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Supplemental Material for Wybouw et al., 2019

dataset
posted on 11.02.2019 by Nicky Wybouw, Olivia Kosterlitz, Andre H. Kurlovs, Sabina Bajda, Robert Greenhalgh, Simon Snoeck, Huyen Bui, Astrid Bryon, Wannes Dermauw, Thomas Van Leeuwen, Richard M. Clark
Figures_S1-S9. Supplemental figures.

Tables_S1-S11. Supplemental tables.

File_S1.vcf.gz. A VCF file with genetic data for T. urticae strains SR-VP, Lon-Inb and segregating populations.

File_S2_Heber.fasta.gz. A FASTA file with the genomic sequence of strain Heber.

File_S3_Lon-Inb.fasta.gz. A FASTA file with the genomic sequence of strain Lon-Inb.

File_S4_Parrott.fasta.gz. A FASTA file with the genomic sequence of strain Parrott.

File_S5_RS.fasta.gz. A FASTA file with the genomic sequence of strain RS.

File_S6_ShCo.fasta.gz. A FASTA file with the genomic sequence of strain ShCo.

File_S7_SR-VP.fasta.gz. A FASTA file with the genomic sequence of strain SR-VP.

File_S8_WG-Del.fasta.gz. A FASTA file with the genomic sequence of strain WG-Del.

File_S9_Heber.bam. An alignment file (.bam format) of strain Heber sequences to the T. urticae Sanger assembly.

File_S10_Lon-Inb.bam. An alignment file (.bam format) of strain Lon-Inb sequences to the T. urticae Sanger assembly.

File_S11_Parrott.bam. An alignment file (.bam format) of strain Parrott sequences to the T. urticae Sanger assembly.

File_S12_RS.bam. An alignment file (.bam format) of strain RS sequences to the T. urticae Sanger assembly.

File_S13_ShCo.bam. An alignment file (.bam format) of strain ShCo sequences to the T. urticae Sanger assembly.

File_S14_SR-VP.bam. An alignment file (.bam format) of strain SR-VP sequences to the T. urticae Sanger assembly.

File_S15_WG-Del.bam. An alignment file (.bam format) of strain WG-Del sequences to the T. urticae Sanger assembly.

File_S16_Tetranychus_urticae_3_Pseudochromosomes.fasta.gz. pChr1-3 sequences (plus smaller scaffolds) for the consolidated T. urticae assembly in FASTA format.

File_S17_Tetranychus_urticae_3_pseudochromosome.06.23.2016.gff3.
Gene models on the pChr1-3 T. urticae assembly in GFF3 format.

File_S18_Tetranychus_urticae_Gene_Annotations.txt. Functional description of T. urticae genes with coordinate information on the pChr1-3 assembly.


History

Article title

Long-Term Population Studies Uncover the Genome Structure and Genetic Basis of Xenobiotic and Host Plant Adaptation in the Herbivore Tetranychus urticae

Manuscript #

GENETICS/2018/301803

Article DOI

10.1534/genetics.118.301803

Licence

Exports