 (-0.498, -0.451) |
0.01251 (0.01238, 0.01266) |
0.312 (0.309, 0.315) |
-0.192 (-0.206, -0.177) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2 |
1 |
98.325 (95.704, 101.137) |
92.763 (90.038, 95.540) |
0.01083 (0.01059, 0.01106) |
0.322 (0.314, 0.330) |
-0.236 (-0.275, -0.201) |
0.00347 (0.00338, 0.00354) |
0.453 (0.443, 0.463) |
-0.900 (-0.941, -0.857) |
0.01228 (0.01218, 0.01238) |
0.295 (0.292, 0.299) |
-0.099 (-0.120, -0.079) |
0.00164 (0.00161, 0.00167) |
0.462 (0.450, 0.474) |
-0.912 (-0.956, -0.863) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2 |
1 |
127.907 (124.754, 130.744) |
129.017 (126.121, 131.926) |
0.01527 (0.01505, 0.01551) |
0.283 (0.278, 0.287) |
0.002 (-0.029, 0.033) |
0.00467 (0.00459, 0.00474) |
0.408 (0.401, 0.416) |
-0.666 (-0.700, -0.627) |
0.01503 (0.01491, 0.01515) |
0.279 (0.277, 0.282) |
0.014 (-0.001, 0.030) |
0.00206 (0.00201, 0.00210) |
0.433 (0.422, 0.443) |
-0.715 (-0.765, -0.667) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2 |
1 |
- |
- |
0.01187 (0.01166, 0.01208) |
0.322 (0.317, 0.326) |
-0.261 (-0.284, -0.241) |
0.01011 (0.00991, 0.01031) |
0.347 (0.341, 0.353) |
-0.394 (-0.417, -0.369) |
0.01355 (0.01344, 0.01367) |
0.302 (0.299, 0.304) |
-0.130 (-0.142, -0.117) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2.5 |
1 |
98.897 (96.543, 101.487) |
95.230 (92.063, 98.387) |
0.01164 (0.01148, 0.01179) |
0.316 (0.311, 0.321) |
-0.196 (-0.225, -0.167) |
0.00354 (0.00345, 0.00362) |
0.465 (0.458, 0.472) |
-0.930 (-0.973, -0.886) |
0.01279 (0.01271, 0.01287) |
0.295 (0.293, 0.297) |
-0.081 (-0.093, -0.067) |
0.00165 (0.00160, 0.00169) |
0.463 (0.453, 0.474) |
-0.887 (-0.929, -0.838) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2.5 |
1 |
125.867 (123.366, 128.492) |
133.482 (130.185, 136.826) |
0.01543 (0.01525, 0.01564) |
0.283 (0.279, 0.287) |
-0.013 (-0.043, 0.015) |
0.00479 (0.00470, 0.00488) |
0.406 (0.398, 0.413) |
-0.633 (-0.669, -0.603) |
0.01518 (0.01511, 0.01526) |
0.280 (0.277, 0.282) |
0.010 (-0.003, 0.023) |
0.00205 (0.00202, 0.00208) |
0.420 (0.411, 0.430) |
-0.686 (-0.724, -0.651) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2.5 |
1 |
- |
- |
0.01241 (0.01226, 0.01257) |
0.318 (0.315, 0.320) |
-0.228 (-0.242, -0.214) |
0.01064 (0.01042, 0.01083) |
0.348 (0.340, 0.355) |
-0.405 (-0.437, -0.372) |
0.01412 (0.01399, 0.01425) |
0.298 (0.294, 0.303) |
-0.102 (-0.121, -0.084) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Autosome
with no gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
0.5 |
0 |
98.763 (96.065, 101.537) |
97.835 (94.291, 101.343) |
0.00981 (0.00956, 0.01006) |
0.359 (0.353, 0.364) |
-0.428 (-0.453, -0.404) |
0.00366 (0.00358, 0.00373) |
0.476 (0.466, 0.487) |
-0.994 (-1.040, -0.944) |
0.01037 (0.01020, 0.01053) |
0.342 (0.338, 0.345) |
-0.317 (-0.335, -0.297) |
0.00165 (0.00160, 0.00169) |
0.495 (0.487, 0.502) |
-1.055 (-1.095, -1.015) |
|
|
|
|
|
|
|
BGS |
70 |
A |
0.5 |
0 |
133.368 (130.207, 136.257) |
136.925 (133.265, 140.646) |
0.01448 (0.01423, 0.01472) |
0.306 (0.299, 0.312) |
-0.119 (-0.145, -0.088) |
0.00495 (0.00485, 0.00506) |
0.423 (0.415, 0.432) |
-0.744 (-0.789, -0.695) |
0.01455 (0.01442, 0.01470) |
0.296 (0.291, 0.300) |
-0.065 (-0.095, -0.038) |
0.00212 (0.00207, 0.00216) |
0.451 (0.442, 0.460) |
-0.821 (-0.861, -0.781) |
|
|
|
|
|
|
|
SSW |
70 |
A |
0.5 |
0 |
- |
- |
0.01178 (0.01144, 0.01206) |
0.372 (0.366, 0.377) |
-0.539 (-0.575, -0.503) |
0.01153 (0.01123, 0.01186) |
0.370 (0.361, 0.378) |
-0.539 (-0.581, -0.487) |
0.01277 (0.01253, 0.01301) |
0.353 (0.348, 0.359) |
-0.437 (-0.468, -0.404) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
0.5 |
0 |
185.093 (181.225, 188.900) |
190.990 (187.033, 195.210) |
0.00915 (0.00895, 0.00935) |
0.340 (0.335, 0.345) |
-0.352 (-0.383, -0.327) |
0.00352 (0.00345, 0.00360) |
0.456 (0.448, 0.464) |
-0.883 (-0.918, -0.849) |
0.00944 (0.00928, 0.00961) |
0.334 (0.327, 0.339) |
-0.300 (-0.324, -0.277) |
0.00155 (0.00151, 0.00158) |
0.484 (0.478, 0.492) |
-0.987 (-1.016, -0.957) |
|
|
|
|
|
|
|
BGS |
140 |
A |
0.5 |
0 |
241.400 (237.545, 245.538) |
250.127 (244.420, 255.947) |
0.01239 (0.01221, 0.01256) |
0.303 (0.298, 0.308) |
-0.111 (-0.145, -0.081) |
0.00449 (0.00440, 0.00457) |
0.423 (0.415, 0.430) |
-0.694 (-0.733, -0.654) |
0.01263 (0.01253, 0.01273) |
0.295 (0.292, 0.298) |
-0.061 (-0.077, -0.044) |
0.00196 (0.00193, 0.00199) |
0.444 (0.437, 0.452) |
-0.780 (-0.819, -0.746) |
|
|
|
|
|
|
|
SSW |
140 |
A |
0.5 |
0 |
- |
- |
0.01188 (0.01172, 0.01206) |
0.363 (0.360, 0.367) |
-0.496 (-0.517, -0.475) |
0.01164 (0.01145, 0.01184) |
0.369 (0.363, 0.374) |
-0.512 (-0.543, -0.481) |
0.01277 (0.01260, 0.01296) |
0.348 (0.344, 0.351) |
-0.414 (-0.436, -0.395) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
0.5 |
0 |
265.905 (261.878, 270.128) |
270.355 (265.621, 275.192) |
0.00834 (0.00821, 0.00846) |
0.336 (0.330, 0.342) |
-0.319 (-0.339, -0.298) |
0.00333 (0.00327, 0.00339) |
0.455 (0.446, 0.463) |
-0.888 (-0.925, -0.848) |
0.00869 (0.00856, 0.00880) |
0.326 (0.322, 0.331) |
-0.256 (-0.275, -0.239) |
0.00147 (0.00144, 0.00149) |
0.473 (0.468, 0.479) |
-0.941 (-0.963, -0.919) |
|
|
|
|
|
|
|
BGS |
210 |
A |
0.5 |
0 |
332.655 (327.634, 337.545) |
345.413 (339.973, 351.080) |
0.01111 (0.01099, 0.01121) |
0.301 (0.296, 0.305) |
-0.094 (-0.118, -0.071) |
0.00415 (0.00408, 0.00422) |
0.420 (0.413, 0.427) |
-0.688 (-0.722, -0.655) |
0.01117 (0.01110, 0.01124) |
0.294 (0.292, 0.297) |
-0.067 (-0.079, -0.053) |
0.00181 (0.00179, 0.00183) |
0.438 (0.431, 0.446) |
-0.743 (-0.768, -0.718) |
|
|
|
|
|
|
|
SSW |
210 |
A |
0.5 |
0 |
- |
- |
0.01182 (0.01166, 0.01199) |
0.364 (0.361, 0.368) |
-0.497 (-0.516, -0.480) |
0.01157 (0.01138, 0.01173) |
0.369 (0.365, 0.374) |
-0.508 (-0.528, -0.486) |
0.01264 (0.01249, 0.01279) |
0.352 (0.348, 0.354) |
-0.428 (-0.441, -0.415) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
1 |
0 |
122.060 (115.620, 127.589) |
118.665 (114.146, 123.335) |
0.01268 (0.01223, 0.01309) |
0.338 (0.329, 0.347) |
-0.325 (-0.365, -0.284) |
0.00444 (0.00429, 0.00457) |
0.447 (0.439, 0.458) |
-0.832 (-0.880, -0.788) |
0.01379 (0.01356, 0.01402) |
0.308 (0.304, 0.313) |
-0.155 (-0.172, -0.140) |
0.00200 (0.00191, 0.00208) |
0.472 (0.458, 0.484) |
-0.917 (-0.978, -0.857) |
|
|
|
|
|
|
|
BGS |
70 |
A |
1 |
0 |
146.580 (140.188, 153.331) |
146.180 (141.650, 150.675) |
0.01682 (0.01649, 0.01713) |
0.289 (0.278, 0.298) |
-0.054 (-0.098, -0.010) |
0.00535 (0.00521, 0.00550) |
0.415 (0.400, 0.429) |
-0.667 (-0.707, -0.624) |
0.01709 (0.01692, 0.01723) |
0.281 (0.276, 0.286) |
0.015 (-0.017, 0.045) |
0.00236 (0.00229, 0.00245) |
0.437 (0.428, 0.449) |
-0.738 (-0.770, -0.706) |
|
|
|
|
|
|
|
SSW |
70 |
A |
1 |
0 |
- |
- |
0.01496 (0.01461, 0.01531) |
0.333 (0.327, 0.338) |
-0.312 (-0.351, -0.277) |
0.01404 (0.01344, 0.01464) |
0.348 (0.343, 0.352) |
-0.360 (-0.398, -0.322) |
0.01664 (0.01630, 0.01694) |
0.314 (0.310, 0.317) |
-0.192 (-0.211, -0.168) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
1 |
0 |
227.130 (223.825, 230.985) |
223.465 (219.792, 227.435) |
0.01157 (0.01137, 0.01179) |
0.325 (0.319, 0.329) |
-0.266 (-0.297, -0.231) |
0.00418 (0.00410, 0.00425) |
0.451 (0.443, 0.459) |
-0.864 (-0.914, -0.814) |
0.01251 (0.01237, 0.01266) |
0.306 (0.303, 0.309) |
-0.141 (-0.157, -0.128) |
0.00186 (0.00183, 0.00188) |
0.462 (0.451, 0.474) |
-0.886 (-0.931, -0.843) |
|
|
|
|
|
|
|
BGS |
140 |
A |
1 |
0 |
275.195 (270.031, 280.215) |
282.285 (273.421, 292.204) |
0.01496 (0.01479, 0.01513) |
0.288 (0.285, 0.291) |
-0.042 (-0.060, -0.023) |
0.00511 (0.00501, 0.00522) |
0.416 (0.403, 0.428) |
-0.662 (-0.712, -0.613) |
0.01506 (0.01493, 0.01519) |
0.281 (0.278, 0.285) |
-0.004 (-0.018, 0.007) |
0.00226 (0.00221, 0.00230) |
0.430 (0.419, 0.440) |
-0.722 (-0.751, -0.690) |
|
|
|
|
|
|
|
SSW |
140 |
A |
1 |
0 |
- |
- |
0.01488 (0.01477, 0.01498) |
0.332 (0.327, 0.337) |
-0.317 (-0.343, -0.291) |
0.01396 (0.01372, 0.01422) |
0.351 (0.345, 0.357) |
-0.409 (-0.426, -0.392) |
0.01671 (0.01654, 0.01687) |
0.312 (0.308, 0.316) |
-0.195 (-0.216, -0.173) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
1 |
0 |
319.685 (312.680, 326.835) |
320.295 (312.708, 328.663) |
0.01079 (0.01065, 0.01095) |
0.318 (0.313, 0.322) |
-0.231 (-0.263, -0.200) |
0.00396 (0.00389, 0.00403) |
0.436 (0.427, 0.444) |
-0.807 (-0.839, -0.772) |
0.01155 (0.01140, 0.01171) |
0.304 (0.298, 0.309) |
-0.126 (-0.151, -0.101) |
0.00175 (0.00172, 0.00177) |
0.455 (0.447, 0.464) |
-0.872 (-0.913, -0.834) |
|
|
|
|
|
|
|
BGS |
210 |
A |
1 |
0 |
374.445 (364.046, 384.537) |
381.055 (376.397, 385.043) |
0.01330 (0.01310, 0.01347) |
0.292 (0.289, 0.295) |
-0.065 (-0.090, -0.040) |
0.00461 (0.00456, 0.00467) |
0.414 (0.407, 0.421) |
-0.677 (-0.699, -0.651) |
0.01344 (0.01337, 0.01352) |
0.284 (0.282, 0.286) |
-0.019 (-0.032, -0.005) |
0.00206 (0.00202, 0.00209) |
0.426 (0.420, 0.434) |
-0.721 (-0.759, -0.683) |
|
|
|
|
|
|
|
SSW |
210 |
A |
1 |
0 |
- |
- |
0.01504 (0.01480, 0.01529) |
0.328 (0.325, 0.331) |
-0.294 (-0.311, -0.279) |
0.01405 (0.01390, 0.01420) |
0.344 (0.340, 0.348) |
-0.356 (-0.375, -0.338) |
0.01649 (0.01633, 0.01665) |
0.312 (0.308, 0.316) |
-0.195 (-0.215, -0.174) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
1.5 |
0 |
130.843 (128.445, 133.012) |
125.933 (122.550, 128.917) |
0.01441 (0.01418, 0.01467) |
0.317 (0.312, 0.322) |
-0.221 (-0.251, -0.191) |
0.00475 (0.00464, 0.00484) |
0.445 (0.438, 0.452) |
-0.834 (-0.862, -0.804) |
0.01558 (0.01543, 0.01572) |
0.297 (0.295, 0.300) |
-0.101 (-0.115, -0.088) |
0.00217 (0.00213, 0.00220) |
0.449 (0.440, 0.459) |
-0.835 (-0.879, -0.796) |
|
|
|
|
|
|
|
BGS |
70 |
A |
1.5 |
0 |
154.895 (151.667, 158.391) |
158.507 (155.105, 162.000) |
0.01804 (0.01785, 0.01823) |
0.287 (0.282, 0.293) |
-0.015 (-0.046, 0.015) |
0.00576 (0.00566, 0.00586) |
0.417 (0.408, 0.425) |
-0.681 (-0.718, -0.644) |
0.01824 (0.01815, 0.01834) |
0.278 (0.276, 0.281) |
0.020 (0.004, 0.033) |
0.00252 (0.00247, 0.00257) |
0.431 (0.422, 0.438) |
-0.740 (-0.776, -0.705) |
|
|
|
|
|
|
|
SSW |
70 |
A |
1.5 |
0 |
- |
- |
0.01679 (0.01660, 0.01698) |
0.317 (0.314, 0.321) |
-0.233 (-0.250, -0.215) |
0.01532 (0.01506, 0.01558) |
0.332 (0.327, 0.337) |
-0.310 (-0.335, -0.287) |
0.01868 (0.01854, 0.01880) |
0.300 (0.298, 0.303) |
-0.122 (-0.135, -0.109) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
1.5 |
0 |
240.920 (236.095, 246.260) |
236.555 (231.143, 241.842) |
0.01313 (0.01294, 0.01331) |
0.315 (0.311, 0.318) |
-0.197 (-0.218, -0.178) |
0.00442 (0.00433, 0.00451) |
0.444 (0.437, 0.450) |
-0.832 (-0.861, -0.803) |
0.01418 (0.01406, 0.01429) |
0.295 (0.293, 0.297) |
-0.083 (-0.093, -0.073) |
0.00200 (0.00196, 0.00204) |
0.459 (0.451, 0.465) |
-0.864 (-0.895, -0.832) |
|
|
|
|
|
|
|
BGS |
140 |
A |
1.5 |
0 |
290.405 (284.779, 296.117) |
293.817 (290.657, 297.065) |
0.01601 (0.01584, 0.01618) |
0.287 (0.283, 0.290) |
-0.024 (-0.047, -0.003) |
0.00530 (0.00524, 0.00536) |
0.407 (0.402, 0.413) |
-0.645 (-0.669, -0.620) |
0.01607 (0.01596, 0.01618) |
0.278 (0.275, 0.281) |
0.021 (0.005, 0.036) |
0.00236 (0.00230, 0.00240) |
0.429 (0.423, 0.434) |
-0.707 (-0.732, -0.676) |
|
|
|
|
|
|
|
SSW |
140 |
A |
1.5 |
0 |
- |
- |
0.01659 (0.01642, 0.01674) |
0.317 (0.313, 0.321) |
-0.226 (-0.243, -0.210) |
0.01499 (0.01480, 0.01517) |
0.334 (0.330, 0.339) |
-0.330 (-0.354, -0.307) |
0.01852 (0.01840, 0.01865) |
0.299 (0.297, 0.301) |
-0.116 (-0.128, -0.104) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
1.5 |
0 |
347.842 (342.401, 353.199) |
342.535 (338.045, 347.107) |
0.01212 (0.01202, 0.01222) |
0.312 (0.309, 0.316) |
-0.165 (-0.185, -0.146) |
0.00421 (0.00417, 0.00426) |
0.435 (0.430, 0.441) |
-0.784 (-0.806, -0.764) |
0.01280 (0.01273, 0.01288) |
0.295 (0.293, 0.297) |
-0.076 (-0.086, -0.066) |
0.00191 (0.00189, 0.00193) |
0.446 (0.440, 0.451) |
-0.809 (-0.829, -0.788) |
|
|
|
|
|
|
|
BGS |
210 |
A |
1.5 |
0 |
396.620 (390.501, 402.854) |
412.885 (407.921, 418.081) |
0.01417 (0.01410, 0.01424) |
0.291 (0.287, 0.295) |
-0.041 (-0.059, -0.024) |
0.00496 (0.00491, 0.00502) |
0.407 (0.402, 0.411) |
-0.631 (-0.650, -0.611) |
0.01424 (0.01419, 0.01429) |
0.282 (0.279, 0.284) |
0.009 (-0.004, 0.020) |
0.00215 (0.00212, 0.00218) |
0.428 (0.423, 0.433) |
-0.715 (-0.742, -0.688) |
|
|
|
|
|
|
|
SSW |
210 |
A |
1.5 |
0 |
- |
- |
0.01653 (0.01639, 0.01667) |
0.319 (0.316, 0.322) |
-0.230 (-0.243, -0.218) |
0.01494 (0.01479, 0.01509) |
0.337 (0.334, 0.340) |
-0.337 (-0.354, -0.320) |
0.01850 (0.01842, 0.01858) |
0.299 (0.297, 0.301) |
-0.112 (-0.119, -0.105) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
2 |
0 |
141.170 (138.910, 143.065) |
131.333 (128.668, 134.397) |
0.01541 (0.01521, 0.01560) |
0.310 (0.305, 0.315) |
-0.175 (-0.202, -0.151) |
0.00487 (0.00476, 0.00498) |
0.441 (0.432, 0.451) |
-0.808 (-0.848, -0.768) |
0.01674 (0.01663, 0.01684) |
0.289 (0.287, 0.291) |
-0.056 (-0.064, -0.047) |
0.00232 (0.00229, 0.00236) |
0.449 (0.442, 0.457) |
-0.827 (-0.856, -0.796) |
|
|
|
|
|
|
|
BGS |
70 |
A |
2 |
0 |
160.315 (156.745, 164.232) |
166.405 (162.346, 169.797) |
