Basic Statistics
Measure | Value |
---|---|
Filename | RXTN_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22470944 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 74020 | 0.32940316170072786 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 24802420 | 4.5197124 | 6.6492853 | 2 |
GGAAG | 6011190 | 2.1736434 | 5.479281 | 1 |
GAAAA | 8032075 | 1.6786753 | 5.0764484 | 1 |
GGAAA | 5814890 | 1.5985451 | 5.5698833 | 1 |
GGGAA | 4346695 | 1.5717629 | 5.485092 | 1 |
GCCAA | 4079365 | 1.4702312 | 5.1529236 | 1 |
GGGAG | 2711280 | 1.2895752 | 5.278951 | 1 |
GGGGA | 2652075 | 1.2614152 | 5.807055 | 1 |
GCCAG | 2489935 | 1.18039 | 5.4384947 | 1 |