FastQCFastQC Report
Mon 27 Nov 2017
LTT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LTT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 23977101
Filtered Sequences 0
Sequence length 150
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 90929 0.3792326687033599 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 26866905 5.508365 7.7387033 2
AAAAA 14229570 2.7209544 5.0224237 2
GGGAA 5615355 1.7756946 5.6014695 1
GGAAA 6462625 1.7281423 5.2299085 1
GGGAG 3548810 1.3270715 5.1396136 1
GGGGA 3505875 1.311016 5.23029 1
CGGGG 2577925 1.1447266 6.0661263 1
GCGGG 1836825 0.81564146 5.069159 1