FastQCFastQC Report
Mon 27 Nov 2017
RXNT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXNT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24394478
Filtered Sequences 0
Sequence length 150
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 146408 0.6001686119293064 No Hit

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 43657935 9.788586 11.755042 2
AAAAA 21052150 4.771949 6.4881263 2
CGGCG 4683875 1.7377746 5.446342 1
GCGGC 4144580 1.5376896 5.146071 1
GCCGG 3235515 1.2004155 5.266667 1
GCGGG 2723980 1.0091466 5.592053 1