0.01867 (0.01849, 0.01888) |
0.283 (0.278, 0.288) |
-0.003 (-0.031, 0.021) |
0.00603 (0.00592, 0.00614) |
0.405 (0.399, 0.411) |
-0.620 (-0.649, -0.591) |
0.01866 (0.01851, 0.01881) |
0.277 (0.274, 0.279) |
0.023 (0.009, 0.037) |
0.00264 (0.00259, 0.00269) |
0.429 (0.420, 0.437) |
-0.689 (-0.722, -0.655) |
|
|
|
|
|
|
|
SSW |
70 |
A |
2 |
0 |
- |
- |
0.01763 (0.01742, 0.01783) |
0.305 (0.299, 0.310) |
-0.155 (-0.179, -0.135) |
0.01568 (0.01548, 0.01588) |
0.322 (0.315, 0.330) |
-0.282 (-0.315, -0.251) |
0.01965 (0.01951, 0.01981) |
0.289 (0.285, 0.293) |
-0.058 (-0.076, -0.042) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
2 |
0 |
262.125 (257.945, 266.688) |
249.368 (243.416, 254.249) |
0.01420 (0.01403, 0.01436) |
0.305 (0.301, 0.309) |
-0.144 (-0.166, -0.123) |
0.00462 (0.00454, 0.00468) |
0.439 (0.433, 0.446) |
-0.811 (-0.850, -0.776) |
0.01502 (0.01494, 0.01511) |
0.289 (0.286, 0.292) |
-0.047 (-0.061, -0.034) |
0.00214 (0.00211, 0.00217) |
0.442 (0.433, 0.451) |
-0.804 (-0.831, -0.777) |
|
|
|
|
|
|
|
BGS |
140 |
A |
2 |
0 |
293.350 (288.474, 298.337) |
310.920 (306.460, 315.510) |
0.01651 (0.01638, 0.01665) |
0.287 (0.284, 0.291) |
-0.034 (-0.053, -0.014) |
0.00555 (0.00548, 0.00562) |
0.402 (0.396, 0.408) |
-0.594 (-0.635, -0.560) |
0.01651 (0.01643, 0.01659) |
0.280 (0.278, 0.281) |
0.013 (0.003, 0.023) |
0.00238 (0.00235, 0.00242) |
0.424 (0.419, 0.429) |
-0.710 (-0.742, -0.685) |
|
|
|
|
|
|
|
SSW |
140 |
A |
2 |
0 |
- |
- |
0.01781 (0.01766, 0.01798) |
0.303 (0.300, 0.306) |
-0.153 (-0.166, -0.142) |
0.01571 (0.01549, 0.01592) |
0.325 (0.321, 0.329) |
-0.286 (-0.308, -0.265) |
0.01971 (0.01961, 0.01981) |
0.288 (0.286, 0.290) |
-0.054 (-0.068, -0.040) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
2 |
0 |
367.975 (363.418, 372.557) |
354.248 (349.563, 359.171) |
0.01278 (0.01266, 0.01289) |
0.304 (0.300, 0.308) |
-0.125 (-0.141, -0.110) |
0.00434 (0.00429, 0.00439) |
0.429 (0.423, 0.435) |
-0.772 (-0.795, -0.748) |
0.01351 (0.01345, 0.01358) |
0.289 (0.287, 0.290) |
-0.050 (-0.060, -0.039) |
0.00201 (0.00198, 0.00203) |
0.441 (0.436, 0.447) |
-0.786 (-0.809, -0.764) |
|
|
|
|
|
|
|
BGS |
210 |
A |
2 |
0 |
409.218 (404.175, 413.930) |
418.642 (412.119, 424.782) |
0.01466 (0.01457, 0.01476) |
0.285 (0.282, 0.288) |
-0.029 (-0.045, -0.014) |
0.00506 (0.00500, 0.00513) |
0.408 (0.403, 0.412) |
-0.627 (-0.646, -0.605) |
0.01471 (0.01466, 0.01476) |
0.282 (0.280, 0.283) |
0.001 (-0.008, 0.011) |
0.00222 (0.00219, 0.00224) |
0.426 (0.422, 0.429) |
-0.703 (-0.719, -0.687) |
|
|
|
|
|
|
|
SSW |
210 |
A |
2 |
0 |
- |
- |
0.01757 (0.01746, 0.01766) |
0.308 (0.305, 0.310) |
-0.174 (-0.183, -0.165) |
0.01568 (0.01551, 0.01584) |
0.327 (0.324, 0.330) |
-0.297 (-0.313, -0.280) |
0.01960 (0.01952, 0.01968) |
0.290 (0.288, 0.292) |
-0.060 (-0.071, -0.050) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
2.5 |
0 |
142.248 (138.623, 145.914) |
131.585 (127.886, 135.205) |
0.01632 (0.01612, 0.01652) |
0.302 (0.295, 0.308) |
-0.122 (-0.151, -0.092) |
0.00493 (0.00482, 0.00505) |
0.448 (0.438, 0.458) |
-0.880 (-0.927, -0.835) |
0.01746 (0.01733, 0.01758) |
0.286 (0.283, 0.288) |
-0.031 (-0.048, -0.015) |
0.00236 (0.00232, 0.00241) |
0.443 (0.436, 0.451) |
-0.803 (-0.836, -0.773) |
|
|
|
|
|
|
|
BGS |
70 |
A |
2.5 |
0 |
164.097 (161.265, 167.119) |
173.755 (169.519, 177.997) |
0.01896 (0.01881, 0.01913) |
0.286 (0.280, 0.291) |
-0.029 (-0.059, 0.003) |
0.00622 (0.00610, 0.00634) |
0.406 (0.399, 0.414) |
-0.609 (-0.638, -0.578) |
0.01904 (0.01894, 0.01914) |
0.276 (0.273, 0.278) |
0.024 (0.012, 0.037) |
0.00266 (0.00263, 0.00270) |
0.422 (0.415, 0.429) |
-0.690 (-0.714, -0.665) |
|
|
|
|
|
|
|
SSW |
70 |
A |
2.5 |
0 |
- |
- |
0.01871 (0.01853, 0.01892) |
0.298 (0.295, 0.301) |
-0.112 (-0.126, -0.097) |
0.01639 (0.01613, 0.01664) |
0.321 (0.314, 0.327) |
-0.253 (-0.274, -0.233) |
0.02050 (0.02035, 0.02064) |
0.283 (0.281, 0.285) |
-0.025 (-0.036, -0.014) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
2.5 |
0 |
266.637 (261.363, 272.248) |
257.913 (253.098, 262.825) |
0.01473 (0.01456, 0.01489) |
0.301 (0.297, 0.304) |
-0.123 (-0.146, -0.102) |
0.00476 (0.00469, 0.00483) |
0.435 (0.427, 0.443) |
-0.792 (-0.828, -0.754) |
0.01571 (0.01563, 0.01580) |
0.285 (0.283, 0.287) |
-0.026 (-0.037, -0.015) |
0.00218 (0.00216, 0.00221) |
0.441 (0.433, 0.451) |
-0.776 (-0.814, -0.732) |
|
|
|
|
|
|
|
BGS |
140 |
A |
2.5 |
0 |
299.325 (295.210, 303.615) |
313.757 (306.475, 320.615) |
0.01670 (0.01653, 0.01686) |
0.286 (0.283, 0.289) |
-0.026 (-0.046, -0.003) |
0.00563 (0.00553, 0.00573) |
0.409 (0.399, 0.417) |
-0.625 (-0.662, -0.586) |
0.01689 (0.01683, 0.01694) |
0.278 (0.276, 0.279) |
0.020 (0.010, 0.030) |
0.00244 (0.00241, 0.00247) |
0.424 (0.418, 0.429) |
-0.683 (-0.708, -0.658) |
|
|
|
|
|
|
|
SSW |
140 |
A |
2.5 |
0 |
- |
- |
0.01834 (0.01823, 0.01846) |
0.302 (0.300, 0.304) |
-0.137 (-0.147, -0.124) |
0.01600 (0.01573, 0.01627) |
0.327 (0.323, 0.331) |
-0.298 (-0.312, -0.280) |
0.02024 (0.02011, 0.02037) |
0.286 (0.284, 0.288) |
-0.036 (-0.046, -0.026) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
2.5 |
0 |
374.360 (369.564, 379.862) |
366.527 (361.047, 372.297) |
0.01345 (0.01336, 0.01356) |
0.298 (0.295, 0.300) |
-0.102 (-0.116, -0.089) |
0.00452 (0.00447, 0.00456) |
0.427 (0.422, 0.431) |
-0.742 (-0.760, -0.724) |
0.01404 (0.01399, 0.01410) |
0.287 (0.286, 0.289) |
-0.034 (-0.042, -0.026) |
0.00205 (0.00202, 0.00207) |
0.441 (0.436, 0.446) |
-0.763 (-0.784, -0.741) |
|
|
|
|
|
|
|
BGS |
210 |
A |
2.5 |
0 |
409.265 (401.821, 417.423) |
425.863 (418.178, 432.232) |
0.01493 (0.01484, 0.01502) |
0.287 (0.284, 0.290) |
-0.031 (-0.044, -0.019) |
0.00512 (0.00505, 0.00519) |
0.405 (0.401, 0.410) |
-0.622 (-0.647, -0.600) |
0.01499 (0.01495, 0.01504) |
0.279 (0.278, 0.280) |
0.018 (0.010, 0.024) |
0.00221 (0.00218, 0.00224) |
0.425 (0.421, 0.430) |
-0.697 (-0.723, -0.674) |
|
|
|
|
|
|
|
SSW |
210 |
A |
2.5 |
0 |
- |
- |
0.01838 (0.01828, 0.01847) |
0.301 (0.299, 0.304) |
-0.132 (-0.144, -0.119) |
0.01623 (0.01606, 0.01639) |
0.322 (0.319, 0.325) |
-0.265 (-0.284, -0.247) |
0.02026 (0.02018, 0.02033) |
0.286 (0.284, 0.287) |
-0.035 (-0.044, -0.027) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection and no gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0.5 |
0 |
66.700 (63.843, 69.523) |
66.698 (64.373, 69.097) |
0.00665 (0.00645, 0.00686) |
0.377 (0.368, 0.386) |
-0.551 (-0.592, -0.508) |
0.00253 (0.00245, 0.00261) |
0.497 (0.485, 0.508) |
-1.110 (-1.153, -1.066) |
0.00688 (0.00669, 0.00707) |
0.369 (0.364, 0.374) |
-0.491 (-0.516, -0.464) |
0.00114 (0.00110, 0.00118) |
0.515 (0.503, 0.527) |
-1.146 (-1.188, -1.096) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0.5 |
0 |
105.793 (103.676, 107.672) |
110.683 (107.938, 113.507) |
0.01213 (0.01200, 0.01226) |
0.298 (0.293, 0.304) |
-0.074 (-0.106, -0.040) |
0.00401 (0.00393, 0.00409) |
0.418 (0.408, 0.428) |
-0.696 (-0.729, -0.663) |
0.01225 (0.01213, 0.01238) |
0.290 (0.286, 0.294) |
-0.038 (-0.059, -0.012) |
0.00176 (0.00172, 0.00179) |
0.444 (0.436, 0.452) |
-0.776 (-0.815, -0.736) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0.5 |
0 |
- |
- |
0.00723 (0.00703, 0.00745) |
0.393 (0.386, 0.401) |
-0.669 (-0.704, -0.635) |
0.00715 (0.00696, 0.00737) |
0.395 (0.386, 0.403) |
-0.634 (-0.672, -0.595) |
0.00768 (0.00747, 0.00788) |
0.382 (0.375, 0.388) |
-0.598 (-0.626, -0.570) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0.5 |
0 |
132.500 (128.448, 135.848) |
135.833 (131.850, 139.494) |
0.00645 (0.00631, 0.00659) |
0.372 (0.366, 0.378) |
-0.492 (-0.534, -0.450) |
0.00254 (0.00248, 0.00260) |
0.477 (0.468, 0.487) |
-0.987 (-1.029, -0.944) |
0.00674 (0.00658, 0.00690) |
0.355 (0.350, 0.360) |
-0.422 (-0.450, -0.397) |
0.00112 (0.00109, 0.00114) |
0.506 (0.496, 0.516) |
-1.094 (-1.133, -1.055) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0.5 |
0 |
201.515 (196.663, 206.224) |
208.047 (204.321, 211.679) |
0.01087 (0.01074, 0.01099) |
0.296 (0.290, 0.301) |
-0.066 (-0.102, -0.028) |
0.00375 (0.00370, 0.00381) |
0.420 (0.413, 0.427) |
-0.687 (-0.723, -0.649) |
0.01099 (0.01091, 0.01107) |
0.291 (0.288, 0.294) |
-0.044 (-0.059, -0.028) |
0.00162 (0.00159, 0.00165) |
0.436 (0.431, 0.441) |
-0.748 (-0.774, -0.720) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0.5 |
0 |
- |
- |
0.00730 (0.00711, 0.00747) |
0.397 (0.390, 0.405) |
-0.656 (-0.693, -0.620) |
0.00713 (0.00693, 0.00731) |
0.406 (0.396, 0.415) |
-0.687 (-0.731, -0.644) |
0.00776 (0.00756, 0.00794) |
0.380 (0.374, 0.386) |
-0.582 (-0.611, -0.557) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0.5 |
0 |
193.600 (189.652, 197.459) |
199.190 (196.065, 202.562) |
0.00618 (0.00606, 0.00629) |
0.356 (0.349, 0.364) |
-0.430 (-0.467, -0.397) |
0.00247 (0.00243, 0.00251) |
0.470 (0.460, 0.480) |
-0.949 (-0.986, -0.914) |
0.00637 (0.00630, 0.00646) |
0.350 (0.345, 0.354) |
-0.395 (-0.415, -0.374) |
0.00108 (0.00106, 0.00110) |
0.485 (0.479, 0.492) |
-1.018 (-1.049, -0.985) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0.5 |
0 |
275.978 (270.481, 281.437) |
295.892 (290.574, 300.657) |
0.00989 (0.00977, 0.01001) |
0.297 (0.293, 0.300) |
-0.090 (-0.107, -0.072) |
0.00357 (0.00353, 0.00362) |
0.409 (0.404, 0.415) |
-0.648 (-0.675, -0.617) |
0.01001 (0.00996, 0.01006) |
0.291 (0.288, 0.295) |
-0.057 (-0.073, -0.042) |
0.00151 (0.00149, 0.00154) |
0.438 (0.431, 0.445) |
-0.764 (-0.796, -0.727) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0.5 |
0 |
- |
- |
0.00738 (0.00726, 0.00749) |
0.391 (0.387, 0.396) |
-0.640 (-0.661, -0.620) |
0.00732 (0.00719, 0.00744) |
0.393 (0.388, 0.399) |
-0.642 (-0.669, -0.617) |
0.00787 (0.00776, 0.00798) |
0.380 (0.375, 0.385) |
-0.570 (-0.595, -0.548) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1 |
0 |
88.760 (85.170, 91.959) |
78.085 (74.413, 81.269) |
0.00889 (0.00859, 0.00914) |
0.350 (0.338, 0.362) |
-0.388 (-0.442, -0.327) |
0.00295 (0.00284, 0.00305) |
0.473 (0.454, 0.490) |
-0.995 (-1.067, -0.923) |
0.00971 (0.00955, 0.00986) |
0.326 (0.322, 0.331) |
-0.272 (-0.298, -0.249) |
0.00143 (0.00139, 0.00148) |
0.470 (0.460, 0.479) |
-0.922 (-0.983, -0.872) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1 |
0 |
117.255 (112.550, 121.945) |
125.650 (120.045, 131.734) |
0.01398 (0.01374, 0.01425) |
0.283 (0.277, 0.289) |
0.010 (-0.015, 0.035) |
0.00451 (0.00437, 0.00467) |
0.402 (0.396, 0.410) |
-0.613 (-0.674, -0.548) |
0.01418 (0.01403, 0.01431) |
0.278 (0.271, 0.284) |
0.018 (-0.017, 0.048) |
0.00192 (0.00186, 0.00198) |
0.430 (0.417, 0.442) |
-0.701 (-0.739, -0.659) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1 |
0 |
- |
- |
0.00992 (0.00959, 0.01029) |
0.350 (0.342, 0.360) |
-0.403 (-0.453, -0.350) |
0.00937 (0.00901, 0.00970) |
0.360 (0.355, 0.365) |
-0.462 (-0.506, -0.419) |
0.01102 (0.01079, 0.01129) |
0.329 (0.321, 0.337) |
-0.307 (-0.349, -0.268) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
1 |
0 |
162.000 (157.751, 166.473) |
159.295 (154.087, 164.544) |
0.00837 (0.00819, 0.00855) |
0.346 (0.340, 0.352) |
-0.372 (-0.400, -0.338) |
0.00300 (0.00290, 0.00309) |
0.462 (0.446, 0.478) |
-0.923 (-0.986, -0.859) |
0.00906 (0.00888, 0.00921) |
0.325 (0.321, 0.329) |
-0.267 (-0.292, -0.242) |
0.00133 (0.00132, 0.00135) |
0.481 (0.474, 0.489) |
-1.004 (-1.031, -0.983) |
|
|
|
|
|
|
|
BGS |
140 |
X |
1 |
0 |
223.035 (217.500, 229.464) |
229.335 (226.442, 232.550) |
0.01239 (0.01225, 0.01254) |
0.288 (0.284, 0.292) |
-0.037 (-0.055, -0.022) |
0.00418 (0.00412, 0.00424) |
0.410 (0.399, 0.422) |
-0.648 (-0.694, -0.605) |
0.01264 (0.01258, 0.01272) |
0.282 (0.276, 0.287) |
0.000 (-0.033, 0.029) |
0.00180 (0.00176, 0.00184) |
0.431 (0.420, 0.442) |
-0.738 (-0.792, -0.684) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1 |
0 |
- |
- |
0.00977 (0.00956, 0.00994) |
0.354 (0.351, 0.357) |
-0.439 (-0.462, -0.412) |
0.00930 (0.00917, 0.00943) |
0.366 (0.358, 0.372) |
-0.507 (-0.534, -0.481) |
0.01084 (0.01067, 0.01099) |
0.335 (0.331, 0.340) |
-0.334 (-0.352, -0.317) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1 |
0 |
235.740 (229.719, 241.288) |
239.945 (230.202, 248.851) |
0.00801 (0.00782, 0.00824) |
0.341 (0.334, 0.348) |
-0.345 (-0.376, -0.314) |
0.00296 (0.00287, 0.00305) |
0.459 (0.451, 0.469) |
-0.911 (-0.951, -0.873) |
0.00864 (0.00851, 0.00876) |
0.322 (0.320, 0.325) |
-0.243 (-0.257, -0.229) |
0.00131 (0.00128, 0.00134) |
0.474 (0.466, 0.483) |
-0.950 (-0.980, -0.918) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1 |
0 |
315.055 (302.972, 327.744) |
329.470 (321.697, 337.523) |
0.01150 (0.01139, 0.01160) |
0.287 (0.280, 0.294) |
-0.039 (-0.069, -0.008) |
0.00392 (0.00385, 0.00399) |
0.404 (0.398, 0.410) |
-0.625 (-0.653, -0.600) |
0.01159 (0.01151, 0.01166) |
0.280 (0.276, 0.284) |
0.007 (-0.015, 0.032) |
0.00172 (0.00168, 0.00176) |
0.424 (0.415, 0.432) |
-0.682 (-0.722, -0.644) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1 |
0 |
- |
- |
0.00973 (0.00963, 0.00983) |
0.352 (0.350, 0.354) |
-0.437 (-0.449, -0.424) |
0.00923 (0.00911, 0.00937) |
0.363 (0.359, 0.367) |
-0.498 (-0.512, -0.481) |
