Basic Statistics
Measure | Value |
---|---|
Filename | LNN_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21842230 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC | 53322 | 0.2441234251264637 | TruSeq Adapter, Index 7 (100% over 50bp) |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35817 | 0.1639805093161275 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 12086255 | 3.1633263 | 6.1510224 | 2 |
GGGAA | 5356325 | 1.7875243 | 6.13795 | 1 |
GGAAA | 5487915 | 1.6005515 | 5.0014977 | 1 |
CGGGG | 2790885 | 1.2171719 | 5.349396 | 1 |
GCGGG | 2042935 | 0.890973 | 5.490026 | 1 |