FastQCFastQC Report
Mon 27 Nov 2017
RJTN_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJTN_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 29720079
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GAAGA 12123375 2.5686717 5.307659 2
TCTTC 11500280 2.5436444 5.0754724 7
GGAAG 7849905 2.2170901 6.20558 1
AAAAA 15487170 1.8466693 5.01127 2
TCCAA 8616450 1.779263 5.1635647 7
GAAAA 10468885 1.663993 5.4410014 1
GGAAA 7352130 1.5577514 6.238224 1
GGGAA 5277740 1.49062 6.078961 1
GCCAA 5348510 1.4225268 5.62935 1
GGGAG 3449890 1.2988476 5.5965676 1
GGGGA 3287340 1.2376492 5.762328 1
GCCAG 3233905 1.1465389 5.587091 1