0.01083 (0.01071, 0.01096) |
0.334 (0.332, 0.336) |
-0.319 (-0.327, -0.310) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1.5 |
0 |
96.755 (93.706, 99.544) |
87.690 (85.450, 89.809) |
0.01035 (0.01016, 0.01054) |
0.332 (0.325, 0.339) |
-0.302 (-0.344, -0.265) |
0.00334 (0.00328, 0.00340) |
0.467 (0.457, 0.476) |
-0.943 (-0.980, -0.903) |
0.01127 (0.01117, 0.01137) |
0.314 (0.311, 0.316) |
-0.194 (-0.209, -0.178) |
0.00159 (0.00154, 0.00163) |
0.465 (0.454, 0.475) |
-0.917 (-0.977, -0.864) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1.5 |
0 |
121.085 (117.906, 124.211) |
130.115 (126.225, 133.389) |
0.01453 (0.01437, 0.01468) |
0.286 (0.280, 0.291) |
-0.016 (-0.038, 0.004) |
0.00469 (0.00461, 0.00477) |
0.403 (0.395, 0.410) |
-0.621 (-0.660, -0.581) |
0.01464 (0.01450, 0.01479) |
0.277 (0.274, 0.281) |
0.023 (0.004, 0.044) |
0.00199 (0.00194, 0.00203) |
0.427 (0.420, 0.435) |
-0.713 (-0.745, -0.678) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1.5 |
0 |
- |
- |
0.01125 (0.01110, 0.01140) |
0.337 (0.334, 0.340) |
-0.352 (-0.371, -0.334) |
0.01032 (0.01015, 0.01051) |
0.352 (0.347, 0.358) |
-0.423 (-0.457, -0.391) |
0.01275 (0.01258, 0.01289) |
0.313 (0.311, 0.316) |
-0.209 (-0.222, -0.196) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
1.5 |
0 |
180.690 (175.510, 185.808) |
174.530 (170.140, 178.654) |
0.00973 (0.00961, 0.00985) |
0.322 (0.319, 0.326) |
-0.265 (-0.287, -0.245) |
0.00328 (0.00321, 0.00334) |
0.449 (0.439, 0.458) |
-0.887 (-0.927, -0.847) |
0.01065 (0.01058, 0.01071) |
0.307 (0.305, 0.309) |
-0.155 (-0.167, -0.144) |
0.00150 (0.00147, 0.00153) |
0.460 (0.453, 0.468) |
-0.889 (-0.918, -0.859) |
|
|
|
|
|
|
|
BGS |
140 |
X |
1.5 |
0 |
231.453 (228.323, 234.555) |
239.678 (235.765, 243.267) |
0.01324 (0.01315, 0.01334) |
0.288 (0.284, 0.291) |
-0.023 (-0.044, -0.003) |
0.00431 (0.00425, 0.00436) |
0.412 (0.404, 0.418) |
-0.654 (-0.685, -0.622) |
0.01332 (0.01327, 0.01337) |
0.280 (0.278, 0.282) |
0.008 (-0.002, 0.018) |
0.00188 (0.00186, 0.00190) |
0.430 (0.425, 0.436) |
-0.709 (-0.738, -0.682) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1.5 |
0 |
- |
- |
0.01114 (0.01098, 0.01126) |
0.334 (0.330, 0.338) |
-0.330 (-0.350, -0.312) |
0.01027 (0.01008, 0.01045) |
0.353 (0.346, 0.358) |
-0.425 (-0.452, -0.395) |
0.01267 (0.01255, 0.01278) |
0.312 (0.310, 0.314) |
-0.196 (-0.207, -0.186) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1.5 |
0 |
264.767 (259.623, 269.805) |
255.798 (251.025, 260.415) |
0.00918 (0.00910, 0.00926) |
0.321 (0.316, 0.326) |
-0.240 (-0.269, -0.213) |
0.00318 (0.00313, 0.00323) |
0.447 (0.439, 0.456) |
-0.858 (-0.890, -0.822) |
0.00994 (0.00989, 0.01000) |
0.304 (0.301, 0.307) |
-0.140 (-0.154, -0.126) |
0.00145 (0.00143, 0.00147) |
0.458 (0.452, 0.464) |
-0.886 (-0.914, -0.856) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1.5 |
0 |
322.680 (318.516, 326.545) |
336.805 (330.661, 342.815) |
0.01202 (0.01193, 0.01211) |
0.286 (0.284, 0.289) |
-0.022 (-0.038, -0.005) |
0.00406 (0.00400, 0.00412) |
0.406 (0.401, 0.410) |
-0.630 (-0.659, -0.603) |
0.01219 (0.01214, 0.01224) |
0.279 (0.277, 0.281) |
0.018 (0.006, 0.029) |
0.00175 (0.00172, 0.00177) |
0.424 (0.418, 0.431) |
-0.698 (-0.718, -0.676) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1.5 |
0 |
- |
- |
0.01102 (0.01095, 0.01111) |
0.336 (0.333, 0.340) |
-0.345 (-0.360, -0.330) |
0.01026 (0.01014, 0.01037) |
0.353 (0.349, 0.357) |
-0.424 (-0.443, -0.406) |
0.01259 (0.01252, 0.01267) |
0.314 (0.311, 0.316) |
-0.202 (-0.215, -0.190) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70g |
X |
2 |
0 |
101.840 (99.283, 104.195) |
92.110 (89.213, 94.745) |
0.01123 (0.01101, 0.01142) |
0.320 (0.313, 0.326) |
-0.241 (-0.281, -0.200) |
0.00350 (0.00340, 0.00359) |
0.465 (0.452, 0.478) |
-0.943 (-0.989, -0.894) |
0.01244 (0.01236, 0.01254) |
0.301 (0.298, 0.305) |
-0.118 (-0.137, -0.099) |
0.00169 (0.00165, 0.00174) |
0.465 (0.456, 0.474) |
-0.898 (-0.927, -0.866) |
|
|
|
|
|
|
|
BGS |
70g |
X |
2 |
0 |
127.865 (124.533, 131.012) |
129.075 (125.370, 132.632) |
0.01489 (0.01466, 0.01511) |
0.281 (0.277, 0.286) |
-0.006 (-0.030, 0.018) |
0.00465 (0.00457, 0.00474) |
0.408 (0.399, 0.418) |
-0.659 (-0.696, -0.623) |
0.01496 (0.01484, 0.01507) |
0.279 (0.277, 0.281) |
0.026 (0.010, 0.042) |
0.00206 (0.00203, 0.00210) |
0.424 (0.413, 0.435) |
-0.690 (-0.729, -0.658) |
|
|
|
|
|
|
|
SSW |
70g |
X |
2 |
0 |
- |
- |
0.01213 (0.01194, 0.01234) |
0.326 (0.323, 0.329) |
-0.285 (-0.300, -0.269) |
0.01100 (0.01077, 0.01123) |
0.347 (0.342, 0.353) |
-0.388 (-0.420, -0.356) |
0.01377 (0.01363, 0.01393) |
0.301 (0.298, 0.305) |
-0.133 (-0.150, -0.114) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140g |
X |
2 |
0 |
189.673 (186.620, 192.790) |
183.705 (179.826, 187.427) |
0.01042 (0.01031, 0.01052) |
0.319 (0.314, 0.324) |
-0.228 (-0.249, -0.206) |
0.00341 (0.00336, 0.00346) |
0.446 (0.439, 0.455) |
-0.853 (-0.886, -0.824) |
0.01146 (0.01141, 0.01151) |
0.297 (0.294, 0.301) |
-0.103 (-0.118, -0.089) |
0.00156 (0.00154, 0.00158) |
0.460 (0.450, 0.470) |
-0.867 (-0.918, -0.823) |
|
|
|
|
|
|
|
BGS |
140g |
X |
2 |
0 |
232.800 (227.358, 238.343) |
246.088 (241.843, 249.689) |
0.01365 (0.01352, 0.01377) |
0.283 (0.280, 0.286) |
-0.006 (-0.027, 0.012) |
0.00437 (0.00431, 0.00444) |
0.405 (0.397, 0.415) |
-0.652 (-0.686, -0.623) |
0.01356 (0.01348, 0.01363) |
0.279 (0.277, 0.281) |
0.014 (0.001, 0.025) |
0.00190 (0.00188, 0.00193) |
0.426 (0.418, 0.436) |
-0.705 (-0.738, -0.673) |
|
|
|
|
|
|
|
SSW |
140g |
X |
2 |
0 |
- |
- |
0.01208 (0.01196, 0.01219) |
0.322 (0.319, 0.325) |
-0.267 (-0.287, -0.248) |
0.01084 (0.01068, 0.01098) |
0.341 (0.336, 0.345) |
-0.374 (-0.397, -0.351) |
0.01376 (0.01365, 0.01388) |
0.301 (0.299, 0.303) |
-0.134 (-0.145, -0.121) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210g |
X |
2 |
0 |
275.170 (270.152, 280.044) |
268.540 (264.830, 272.049) |
0.01001 (0.00994, 0.01008) |
0.312 (0.309, 0.316) |
-0.192 (-0.209, -0.176) |
0.00332 (0.00328, 0.00336) |
0.445 (0.439, 0.451) |
-0.847 (-0.875, -0.817) |
0.01079 (0.01074, 0.01083) |
0.297 (0.296, 0.298) |
-0.088 (-0.097, -0.081) |
0.00152 (0.00150, 0.00154) |
0.447 (0.442, 0.452) |
-0.828 (-0.848, -0.809) |
|
|
|
|
|
|
|
BGS |
210g |
X |
2 |
0 |
333.877 (329.296, 338.550) |
341.647 (336.369, 345.982) |
0.01245 (0.01235, 0.01254) |
0.287 (0.283, 0.291) |
-0.024 (-0.047, -0.004) |
0.00410 (0.00405, 0.00414) |
0.409 (0.403, 0.415) |
-0.650 (-0.674, -0.627) |
0.01244 (0.01240, 0.01248) |
0.281 (0.279, 0.283) |
0.011 (0.002, 0.019) |
0.00181 (0.00179, 0.00182) |
0.428 (0.423, 0.433) |
-0.711 (-0.733, -0.689) |
|
|
|
|
|
|
|
SSW |
210g |
X |
2 |
0 |
- |
- |
0.01214 (0.01204, 0.01225) |
0.324 (0.322, 0.326) |
-0.269 (-0.280, -0.258) |
0.01091 (0.01076, 0.01105) |
0.344 (0.339, 0.348) |
-0.378 (-0.399, -0.358) |
0.01374 (0.01365, 0.01381) |
0.303 (0.301, 0.304) |
-0.130 (-0.137, -0.124) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2.5 |
0 |
105.517 (102.564, 108.522) |
98.590 (95.653, 101.487) |
0.01185 (0.01161, 0.01206) |
0.322 (0.316, 0.328) |
-0.225 (-0.252, -0.194) |
0.00370 (0.00359, 0.00380) |
0.449 (0.442, 0.456) |
-0.854 (-0.888, -0.823) |
0.01311 (0.01299, 0.01323) |
0.292 (0.289, 0.294) |
-0.065 (-0.079, -0.052) |
0.00173 (0.00170, 0.00176) |
0.452 (0.441, 0.463) |
-0.843 (-0.880, -0.807) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2.5 |
0 |
126.368 (122.048, 130.774) |
132.942 (129.611, 136.752) |
0.01508 (0.01486, 0.01531) |
0.279 (0.275, 0.283) |
0.008 (-0.018, 0.034) |
0.00476 (0.00467, 0.00485) |
0.402 (0.395, 0.408) |
-0.615 (-0.651, -0.583) |
0.01515 (0.01504, 0.01526) |
0.277 (0.274, 0.279) |
0.032 (0.022, 0.042) |
0.00205 (0.00201, 0.00210) |
0.426 (0.416, 0.438) |
-0.686 (-0.746, -0.636) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2.5 |
0 |
- |
- |
0.01277 (0.01265, 0.01289) |
0.318 (0.315, 0.321) |
-0.244 (-0.260, -0.226) |
0.01131 (0.01105, 0.01154) |
0.341 (0.335, 0.347) |
-0.357 (-0.388, -0.326) |
0.01455 (0.01443, 0.01468) |
0.298 (0.295, 0.301) |
-0.109 (-0.122, -0.094) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
2.5 |
0 |
197.990 (194.436, 200.962) |
190.610 (186.468, 194.394) |
0.01110 (0.01096, 0.01122) |
0.313 (0.310, 0.316) |
-0.191 (-0.209, -0.173) |
0.00354 (0.00347, 0.00362) |
0.450 (0.443, 0.457) |
-0.877 (-0.904, -0.847) |
0.01208 (0.01200, 0.01216) |
0.293 (0.291, 0.295) |
-0.073 (-0.084, -0.061) |
0.00164 (0.00161, 0.00166) |
0.449 (0.443, 0.454) |
-0.836 (-0.859, -0.814) |
|
|
|
|
|
|
|
BGS |
140 |
X |
2.5 |
0 |
236.773 (232.081, 241.752) |
248.010 (243.064, 252.895) |
0.01386 (0.01367, 0.01404) |
0.285 (0.282, 0.289) |
-0.017 (-0.036, 0.003) |
0.00448 (0.00441, 0.00455) |
0.404 (0.397, 0.410) |
-0.620 (-0.645, -0.597) |
0.01379 (0.01372, 0.01386) |
0.279 (0.277, 0.281) |
0.016 (0.007, 0.026) |
0.00192 (0.00189, 0.00195) |
0.423 (0.413, 0.431) |
-0.682 (-0.719, -0.646) |
|
|
|
|
|
|
|
SSW |
140 |
X |
2.5 |
0 |
- |
- |
0.01279 (0.01263, 0.01294) |
0.318 (0.315, 0.321) |
-0.227 (-0.241, -0.212) |
0.01117 (0.01102, 0.01132) |
0.339 (0.333, 0.344) |
-0.359 (-0.384, -0.335) |
0.01436 (0.01427, 0.01445) |
0.298 (0.295, 0.301) |
-0.105 (-0.115, -0.093) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
2.5 |
0 |
285.522 (280.034, 290.302) |
277.960 (273.105, 283.591) |
0.01032 (0.01018, 0.01045) |
0.309 (0.305, 0.314) |
-0.165 (-0.186, -0.142) |
0.00343 (0.00338, 0.00347) |
0.435 (0.427, 0.444) |
-0.808 (-0.840, -0.774) |
0.01117 (0.01112, 0.01121) |
0.292 (0.289, 0.295) |
-0.067 (-0.077, -0.056) |
0.00157 (0.00155, 0.00159) |
0.450 (0.445, 0.457) |
-0.841 (-0.872, -0.812) |
|
|
|
|
|
|
|
BGS |
210 |
X |
2.5 |
0 |
334.555 (328.911, 340.055) |
351.007 (345.678, 356.206) |
0.01259 (0.01249, 0.01270) |
0.285 (0.281, 0.288) |
-0.017 (-0.035, 0.002) |
0.00419 (0.00414, 0.00424) |
0.407 (0.401, 0.412) |
-0.612 (-0.641, -0.582) |
0.01268 (0.01262, 0.01274) |
0.276 (0.274, 0.278) |
0.030 (0.023, 0.036) |
0.00180 (0.00178, 0.00182) |
0.421 (0.417, 0.426) |
-0.686 (-0.708, -0.668) |
|
|
|
|
|
|
|
SSW |
210 |
X |
2.5 |
0 |
- |
- |
0.01278 (0.01267, 0.01288) |
0.314 (0.311, 0.316) |
-0.215 (-0.228, -0.201) |
0.01132 (0.01119, 0.01144) |
0.338 (0.334, 0.343) |
-0.354 (-0.372, -0.333) |
0.01439 (0.01432, 0.01448) |
0.296 (0.294, 0.298) |
-0.100 (-0.108, -0.091) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection and no gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0.5 |
0 |
55.510 (53.068, 57.830) |
56.450 (54.268, 58.596) |
0.00522 (0.00503, 0.00540) |
0.409 (0.397, 0.421) |
-0.717 (-0.768, -0.662) |
0.00212 (0.00205, 0.00217) |
0.519 (0.505, 0.534) |
-1.178 (-1.240, -1.112) |
0.00541 (0.00526, 0.00559) |
0.400 (0.393, 0.407) |
-0.657 (-0.699, -0.617) |
0.00094 (9e-04, 0.00097) |
0.543 (0.529, 0.558) |
-1.247 (-1.303, -1.184) |
|
|
|
|
|
|
|
|
BGS |
70 |
X |
0.5 |
0 |
109.780 (107.028, 112.762) |
114.677 (111.834, 117.298) |
0.01186 (0.01161, 0.01211) |
0.305 (0.298, 0.312) |
-0.118 (-0.155, -0.078) |
0.00416 (0.00408, 0.00424) |
0.414 (0.405, 0.424) |
-0.675 (-0.716, -0.634) |
0.01229 (0.01211, 0.01246) |
0.290 (0.286, 0.294) |
-0.041 (-0.063, -0.019) |
0.00178 (0.00173, 0.00182) |
0.441 (0.427, 0.456) |
-0.779 (-0.836, -0.729) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0.5 |
0 |
- |
- |
0.00550 (0.00533, 0.00567) |
0.429 (0.422, 0.437) |
-0.845 (-0.880, -0.812) |
0.00541 (0.00523, 0.00559) |
0.433 (0.424, 0.441) |
-0.871 (-0.911, -0.832) |
0.00573 (0.00558, 0.00587) |
0.424 (0.418, 0.430) |
-0.817 (-0.850, -0.786) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1 |
0 |
75.188 (72.855, 77.564) |
71.740 (69.793, 73.761) |
0.00754 (0.00739, 0.00769) |
0.370 (0.360, 0.380) |
-0.536 (-0.573, -0.497) |
0.00278 (0.00274, 0.00282) |
0.492 (0.481, 0.504) |
-1.064 (-1.111, -1.015) |
0.00824 (0.00809, 0.00837) |
0.347 (0.343, 0.351) |
-0.408 (-0.430, -0.385) |
0.00125 (0.00122, 0.00128) |
0.497 (0.485, 0.509) |
-1.074 (-1.126, -1.023) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1 |
0 |
120.028 (116.581, 123.401) |
126.332 (122.935, 129.654) |
0.01382 (0.01356, 0.01408) |
0.285 (0.278, 0.293) |
-0.015 (-0.052, 0.018) |
0.00456 (0.00446, 0.00466) |
0.404 (0.394, 0.414) |
-0.619 (-0.659, -0.579) |
0.01393 (0.01385, 0.01402) |
0.280 (0.277, 0.283) |
0.010 (-0.002, 0.023) |
0.00195 (0.00191, 0.00199) |
0.424 (0.414, 0.434) |
-0.679 (-0.725, -0.631) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1 |
0 |
- |
- |
0.00801 (0.00778, 0.00827) |
0.382 (0.377, 0.387) |
-0.605 (-0.628, -0.582) |
0.00757 (0.00734, 0.00780) |
0.387 (0.379, 0.396) |
-0.629 (-0.666, -0.593) |
0.00888 (0.00868, 0.00906) |
0.361 (0.356, 0.366) |
-0.491 (-0.511, -0.470) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
1.5 |
0 |
83.850 (81.080, 86.952) |
75.160 (72.520, 77.537) |
0.00869 (0.00847, 0.00890) |
0.360 (0.353, 0.367) |
-0.453 (-0.482, -0.427) |
0.00292 (0.00285, 0.00299) |
0.491 (0.479, 0.504) |
-1.064 (-1.121, -1.008) |
0.00985 (0.00971, 0.00999) |
0.330 (0.326, 0.334) |
-0.288 (-0.309, -0.269) |
0.00141 (0.00138, 0.00144) |
0.492 (0.482, 0.503) |
-1.055 (-1.095, -1.017) |
|
|
|
