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Supplemental Material for Snoeck et al., 2018
dataset
posted on 2018-10-17, 14:51 authored by Simon Snoeck, Nicky Wybouw, Thomas Van Leeuwen, Wannes DermauwWannes DermauwFile S1 contains the CDS sequences of the T. urticae genome annotation of August
11, 2016. File S2 contains the protein sequences of the short-chain
dehydrogenases of T. urticae, M. occidentalis, D. melanogaster and H. sapiens
that were included in the phylogenetic analysis. File S3 contains the sequences
of the full-length single PLAT domain proteins of T. urticae, T. evansi, P. ulmi and P. citri that were included in the phylogenetic analysis. Figure S1
shows the expression heatmaps of genes coding for group I and II SDRs and of group
I and II single PLAT domain protein genes across the replicated T. urticae host plant populations (lima
bean, soybean, cotton, tomato and maize). Table S1 contains the differential
gene expression results of the T. urticae
host plant populations. Table S2 shows the overlap between DEGs of the
different T. urticae host plant populations.
Table S3 shows the k-means clustering
of the DEGs identified in the different host plant populations of T. urticae. Table S4 shows the OrthoMCL grouping
of the T. urticae proteome. Table S5
contains the OrthoMCL enrichment results of the DEG sets of each T. urticae host plant population. Table
S6 contains the significantly enriched GO terms in the DEG sets of the
different host plant populations of T.
urticae. Table S7 contains the short-chain dehydrogenase genes annotated in
the T. urticae genome. Table S8
contains the single PLAT domain protein genes annotated in the T. urticae genome. T. urticae gene expression data
are available at the Gene Expression
Omnibus with accession numbers GSE50162, GSE80337 and
GSE68708.
History
Article title
Transcriptomic Plasticity in the Arthropod Generalist Tetranychus urticae Upon Long-Term Acclimation to Different Host PlantsManuscript #
G3/2018/200585R1Article DOI
10.1534/g3.118.200585Usage metrics
Categories
Keywords
plant defensehost plant usexenobiotic metabolismsingle PLAT domain proteinshort-chain dehydrogenasespolyphagyTetranychus urticaespider miteherbivoretranscriptomic plasticityAnimal Physiological EcologyBiological AdaptationEvolutionary BiologyGene Expression (incl. Microarray and other genome-wide approaches)