Basic Statistics
Measure | Value |
---|---|
Filename | LNN_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21842230 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 53817 | 0.2463896772444938 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 52201 | 0.2389911652793694 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 17680270 | 4.5485916 | 6.9446783 | 2 |
GGGAA | 5929805 | 1.948283 | 5.5319595 | 1 |
CGGGG | 2932920 | 1.2395097 | 5.650313 | 1 |
GCGGG | 2167385 | 0.91597956 | 5.2548933 | 1 |