|
|
|
|
BGS |
70 |
X |
1.5 |
0 |
124.142 (120.646, 127.880) |
131.850 (128.158, 134.714) |
0.01459 (0.01431, 0.01484) |
0.283 (0.277, 0.289) |
-0.018 (-0.057, 0.020) |
0.00468 (0.00459, 0.00477) |
0.404 (0.394, 0.413) |
-0.606 (-0.651, -0.563) |
0.01459 (0.01451, 0.01467) |
0.280 (0.277, 0.284) |
0.009 (-0.002, 0.020) |
0.00202 (0.00199, 0.00206) |
0.429 (0.418, 0.439) |
-0.703 (-0.744, -0.662) |
|
|
|
|
|
|
|
SSW |
70 |
X |
1.5 |
0 |
- |
- |
0.00953 (0.00938, 0.00967) |
0.359 (0.354, 0.364) |
-0.475 (-0.501, -0.447) |
0.00868 (0.00843, 0.00892) |
0.377 (0.368, 0.386) |
-0.557 (-0.597, -0.522) |
0.01086 (0.01066, 0.01104) |
0.334 (0.330, 0.339) |
-0.329 (-0.352, -0.302) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2 |
0 |
88.595 (85.311, 91.577) |
81.915 (78.271, 85.305) |
0.00980 (0.00962, 0.01000) |
0.340 (0.333, 0.348) |
-0.348 (-0.381, -0.313) |
0.00313 (0.00302, 0.00324) |
0.480 (0.470, 0.491) |
-1.020 (-1.059, -0.981) |
0.01105 (0.01090, 0.01119) |
0.312 (0.309, 0.315) |
-0.192 (-0.205, -0.179) |
0.00149 (0.00145, 0.00153) |
0.480 (0.469, 0.492) |
-0.983 (-1.030, -0.937) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2 |
0 |
124.758 (121.415, 128.082) |
128.985 (125.549, 132.410) |
0.01488 (0.01468, 0.01510) |
0.286 (0.280, 0.293) |
-0.020 (-0.053, 0.016) |
0.00474 (0.00464, 0.00485) |
0.403 (0.398, 0.409) |
-0.612 (-0.646, -0.578) |
0.01494 (0.01482, 0.01505) |
0.278 (0.274, 0.282) |
0.019 (0.000, 0.037) |
0.00203 (0.00198, 0.00207) |
0.428 (0.417, 0.439) |
-0.726 (-0.762, -0.693) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2 |
0 |
- |
- |
0.01020 (0.01000, 0.01038) |
0.346 (0.341, 0.351) |
-0.411 (-0.437, -0.384) |
0.00913 (0.00891, 0.00932) |
0.368 (0.361, 0.375) |
-0.532 (-0.557, -0.505) |
0.01196 (0.01183, 0.01210) |
0.320 (0.317, 0.323) |
-0.243 (-0.264, -0.226) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
2.5 |
0 |
96.672 (93.893, 99.357) |
85.058 (81.844, 88.261) |
0.01028 (0.01008, 0.01046) |
0.334 (0.328, 0.340) |
-0.324 (-0.354, -0.297) |
0.00326 (0.00318, 0.00334) |
0.470 (0.460, 0.479) |
-1.000 (-1.042, -0.960) |
0.01191 (0.01179, 0.01201) |
0.304 (0.301, 0.308) |
-0.140 (-0.160, -0.122) |
0.00160 (0.00156, 0.00164) |
0.464 (0.456, 0.472) |
-0.887 (-0.935, -0.849) |
|
|
|
|
|
|
|
BGS |
70 |
X |
2.5 |
0 |
127.758 (124.150, 131.557) |
133.290 (130.003, 136.692) |
0.01512 (0.01490, 0.01533) |
0.283 (0.277, 0.290) |
-0.010 (-0.039, 0.018) |
0.00482 (0.00470, 0.00494) |
0.413 (0.403, 0.422) |
-0.644 (-0.680, -0.606) |
0.01513 (0.01506, 0.01520) |
0.278 (0.276, 0.281) |
0.020 (0.008, 0.033) |
0.00207 (0.00203, 0.00212) |
0.422 (0.413, 0.432) |
-0.685 (-0.728, -0.644) |
|
|
|
|
|
|
|
SSW |
70 |
X |
2.5 |
0 |
- |
- |
0.01116 (0.01099, 0.01133) |
0.335 (0.329, 0.341) |
-0.333 (-0.361, -0.308) |
0.00980 (0.00959, 0.01000) |
0.360 (0.353, 0.368) |
-0.463 (-0.498, -0.431) |
0.01301 (0.01288, 0.01316) |
0.308 (0.305, 0.312) |
-0.174 (-0.193, -0.155) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Autosome
with no crossing over |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
0 |
1 |
30.345 (27.673, 32.944) |
29.372 (26.196, 32.542) |
0.00168 (0.00154, 0.00181) |
0.563 (0.542, 0.588) |
-1.306 (-1.401, -1.202) |
0.00105 (0.00098, 0.00113) |
0.606 (0.574, 0.637) |
-1.483 (-1.588, -1.375) |
0.00167 (0.00154, 0.00180) |
0.551 (0.529, 0.574) |
-1.247 (-1.365, -1.123) |
0.00051 (0.00047, 0.00054) |
0.644 (0.621, 0.666) |
-1.601 (-1.703, -1.501) |
|
|
|
|
|
|
|
BGS |
70 |
A |
0 |
1 |
30.752 (27.806, 33.760) |
31.453 (29.250, 33.587) |
0.00198 (0.00180, 0.00217) |
0.488 (0.447, 0.526) |
-0.880 (-1.082, -0.690) |
0.00118 (0.00109, 0.00127) |
0.553 (0.522, 0.585) |
-1.183 (-1.331, -1.027) |
0.00196 (0.00179, 0.00213) |
0.487 (0.456, 0.517) |
-0.900 (-1.055, -0.727) |
0.00053 (0.00049, 0.00058) |
0.609 (0.577, 0.642) |
-1.385 (-1.521, -1.238) |
|
|
|
|
|
|
|
SSW |
70 |
A |
0 |
1 |
- |
- |
0.00297 (0.00268, 0.00329) |
0.553 (0.520, 0.587) |
-1.246 (-1.445, -1.077) |
0.00293 (0.00264, 0.00321) |
0.548 (0.520, 0.578) |
-1.236 (-1.404, -1.092) |
0.00292 (0.00262, 0.00322) |
0.553 (0.520, 0.585) |
-1.238 (-1.414, -1.072) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
0 |
1 |
36.123 (32.715, 39.085) |
34.735 (30.548, 38.692) |
0.00098 (0.00088, 0.00107) |
0.571 (0.542, 0.601) |
-1.264 (-1.410, -1.114) |
0.00069 (0.00062, 0.00075) |
0.612 (0.582, 0.643) |
-1.431 (-1.561, -1.308) |
0.00097 (0.00089, 0.00106) |
0.570 (0.540, 0.595) |
-1.267 (-1.400, -1.140) |
0.00033 (3e-04, 0.00035) |
0.662 (0.632, 0.690) |
-1.607 (-1.734, -1.486) |
|
|
|
|
|
|
|
BGS |
140 |
A |
0 |
1 |
39.453 (34.979, 43.867) |
35.500 (30.991, 39.640) |
0.00098 (0.00087, 0.00110) |
0.580 (0.546, 0.612) |
-1.256 (-1.450, -1.057) |
0.00069 (6e-04, 0.00078) |
0.637 (0.602, 0.666) |
-1.478 (-1.632, -1.294) |
0.00099 (0.00086, 0.00112) |
0.582 (0.549, 0.610) |
-1.282 (-1.462, -1.085) |
0.00034 (3e-04, 0.00038) |
0.669 (0.641, 0.696) |
-1.593 (-1.734, -1.441) |
|
|
|
|
|
|
|
SSW |
140 |
A |
0 |
1 |
- |
- |
0.00207 (0.00187, 0.00225) |
0.578 (0.548, 0.609) |
-1.456 (-1.627, -1.310) |
0.00206 (0.00188, 0.00225) |
0.573 (0.543, 0.605) |
-1.449 (-1.587, -1.303) |
0.00206 (0.00187, 0.00223) |
0.577 (0.549, 0.606) |
-1.454 (-1.611, -1.315) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
0 |
1 |
45.167 (40.191, 49.603) |
43.650 (38.884, 47.882) |
0.00067 (0.00061, 0.00074) |
0.600 (0.566, 0.637) |
-1.417 (-1.600, -1.231) |
0.00053 (0.00049, 0.00058) |
0.634 (0.610, 0.662) |
-1.540 (-1.705, -1.382) |
7e-04 (0.00063, 0.00077) |
0.590 (0.561, 0.621) |
-1.394 (-1.574, -1.211) |
0.00025 (0.00023, 0.00028) |
0.682 (0.655, 0.712) |
-1.713 (-1.874, -1.559) |
|
|
|
|
|
|
|
BGS |
210 |
A |
0 |
1 |
43.640 (38.671, 48.377) |
39.870 (35.910, 43.794) |
0.00067 (0.00059, 0.00077) |
0.599 (0.565, 0.633) |
-1.417 (-1.616, -1.224) |
5e-04 (0.00044, 0.00056) |
0.638 (0.607, 0.674) |
-1.587 (-1.766, -1.421) |
0.00066 (0.00057, 0.00073) |
0.599 (0.571, 0.627) |
-1.455 (-1.648, -1.266) |
0.00025 (0.00022, 0.00028) |
0.676 (0.648, 0.705) |
-1.691 (-1.876, -1.518) |
0.731 (0.689, 0.766) |
-2.128 (-2.324, -1.897) |
|
|
|
|
|
SSW |
210 |
A |
0 |
1 |
- |
- |
0.00190 (0.00174, 0.00207) |
0.604 (0.588, 0.621) |
-1.467 (-1.568, -1.373) |
0.00188 (0.00171, 0.00205) |
0.601 (0.583, 0.618) |
-1.456 (-1.567, -1.356) |
0.00188 (0.00172, 0.00204) |
0.606 (0.587, 0.623) |
-1.471 (-1.570, -1.362) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection and no crossing over |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0 |
1 |
19.190 (17.473, 21.068) |
19.793 (17.535, 22.149) |
0.00122 (0.00109, 0.00137) |
0.568 (0.539, 0.596) |
-1.348 (-1.490, -1.216) |
0.00078 (0.00068, 0.00087) |
0.622 (0.593, 0.653) |
-1.534 (-1.656, -1.408) |
0.00121 (0.00108, 0.00135) |
0.570 (0.541, 0.596) |
-1.366 (-1.523, -1.218) |
0.00034 (3e-04, 0.00038) |
0.665 (0.635, 0.698) |
-1.671 (-1.770, -1.575) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0 |
1 |
28.960 (27.285, 30.510) |
28.780 (26.513, 31.216) |
0.00191 (0.00174, 0.00209) |
0.501 (0.467, 0.532) |
-1.072 (-1.213, -0.924) |
0.00107 (0.00099, 0.00117) |
0.578 (0.548, 0.608) |
-1.396 (-1.535, -1.250) |
0.00186 (0.00172, 0.00201) |
0.504 (0.474, 0.533) |
-1.085 (-1.202, -0.959) |
0.00049 (0.00046, 0.00052) |
0.608 (0.585, 0.633) |
-1.459 (-1.554, -1.367) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0 |
1 |
- |
- |
0.00161 (0.00138, 0.00182) |
0.588 (0.553, 0.620) |
-1.436 (-1.621, -1.269) |
0.00164 (0.00143, 0.00185) |
0.578 (0.540, 0.616) |
-1.338 (-1.525, -1.136) |
0.00162 (0.00141, 0.00183) |
0.579 (0.544, 0.612) |
-1.386 (-1.576, -1.226) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0 |
1 |
31.973 (28.840, 35.160) |
28.650 (25.340, 31.694) |
0.00081 (7e-04, 0.00092) |
0.588 (0.543, 0.636) |
-1.347 (-1.582, -1.125) |
0.00055 (0.00049, 0.00061) |
0.639 (0.591, 0.691) |
-1.525 (-1.751, -1.336) |
0.00081 (0.00071, 0.00091) |
0.580 (0.530, 0.627) |
-1.325 (-1.556, -1.113) |
0.00027 (0.00025, 0.00029) |
0.665 (0.627, 0.708) |
-1.624 (-1.800, -1.455) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0 |
1 |
33.392 (29.885, 36.272) |
31.965 (29.438, 34.567) |
0.00093 (0.00082, 0.00101) |
0.563 (0.533, 0.595) |
-1.291 (-1.433, -1.141) |
0.00061 (0.00056, 0.00067) |
0.610 (0.577, 0.643) |
-1.465 (-1.591, -1.339) |
0.00093 (0.00084, 0.00101) |
0.551 (0.524, 0.577) |
-1.266 (-1.404, -1.135) |
0.00029 (0.00026, 0.00031) |
0.651 (0.619, 0.682) |
-1.624 (-1.751, -1.500) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0 |
1 |
- |
- |
0.00117 (0.00100, 0.00131) |
0.608 (0.578, 0.637) |
-1.570 (-1.720, -1.434) |
0.00117 (0.00100, 0.00132) |
0.603 (0.572, 0.638) |
-1.547 (-1.694, -1.410) |
0.00120 (0.00103, 0.00134) |
0.601 (0.573, 0.628) |
-1.528 (-1.673, -1.395) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0 |
1 |
41.333 (37.186, 45.273) |
39.455 (35.241, 43.648) |
0.00065 (0.00058, 0.00072) |
0.568 (0.534, 0.602) |
-1.360 (-1.549, -1.180) |
0.00047 (0.00042, 0.00052) |
0.614 (0.579, 0.648) |
-1.542 (-1.703, -1.388) |
0.00065 (0.00058, 0.00072) |
0.577 (0.541, 0.613) |
-1.411 (-1.613, -1.215) |
0.00023 (0.00021, 0.00025) |
0.656 (0.625, 0.690) |
-1.679 (-1.851, -1.524) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0 |
1 |
44.220 (37.902, 50.430) |
42.140 (35.760, 47.390) |
0.00074 (0.00058, 0.00086) |
0.577 (0.537, 0.616) |
-1.301 (-1.514, -1.075) |
0.00053 (0.00044, 0.00061) |
0.626 (0.589, 0.661) |
-1.468 (-1.665, -1.290) |
0.00073 (0.00059, 0.00087) |
0.575 (0.536, 0.614) |
-1.317 (-1.534, -1.094) |
0.00025 (0.00022, 0.00029) |
0.657 (0.618, 0.694) |
-1.605 (-1.795, -1.401) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0 |
1 |
- |
- |
0.00116 (0.00101, 0.00130) |
0.619 (0.580, 0.661) |
-1.555 (-1.722, -1.394) |
0.00115 (0.00101, 0.00130) |
0.623 (0.589, 0.661) |
-1.567 (-1.737, -1.410) |
0.00116 (0.00100, 0.00130) |
0.619 (0.582, 0.661) |
-1.543 (-1.716, -1.374) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection and no crossing over |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0 |
1 |
19.065 (16.783, 21.432) |
16.727 (14.105, 18.795) |
0.00100 (0.00088, 0.00112) |
0.598 (0.562, 0.634) |
-1.523 (-1.704, -1.352) |
0.00061 (0.00054, 0.00068) |
0.644 (0.610, 0.675) |
-1.636 (-1.772, -1.493) |
0.00101 (0.00091, 0.00112) |
0.600 (0.566, 0.634) |
-1.523 (-1.687, -1.365) |
0.00031 (0.00028, 0.00033) |
0.689 (0.662, 0.716) |
-1.805 (-1.928, -1.668) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0 |
1 |
29.122 (26.733, 31.367) |
27.768 (25.119, 30.415) |
0.00180 (0.00163, 0.00196) |
0.497 (0.472, 0.525) |
-1.041 (-1.186, -0.893) |
0.00102 (0.00093, 0.00112) |
0.576 (0.542, 0.607) |
-1.332 (-1.462, -1.199) |
0.00188 (0.00173, 0.00204) |
0.481 (0.454, 0.506) |
-0.987 (-1.122, -0.841) |
0.00049 (0.00045, 0.00053) |
0.596 (0.568, 0.623) |
-1.403 (-1.519, -1.285) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0 |
1 |
- |
- |
0.00136 (0.00117, 0.00153) |
0.571 (0.530, 0.611) |
-1.296 (-1.515, -1.091) |
0.00133 (0.00117, 0.00149) |
0.574 (0.533, 0.613) |
-1.309 (-1.513, -1.119) |
0.00134 (0.00116, 0.00151) |
0.576 (0.541, 0.611) |
-1.334 (-1.523, -1.137) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0 |
1 |
32.660 (28.347, 36.923) |
30.520 (26.433, 34.752) |
0.00086 (0.00074, 0.00096) |
0.569 (0.532, 0.607) |
-1.346 (-1.525, -1.177) |
0.00056 (0.00049, 0.00064) |
0.627 (0.595, 0.659) |
-1.552 (-1.690, -1.426) |
0.00083 (0.00072, 0.00093) |
0.570 (0.536, 0.606) |
-1.364 (-1.534, -1.190) |
0.00028 (0.00024, 0.00031) |
0.663 (0.629, 0.693) |
-1.657 (-1.805, -1.512) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0 |
1 |
35.155 (31.885, 38.258) |
34.928 (31.126, 38.489) |
0.00096 (0.00088, 0.00104) |
0.555 (0.524, 0.589) |
-1.233 (-1.401, -1.064) |
0.00064 (0.00057, 7e-04) |
0.612 (0.571, 0.654) |
-1.478 (-1.649, -1.322) |
0.00094 (0.00085, 0.00103) |
0.562 (0.527, 0.605) |
-1.289 (-1.485, -1.109) |
3e-04 (0.00027, 0.00032) |
0.657 (0.624, 0.694) |
-1.618 (-1.755, -1.477) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0 |
1 |
- |
- |
0.00091 (0.00083, 0.00099) |
0.617 (0.591, 0.642) |
-1.575 (-1.727, -1.437) |
0.00092 (0.00082, 0.00102) |
0.624 (0.601, 0.646) |
-1.578 (-1.741, -1.434) |
0.00091 (0.00082, 0.00100) |
0.619 (0.593, 0.644) |
-1.588 (-1.751, -1.436) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0 |
1 |
43.943 (38.669, 49.378) |
40.880 (35.205, 46.385) |
0.00068 (0.00058, 0.00077) |
0.593 (0.566, 0.620) |
-1.438 (-1.617, -1.283) |
0.00048 (0.00042, 0.00054) |
0.642 (0.611, 0.673) |
-1.613 (-1.797, -1.458) |
0.00067 (0.00059, 0.00074) |
0.593 (0.566, 0.620) |
-1.444 (-1.616, -1.284) |
0.00023 (2e-04, 0.00026) |
0.673 (0.640, 0.702) |
-1.714 (-1.846, -1.592) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0 |
1 |
39.985 (35.715, 44.052) |
38.133 (33.855, 42.854) |
0.00065 (0.00058, 0.00071) |
0.593 (0.559, 0.627) |
-1.388 (-1.593, -1.186) |
0.00048 (0.00042, 0.00052) |
0.632 (0.602, 0.663) |
-1.499 (-1.683, -1.322) |
0.00066 (0.00059, 0.00074) |
0.590 (0.550, 0.627) |
-1.367 (-1.595, -1.170) |
0.00023 (0.00021, 0.00026) |
0.674 (0.641, 0.704) |
