FastQCFastQC Report
Mon 27 Nov 2017
RXTT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RXTT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24320339
Filtered Sequences 0
Sequence length 150
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 68528 0.2817723881233728 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 25069785 4.0945425 6.8712125 2
GGAAG 6317730 2.1610742 5.6398597 1
GGAAA 6079815 1.5462167 5.3338456 1
GGGAA 4318605 1.4772435 5.7863626 1
GCCAA 4358000 1.4626529 5.00251 1
GGGAG 2757920 1.2688751 5.6084814 1
GGGGA 2690525 1.2378677 6.0258613 1
GCCAG 2688025 1.2134335 5.63763 1
GCCGG 1684770 1.0229441 5.033478 1