Basic Statistics
Measure | Value |
---|---|
Filename | LTT_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23977101 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 59082 | 0.24641010604242775 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 17487345 | 3.676165 | 6.586694 | 2 |
GGGAA | 5227605 | 1.6586674 | 5.9275227 | 1 |
GGAAA | 6159425 | 1.6328888 | 5.3600984 | 1 |
GGGAG | 3438725 | 1.3058522 | 5.4066863 | 1 |
GGGGA | 3378375 | 1.2829343 | 5.2891617 | 1 |
CGGGG | 2460795 | 1.1129894 | 5.8978176 | 1 |
GCGGG | 1710710 | 0.7737345 | 5.142223 | 1 |