Basic Statistics
Measure | Value |
---|---|
Filename | RJTN_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29720079 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAAGA | 12123375 | 2.5686717 | 5.307659 | 2 |
TCTTC | 11500280 | 2.5436444 | 5.0754724 | 7 |
GGAAG | 7849905 | 2.2170901 | 6.20558 | 1 |
AAAAA | 15487170 | 1.8466693 | 5.01127 | 2 |
TCCAA | 8616450 | 1.779263 | 5.1635647 | 7 |
GAAAA | 10468885 | 1.663993 | 5.4410014 | 1 |
GGAAA | 7352130 | 1.5577514 | 6.238224 | 1 |
GGGAA | 5277740 | 1.49062 | 6.078961 | 1 |
GCCAA | 5348510 | 1.4225268 | 5.62935 | 1 |
GGGAG | 3449890 | 1.2988476 | 5.5965676 | 1 |
GGGGA | 3287340 | 1.2376492 | 5.762328 | 1 |
GCCAG | 3233905 | 1.1465389 | 5.587091 | 1 |