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Supplemental Material for Smith et al., 2020

dataset
posted on 13.04.2020, 17:02 by Seth Smith, Stephen J. Amish, Louis Bernatchez, Jérémy Le Luyer, Chris Wilson, Olivia Boeberitz, Gordon Luikart, Kim T. Scribner

Document S1: Detailed description of library preparation, RNA bait design, and targeted sequence capture methods.

Document S2: Map information, phenotypes, and genotypes used for QTL and sex locus mapping.

Table S1: The lake trout linkage map and sequences of mapped RAD loci.

Table S2: Centromere mapping intervals for each linkage group

Table S3: Candidate genes identified for significant QTL peaks.

Table S4: Estimated recombination rates for each linkage group

Figure S1: Alignments of lake trout linkage groups with Arctic char chromosomes.

Figure S2: Alignments of lake trout linkage groups with rainbow trout chromosomes.

Figure S3: Alignments of lake trout linkage groups with Atlantic salmon chromosomes.

Figure S4: Dot plot grid comparing the lake trout linkage map with the Arctic char genome assembly.

Figure S5: Dot plot grid comparing the lake trout linkage map with the rainbow trout genome assembly.

Figure S6: Dot plot grid comparing the lake trout linkage map with the Atlantic salmon genome assembly.

Figure S7: MapComp dot plot grid comparing the lake trout linkage map with the brook trout linkage map from Sutherland et al. (2016).

Figure S8: Centromere mapping using half tetrad analysis.

Figure S9: Boxplots of recombination rate estimated for each linkage group for males and females.


History

Article title

Mapping of Adaptive Traits Enabled by a High-Density Linkage Map for Lake Trout

Manuscript #

G3/2020/401184

Article DOI

10.1534/g3.120.401184

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