FastQCFastQC Report
Mon 27 Nov 2017
RJNT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJNT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 25044411
Filtered Sequences 0
Sequence length 150
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 79129 0.3159547253876324 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 26735545 4.920134 7.6940956 2
AAAAA 22262985 3.5846808 4.8415003 145-146
GGGAA 4395875 1.3792492 5.1181993 1
GGGAG 3121870 1.2234577 5.2156296 1
GCCAG 3145675 1.214639 5.204311 1
GGGGA 3043645 1.1928015 5.6050615 1
GCCGG 2417410 1.1658978 5.016262 1