FastQCFastQC Report
Mon 27 Nov 2017
RXTN_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXTN_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 22470944
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 74020 0.32940316170072786 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 24802420 4.5197124 6.6492853 2
GGAAG 6011190 2.1736434 5.479281 1
GAAAA 8032075 1.6786753 5.0764484 1
GGAAA 5814890 1.5985451 5.5698833 1
GGGAA 4346695 1.5717629 5.485092 1
GCCAA 4079365 1.4702312 5.1529236 1
GGGAG 2711280 1.2895752 5.278951 1
GGGGA 2652075 1.2614152 5.807055 1
GCCAG 2489935 1.18039 5.4384947 1