Basic Statistics
Measure | Value |
---|---|
Filename | RXTT_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24320339 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 68528 | 0.2817723881233728 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 25069785 | 4.0945425 | 6.8712125 | 2 |
GGAAG | 6317730 | 2.1610742 | 5.6398597 | 1 |
GGAAA | 6079815 | 1.5462167 | 5.3338456 | 1 |
GGGAA | 4318605 | 1.4772435 | 5.7863626 | 1 |
GCCAA | 4358000 | 1.4626529 | 5.00251 | 1 |
GGGAG | 2757920 | 1.2688751 | 5.6084814 | 1 |
GGGGA | 2690525 | 1.2378677 | 6.0258613 | 1 |
GCCAG | 2688025 | 1.2134335 | 5.63763 | 1 |
GCCGG | 1684770 | 1.0229441 | 5.033478 | 1 |