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Supplemental Material for Wybouw et al., 2019

dataset
posted on 11.02.2019, 17:04 by Nicky Wybouw, Olivia Kosterlitz, Andre H. Kurlovs, Sabina Bajda, Robert Greenhalgh, Simon Snoeck, Huyen Bui, Astrid Bryon, Wannes DermauwWannes Dermauw, Thomas Van Leeuwen, Richard M. Clark
Figures_S1-S9. Supplemental figures.

Tables_S1-S11. Supplemental tables.

File_S1.vcf.gz. A VCF file with genetic data for T. urticae strains SR-VP, Lon-Inb and segregating populations.

File_S2_Heber.fasta.gz. A FASTA file with the genomic sequence of strain Heber.

File_S3_Lon-Inb.fasta.gz. A FASTA file with the genomic sequence of strain Lon-Inb.

File_S4_Parrott.fasta.gz. A FASTA file with the genomic sequence of strain Parrott.

File_S5_RS.fasta.gz. A FASTA file with the genomic sequence of strain RS.

File_S6_ShCo.fasta.gz. A FASTA file with the genomic sequence of strain ShCo.

File_S7_SR-VP.fasta.gz. A FASTA file with the genomic sequence of strain SR-VP.

File_S8_WG-Del.fasta.gz. A FASTA file with the genomic sequence of strain WG-Del.

File_S9_Heber.bam. An alignment file (.bam format) of strain Heber sequences to the T. urticae Sanger assembly.

File_S10_Lon-Inb.bam. An alignment file (.bam format) of strain Lon-Inb sequences to the T. urticae Sanger assembly.

File_S11_Parrott.bam. An alignment file (.bam format) of strain Parrott sequences to the T. urticae Sanger assembly.

File_S12_RS.bam. An alignment file (.bam format) of strain RS sequences to the T. urticae Sanger assembly.

File_S13_ShCo.bam. An alignment file (.bam format) of strain ShCo sequences to the T. urticae Sanger assembly.

File_S14_SR-VP.bam. An alignment file (.bam format) of strain SR-VP sequences to the T. urticae Sanger assembly.

File_S15_WG-Del.bam. An alignment file (.bam format) of strain WG-Del sequences to the T. urticae Sanger assembly.

File_S16_Tetranychus_urticae_3_Pseudochromosomes.fasta.gz. pChr1-3 sequences (plus smaller scaffolds) for the consolidated T. urticae assembly in FASTA format.

File_S17_Tetranychus_urticae_3_pseudochromosome.06.23.2016.gff3.
Gene models on the pChr1-3 T. urticae assembly in GFF3 format.

File_S18_Tetranychus_urticae_Gene_Annotations.txt. Functional description of T. urticae genes with coordinate information on the pChr1-3 assembly.


History

Article title

Long-Term Population Studies Uncover the Genome Structure and Genetic Basis of Xenobiotic and Host Plant Adaptation in the Herbivore Tetranychus urticae

Manuscript #

GENETICS/2018/301803

Article DOI

10.1534/genetics.118.301803