FastQCFastQC Report
Mon 27 Nov 2017
LTN_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LTN_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 21768842
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 69580 0.3196311498792632 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 22914730 4.1481605 6.6485457 2
GGAAG 5846210 2.211047 5.5938787 1
AAAAA 13371160 2.132445 5.034685 2
TCCAA 5986215 1.7392956 5.097017 7
GAAAA 7759475 1.650236 5.28031 1
GGAAA 5787675 1.6414316 6.035679 1
GGGAA 4291800 1.6231663 6.071546 1
GCCAA 3860020 1.4581735 5.4916377 1
GGGAG 2711995 1.3677835 5.7553596 1
GGGGA 2581195 1.3018152 5.8673577 1
GCCAG 2380775 1.1993417 5.658161 1
CGGGG 1123895 0.7554525 5.0254693 1