FastQCFastQC Report
Mon 27 Nov 2017
RJNT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJNT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 25044411
Filtered Sequences 0
Sequence length 150
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 135987 0.5429834225288828 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 41619750 7.3430724 9.2665205 2
AAAAA 20710375 3.4804564 4.8929534 2
CGGCG 3512840 1.6840372 5.21279 1
GGGAG 3267385 1.264485 5.035013 1
GGGGA 3189955 1.2345195 5.5319843 1
GCCAG 3157560 1.2287928 5.187014 1
GCCGG 2479340 1.1885827 5.268469 1