Basic Statistics
Measure | Value |
---|---|
Filename | RXTN_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22470944 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 41952 | 0.18669442636677835 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 16596645 | 3.0894215 | 5.831141 | 2 |
GGAAG | 5983465 | 2.1805537 | 5.887386 | 1 |
GGAAA | 5577380 | 1.5283802 | 5.692692 | 1 |
GCCAA | 4131790 | 1.469146 | 5.3982244 | 1 |
GGGAA | 4020165 | 1.4650683 | 5.962814 | 1 |
GGGAG | 2613420 | 1.2665901 | 5.6056275 | 1 |
GGGGA | 2533285 | 1.2277528 | 5.9435515 | 1 |
GCCAG | 2487680 | 1.1763432 | 5.6074963 | 1 |