FastQCFastQC Report
Mon 27 Nov 2017
RJTN_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJTN_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 29720079
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30814 0.10368074728199746 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GAAGA 12056590 2.5175016 5.096534 2
GGAAG 7984390 2.1773176 5.6373043 1
AAAAA 15422045 1.888068 5.5000134 2
TCCAA 8342805 1.7733521 5.1273665 7
GAAAA 10325060 1.6508325 5.562523 1
GGAAA 7753830 1.6190547 6.133402 1
GGGAA 5843345 1.5934616 5.78401 1
GCCAA 5250330 1.4177448 5.4942565 1
GGGAG 3727140 1.3273656 5.3295207 1
GGGGA 3599805 1.2820172 6.033242 1
GCCAG 3243945 1.1439834 5.438539 1