-1.679 (-1.845, -1.493) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0 |
1 |
- |
- |
0.00082 (0.00073, 9e-04) |
0.655 (0.627, 0.685) |
-1.704 (-1.840, -1.568) |
0.00084 (0.00075, 0.00093) |
0.652 (0.618, 0.689) |
-1.673 (-1.819, -1.530) |
0.00082 (0.00073, 9e-04) |
0.655 (0.625, 0.684) |
-1.702 (-1.840, -1.579) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Autosome
with no crossing over or gene conversio n |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
0 |
0 |
20.905 (17.769, 23.735) |
20.660 (17.563, 23.677) |
0.00127 (0.00112, 0.00141) |
0.581 (0.544, 0.615) |
-1.464 (-1.641, -1.284) |
0.00082 (0.00073, 0.00093) |
0.652 (0.618, 0.687) |
-1.702 (-1.869, -1.548) |
0.00125 (0.00111, 0.00139) |
0.584 (0.549, 0.617) |
-1.485 (-1.650, -1.334) |
0.00038 (0.00034, 0.00042) |
0.678 (0.645, 0.709) |
-1.768 (-1.877, -1.660) |
|
|
|
|
|
|
|
BGS |
70 |
A |
0 |
0 |
20.335 (17.563, 23.310) |
18.620 (15.420, 21.730) |
0.00116 (0.00099, 0.00133) |
0.632 (0.589, 0.678) |
-1.550 (-1.756, -1.366) |
0.00076 (0.00066, 0.00085) |
0.676 (0.635, 0.719) |
-1.742 (-1.908, -1.570) |
0.00117 (0.00101, 0.00134) |
0.622 (0.582, 0.666) |
-1.540 (-1.747, -1.326) |
0.00038 (0.00034, 0.00042) |
0.695 (0.662, 0.731) |
-1.778 (-1.976, -1.620) |
|
|
|
|
|
|
|
SSW |
70 |
A |
0 |
0 |
- |
- |
0.00187 (0.00166, 0.00208) |
0.643 (0.610, 0.675) |
-1.820 (-1.937, -1.709) |
0.00187 (0.00167, 0.00208) |
0.643 (0.612, 0.678) |
-1.798 (-1.919, -1.678) |
0.00186 (0.00167, 0.00208) |
0.649 (0.619, 0.679) |
-1.832 (-1.966, -1.725) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
0 |
0 |
32.265 (24.273, 39.287) |
30.058 (20.720, 37.385) |
0.00083 (0.00067, 0.00098) |
0.584 (0.523, 0.643) |
-1.338 (-1.595, -1.084) |
6e-04 (5e-04, 0.00069) |
0.631 (0.583, 0.680) |
-1.580 (-1.769, -1.405) |
0.00081 (0.00064, 0.00095) |
0.587 (0.525, 0.639) |
-1.396 (-1.654, -1.176) |
3e-04 (0.00025, 0.00034) |
0.670 (0.619, 0.717) |
-1.663 (-1.894, -1.481) |
|
|
|
|
|
|
|
BGS |
140 |
A |
0 |
0 |
29.690 (24.314, 34.555) |
26.755 (22.003, 31.213) |
0.00073 (0.00063, 0.00084) |
0.624 (0.581, 0.669) |
-1.527 (-1.680, -1.375) |
0.00051 (0.00045, 0.00058) |
0.680 (0.638, 0.719) |
-1.749 (-1.894, -1.600) |
0.00071 (0.00061, 0.00081) |
0.629 (0.587, 0.679) |
-1.570 (-1.757, -1.397) |
0.00026 (0.00022, 0.00029) |
0.718 (0.681, 0.757) |
-1.851 (-2.002, -1.706) |
|
|
|
|
|
|
|
SSW |
140 |
A |
0 |
0 |
- |
- |
0.00160 (0.00146, 0.00175) |
0.658 (0.621, 0.696) |
-1.785 (-1.942, -1.643) |
0.00160 (0.00145, 0.00174) |
0.660 (0.620, 0.701) |
-1.802 (-1.961, -1.660) |
0.00160 (0.00146, 0.00174) |
0.661 (0.623, 0.697) |
-1.812 (-1.946, -1.678) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
0 |
0 |
39.583 (32.211, 45.895) |
34.892 (29.344, 40.030) |
0.00062 (0.00052, 7e-04) |
0.618 (0.578, 0.669) |
-1.473 (-1.658, -1.296) |
0.00048 (0.00041, 0.00053) |
0.658 (0.619, 0.700) |
-1.607 (-1.757, -1.466) |
0.00062 (0.00053, 7e-04) |
0.628 (0.590, 0.672) |
-1.491 (-1.643, -1.343) |
0.00024 (0.00021, 0.00027) |
0.697 (0.662, 0.738) |
-1.732 (-1.901, -1.594) |
|
|
|
|
|
|
|
BGS |
210 |
A |
0 |
0 |
38.072 (29.957, 45.082) |
34.172 (25.680, 41.280) |
0.00057 (0.00045, 0.00067) |
0.639 (0.594, 0.691) |
-1.628 (-1.842, -1.448) |
0.00043 (0.00034, 5e-04) |
0.681 (0.626, 0.737) |
-1.749 (-1.958, -1.550) |
0.00057 (0.00045, 0.00067) |
0.642 (0.591, 0.696) |
-1.637 (-1.869, -1.419) |
0.00022 (0.00018, 0.00026) |
0.719 (0.677, 0.764) |
-1.870 (-2.054, -1.693) |
|
|
|
|
|
|
|
SSW |
210 |
A |
0 |
0 |
- |
- |
0.00154 (0.00130, 0.00176) |
0.683 (0.632, 0.744) |
-1.867 (-2.103, -1.663) |
0.00151 (0.00128, 0.00173) |
0.684 (0.636, 0.739) |
-1.882 (-2.104, -1.700) |
0.00152 (0.00130, 0.00175) |
0.682 (0.633, 0.738) |
-1.873 (-2.107, -1.678) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with weak selection and no crossing over or gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0 |
0 |
16.535 (13.918, 18.960) |
15.838 (12.622, 18.567) |
0.00094 (8e-04, 0.00108) |
0.629 (0.589, 0.669) |
-1.716 (-1.839, -1.600) |
0.00062 (0.00053, 0.00071) |
0.674 (0.630, 0.720) |
-1.802 (-1.944, -1.665) |
0.00095 (0.00082, 0.00108) |
0.625 (0.592, 0.662) |
-1.667 (-1.782, -1.549) |
3e-04 (0.00026, 0.00033) |
0.687 (0.653, 0.721) |
-1.831 (-1.949, -1.729) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0 |
0 |
18.660 (16.058, 20.890) |
18.540 (15.943, 20.951) |
0.00115 (0.00103, 0.00126) |
0.588 (0.550, 0.629) |
-1.450 (-1.651, -1.254) |
0.00071 (0.00065, 0.00077) |
0.649 (0.612, 0.681) |
-1.702 (-1.849, -1.567) |
0.00112 (0.00100, 0.00122) |
0.594 (0.553, 0.634) |
-1.504 (-1.690, -1.323) |
0.00033 (3e-04, 0.00036) |
0.706 (0.672, 0.736) |
-1.823 (-1.970, -1.684) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0 |
0 |
- |
- |
0.00121 (0.00105, 0.00134) |
0.686 (0.648, 0.722) |
-1.758 (-1.974, -1.579) |
0.00120 (0.00106, 0.00133) |
0.673 (0.636, 0.714) |
-1.694 (-1.922, -1.498) |
0.00122 (0.00107, 0.00136) |
0.685 (0.650, 0.721) |
-1.753 (-1.963, -1.573) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0 |
0 |
26.325 (22.409, 29.925) |
26.018 (21.713, 29.750) |
0.00067 (0.00059, 0.00074) |
0.620 (0.584, 0.653) |
-1.648 (-1.819, -1.498) |
0.00051 (0.00045, 0.00055) |
0.656 (0.623, 0.689) |
-1.757 (-1.912, -1.612) |
0.00068 (0.00061, 0.00075) |
0.616 (0.585, 0.647) |
-1.640 (-1.817, -1.485) |
0.00024 (0.00021, 0.00026) |
0.688 (0.658, 0.719) |
-1.840 (-1.973, -1.712) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0 |
0 |
28.625 (23.478, 32.927) |
27.503 (23.349, 31.897) |
0.00067 (0.00059, 0.00074) |
0.619 (0.571, 0.666) |
-1.584 (-1.795, -1.372) |
0.00049 (0.00044, 0.00054) |
0.663 (0.620, 0.705) |
-1.711 (-1.872, -1.560) |
0.00068 (0.00061, 0.00075) |
0.608 (0.566, 0.652) |
-1.553 (-1.748, -1.347) |
0.00023 (0.00021, 0.00025) |
0.700 (0.661, 0.740) |
-1.835 (-1.993, -1.680) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0 |
0 |
- |
- |
0.00092 (0.00082, 0.00100) |
0.721 (0.682, 0.761) |
-1.898 (-2.054, -1.745) |
0.00092 (0.00082, 0.00103) |
0.714 (0.675, 0.753) |
-1.884 (-2.050, -1.725) |
0.00092 (0.00081, 0.00101) |
0.727 (0.690, 0.764) |
-1.920 (-2.084, -1.768) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0 |
0 |
29.330 (23.912, 33.869) |
27.817 (22.389, 32.758) |
0.00049 (4e-04, 0.00056) |
0.639 (0.604, 0.675) |
-1.640 (-1.821, -1.460) |
0.00036 (3e-04, 0.00041) |
0.691 (0.653, 0.736) |
-1.768 (-1.936, -1.613) |
0.00049 (0.00041, 0.00055) |
0.641 (0.604, 0.680) |
-1.633 (-1.819, -1.448) |
0.00018 (0.00015, 0.00021) |
0.729 (0.700, 0.766) |
-1.926 (-2.087, -1.795) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0 |
0 |
30.980 (26.238, 35.115) |
28.340 (24.497, 32.155) |
0.00049 (0.00042, 0.00056) |
0.655 (0.609, 0.701) |
-1.677 (-1.848, -1.497) |
0.00036 (0.00031, 0.00041) |
0.689 (0.642, 0.737) |
-1.789 (-1.966, -1.604) |
0.00048 (0.00041, 0.00054) |
0.654 (0.607, 0.706) |
-1.696 (-1.877, -1.527) |
0.00018 (0.00016, 2e-04) |
0.739 (0.694, 0.785) |
-1.951 (-2.106, -1.803) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0 |
0 |
- |
- |
0.00102 (0.00086, 0.00117) |
0.687 (0.657, 0.719) |
-1.841 (-2.062, -1.650) |
0.00102 (0.00087, 0.00118) |
0.679 (0.647, 0.714) |
-1.789 (-2.015, -1.587) |
0.00103 (0.00086, 0.00119) |
0.683 (0.650, 0.714) |
-1.806 (-2.017, -1.612) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X
chromosome with strong selection and no crossing over or gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
X |
0 |
0 |
13.367 (10.635, 15.747) |
12.812 (9.853, 15.209) |
0.00076 (0.00062, 0.00089) |
0.667 (0.625, 0.710) |
-1.772 (-1.931, -1.627) |
0.00052 (0.00042, 6e-04) |
0.712 (0.669, 0.759) |
-1.876 (-2.006, -1.749) |
0.00076 (0.00063, 0.00086) |
0.670 (0.628, 0.717) |
-1.780 (-1.931, -1.637) |
0.00025 (0.00022, 0.00028) |
0.737 (0.702, 0.769) |
-1.975 (-2.105, -1.857) |
|
|
|
|
|
|
|
BGS |
70 |
X |
0 |
0 |
16.495 (14.101, 18.777) |
16.747 (13.910, 19.500) |
0.00108 (0.00092, 0.00123) |
0.613 (0.573, 0.654) |
-1.534 (-1.739, -1.351) |
0.00069 (0.00059, 0.00079) |
0.681 (0.642, 0.726) |
-1.767 (-1.950, -1.601) |
0.00108 (0.00092, 0.00123) |
0.619 (0.574, 0.664) |
-1.527 (-1.753, -1.338) |
0.00032 (0.00028, 0.00036) |
0.708 (0.657, 0.766) |
-1.777 (-2.009, -1.593) |
|
|
|
|
|
|
|
SSW |
70 |
X |
0 |
0 |
- |
- |
0.00087 (0.00075, 0.00097) |
0.698 (0.661, 0.730) |
-1.898 (-2.060, -1.743) |
0.00084 (0.00072, 0.00095) |
0.703 (0.666, 0.739) |
-1.888 (-2.036, -1.745) |
0.00084 (0.00073, 0.00094) |
0.700 (0.666, 0.736) |
-1.921 (-2.071, -1.788) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
X |
0 |
0 |
24.438 (21.730, 27.132) |
23.293 (20.566, 25.855) |
0.00065 (0.00057, 0.00071) |
0.613 (0.572, 0.657) |
-1.578 (-1.776, -1.405) |
0.00048 (0.00042, 0.00053) |
0.648 (0.603, 0.692) |
-1.683 (-1.878, -1.505) |
0.00066 (0.00059, 0.00072) |
0.613 (0.568, 0.660) |
-1.568 (-1.769, -1.388) |
0.00022 (2e-04, 0.00024) |
0.683 (0.642, 0.729) |
-1.817 (-1.966, -1.669) |
|
|
|
|
|
|
|
BGS |
140 |
X |
0 |
0 |
25.925 (21.755, 30.017) |
24.843 (20.336, 29.272) |
0.00074 (6e-04, 0.00085) |
0.608 (0.567, 0.651) |
-1.523 (-1.781, -1.281) |
0.00051 (0.00043, 0.00058) |
0.661 (0.628, 0.697) |
-1.711 (-1.923, -1.532) |
0.00072 (6e-04, 0.00083) |
0.620 (0.584, 0.662) |
-1.578 (-1.805, -1.380) |
0.00024 (0.00021, 0.00028) |
0.694 (0.664, 0.727) |
-1.781 (-1.961, -1.616) |
|
|
|
|
|
|
|
SSW |
140 |
X |
0 |
0 |
- |
- |
0.00087 (0.00062, 0.00106) |
0.725 (0.693, 0.763) |
-1.993 (-2.222, -1.823) |
0.00087 (0.00058, 0.00109) |
0.725 (0.688, 0.766) |
-1.987 (-2.227, -1.796) |
0.00086 (0.00062, 0.00104) |
0.721 (0.685, 0.760) |
-1.988 (-2.237, -1.812) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
0 |
0 |
29.652 (24.743, 33.586) |
26.858 (23.248, 30.032) |
0.00047 (0.00042, 0.00052) |
0.627 (0.594, 0.658) |
-1.501 (-1.682, -1.331) |
0.00036 (0.00032, 4e-04) |
0.679 (0.638, 0.720) |
-1.685 (-1.856, -1.529) |
0.00047 (0.00041, 0.00052) |
0.631 (0.598, 0.667) |
-1.540 (-1.735, -1.369) |
0.00018 (0.00016, 2e-04) |
0.712 (0.681, 0.742) |
-1.817 (-1.947, -1.687) |
|
|
|
|
|
|
|
BGS |
210 |
X |
0 |
0 |
34.745 (26.888, 42.097) |
32.242 (23.766, 39.475) |
5e-04 (0.00043, 0.00057) |
0.638 (0.584, 0.698) |
-1.729 (-1.871, -1.595) |
0.00037 (0.00032, 0.00042) |
0.683 (0.639, 0.730) |
-1.886 (-2.016, -1.760) |
0.00049 (0.00042, 0.00055) |
0.647 (0.593, 0.702) |
-1.775 (-1.914, -1.648) |
0.00019 (0.00016, 0.00021) |
0.711 (0.667, 0.762) |
-1.963 (-2.075, -1.853) |
|
|
|
|
|
|
|
SSW |
210 |
X |
0 |
0 |
- |
- |
0.00071 (6e-04, 0.00081) |
0.735 (0.700, 0.767) |
-2.019 (-2.157, -1.875) |
0.00073 (0.00062, 0.00083) |
0.730 (0.694, 0.765) |
-1.979 (-2.128, -1.832) |
0.00072 (0.00061, 0.00082) |
0.733 (0.700, 0.769) |
-2.008 (-2.157, -1.865) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Results
for 20 genes |
|
Xs: strong selection on
X-linked favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
with
gene conversion |
|
Xw: weak selection on
X-linked favorable mutations |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
0.5 |
1 |
20.922 (19.763, 22.145) |
19.570 (18.200, 21.079) |
0.00758 (0.00720, 0.00796) |
0.373 (0.356, 0.389) |
-0.513 (-0.581, -0.442) |
0.00260 (0.00245, 0.00275) |
0.509 (0.482, 0.535) |
-1.110 (-1.206, -1.021) |
0.00784 (0.00758, 0.00810) |
0.356 (0.349, 0.364) |
-0.439 (-0.484, -0.398) |
0.00122 (0.00116, 0.00128) |
0.504 (0.488, 0.524) |
-1.051 (-1.123, -0.981) |
|
|
|
|
|
|
|
BGS |
20 |
X |
0.5 |
1 |
34.312 (33.075, 35.565) |
38.428 (35.755, 40.830) |
0.01459 (0.01423, 0.01492) |
0.281 (0.270, 0.293) |
0.012 (-0.037, 0.056) |
0.00471 (0.00448, 0.00494) |
0.399 (0.382, 0.414) |
-0.613 (-0.672, -0.557) |
0.01453 (0.01434, 0.01469) |
0.279 (0.272, 0.285) |
0.024 (-0.010, 0.056) |
0.00199 (0.00194, 0.00203) |
0.440 (0.426, 0.452) |
-0.719 (-0.789, -0.642) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
0.5 |
1 |
- |
- |
0.00789 (0.00752, 0.00820) |
0.381 (0.369, 0.393) |
-0.568 (-0.615, -0.518) |
0.00718 (0.00677, 0.00756) |
0.389 (0.374, 0.405) |
-0.618 (-0.697, -0.531) |
0.00851 (0.00815, 0.00882) |
0.363 (0.353, 0.373) |
-0.476 (-0.524, -0.432) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
1 |
1 |
23.883 (22.365, 25.357) |
24.890 (23.598, 26.110) |
0.00976 (0.00940, 0.01010) |
0.337 (0.327, 0.346) |
-0.360 (-0.387, -0.331) |
0.00330 (0.00318, 0.00343) |
0.479 (0.459, 0.497) |
-0.979 (-1.039, -0.910) |
0.01070 (0.01048, 0.01094) |
0.323 (0.317, 0.328) |
-0.248 (-0.275, -0.218) |
0.00144 (0.00136, 0.00151) |
0.481 (0.454, 0.508) |
-1.023 (-1.123, -0.922) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1 |
1 |
35.468 (33.753, 37.275) |
38.528 (36.553, 40.267) |
0.01535 (0.01503, 0.01560) |
0.284 (0.278, 0.289) |
-0.016 (-0.055, 0.025) |
0.00481 (0.00466, 0.00497) |
0.415 (0.400, 0.433) |
-0.671 (-0.743, -0.603) |
0.01546 (0.01526, 0.01565) |
0.279 (0.275, 0.284) |
0.019 (-0.003, 0.042) |
0.00205 (0.00198, 0.00212) |
0.433 (0.419, 0.448) |
-0.741 (-0.806, -0.672) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
1 |
1 |
- |
- |
0.01003 (0.00973, 0.01031) |
0.346 (0.339, 0.354) |
-0.381 (-0.429, -0.337) |
0.00898 (0.00861, 0.00932) |
0.367 (0.350, 0.384) |
