Supplemental Material for Tyrmi et al., 2020

Figure S1 contains p-value distributions for linear regression analysis. Figure S2 contains cross-validation results for conStruct analysis. Figure S3 contains scree plot for pcadapt analysis. Figure S4 contains p-value distribution for pcadapt analysis. Figure S5 contains between-population covariance visualizations for conStruct analysis. Figure S6, S7 and S8 contain boxplot representation for between population FST, dXY and pairwise within population p for the peculiar haplotype pattern region and for permuted datasets. Table S1 lists interesting outliers for linear regression analysis. Table S2 shows pairwise FST-values for all population pairs with the putative inversion removed. File S1 contains the final 60,000 bait set sequences in fasta format. File S2 contains additional method description for filtering paralogous variants. File S3 contains SNP-data in vcf-format used in the analysis of this publication. Custom script used in calculating p is provided in File S4.