FastQCFastQC Report
Mon 27 Nov 2017
RXNN_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXNN_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 25213603
Filtered Sequences 0
Sequence length 150
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 94663 0.3754441600432909 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 30421590 5.62475 7.188861 2
GCCAG 3243880 1.2066373 5.0453944 1
GGGGA 3199515 1.1808513 5.4321947 1
GCCGG 2413725 1.0828215 5.357653 1
GCGGG 1766620 0.78942674 5.1724706 1