Basic Statistics
Measure | Value |
---|---|
Filename | RJTN_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29720079 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30814 | 0.10368074728199746 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAAGA | 12056590 | 2.5175016 | 5.096534 | 2 |
GGAAG | 7984390 | 2.1773176 | 5.6373043 | 1 |
AAAAA | 15422045 | 1.888068 | 5.5000134 | 2 |
TCCAA | 8342805 | 1.7733521 | 5.1273665 | 7 |
GAAAA | 10325060 | 1.6508325 | 5.562523 | 1 |
GGAAA | 7753830 | 1.6190547 | 6.133402 | 1 |
GGGAA | 5843345 | 1.5934616 | 5.78401 | 1 |
GCCAA | 5250330 | 1.4177448 | 5.4942565 | 1 |
GGGAG | 3727140 | 1.3273656 | 5.3295207 | 1 |
GGGGA | 3599805 | 1.2820172 | 6.033242 | 1 |
GCCAG | 3243945 | 1.1439834 | 5.438539 | 1 |