Basic Statistics
Measure | Value |
---|---|
Filename | LTN_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21768842 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 69580 | 0.3196311498792632 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 22914730 | 4.1481605 | 6.6485457 | 2 |
GGAAG | 5846210 | 2.211047 | 5.5938787 | 1 |
AAAAA | 13371160 | 2.132445 | 5.034685 | 2 |
TCCAA | 5986215 | 1.7392956 | 5.097017 | 7 |
GAAAA | 7759475 | 1.650236 | 5.28031 | 1 |
GGAAA | 5787675 | 1.6414316 | 6.035679 | 1 |
GGGAA | 4291800 | 1.6231663 | 6.071546 | 1 |
GCCAA | 3860020 | 1.4581735 | 5.4916377 | 1 |
GGGAG | 2711995 | 1.3677835 | 5.7553596 | 1 |
GGGGA | 2581195 | 1.3018152 | 5.8673577 | 1 |
GCCAG | 2380775 | 1.1993417 | 5.658161 | 1 |
CGGGG | 1123895 | 0.7554525 | 5.0254693 | 1 |