Basic Statistics
Measure | Value |
---|---|
Filename | RJNT_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25044411 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 79129 | 0.3159547253876324 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 26735545 | 4.920134 | 7.6940956 | 2 |
AAAAA | 22262985 | 3.5846808 | 4.8415003 | 145-146 |
GGGAA | 4395875 | 1.3792492 | 5.1181993 | 1 |
GGGAG | 3121870 | 1.2234577 | 5.2156296 | 1 |
GCCAG | 3145675 | 1.214639 | 5.204311 | 1 |
GGGGA | 3043645 | 1.1928015 | 5.6050615 | 1 |
GCCGG | 2417410 | 1.1658978 | 5.016262 | 1 |