FastQCFastQC Report
Mon 27 Nov 2017
RJTT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJTT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24275828
Filtered Sequences 0
Sequence length 150
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 98792 0.4069562529442868 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 33561690 5.891196 8.4222355 2
AAAAA 16986465 2.7777934 6.687319 2
GAAGA 9506345 2.4919627 5.1356907 2
AAGAA 10719290 2.2193637 5.041534 2
GGAAG 6284920 2.0858994 5.699283 1
GAAAA 8270330 1.7123214 6.0313015 1
TCCAA 6318650 1.6632782 5.198206 7
GGAAA 6090265 1.5964828 6.1889977 1
GGGAA 4571090 1.5170969 5.511413 1
GCCAA 4388680 1.442074 5.0716143 1
GGGGA 2851960 1.198402 5.071076 1