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Supplemental Material for Schoonmaker et al., 2019

dataset
posted on 06.11.2019 by Ashley Schoonmaker, Yue Hao, David McK. Bird, Gavin Conant
Figure S1 gives the distribution of Ka values for the three MIG genomes
Ten core data files are broken down as:
1-3: Gene order files:
· Meloidogyne_arenaria_POInT_geneorders.txt
· Meloidogyne_incognita_POInT_geneorders.txt
· Meloidogyne_javanica_POInT_geneorders.txt
4: The inferred ancestral gene order: Nematode_WGT_OptOrder.txt
5-8: 4 models of gene loss after triplication:
· WGT_Null_model.txt
· WGT_1Frac_model.txt
· WGT_1FracS_model.txt
· WGT_1FracS2_model.txt
9: The optimized phylogenetic topology, Nematode_WGT_OptTopo.tre
and
10: The set of orthology predictions from POInT:
ThreeSpp_WGT_1Frac_SingF_DSep_Top2_m2Opt2_postprobs.txt.

History

Article title

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

Manuscript #

G3/2019/400650R1

Article DOI

10.1534/g3.119.400650

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