FastQCFastQC Report
Mon 27 Nov 2017
LTT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LTT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 23977101
Filtered Sequences 0
Sequence length 150
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 59082 0.24641010604242775 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 17487345 3.676165 6.586694 2
GGGAA 5227605 1.6586674 5.9275227 1
GGAAA 6159425 1.6328888 5.3600984 1
GGGAG 3438725 1.3058522 5.4066863 1
GGGGA 3378375 1.2829343 5.2891617 1
CGGGG 2460795 1.1129894 5.8978176 1
GCGGG 1710710 0.7737345 5.142223 1