FastQCFastQC Report
Mon 27 Nov 2017
RJTT_combine_R1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename RJTT_combine_R1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 24275828
Filtered Sequences 0
Sequence length 150
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60443 0.2489842982904641 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 22117380 4.018403 7.3793616 2
AAAAA 18001380 2.8139174 5.7535877 2
GAAGA 9629920 2.4871125 5.1739197 2
GGAAG 6260660 2.078387 6.0278487 1
GAAAA 8441130 1.696054 5.6978526 1
TCCAA 6487240 1.6780207 5.324309 7
GGAAA 5842395 1.5089109 6.223404 1
GCCAA 4459800 1.4388765 5.363812 1
GGGAA 4212005 1.3982836 5.904882 1
GCCAG 2896260 1.2011002 5.160031 1
GGGGA 2703465 1.1536145 5.1269393 1