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Supplemental Material for Sonnenberg and Haugen, 2021

posted on 2021-07-16, 19:03 authored by Cecilie Bækkedal Sonnenberg, Peik Haugen

Supplemental data are available in Figure S1 and Files S1-6. Figure S1 shows phylogenetic relationships between Alteromonadales families. A list of all 25 Pseudoalteromonas genomes used in this study are available in File S1. File S2 contains distribution data of core, softcore, shell and cloud on Pseudoalteromonas chromosome and chromid divided into 4, 6, 8, 10 and 12 sectors. File S3 contains statistical analysis of pairwise comparisons of number of genes between sectors (Kruskal-Wallis and Dunn´s test). Statistical analysis of gene expression of P. fuliginea BSW20306 chromosome and chromid using Wilcoxon signed-rank test is available in File S4. File S5 contains BLASTp results with chromid ParA, ParB and RepA as queries. A list of chromid hallmark genes and BLASTp results is available in File S6. Supplemental material is available at figshare.


Article title

The Pseudoalteromonas multipartite genome: Distribution and expression of pangene categories, and a hypothesis for the origin and evolution of the chromid