-0.472 (-0.552, -0.391) |
0.01125 (0.01107, 0.01143) |
0.328 (0.322, 0.333) |
-0.261 (-0.289, -0.234) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
1.5 |
1 |
27.438 (25.867, 28.922) |
24.695 (23.688, 25.857) |
0.01080 (0.01049, 0.01114) |
0.333 (0.323, 0.343) |
-0.346 (-0.386, -0.303) |
0.00332 (0.00318, 0.00349) |
0.481 (0.461, 0.501) |
-1.030 (-1.092, -0.960) |
0.01198 (0.01174, 0.01220) |
0.316 (0.310, 0.321) |
-0.198 (-0.224, -0.173) |
0.00156 (0.00151, 0.00162) |
0.474 (0.459, 0.491) |
-0.936 (-1.018, -0.856) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1.5 |
1 |
36.792 (35.001, 38.305) |
38.080 (36.671, 39.590) |
0.01591 (0.01550, 0.01630) |
0.297 (0.288, 0.307) |
-0.049 (-0.096, 0.000) |
0.00492 (0.00474, 0.00510) |
0.401 (0.381, 0.418) |
-0.610 (-0.672, -0.548) |
0.01593 (0.01578, 0.01607) |
0.276 (0.270, 0.282) |
0.032 (0.004, 0.058) |
0.00211 (0.00202, 0.00218) |
0.442 (0.422, 0.461) |
-0.762 (-0.853, -0.674) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
1.5 |
1 |
- |
- |
0.01111 (0.01079, 0.01139) |
0.332 (0.323, 0.341) |
-0.308 (-0.355, -0.262) |
0.00945 (0.00896, 0.01001) |
0.368 (0.353, 0.385) |
-0.504 (-0.579, -0.432) |
0.01283 (0.01257, 0.01311) |
0.310 (0.305, 0.315) |
-0.166 (-0.197, -0.134) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
2 |
1 |
27.918 (26.515, 29.307) |
27.380 (25.680, 29.057) |
0.01146 (0.01109, 0.01183) |
0.327 (0.315, 0.339) |
-0.294 (-0.345, -0.240) |
0.00358 (0.00340, 0.00377) |
0.465 (0.446, 0.486) |
-0.940 (-1.013, -0.876) |
0.01273 (0.01258, 0.01289) |
0.304 (0.300, 0.307) |
-0.142 (-0.156, -0.128) |
0.00165 (0.00158, 0.00173) |
0.482 (0.465, 0.501) |
-0.977 (-1.045, -0.909) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2 |
1 |
38.623 (36.885, 40.209) |
39.180 (37.432, 41.155) |
0.01570 (0.01528, 0.01608) |
0.291 (0.282, 0.299) |
-0.055 (-0.104, -0.006) |
0.00490 (0.00471, 0.00508) |
0.407 (0.387, 0.426) |
-0.666 (-0.720, -0.606) |
0.01618 (0.01599, 0.01637) |
0.277 (0.272, 0.282) |
0.033 (0.004, 0.065) |
0.00217 (0.00208, 0.00225) |
0.418 (0.403, 0.434) |
-0.653 (-0.732, -0.573) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
2 |
1 |
- |
- |
0.01188 (0.01165, 0.01211) |
0.319 (0.314, 0.325) |
-0.259 (-0.295, -0.226) |
0.01036 (0.00994, 0.01075) |
0.341 (0.328, 0.352) |
-0.386 (-0.437, -0.336) |
0.01368 (0.01340, 0.01394) |
0.296 (0.290, 0.301) |
-0.105 (-0.127, -0.080) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
2.5 |
1 |
30.685 (29.018, 32.435) |
28.130 (26.433, 29.642) |
0.01216 (0.01178, 0.01252) |
0.321 (0.311, 0.331) |
-0.244 (-0.317, -0.176) |
0.00365 (0.00346, 0.00382) |
0.459 (0.441, 0.477) |
-0.906 (-0.972, -0.836) |
0.01352 (0.01333, 0.01372) |
0.292 (0.287, 0.298) |
-0.086 (-0.117, -0.058) |
0.00178 (0.00170, 0.00185) |
0.455 (0.435, 0.475) |
-0.904 (-0.988, -0.825) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2.5 |
1 |
38.280 (36.810, 40.092) |
39.532 (38.243, 40.815) |
0.01634 (0.01590, 0.01681) |
0.284 (0.276, 0.292) |
0.007 (-0.033, 0.045) |
0.00497 (0.00479, 0.00513) |
0.413 (0.396, 0.429) |
-0.658 (-0.736, -0.573) |
0.01623 (0.01608, 0.01639) |
0.276 (0.271, 0.281) |
0.023 (0.001, 0.044) |
0.00219 (0.00212, 0.00226) |
0.417 (0.403, 0.432) |
-0.645 (-0.709, -0.594) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
2.5 |
1 |
- |
- |
0.01254 (0.01223, 0.01287) |
0.321 (0.314, 0.329) |
-0.238 (-0.281, -0.205) |
0.01100 (0.01065, 0.01133) |
0.338 (0.328, 0.348) |
-0.367 (-0.414, -0.321) |
0.01434 (0.01408, 0.01459) |
0.296 (0.290, 0.302) |
-0.088 (-0.112, -0.067) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
0.5 |
1 |
25.203 (24.148, 26.427) |
25.117 (23.497, 26.905) |
0.00926 (0.00885, 0.00964) |
0.348 (0.337, 0.359) |
-0.375 (-0.430, -0.322) |
0.00320 (0.00303, 0.00338) |
0.480 (0.463, 0.497) |
-1.010 (-1.099, -0.934) |
0.00984 (0.00956, 0.01011) |
0.333 (0.326, 0.340) |
-0.269 (-0.297, -0.239) |
0.00142 (0.00138, 0.00147) |
0.491 (0.472, 0.509) |
-0.996 (-1.063, -0.922) |
|
|
|
|
|
|
|
|
BGS |
20 |
X |
0.5 |
1 |
36.635 (35.263, 38.050) |
38.102 (36.018, 40.255) |
0.01455 (0.01430, 0.01480) |
0.290 (0.280, 0.299) |
-0.038 (-0.080, 0.005) |
0.00481 (0.00463, 0.00500) |
0.406 (0.387, 0.425) |
-0.632 (-0.709, -0.550) |
0.01472 (0.01452, 0.01493) |
0.282 (0.276, 0.288) |
0.002 (-0.030, 0.031) |
0.00206 (0.00197, 0.00214) |
0.421 (0.406, 0.437) |
-0.683 (-0.760, -0.611) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
0.5 |
1 |
- |
- |
0.00994 (0.00960, 0.01026) |
0.350 (0.339, 0.361) |
-0.401 (-0.455, -0.345) |
0.00958 (0.00921, 0.00994) |
0.347 (0.335, 0.360) |
-0.394 (-0.480, -0.325) |
0.01091 (0.01059, 0.01123) |
0.331 (0.324, 0.338) |
-0.290 (-0.320, -0.260) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
1 |
1 |
29.328 (27.678, 31.035) |
26.422 (25.160, 27.567) |
0.01112 (0.01066, 0.01154) |
0.316 (0.301, 0.328) |
-0.230 (-0.292, -0.162) |
0.00358 (0.00345, 0.00371) |
0.446 (0.429, 0.465) |
-0.878 (-0.942, -0.820) |
0.01211 (0.01190, 0.01234) |
0.302 (0.297, 0.307) |
-0.130 (-0.154, -0.105) |
0.00168 (0.00159, 0.00176) |
0.460 (0.449, 0.471) |
-0.868 (-0.936, -0.806) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1 |
1 |
37.610 (36.143, 39.337) |
38.087 (36.693, 39.554) |
0.01563 (0.01529, 0.01597) |
0.280 (0.273, 0.288) |
-0.023 (-0.065, 0.020) |
0.00477 (0.00459, 0.00495) |
0.407 (0.390, 0.425) |
-0.628 (-0.696, -0.549) |
0.01560 (0.01542, 0.01577) |
0.282 (0.278, 0.287) |
-0.003 (-0.033, 0.022) |
0.00214 (0.00207, 0.00221) |
0.424 (0.409, 0.438) |
-0.663 (-0.711, -0.616) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
1 |
1 |
- |
- |
0.01215 (0.01180, 0.01246) |
0.327 (0.320, 0.336) |
-0.276 (-0.314, -0.235) |
0.01112 (0.01079, 0.01149) |
0.345 (0.334, 0.356) |
-0.376 (-0.431, -0.323) |
0.01339 (0.01314, 0.01365) |
0.306 (0.300, 0.313) |
-0.157 (-0.188, -0.130) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
1.5 |
1 |
30.715 (29.213, 32.129) |
28.480 (27.235, 29.720) |
0.01213 (0.01174, 0.01248) |
0.321 (0.311, 0.332) |
-0.233 (-0.292, -0.170) |
0.00375 (0.00362, 0.00388) |
0.462 (0.447, 0.477) |
-0.898 (-0.963, -0.845) |
0.01330 (0.01314, 0.01347) |
0.302 (0.298, 0.307) |
-0.134 (-0.154, -0.113) |
0.00180 (0.00173, 0.00186) |
0.464 (0.445, 0.485) |
-0.858 (-0.946, -0.773) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1.5 |
1 |
37.715 (35.696, 39.565) |
40.517 (38.380, 42.592) |
0.01586 (0.01556, 0.01616) |
0.286 (0.275, 0.297) |
-0.027 (-0.076, 0.024) |
0.00500 (0.00481, 0.00519) |
0.402 (0.383, 0.422) |
-0.612 (-0.701, -0.527) |
0.01598 (0.01583, 0.01613) |
0.277 (0.272, 0.283) |
0.026 (0.000, 0.050) |
0.00214 (0.00206, 0.00221) |
0.421 (0.403, 0.437) |
-0.673 (-0.735, -0.602) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
1.5 |
1 |
- |
- |
0.01304 (0.01279, 0.01329) |
0.316 (0.310, 0.321) |
-0.217 (-0.242, -0.193) |
0.01149 (0.01094, 0.01202) |
0.333 (0.319, 0.346) |
-0.325 (-0.403, -0.246) |
0.01433 (0.01416, 0.01449) |
0.299 (0.293, 0.304) |
-0.110 (-0.133, -0.086) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
2 |
1 |
30.788 (29.650, 32.092) |
28.918 (27.465, 30.600) |
0.01302 (0.01270, 0.01338) |
0.305 (0.293, 0.317) |
-0.151 (-0.202, -0.097) |
0.00379 (0.00366, 0.00396) |
0.449 (0.431, 0.470) |
-0.884 (-0.959, -0.811) |
0.01402 (0.01384, 0.01417) |
0.293 (0.288, 0.298) |
-0.077 (-0.097, -0.057) |
0.00180 (0.00174, 0.00186) |
0.448 (0.428, 0.469) |
-0.868 (-0.953, -0.791) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2 |
1 |
39.288 (37.446, 40.962) |
39.400 (38.138, 40.792) |
0.01630 (0.01591, 0.01669) |
0.282 (0.271, 0.292) |
-0.006 (-0.060, 0.051) |
0.00498 (0.00480, 0.00514) |
0.419 (0.404, 0.431) |
-0.687 (-0.753, -0.624) |
0.01597 (0.01576, 0.01616) |
0.280 (0.275, 0.284) |
-0.005 (-0.031, 0.020) |
0.00217 (0.00209, 0.00224) |
0.423 (0.408, 0.439) |
-0.668 (-0.736, -0.596) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
2 |
1 |
- |
- |
0.01368 (0.01344, 0.01393) |
0.306 (0.298, 0.312) |
-0.136 (-0.167, -0.104) |
0.01177 (0.01144, 0.01210) |
0.339 (0.328, 0.351) |
-0.326 (-0.385, -0.274) |
0.01504 (0.01482, 0.01525) |
0.294 (0.290, 0.299) |
-0.059 (-0.087, -0.033) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
2.5 |
1 |
33.390 (31.723, 35.218) |
29.565 (27.580, 31.602) |
0.01344 (0.01310, 0.01378) |
0.313 (0.304, 0.321) |
-0.164 (-0.211, -0.120) |
0.00380 (0.00361, 0.00397) |
0.465 (0.452, 0.480) |
-0.929 (-0.998, -0.868) |
0.01458 (0.01438, 0.01481) |
0.294 (0.288, 0.299) |
-0.063 (-0.096, -0.030) |
0.00194 (0.00186, 0.00202) |
0.442 (0.424, 0.460) |
-0.771 (-0.853, -0.695) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2.5 |
1 |
38.625 (36.583, 40.489) |
39.828 (37.758, 42.017) |
0.01650 (0.01614, 0.01687) |
0.282 (0.272, 0.291) |
-0.018 (-0.062, 0.026) |
0.00513 (0.00489, 0.00537) |
0.406 (0.390, 0.421) |
-0.591 (-0.671, -0.514) |
0.01628 (0.01609, 0.01647) |
0.276 (0.272, 0.280) |
0.030 (0.010, 0.048) |
0.00220 (0.00215, 0.00225) |
0.421 (0.406, 0.436) |
-0.676 (-0.735, -0.607) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
2.5 |
1 |
- |
- |
0.01401 (0.01373, 0.01428) |
0.299 (0.293, 0.305) |
-0.127 (-0.154, -0.103) |
0.01208 (0.01164, 0.01250) |
0.324 (0.313, 0.335) |
-0.284 (-0.340, -0.228) |
0.01533 (0.01516, 0.01549) |
0.284 (0.278, 0.290) |
-0.040 (-0.066, -0.012) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
0.5 |
1 |
34.797 (32.703, 36.910) |
35.690 (34.183, 37.550) |
0.01339 (0.01290, 0.01387) |
0.331 (0.315, 0.347) |
-0.244 (-0.318, -0.168) |
0.00465 (0.00445, 0.00488) |
0.451 (0.433, 0.469) |
-0.828 (-0.895, -0.763) |
0.01447 (0.01414, 0.01482) |
0.306 (0.298, 0.314) |
-0.160 (-0.199, -0.118) |
0.00205 (0.00194, 0.00217) |
0.462 (0.445, 0.480) |
-0.877 (-0.938, -0.821) |
|
|
|
|
|
|
|
BGS |
20 |
A |
0.5 |
1 |
46.392 (44.528, 48.338) |
47.390 (45.658, 49.142) |
0.01817 (0.01770, 0.01870) |
0.289 (0.278, 0.301) |
-0.042 (-0.084, -0.005) |
0.00601 (0.00580, 0.00621) |
0.417 (0.401, 0.432) |
-0.664 (-0.737, -0.590) |
0.01811 (0.01785, 0.01838) |
0.278 (0.274, 0.283) |
0.019 (-0.007, 0.041) |
0.00260 (0.00252, 0.00268) |
0.432 (0.417, 0.446) |
-0.727 (-0.804, -0.644) |
|
|
|
|
|
|
|
SSW |
20 |
A |
0.5 |
1 |
- |
- |
0.01618 (0.01586, 0.01654) |
0.313 (0.305, 0.321) |
-0.204 (-0.241, -0.161) |
0.01449 (0.01402, 0.01496) |
0.334 (0.325, 0.344) |
-0.296 (-0.357, -0.241) |
0.01717 (0.01674, 0.01755) |
0.303 (0.298, 0.308) |
-0.139 (-0.177, -0.103) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
1 |
1 |
41.005 (38.795, 43.125) |
38.155 (35.843, 40.410) |
0.01632 (0.01588, 0.01674) |
0.306 (0.300, 0.315) |
-0.153 (-0.188, -0.120) |
0.00505 (0.00475, 0.00535) |
0.456 (0.437, 0.472) |
-0.878 (-0.974, -0.793) |
0.01713 (0.01687, 0.01741) |
0.289 (0.284, 0.294) |
-0.052 (-0.076, -0.027) |
0.00237 (0.00226, 0.00247) |
0.447 (0.431, 0.466) |
-0.812 (-0.895, -0.729) |
|
|
|
|
|
|
|
BGS |
20 |
A |
1 |
1 |
47.038 (45.180, 48.840) |
50.210 (48.080, 52.377) |
0.02016 (0.01968, 0.02061) |
0.283 (0.275, 0.290) |
0.018 (-0.034, 0.071) |
0.00647 (0.00620, 0.00673) |
0.403 (0.387, 0.419) |
-0.623 (-0.674, -0.569) |
0.01992 (0.01966, 0.02017) |
0.277 (0.273, 0.281) |
0.033 (0.007, 0.058) |
0.00271 (0.00262, 0.00279) |
0.438 (0.423, 0.451) |
-0.717 (-0.776, -0.655) |
|
|
|
|
|
|
|
SSW |
20 |
A |
1 |
1 |
- |
- |
0.01775 (0.01746, 0.01806) |
0.301 (0.293, 0.308) |
-0.148 (-0.182, -0.113) |
0.01571 (0.01530, 0.01614) |
0.313 (0.303, 0.323) |
-0.231 (-0.280, -0.187) |
0.01940 (0.01913, 0.01968) |
0.292 (0.286, 0.298) |
-0.057 (-0.081, -0.032) |
- |
- |
- |
|
|
|
|
|
|
|
|
dpn |
20g |
A |
1.5 |
1 |
41.805 (40.176, 43.366) |
41.470 (39.448, 43.254) |
0.01741 (0.01702, 0.01782) |
0.301 (0.292, 0.311) |
-0.123 (-0.165, -0.077) |
0.00537 (0.00519, 0.00556) |
0.446 (0.432, 0.462) |
-0.808 (-0.865, -0.759) |
0.01835 (0.01807, 0.01862) |
0.289 (0.285, 0.293) |
-0.048 (-0.071, -0.027) |
0.00244 (0.00236, 0.00253) |
0.455 (0.434, 0.473) |
-0.817 (-0.891, -0.738) |
|
|
|
|
|
|
|
dn |
20g |
A |
1.5 |
1 |
50.193 (47.693, 52.622) |
49.758 (47.608, 51.697) |
0.02067 (0.02029, 0.02101) |
0.285 (0.276, 0.294) |
-0.014 (-0.049, 0.023) |
0.00630 (0.00609, 0.00650) |
0.421 (0.406, 0.436) |
-0.669 (-0.735, -0.608) |
0.02040 (0.02018, 0.02065) |
0.278 (0.274, 0.281) |
0.021 (0.003, 0.039) |
0.00285 (0.00276, 0.00294) |
0.433 (0.415, 0.451) |
-0.691 (-0.764, -0.607) |
|
|
|
|
|
|
|
pn |
20g |
A |
1.5 |
1 |
- |
- |
0.01881 (0.01853, 0.01906) |
0.301 (0.297, 0.305) |
-0.116 (-0.137, -0.099) |
0.01648 (0.01603, 0.01693) |
0.325 (0.317, 0.332) |
-0.256 (-0.299, -0.209) |
0.02033 (0.02011, 0.02058) |
0.285 (0.281, 0.289) |
-0.028 (-0.050, -0.008) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
2 |
1 |
45.135 (43.400, 47.040) |
41.930 (39.838, 43.877) |
0.01783 (0.01745, 0.01824) |
0.303 (0.293, 0.313) |
-0.135 (-0.184, -0.084) |
0.00544 (0.00521, 0.00565) |
0.449 (0.432, 0.465) |
-0.866 (-0.921, -0.809) |
0.01932 (0.01913, 0.01952) |
0.284 (0.280, 0.288) |
-0.023 (-0.046, -0.004) |
0.00253 (0.00245, 0.00262) |
0.435 (0.415, 0.458) |
-0.764 (-0.857, -0.671) |
|
|
|
|
|
|
|
BGS |
20 |
A |
2 |
1 |
50.108 (48.346, 51.895) |
51.020 (48.755, 53.115) |
