Basic Statistics
Measure | Value |
---|---|
Filename | RJTT_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24275828 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 60443 | 0.2489842982904641 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 22117380 | 4.018403 | 7.3793616 | 2 |
AAAAA | 18001380 | 2.8139174 | 5.7535877 | 2 |
GAAGA | 9629920 | 2.4871125 | 5.1739197 | 2 |
GGAAG | 6260660 | 2.078387 | 6.0278487 | 1 |
GAAAA | 8441130 | 1.696054 | 5.6978526 | 1 |
TCCAA | 6487240 | 1.6780207 | 5.324309 | 7 |
GGAAA | 5842395 | 1.5089109 | 6.223404 | 1 |
GCCAA | 4459800 | 1.4388765 | 5.363812 | 1 |
GGGAA | 4212005 | 1.3982836 | 5.904882 | 1 |
GCCAG | 2896260 | 1.2011002 | 5.160031 | 1 |
GGGGA | 2703465 | 1.1536145 | 5.1269393 | 1 |