FastQCFastQC Report
Mon 27 Nov 2017
LNT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LNT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24427969
Filtered Sequences 0
Sequence length 150
%GC 50

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50376 0.2062226294785293 No Hit
AAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAAAG 35657 0.1459679271739701 No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 34157 0.13982742486696295 No Hit
CTGCAAAGGATTCTACCCGCCGCTCGATGGGAATTGCGCTTCAAGGCGTC 29550 0.12096789544804155 No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG 28618 0.11715259668128775 Illumina Single End PCR Primer 1 (100% over 50bp)
GGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAA 28571 0.11696019427566819 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 15681555 4.7282634 5.820162 2
AAAAG 7676660 2.1564217 5.395433 3
GGGAA 7391320 2.0492241 5.720906 1
GAAAA 6848175 1.9236952 5.7576485 2
GAAAT 5269055 1.4992532 5.1247025 3
GTCGG 5211440 1.4725716 5.0932207 1
CGGGG 4510750 1.2500851 5.180408 1