Supplemental Material for Brock et al., 2020

Supplemental Figures and Tables from: A nested association mapping panel in Arabidopsis thaliana for mapping and characterizing genetic architecture. Materials include:

Fig. S1. Linkage maps (left) and linkage disequilibrium plots (right) for remaining 13 Arabidopsis thaliana RIL populations (population identified top left). Linkage maps were generated using both original INRA and newly identified GBS SNPs (see Figure 1 for remaining population of 14 total RIL sets). Linkage disequilibrium plots of intra- and inter-chromosomal LD as measured by SNP-SNP Pearson product moment correlation coefficients (r2; top right of diagonal) with associated significance tests (p-value; lower left of diagonal). See Table 1 for SNP numbers, interval metrics, and missing data pre- and post-imputations for each population.

Fig. S2. Joint-linkage map (left) and linkage disequilibrium plot (right) for Arabidopsis thaliana NAM population comprised of 14 RIL sets that share a common recurrent parent (Col-0). Linkage maps were generated using imputed SNPs where at least 11 of the 14 non-recurrent parents share a common allele. Linkage disequilibrium plots of intra- and inter-chromosomal LD as measured by SNP-SNP Pearson product moment correlation coefficients (r2; top right of diagonal) with associated significance tests (p-value; lower left of diagonal).

Table S1. Oligonucleotide sequences for custom adapters that are described in the methods.