FastQCFastQC Report
Mon 27 Nov 2017
RXNN_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXNN_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 25213603
Filtered Sequences 0
Sequence length 150
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53439 0.21194511549975623 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 19388230 3.7027965 5.8708134 2
AAAAA 18297095 3.0636418 3.8634198 145-146
GCCAG 3242260 1.2015615 5.16929 1
GGGAG 3140615 1.1834826 5.1577125 1
GGGGA 3030890 1.1421348 5.48476 1
GCCGG 2354640 1.0687976 5.1963253 1
GCGGG 1606345 0.7352488 5.171256 1