Supplemental Material for de Souza et al., 2021

dataset

posted on 2021-08-31, 17:48 authored by Vander Fillipe de Souza, Guilherme da Silva Pereira, Maria Marta Pastina, Rafael Augusto da Costa Parrella, Maria Lúcia Ferreira Simeone, Beatriz de Almeida Barros, Roberto Willians Noda, Luciano da Costa e Silva, Jurandir Vieira Magalhães, Robert Eugene Schaffert, Antonio Augusto Franco Garcia, Cynthia Maria Borges Damasceno

Supplementary File S1. Imputed genotype of Brandes × Wray sweet sorghum recombinant inbred lines for physical map-based analyses. (TXT)

Supplementary File S2. Non-imputed genotype of Brandes × Wray sweet sorghum recombinant inbred lines for genetic map-based analyses. (TXT)

Supplementary File S3. Phenotypic adjusted means for Brandes × Wray sweet sorghum recombinant inbred lines from each trial (T1, T2, T3). (XLSX)

Supplementary File S4. Marker distances from each chromosome of the genetic map for Brandes × Wray sweet sorghum recombinant inbred lines. (XLSX)

Supplementary File S5. Heatmaps of LOD scores (above diagonal) and recombination fractions (below diagonal) between pairs of markers from each chromosome of the genetic map for Brandes × Wray sweet sorghum recombinant inbred lines. (PDF)

Supplementary File S6. Physical map-based multiple interval mapping for individual (T1, T2, T3) and multiple trials (MT) for Brandes × Wray sweet sorghum recombinant inbred lines using a mapping window size of 100 kbp. (XLSX)

Supplementary File S7. Physical map-based multiple interval mapping for individual (T1, T2, T3) and multiple trials (MT) for Brandes × Wray sweet sorghum recombinant inbred lines using a mapping window size of 200 kbp. (PDF)

Supplementary File S8. Genetic map-based multiple interval mapping for individual (T1, T2, T3) and multiple trials (MT) for Brandes × Wray sweet sorghum recombinant inbred lines. (XLSX)

Supplementary File S9. Co-located QTLs across multiple interval mapping for individual (T1, T2, T3) and multiple trials (MT) for Brandes × Wray sweet sorghum recombinant inbred lines based on physical and genetic maps. (XLSX)

Supplementary File S10. List of putative genes within a 10 kbp-window on each side of QTLs detected for Brandes × Wray sweet sorghum recombinant inbred lines. Coordinates were converted to match Sorghum bicolor genome v3.1.1. (XLSX)

Supplementary File S11. List of 150 differentially expressed genes from sweet sorghum associated with QTLs detected for Brandes × Wray sweet sorghum recombinant inbred lines. Coordinates were converted to match Sorghum bicolor genome v3.1.1. (XLSX)

Supplementary File S12. List of 50 known sucrose-related associated with QTLs detected for Brandes × Wray sweet sorghum recombinant inbred lines. Coordinates were converted to match Sorghum bicolor genome v3.1.1. (XLSX)

Supplementary File S13. List of previously reported QTLs according to Sorghum QTL Atlas (https://aussorgm.org.au/sorghum-qtl-atlas/). (XLSX)