0.02070 (0.02024, 0.02122) |
0.280 (0.270, 0.290) |
-0.009 (-0.050, 0.035) |
0.00648 (0.00629, 0.00667) |
0.411 (0.396, 0.427) |
-0.619 (-0.684, -0.553) |
0.02061 (0.02041, 0.02082) |
0.275 (0.273, 0.278) |
0.023 (0.006, 0.040) |
0.00286 (0.00277, 0.00295) |
0.415 (0.404, 0.426) |
-0.603 (-0.664, -0.550) |
|
|
|
|
|
|
|
SSW |
20 |
A |
2 |
1 |
- |
- |
0.01927 (0.01898, 0.01956) |
0.301 (0.295, 0.306) |
-0.122 (-0.149, -0.096) |
0.01704 (0.01646, 0.01758) |
0.316 (0.307, 0.324) |
-0.221 (-0.267, -0.174) |
0.02107 (0.02083, 0.02132) |
0.285 (0.282, 0.288) |
-0.022 (-0.038, -0.005) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
2.5 |
1 |
44.953 (42.328, 47.412) |
41.947 (39.465, 44.458) |
0.01833 (0.01789, 0.01876) |
0.298 (0.288, 0.307) |
-0.127 (-0.165, -0.087) |
0.00546 (0.00525, 0.00569) |
0.441 (0.423, 0.458) |
-0.806 (-0.886, -0.730) |
0.01978 (0.01961, 0.01995) |
0.283 (0.278, 0.287) |
0.000 (-0.027, 0.031) |
0.00257 (0.00245, 0.00269) |
0.450 (0.437, 0.463) |
-0.806 (-0.863, -0.750) |
|
|
|
|
|
|
|
BGS |
20 |
A |
2.5 |
1 |
49.477 (46.755, 52.022) |
52.873 (51.110, 54.432) |
0.02110 (0.02067, 0.02150) |
0.292 (0.284, 0.300) |
-0.047 (-0.082, -0.008) |
0.00656 (0.00637, 0.00674) |
0.408 (0.396, 0.420) |
-0.630 (-0.695, -0.569) |
0.02096 (0.02072, 0.02117) |
0.277 (0.274, 0.280) |
0.043 (0.026, 0.059) |
0.00283 (0.00272, 0.00293) |
0.435 (0.420, 0.450) |
-0.735 (-0.811, -0.653) |
|
|
|
|
|
|
|
SSW |
20 |
A |
2.5 |
1 |
- |
- |
0.02003 (0.01966, 0.02046) |
0.292 (0.287, 0.297) |
-0.073 (-0.106, -0.039) |
0.01723 (0.01667, 0.01776) |
0.312 (0.306, 0.319) |
-0.219 (-0.242, -0.197) |
0.02120 (0.02102, 0.02138) |
0.280 (0.276, 0.284) |
0.003 (-0.018, 0.026) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Results
for 20 genes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
without
gene conversion |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
0.5 |
0 |
16.335 (14.580, 17.820) |
16.477 (15.085, 17.877) |
0.00541 (0.00507, 0.00577) |
0.421 (0.409, 0.435) |
-0.761 (-0.824, -0.686) |
0.00224 (0.00207, 0.00239) |
0.544 (0.514, 0.573) |
-1.225 (-1.347, -1.100) |
0.00558 (0.00526, 0.00587) |
0.417 (0.405, 0.428) |
-0.782 (-0.844, -0.719) |
0.00097 (0.00089, 0.00105) |
0.542 (0.516, 0.573) |
-1.230 (-1.355, -1.122) |
|
|
|
|
|
|
|
BGS |
20 |
X |
0.5 |
0 |
33.440 (31.510, 35.285) |
34.785 (33.070, 36.272) |
0.01344 (0.01317, 0.01372) |
0.299 (0.290, 0.307) |
-0.118 (-0.168, -0.066) |
0.00439 (0.00424, 0.00454) |
0.420 (0.407, 0.433) |
-0.687 (-0.760, -0.619) |
0.01349 (0.01321, 0.01375) |
0.290 (0.284, 0.296) |
-0.040 (-0.067, -0.013) |
0.00188 (0.00179, 0.00196) |
0.442 (0.426, 0.459) |
-0.752 (-0.830, -0.680) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
0.5 |
0 |
- |
- |
0.00564 (0.00520, 0.00607) |
0.439 (0.423, 0.453) |
-0.859 (-0.942, -0.783) |
0.00577 (0.00519, 0.00631) |
0.446 (0.421, 0.470) |
-0.883 (-0.986, -0.773) |
0.00598 (0.00553, 0.00641) |
0.426 (0.413, 0.437) |
-0.814 (-0.875, -0.748) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
1 |
0 |
21.922 (20.422, 23.262) |
20.027 (18.378, 21.430) |
0.00775 (0.00737, 0.00809) |
0.375 (0.361, 0.391) |
-0.563 (-0.629, -0.496) |
0.00275 (0.00255, 0.00294) |
0.495 (0.476, 0.514) |
-1.064 (-1.159, -0.980) |
0.00831 (0.00806, 0.00855) |
0.354 (0.345, 0.364) |
-0.456 (-0.504, -0.412) |
0.00128 (0.00122, 0.00135) |
0.508 (0.489, 0.528) |
-1.129 (-1.227, -1.037) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1 |
0 |
35.898 (34.398, 37.522) |
37.405 (35.533, 39.275) |
0.01516 (0.01482, 0.01554) |
0.288 (0.277, 0.300) |
-0.041 (-0.113, 0.027) |
0.00470 (0.00448, 0.00491) |
0.415 (0.400, 0.428) |
-0.681 (-0.724, -0.632) |
0.01504 (0.01484, 0.01524) |
0.280 (0.273, 0.285) |
0.024 (-0.012, 0.061) |
0.00206 (0.00200, 0.00213) |
0.433 (0.417, 0.449) |
-0.695 (-0.783, -0.605) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
1 |
0 |
- |
- |
0.00797 (0.00750, 0.00841) |
0.386 (0.373, 0.399) |
-0.613 (-0.679, -0.539) |
0.00754 (0.00703, 0.00795) |
0.393 (0.375, 0.409) |
-0.660 (-0.750, -0.569) |
0.00891 (0.00855, 0.00923) |
0.366 (0.355, 0.375) |
-0.497 (-0.560, -0.433) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
1.5 |
0 |
23.335 (21.788, 24.785) |
22.508 (21.260, 23.750) |
0.00908 (0.00866, 0.00945) |
0.361 (0.344, 0.376) |
-0.486 (-0.565, -0.406) |
0.00303 (0.00291, 0.00315) |
0.505 (0.489, 0.522) |
-1.071 (-1.147, -0.999) |
0.01036 (0.01008, 0.01062) |
0.339 (0.333, 0.345) |
-0.338 (-0.365, -0.308) |
0.00137 (0.00130, 0.00143) |
0.486 (0.464, 0.509) |
-0.997 (-1.074, -0.917) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1.5 |
0 |
37.700 (35.626, 39.909) |
37.970 (35.638, 40.120) |
0.01563 (0.01523, 0.01610) |
0.286 (0.274, 0.298) |
-0.009 (-0.064, 0.044) |
0.00478 (0.00457, 0.00500) |
0.398 (0.378, 0.417) |
-0.628 (-0.711, -0.556) |
0.01568 (0.01551, 0.01585) |
0.278 (0.273, 0.284) |
0.022 (-0.004, 0.051) |
0.00214 (0.00204, 0.00222) |
0.440 (0.425, 0.455) |
-0.750 (-0.812, -0.691) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
1.5 |
0 |
- |
- |
0.00930 (0.00900, 0.00958) |
0.367 (0.358, 0.376) |
-0.503 (-0.539, -0.460) |
0.00833 (0.00780, 0.00881) |
0.385 (0.366, 0.408) |
-0.582 (-0.669, -0.491) |
0.01079 (0.01046, 0.01109) |
0.337 (0.331, 0.342) |
-0.346 (-0.382, -0.312) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
2 |
0 |
26.812 (25.330, 28.255) |
23.863 (22.350, 25.380) |
0.01032 (0.00988, 0.01073) |
0.356 (0.344, 0.368) |
-0.397 (-0.451, -0.342) |
0.00324 (0.00309, 0.00337) |
0.488 (0.468, 0.507) |
-1.048 (-1.140, -0.952) |
0.01176 (0.01152, 0.01201) |
0.314 (0.309, 0.319) |
-0.212 (-0.242, -0.188) |
0.00157 (0.00151, 0.00163) |
0.477 (0.466, 0.492) |
-0.979 (-1.037, -0.923) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2 |
0 |
38.352 (36.588, 39.985) |
39.580 (38.310, 40.945) |
0.01564 (0.01523, 0.01605) |
0.290 (0.282, 0.298) |
-0.046 (-0.090, -0.001) |
0.00499 (0.00482, 0.00516) |
0.398 (0.380, 0.414) |
-0.591 (-0.670, -0.514) |
0.01617 (0.01599, 0.01634) |
0.275 (0.271, 0.279) |
0.043 (0.019, 0.066) |
0.00217 (0.00208, 0.00225) |
0.415 (0.397, 0.432) |
-0.649 (-0.743, -0.551) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
2 |
0 |
- |
- |
0.01019 (0.00995, 0.01043) |
0.353 (0.347, 0.360) |
-0.446 (-0.481, -0.409) |
0.00915 (0.00884, 0.00944) |
0.365 (0.356, 0.374) |
-0.544 (-0.598, -0.489) |
0.01198 (0.01170, 0.01225) |
0.326 (0.320, 0.331) |
-0.293 (-0.328, -0.259) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xs |
2.5 |
0 |
26.160 (24.680, 27.652) |
25.460 (24.058, 27.061) |
0.01082 (0.01044, 0.01119) |
0.329 (0.317, 0.340) |
-0.314 (-0.365, -0.262) |
0.00341 (0.00327, 0.00357) |
0.463 (0.449, 0.478) |
-0.934 (-1.009, -0.867) |
0.01259 (0.01242, 0.01276) |
0.302 (0.298, 0.306) |
-0.156 (-0.182, -0.131) |
0.00157 (0.00150, 0.00165) |
0.479 (0.457, 0.501) |
-0.979 (-1.055, -0.895) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2.5 |
0 |
37.693 (36.353, 38.952) |
38.873 (37.403, 40.357) |
0.01619 (0.01577, 0.01664) |
0.280 (0.273, 0.288) |
0.002 (-0.033, 0.036) |
0.00484 (0.00471, 0.00496) |
0.414 (0.399, 0.429) |
-0.636 (-0.706, -0.561) |
0.01610 (0.01592, 0.01630) |
0.279 (0.272, 0.285) |
0.031 (-0.001, 0.064) |
0.00214 (0.00206, 0.00222) |
0.412 (0.396, 0.429) |
-0.670 (-0.744, -0.593) |
|
|
|
|
|
|
|
SSW |
20 |
Xs |
2.5 |
0 |
- |
- |
0.01148 (0.01118, 0.01177) |
0.334 (0.327, 0.340) |
-0.318 (-0.354, -0.281) |
0.01014 (0.00977, 0.01057) |
0.351 (0.341, 0.363) |
-0.441 (-0.515, -0.375) |
0.01328 (0.01305, 0.01353) |
0.311 (0.307, 0.316) |
-0.170 (-0.196, -0.140) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
0.5 |
0 |
19.930 (18.548, 21.280) |
19.343 (18.210, 20.360) |
0.00680 (0.00648, 0.00710) |
0.393 (0.378, 0.407) |
-0.634 (-0.716, -0.548) |
0.00261 (0.00247, 0.00274) |
0.517 (0.494, 0.540) |
-1.138 (-1.235, -1.045) |
0.00718 (0.00698, 0.00740) |
0.373 (0.364, 0.383) |
-0.542 (-0.575, -0.509) |
0.00118 (0.00112, 0.00125) |
0.531 (0.511, 0.550) |
-1.197 (-1.293, -1.100) |
|
|
|
|
|
|
|
BGS |
20 |
X |
0.5 |
0 |
33.725 (31.901, 35.382) |
35.972 (34.263, 37.779) |
0.01349 (0.01311, 0.01387) |
0.291 (0.281, 0.302) |
-0.050 (-0.099, 0.000) |
0.00450 (0.00431, 0.00469) |
0.406 (0.385, 0.426) |
-0.643 (-0.711, -0.574) |
0.01361 (0.01331, 0.01391) |
0.289 (0.283, 0.294) |
-0.034 (-0.062, -0.002) |
0.00191 (0.00181, 0.00202) |
0.426 (0.411, 0.440) |
-0.745 (-0.829, -0.657) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
0.5 |
0 |
- |
- |
0.00729 (0.00683, 0.00778) |
0.397 (0.385, 0.410) |
-0.672 (-0.734, -0.610) |
0.00740 (0.00692, 0.00791) |
0.393 (0.376, 0.409) |
-0.651 (-0.728, -0.569) |
0.00771 (0.00725, 0.00814) |
0.388 (0.375, 0.401) |
-0.609 (-0.678, -0.541) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
1 |
0 |
24.707 (23.205, 26.157) |
23.810 (22.783, 24.924) |
0.00911 (0.00872, 0.00951) |
0.374 (0.361, 0.387) |
-0.499 (-0.554, -0.444) |
0.00315 (0.00302, 0.00330) |
0.486 (0.469, 0.505) |
-0.992 (-1.086, -0.903) |
0.01004 (0.00973, 0.01034) |
0.339 (0.330, 0.347) |
-0.336 (-0.380, -0.288) |
0.00146 (0.00138, 0.00154) |
0.494 (0.472, 0.518) |
-0.985 (-1.057, -0.908) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1 |
0 |
36.215 (34.084, 38.120) |
38.330 (36.668, 39.837) |
0.01525 (0.01484, 0.01566) |
0.284 (0.273, 0.293) |
-0.009 (-0.073, 0.043) |
0.00472 (0.00452, 0.00491) |
0.416 (0.400, 0.433) |
-0.655 (-0.720, -0.583) |
0.01494 (0.01469, 0.01519) |
0.283 (0.278, 0.289) |
-0.005 (-0.035, 0.022) |
0.00207 (0.00197, 0.00217) |
0.437 (0.418, 0.454) |
-0.722 (-0.804, -0.642) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
1 |
0 |
- |
- |
0.00987 (0.00952, 0.01022) |
0.352 (0.343, 0.361) |
-0.441 (-0.488, -0.401) |
0.00944 (0.00899, 0.00988) |
0.360 (0.348, 0.371) |
-0.483 (-0.554, -0.410) |
0.01105 (0.01076, 0.01136) |
0.332 (0.324, 0.341) |
-0.329 (-0.364, -0.292) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
1.5 |
0 |
27.808 (26.363, 29.216) |
25.247 (23.080, 27.432) |
0.01057 (0.01022, 0.01093) |
0.337 (0.323, 0.352) |
-0.332 (-0.402, -0.271) |
0.00335 (0.00312, 0.00357) |
0.474 (0.455, 0.494) |
-0.981 (-1.075, -0.891) |
0.01196 (0.01168, 0.01224) |
0.313 (0.305, 0.320) |
-0.185 (-0.227, -0.143) |
0.00161 (0.00155, 0.00167) |
0.469 (0.453, 0.486) |
-0.884 (-0.952, -0.812) |
|
|
|
|
|
|
|
BGS |
20 |
X |
1.5 |
0 |
38.190 (36.080, 40.077) |
39.475 (37.848, 41.112) |
0.01561 (0.01522, 0.01597) |
0.285 (0.274, 0.296) |
-0.034 (-0.097, 0.028) |
0.00492 (0.00472, 0.00513) |
0.402 (0.389, 0.417) |
-0.617 (-0.693, -0.542) |
0.01578 (0.01563, 0.01593) |
0.278 (0.272, 0.284) |
0.026 (0.003, 0.050) |
0.00213 (0.00205, 0.00221) |
0.410 (0.396, 0.424) |
-0.667 (-0.727, -0.605) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
1.5 |
0 |
- |
- |
0.01123 (0.01088, 0.01153) |
0.340 (0.334, 0.347) |
-0.363 (-0.403, -0.323) |
0.00998 (0.00954, 0.01041) |
0.360 (0.348, 0.373) |
-0.508 (-0.576, -0.437) |
0.01285 (0.01258, 0.01314) |
0.315 (0.311, 0.320) |
-0.226 (-0.252, -0.199) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
2 |
0 |
29.828 (28.473, 31.337) |
26.310 (24.573, 27.769) |
0.01148 (0.01114, 0.01185) |
0.330 (0.320, 0.340) |
-0.298 (-0.342, -0.249) |
0.00353 (0.00335, 0.00371) |
0.463 (0.449, 0.479) |
-0.938 (-1.008, -0.864) |
0.01308 (0.01290, 0.01325) |
0.301 (0.297, 0.306) |
-0.117 (-0.139, -0.094) |
0.00172 (0.00166, 0.00179) |
0.465 (0.446, 0.483) |
-0.908 (-0.988, -0.828) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2 |
0 |
38.005 (36.458, 39.537) |
39.460 (37.685, 41.402) |
0.01623 (0.01598, 0.01651) |
0.290 (0.280, 0.299) |
-0.015 (-0.075, 0.041) |
0.00501 (0.00483, 0.00519) |
0.413 (0.398, 0.426) |
-0.640 (-0.709, -0.578) |
0.01597 (0.01578, 0.01616) |
0.279 (0.275, 0.283) |
0.013 (-0.008, 0.032) |
0.00220 (0.00212, 0.00227) |
0.424 (0.406, 0.442) |
-0.690 (-0.764, -0.614) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
2 |
0 |
- |
- |
0.01201 (0.01176, 0.01227) |
0.324 (0.320, 0.329) |
-0.287 (-0.320, -0.255) |
0.01057 (0.01009, 0.01101) |
0.346 (0.337, 0.355) |
-0.401 (-0.450, -0.357) |
0.01373 (0.01351, 0.01395) |
0.300 (0.295, 0.306) |
-0.134 (-0.159, -0.105) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
Xw |
2.5 |
0 |
31.152 (29.428, 32.792) |
28.677 (27.016, 30.460) |
0.01264 (0.01228, 0.01303) |
0.320 (0.311, 0.328) |
-0.219 (-0.260, -0.173) |
0.00372 (0.00351, 0.00394) |
0.457 (0.439, 0.477) |
-0.881 (-0.963, -0.806) |
0.01381 (0.01362, 0.01400) |
0.294 (0.289, 0.298) |
-0.090 (-0.117, -0.063) |
0.00182 (0.00175, 0.00188) |
0.456 (0.443, 0.471) |
-0.840 (-0.906, -0.776) |
|
|
|
|
|
|
|
BGS |
20 |
X |
2.5 |
0 |
37.803 (36.588, 39.280) |
39.553 (38.143, 40.832) |
0.01607 (0.01571, 0.01646) |
0.284 (0.275, 0.292) |
-0.028 (-0.078, 0.020) |
0.00504 (0.00489, 0.00520) |
0.410 (0.394, 0.425) |
-0.648 (-0.708, -0.588) |
0.01601 (0.01582, 0.01620) |
0.277 (0.271, 0.283) |
0.022 (0.000, 0.047) |
0.00212 (0.00204, 0.00219) |
0.418 (0.404, 0.431) |
-0.673 (-0.727, -0.624) |
|
|
|
|
|
|
|
SSW |
20 |
Xw |
2.5 |
0 |
- |
- |
0.01274 (0.01246, 0.01299) |
0.320 (0.315, 0.326) |
-0.233 (-0.258, -0.206) |
0.01128 (0.01099, 0.01155) |
