Basic Statistics
Measure | Value |
---|---|
Filename | RXNN_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25213603 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 53439 | 0.21194511549975623 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 19388230 | 3.7027965 | 5.8708134 | 2 |
AAAAA | 18297095 | 3.0636418 | 3.8634198 | 145-146 |
GCCAG | 3242260 | 1.2015615 | 5.16929 | 1 |
GGGAG | 3140615 | 1.1834826 | 5.1577125 | 1 |
GGGGA | 3030890 | 1.1421348 | 5.48476 | 1 |
GCCGG | 2354640 | 1.0687976 | 5.1963253 | 1 |
GCGGG | 1606345 | 0.7352488 | 5.171256 | 1 |