FastQCFastQC Report
Mon 27 Nov 2017
LTN_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LTN_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 21768842
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51120 0.23483104889088727 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 16765510 3.0833204 6.164277 2
GGAAG 5838280 2.2223077 6.019954 1
TCCAA 6098560 1.7494155 5.1229005 7
GAAAA 7853080 1.6440645 5.0249696 1
GGAAA 5586650 1.5770684 6.151847 1
GGGAA 4008750 1.5259076 6.34766 1
GCCAA 3900605 1.4585093 5.633114 1
GGGAG 2620490 1.3449988 6.095157 1
GGGGA 2484840 1.2753748 5.944097 1
GCCAG 2372590 1.196245 5.9489784 1