Basic Statistics
Measure | Value |
---|---|
Filename | LNT_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24427969 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAAAG | 34100 | 0.13959408577929666 | No Hit |
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA | 33031 | 0.13521795446850288 | No Hit |
GGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAA | 29556 | 0.12099245745726957 | No Hit |
CTGCAAAGGATTCTACCCGCCGCTCGATGGGAATTGCGCTTCAAGGCGTC | 29182 | 0.11946142554872245 | No Hit |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 28446 | 0.11644848575008426 | TruSeq Adapter, Index 12 (100% over 50bp) |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGAA | 6888985 | 1.9186178 | 6.210059 | 1 |
GAAAA | 6909840 | 1.9013505 | 5.154547 | 2 |
GTCGG | 5176220 | 1.4900256 | 5.39532 | 1 |
CGGGG | 4417665 | 1.2483773 | 5.006928 | 1 |
GCGGG | 3158750 | 0.8926236 | 5.1139092 | 1 |