Basic Statistics
Measure | Value |
---|---|
Filename | RJTT_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24275828 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 98792 | 0.4069562529442868 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 33561690 | 5.891196 | 8.4222355 | 2 |
AAAAA | 16986465 | 2.7777934 | 6.687319 | 2 |
GAAGA | 9506345 | 2.4919627 | 5.1356907 | 2 |
AAGAA | 10719290 | 2.2193637 | 5.041534 | 2 |
GGAAG | 6284920 | 2.0858994 | 5.699283 | 1 |
GAAAA | 8270330 | 1.7123214 | 6.0313015 | 1 |
TCCAA | 6318650 | 1.6632782 | 5.198206 | 7 |
GGAAA | 6090265 | 1.5964828 | 6.1889977 | 1 |
GGGAA | 4571090 | 1.5170969 | 5.511413 | 1 |
GCCAA | 4388680 | 1.442074 | 5.0716143 | 1 |
GGGGA | 2851960 | 1.198402 | 5.071076 | 1 |