Basic Statistics
Measure | Value |
---|---|
Filename | LTN_combine_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21768842 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 51120 | 0.23483104889088727 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 16765510 | 3.0833204 | 6.164277 | 2 |
GGAAG | 5838280 | 2.2223077 | 6.019954 | 1 |
TCCAA | 6098560 | 1.7494155 | 5.1229005 | 7 |
GAAAA | 7853080 | 1.6440645 | 5.0249696 | 1 |
GGAAA | 5586650 | 1.5770684 | 6.151847 | 1 |
GGGAA | 4008750 | 1.5259076 | 6.34766 | 1 |
GCCAA | 3900605 | 1.4585093 | 5.633114 | 1 |
GGGAG | 2620490 | 1.3449988 | 6.095157 | 1 |
GGGGA | 2484840 | 1.2753748 | 5.944097 | 1 |
GCCAG | 2372590 | 1.196245 | 5.9489784 | 1 |