Basic Statistics
Measure | Value |
---|---|
Filename | LNT_combine_R2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24427969 |
Filtered Sequences | 0 |
Sequence length | 150 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 50376 | 0.2062226294785293 | No Hit |
AAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAAAG | 35657 | 0.1459679271739701 | No Hit |
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA | 34157 | 0.13982742486696295 | No Hit |
CTGCAAAGGATTCTACCCGCCGCTCGATGGGAATTGCGCTTCAAGGCGTC | 29550 | 0.12096789544804155 | No Hit |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 28618 | 0.11715259668128775 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAA | 28571 | 0.11696019427566819 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 15681555 | 4.7282634 | 5.820162 | 2 |
AAAAG | 7676660 | 2.1564217 | 5.395433 | 3 |
GGGAA | 7391320 | 2.0492241 | 5.720906 | 1 |
GAAAA | 6848175 | 1.9236952 | 5.7576485 | 2 |
GAAAT | 5269055 | 1.4992532 | 5.1247025 | 3 |
GTCGG | 5211440 | 1.4725716 | 5.0932207 | 1 |
CGGGG | 4510750 | 1.2500851 | 5.180408 | 1 |