0.341 (0.331, 0.351) |
-0.386 (-0.442, -0.337) |
0.01455 (0.01436, 0.01474) |
0.298 (0.294, 0.303) |
-0.104 (-0.129, -0.079) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
0.5 |
0 |
29.322 (27.601, 30.982) |
31.323 (29.343, 33.070) |
0.01033 (0.00981, 0.01080) |
0.359 (0.343, 0.374) |
-0.423 (-0.507, -0.330) |
0.00397 (0.00379, 0.00415) |
0.459 (0.440, 0.477) |
-0.920 (-0.996, -0.851) |
0.01134 (0.01112, 0.01155) |
0.332 (0.323, 0.341) |
-0.283 (-0.328, -0.239) |
0.00169 (0.00160, 0.00177) |
0.490 (0.474, 0.507) |
-1.000 (-1.066, -0.936) |
|
|
|
|
|
|
|
|
BGS |
20 |
A |
0.5 |
0 |
41.650 (40.080, 43.456) |
44.508 (42.595, 46.202) |
0.01651 (0.01602, 0.01701) |
0.303 (0.292, 0.314) |
-0.096 (-0.166, -0.019) |
0.00565 (0.00541, 0.00590) |
0.419 (0.401, 0.435) |
-0.676 (-0.752, -0.605) |
0.01689 (0.01670, 0.01707) |
0.282 (0.277, 0.287) |
0.002 (-0.038, 0.040) |
0.00240 (0.00231, 0.00250) |
0.434 (0.419, 0.448) |
-0.738 (-0.791, -0.680) |
|
|
|
|
|
|
|
SSW |
20 |
A |
0.5 |
0 |
- |
- |
0.01235 (0.01180, 0.01285) |
0.368 (0.357, 0.382) |
-0.522 (-0.579, -0.462) |
0.01198 (0.01144, 0.01249) |
0.379 (0.365, 0.394) |
-0.555 (-0.621, -0.500) |
0.01347 (0.01298, 0.01393) |
0.350 (0.342, 0.358) |
-0.401 (-0.442, -0.359) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
1 |
0 |
36.325 (34.478, 38.177) |
34.047 (32.523, 35.520) |
0.01333 (0.01294, 0.01373) |
0.346 (0.335, 0.356) |
-0.345 (-0.397, -0.289) |
0.00447 (0.00427, 0.00467) |
0.474 (0.459, 0.489) |
-1.001 (-1.079, -0.918) |
0.01490 (0.01458, 0.01524) |
0.306 (0.300, 0.312) |
-0.159 (-0.198, -0.122) |
0.00210 (0.00200, 0.00220) |
0.476 (0.462, 0.489) |
-0.967 (-1.033, -0.903) |
|
|
|
|
|
|
|
BGS |
20 |
A |
1 |
0 |
45.568 (43.468, 47.855) |
48.922 (46.646, 51.272) |
0.01915 (0.01879, 0.01946) |
0.288 (0.280, 0.296) |
-0.006 (-0.055, 0.041) |
0.00616 (0.00599, 0.00632) |
0.406 (0.396, 0.417) |
-0.641 (-0.692, -0.594) |
0.01882 (0.01852, 0.01911) |
0.286 (0.280, 0.292) |
-0.010 (-0.042, 0.023) |
0.00265 (0.00257, 0.00272) |
0.448 (0.435, 0.463) |
-0.798 (-0.862, -0.736) |
|
|
|
|
|
|
|
SSW |
20 |
A |
1 |
0 |
- |
- |
0.01473 (0.01433, 0.01514) |
0.344 (0.338, 0.349) |
-0.394 (-0.429, -0.362) |
0.01404 (0.01345, 0.01471) |
0.346 (0.332, 0.357) |
-0.402 (-0.466, -0.340) |
0.01677 (0.01639, 0.01717) |
0.315 (0.310, 0.320) |
-0.191 (-0.221, -0.162) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
1.5 |
0 |
37.977 (36.411, 39.607) |
36.547 (35.226, 37.900) |
0.01509 (0.01464, 0.01554) |
0.321 (0.311, 0.332) |
-0.276 (-0.340, -0.218) |
0.00486 (0.00467, 0.00506) |
0.464 (0.446, 0.483) |
-0.938 (-1.005, -0.878) |
0.01698 (0.01665, 0.01727) |
0.297 (0.292, 0.302) |
-0.123 (-0.155, -0.094) |
0.00221 (0.00211, 0.00229) |
0.469 (0.457, 0.482) |
-0.917 (-0.973, -0.864) |
|
|
|
|
|
|
|
BGS |
20 |
A |
1.5 |
0 |
46.370 (44.564, 48.037) |
50.513 (48.350, 52.515) |
0.01965 (0.01924, 0.02006) |
0.289 (0.279, 0.298) |
-0.026 (-0.073, 0.025) |
0.00631 (0.00606, 0.00657) |
0.409 (0.393, 0.424) |
-0.629 (-0.694, -0.567) |
0.01990 (0.01977, 0.02005) |
0.275 (0.270, 0.281) |
0.029 (0.004, 0.054) |
0.00266 (0.00257, 0.00275) |
0.442 (0.427, 0.458) |
-0.749 (-0.817, -0.682) |
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|
|
|
|
|
|
SSW |
20 |
A |
1.5 |
0 |
- |
- |
0.01694 (0.01657, 0.01727) |
0.320 (0.314, 0.326) |
-0.232 (-0.256, -0.206) |
0.01530 (0.01478, 0.01582) |
0.336 (0.326, 0.345) |
-0.326 (-0.382, -0.269) |
0.01879 (0.01853, 0.01905) |
0.300 (0.296, 0.305) |
-0.117 (-0.149, -0.086) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
2 |
0 |
41.525 (39.173, 43.495) |
39.105 (37.595, 40.532) |
0.01634 (0.01582, 0.01685) |
0.321 (0.312, 0.330) |
-0.223 (-0.276, -0.166) |
0.00508 (0.00488, 0.00527) |
0.452 (0.431, 0.474) |
-0.850 (-0.937, -0.770) |
0.01835 (0.01808, 0.01859) |
0.283 (0.279, 0.287) |
-0.028 (-0.057, -0.003) |
0.00238 (0.00226, 0.00247) |
0.450 (0.431, 0.472) |
-0.848 (-0.942, -0.762) |
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|
|
|
|
|
|
BGS |
20 |
A |
2 |
0 |
48.255 (46.843, 49.627) |
49.972 (47.668, 51.907) |
0.01982 (0.01939, 0.02024) |
0.289 (0.281, 0.297) |
-0.069 (-0.104, -0.032) |
0.00634 (0.00613, 0.00656) |
0.418 (0.405, 0.432) |
-0.646 (-0.700, -0.594) |
0.02073 (0.02048, 0.02098) |
0.273 (0.270, 0.276) |
0.069 (0.053, 0.088) |
0.00276 (0.00270, 0.00282) |
0.430 (0.419, 0.442) |
-0.713 (-0.748, -0.669) |
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|
|
|
|
|
|
SSW |
20 |
A |
2 |
0 |
- |
- |
0.01766 (0.01723, 0.01806) |
0.305 (0.299, 0.311) |
-0.172 (-0.205, -0.136) |
0.01581 (0.01532, 0.01626) |
0.326 (0.317, 0.336) |
-0.303 (-0.345, -0.259) |
0.01975 (0.01943, 0.02005) |
0.288 (0.283, 0.293) |
-0.056 (-0.081, -0.032) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
20 |
A |
2.5 |
0 |
42.770 (40.988, 44.702) |
40.763 (39.468, 42.102) |
0.01690 (0.01650, 0.01732) |
0.311 (0.303, 0.318) |
-0.193 (-0.227, -0.164) |
0.00527 (0.00511, 0.00544) |
0.434 (0.422, 0.448) |
-0.798 (-0.860, -0.742) |
0.01901 (0.01885, 0.01918) |
0.286 (0.282, 0.291) |
-0.039 (-0.065, -0.014) |
0.00245 (0.00237, 0.00255) |
0.450 (0.435, 0.467) |
-0.823 (-0.887, -0.754) |
|
|
|
|
|
|
|
BGS |
20 |
A |
2.5 |
0 |
48.682 (46.400, 50.695) |
51.365 (48.405, 53.799) |
0.02084 (0.02040, 0.02131) |
0.288 (0.278, 0.297) |
-0.029 (-0.082, 0.020) |
0.00651 (0.00620, 0.00677) |
0.396 (0.382, 0.410) |
-0.588 (-0.647, -0.527) |
0.02072 (0.02047, 0.02098) |
0.273 (0.268, 0.279) |
0.026 (-0.001, 0.051) |
0.00276 (0.00266, 0.00286) |
0.431 (0.417, 0.444) |
-0.722 (-0.781, -0.664) |
|
|
|
|
|
|
|
SSW |
20 |
A |
2.5 |
0 |
- |
- |
0.01880 (0.01860, 0.01901) |
0.300 (0.295, 0.305) |
-0.120 (-0.143, -0.093) |
0.01668 (0.01626, 0.01704) |
0.317 (0.305, 0.327) |
-0.216 (-0.281, -0.146) |
0.02055 (0.02028, 0.02080) |
0.286 (0.283, 0.289) |
-0.034 (-0.058, -0.011) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
SIMULATIONS
WITH NON-STANDARD PARAMETERS |
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Purifying
selection on intergenic sites with mean gamma = 72 |
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Weak
selection on X |
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|
BGS-SSW |
70 |
X |
1 |
1 |
91.250 (88.700, 93.280) |
85.680 (80.971, 89.299) |
0.00982 (0.00924, 0.01033) |
0.322 (0.309, 0.336) |
-0.205 (-0.294, -0.116) |
0.00312 (0.00304, 0.00321) |
0.444 (0.438, 0.450) |
-0.887 (-0.927, -0.844) |
0.00952 (0.00908, 0.00992) |
0.329 (0.321, 0.337) |
-0.269 (-0.356, -0.214) |
0.00152 (0.00148, 0.00155) |
0.454 (0.435, 0.474) |
-0.864 (-0.955, -0.774) |
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|
BGS |
70 |
X |
1 |
1 |
117.230 (111.080, 122.360) |
121.460 (116.900, 126.020) |
0.01266 (0.01218, 0.01302) |
0.280 (0.271, 0.289) |
-0.018 (-0.069, 0.030) |
0.00428 (0.00411, 0.00445) |
0.399 (0.385, 0.411) |
-0.639 (-0.721, -0.538) |
0.01250 (0.01224, 0.01276) |
0.281 (0.269, 0.292) |
0.018 (-0.052, 0.070) |
0.00186 (0.00179, 0.00193) |
0.411 (0.394, 0.429) |
-0.621 (-0.659, -0.570) |
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SSW |
70 |
X |
1 |
1 |
- |
- |
0.01092 (0.01053, 0.01123) |
0.324 (0.313, 0.334) |
-0.255 (-0.291, -0.210) |
0.01001 (0.00982, 0.01025) |
0.344 (0.333, 0.359) |
-0.355 (-0.409, -0.318) |
0.01119 (0.01066, 0.01168) |
0.314 (0.310, 0.320) |
-0.198 (-0.230, -0.176) |
- |
- |
- |
|
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BGS-SSW |
140 |
X |
1 |
1 |
176.490 (174.250, 178.890) |
169.140 (167.890, 170.380) |
0.00918 (0.00916, 0.00920) |
0.314 (0.303, 0.324) |
-0.187 (-0.214, -0.169) |
0.00313 (0.00308, 0.00318) |
0.441 (0.426, 0.458) |
-0.826 (-0.892, -0.773) |
0.00923 (0.00909, 0.00938) |
0.314 (0.299, 0.328) |
-0.172 (-0.237, -0.105) |
0.00144 (0.00142, 0.00148) |
0.452 (0.432, 0.472) |
-0.849 (-0.923, -0.762) |
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BGS |
140 |
X |
1 |
1 |
203.340 (199.410, 209.165) |
218.490 (212.060, 227.300) |
0.01166 (0.01154, 0.01183) |
0.282 (0.275, 0.287) |
0.009 (-0.032, 0.056) |
0.00397 (0.00387, 0.00409) |
0.412 (0.405, 0.422) |
-0.623 (-0.659, -0.584) |
0.01119 (0.01101, 0.01136) |
0.291 (0.283, 0.300) |
-0.024 (-0.093, 0.053) |
0.00165 (0.00162, 0.00170) |
0.426 (0.419, 0.433) |
-0.722 (-0.750, -0.688) |
|
|
|
|
|
|
|
SSW |
140 |
X |
1 |
1 |
- |
- |
0.01084 (0.01074, 0.01094) |
0.326 (0.323, 0.330) |
-0.255 (-0.276, -0.239) |
0.00987 (0.00952, 0.01016) |
0.346 (0.337, 0.354) |
-0.370 (-0.403, -0.336) |
0.01082 (0.01052, 0.01119) |
0.323 (0.319, 0.327) |
-0.253 (-0.266, -0.239) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
X |
1 |
1 |
246.170 (235.190, 259.800) |
242.190 (233.080, 248.940) |
0.00823 (0.00807, 0.00839) |
0.324 (0.318, 0.331) |
-0.219 (-0.253, -0.195) |
0.00295 (0.00287, 0.00302) |
0.447 (0.443, 0.451) |
-0.816 (-0.858, -0.778) |
0.00835 (0.00817, 0.00854) |
0.314 (0.312, 0.317) |
-0.188 (-0.199, -0.177) |
0.00133 (0.00128, 0.00139) |
0.463 (0.451, 0.480) |
-0.879 (-0.919, -0.840) |
|
|
|
|
|
|
|
BGS |
210 |
X |
1 |
1 |
287.720 (283.640, 291.990) |
301.640 (296.770, 306.740) |
0.01027 (0.01013, 0.01047) |
0.289 (0.280, 0.299) |
-0.042 (-0.082, -0.006) |
0.00363 (0.00357, 0.00372) |
0.410 (0.404, 0.416) |
-0.661 (-0.711, -0.616) |
0.01026 (0.01015, 0.01036) |
0.293 (0.285, 0.299) |
-0.078 (-0.134, -0.033) |
0.00156 (0.00154, 0.00159) |
0.439 (0.428, 0.449) |
-0.759 (-0.784, -0.735) |
|
|
|
|
|
|
|
SSW |
210 |
X |
1 |
1 |
- |
- |
0.01079 (0.01062, 0.01096) |
0.324 (0.321, 0.328) |
-0.242 (-0.255, -0.229) |
0.00970 (0.00946, 0.00994) |
0.343 (0.337, 0.351) |
-0.342 (-0.397, -0.303) |
0.01099 (0.01077, 0.01126) |
0.324 (0.317, 0.333) |
-0.225 (-0.286, -0.175) |
- |
- |
- |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
BGS-SSW |
70 |
A |
1 |
1 |
124.390 (120.620, 127.920) |
115.790 (108.750, 122.850) |
0.01285 (0.01250, 0.01308) |
0.326 (0.317, 0.338) |
-0.183 (-0.224, -0.145) |
0.00429 (0.00411, 0.00450) |
0.460 (0.440, 0.479) |
-0.864 (-0.946, -0.779) |
0.01274 (0.01247, 0.01301) |
0.309 (0.296, 0.326) |
-0.134 (-0.233, -0.009) |
0.00208 (0.00202, 0.00213) |
0.451 (0.434, 0.473) |
-0.794 (-0.882, -0.718) |
|
|
|
|
|
|
|
BGS |
70 |
A |
1 |
1 |
143.530 (140.180, 146.120) |
137.730 (134.260, 141.130) |
0.01525 (0.01505, 0.01550) |
0.292 (0.281, 0.303) |
-0.063 (-0.096, -0.030) |
0.00509 (0.00496, 0.00519) |
0.418 (0.400, 0.436) |
-0.663 (-0.718, -0.610) |
0.01526 (0.01471, 0.01581) |
0.285 (0.270, 0.299) |
-0.002 (-0.078, 0.072) |
0.00230 (0.00224, 0.00234) |
0.426 (0.410, 0.455) |
-0.675 (-0.757, -0.619) |
|
|
|
|
|
|
|
SSW |
70 |
A |
1 |
1 |
- |
- |
0.01578 (0.01559, 0.01603) |
0.301 (0.294, 0.307) |
-0.115 (-0.145, -0.085) |
0.01391 (0.01377, 0.01405) |
0.330 (0.321, 0.339) |
-0.294 (-0.311, -0.277) |
0.01626 (0.01592, 0.01662) |
0.302 (0.290, 0.317) |
-0.118 (-0.145, -0.083) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
140 |
A |
1 |
1 |
235.680 (228.550, 240.210) |
220.180 (209.360, 231.000) |
0.01166 (0.01152, 0.01179) |
0.305 (0.299, 0.310) |
-0.141 (-0.162, -0.122) |
0.00401 (0.00384, 0.00417) |
0.433 (0.421, 0.445) |
-0.779 (-0.821, -0.737) |
0.01184 (0.01161, 0.01205) |
0.297 (0.290, 0.304) |
-0.059 (-0.119, -0.016) |
0.00191 (0.00186, 0.00196) |
0.438 (0.426, 0.454) |
-0.749 (-0.806, -0.702) |
|
|
|
|
|
|
|
BGS |
140 |
A |
1 |
1 |
251.020 (244.380, 259.260) |
249.820 (244.130, 254.590) |
0.01339 (0.01314, 0.01365) |
0.292 (0.287, 0.297) |
-0.074 (-0.106, -0.043) |
0.00449 (0.00442, 0.00456) |
0.418 (0.406, 0.430) |
-0.669 (-0.735, -0.591) |
0.01313 (0.01290, 0.01341) |
0.287 (0.281, 0.295) |
-0.016 (-0.052, 0.018) |
0.00202 (0.00198, 0.00208) |
0.436 (0.413, 0.464) |
-0.737 (-0.808, -0.668) |
|
|
|
|
|
|
|
SSW |
140 |
A |
1 |
1 |
- |
- |
0.01552 (0.01529, 0.01590) |
0.298 (0.294, 0.302) |
-0.121 (-0.142, -0.091) |
0.01405 (0.01377, 0.01436) |
0.318 (0.306, 0.330) |
-0.220 (-0.269, -0.174) |
0.01600 (0.01561, 0.01655) |
0.299 (0.294, 0.303) |
-0.105 (-0.138, -0.066) |
- |
- |
- |
|
|
|
|
|
|
|
|
BGS-SSW |
210 |
A |
1 |
1 |
315.670 (300.110, 331.950) |
309.020 (298.600, 318.380) |
0.01028 (0.01019, 0.01035) |
0.304 (0.291, 0.317) |
-0.139 (-0.188, -0.087) |
0.00378 (0.00370, 0.00386) |
0.437 (0.423, 0.449) |
-0.751 (-0.794, -0.705) |
0.01032 (0.01016, 0.01051) |
0.301 (0.294, 0.308) |
-0.113 (-0.143, -0.089) |
0.00171 (0.00164, 0.00179) |
0.444 (0.436, 0.452) |
-0.790 (-0.815, -0.765) |
|
|
|
|
|
|
|
BGS |
210 |
A |
1 |
1 |
334.260 (322.344, 342.990) |
338.300 (331.120, 345.479) |
0.01147 (0.01118, 0.01181) |
0.297 (0.291, 0.302) |
-0.049 (-0.089, -0.007) |
0.00407 (0.00400, 0.00415) |
0.408 (0.403, 0.415) |
-0.671 (-0.702, -0.636) |
0.01165 (0.01133, 0.01193) |
0.284 (0.281, 0.287) |
0.003 (-0.028, 0.035) |
0.00184 (0.00179, 0.00187) |
0.437 (0.432, 0.441) |
-0.739 (-0.771, -0.708) |
|
|
|
|
|
|
|
SSW |
210 |
A |
1 |
1 |
- |
- |
0.01542 (0.01530, 0.01552) |
0.304 (0.299, 0.309) |
-0.128 (-0.141, -0.118) |
0.01397 (0.01382, 0.01412) |
0.320 (0.315, 0.327) |
-0.231 (-0.251, -0.205) |
0.01558 (0.01507, 0.01612) |
0.305 (0.295, 0.314) |
-0.145 (-0.213, -0.078) |
- |
- |
- |
|
|
|
|
|
|
|
|
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