Basic Statistics
Measure | Value |
---|---|
Filename | RXTT_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24320339 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 106124 | 0.4363590491070046 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 36227155 | 5.73196 | 7.799755 | 2 |
GGAAG | 6327000 | 2.153922 | 5.2986445 | 1 |
GGAAA | 6321355 | 1.6235505 | 5.3500066 | 1 |
GGGAA | 4662550 | 1.5872877 | 5.400341 | 1 |
GGGAG | 2887460 | 1.3029408 | 5.281154 | 1 |
GGGGA | 2849070 | 1.2856177 | 6.013476 | 1 |
GCCAG | 2691525 | 1.2192389 | 5.4667406 | 1 |
GCCGG | 1742640 | 1.0463442 | 5.250284 | 1 |