FastQCFastQC Report
Mon 27 Nov 2017
LNT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename LNT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24427969
Filtered Sequences 0
Sequence length 150
%GC 50

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
AAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAAAG 34100 0.13959408577929666 No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 33031 0.13521795446850288 No Hit
GGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAA 29556 0.12099245745726957 No Hit
CTGCAAAGGATTCTACCCGCCGCTCGATGGGAATTGCGCTTCAAGGCGTC 29182 0.11946142554872245 No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC 28446 0.11644848575008426 TruSeq Adapter, Index 12 (100% over 50bp)

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GGGAA 6888985 1.9186178 6.210059 1
GAAAA 6909840 1.9013505 5.154547 2
GTCGG 5176220 1.4900256 5.39532 1
CGGGG 4417665 1.2483773 5.006928 1
GCGGG 3158750 0.8926236 5.1139092 1