FastQCFastQC Report
Mon 27 Nov 2017
RXNT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXNT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24394478
Filtered Sequences 0
Sequence length 150
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 80497 0.3299804160597329 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 26918050 6.4031186 9.587099 2
AAAAA 23843695 5.1062593 7.2143483 145-146
CGGCG 4596175 1.7123778 5.1255083 1
GCGGC 4050600 1.5091153 5.1976876 1
GCCGG 3149095 1.1732452 5.044034 1
GCGGG 2556170 0.96067727 5.4403763 1