Supplemental Material for Vendramin et al., 2020
Figure S1: Rab17 RT-qPCR
Figure S2: MDS clustering
Figure S3: DNG RT-qPCR
Figure S4: Promoter methylation in Mop1 WT and mop1-1 mutant for DEGs and non-DEGs
Figure S5: Heatmap (Log2 FC) of TF Network DEGs
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.5px Helvetica; color: #141414} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} span.s1 {font: 12.0px Helvetica; color: #000000} span.s2 {color: #000000}
Table S1: DEGs no. for DE analysis using different biological replicates no.
Table S2: Maize protein phosphatases class A (PP2C-A)
Table S3: Genes differentially expressed in mop1-1 mutant seedling & SAM
Table S4: Number of GO terms found for DEGs in four groups
Table S5: Number of genes found in each model group and subgroup
Table S6: High-confidence miRNAs
File S1: Groups I-VII log2FC
File S2: GO term enrichment per DEG group
File S3: Homologous TFs
File S4: Tiers and Downstream genes
File S5: Group model parameters per gene
File S6: Genome-wide siRNA changes in mop1-1 mutant
File S7: TGS2 target genes
File S8: SeqCap DNA methylation ratios in all sequence contexts
File S9: Promoter DNA methylation for Mop1 wildtype ABA-responsive DEGs
File S10: MOP1-ABA targets with a loss of siRNA and DNA methylation at ABRE sites
History
Article title
Epigenetic Regulation of ABA-Induced Transcriptional Responses in MaizeManuscript #
G3/2019/400993Article DOI
10.1534/g3.119.400993Usage metrics
Categories
- Plant physiology
- Plant biology not elsewhere classified
- Plant cell and molecular biology
- Epigenetics (incl. genome methylation and epigenomics)
- Bioinformatics and computational biology not elsewhere classified
- Medical biotechnology not elsewhere classified
- Gene expression (incl. microarray and other genome-wide approaches)
- Genetics not elsewhere classified
- Genome structure and regulation
- Genomics