FastQCFastQC Report
Mon 27 Nov 2017
RJNN_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJNN_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 27370562
Filtered Sequences 0
Sequence length 150
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47849 0.17481920904656617 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 17487825 3.7086053 6.598766 2
AAAAA 17136345 3.1610963 4.135213 145-146
GGGAA 5438535 1.4624307 5.01826 1
GCGGG 2614695 0.8946976 5.1955214 1