FastQCFastQC Report
Mon 27 Nov 2017
RXTN_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXTN_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 22470944
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41952 0.18669442636677835 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 16596645 3.0894215 5.831141 2
GGAAG 5983465 2.1805537 5.887386 1
GGAAA 5577380 1.5283802 5.692692 1
GCCAA 4131790 1.469146 5.3982244 1
GGGAA 4020165 1.4650683 5.962814 1
GGGAG 2613420 1.2665901 5.6056275 1
GGGGA 2533285 1.2277528 5.9435515 1
GCCAG 2487680 1.1763432 5.6074963 1