FastQCFastQC Report
Mon 27 Nov 2017
RXTT_combine_R2.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXTT_combine_R2.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24320339
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 106124 0.4363590491070046 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 36227155 5.73196 7.799755 2
GGAAG 6327000 2.153922 5.2986445 1
GGAAA 6321355 1.6235505 5.3500066 1
GGGAA 4662550 1.5872877 5.400341 1
GGGAG 2887460 1.3029408 5.281154 1
GGGGA 2849070 1.2856177 6.013476 1
GCCAG 2691525 1.2192389 5.4667406 1
GCCGG 1742640 1.0463442 5.250284 1