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Supplemental Material for Pook et al., 2021

dataset
posted on 14.01.2021, 18:34 by Torsten Pook, Lisa Büttgen, Amudha Ganesan, Ngoc-thuy Ha, Henner Simianer
Figure S1: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZE (type). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).

Figure S2: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZR (fertility). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).

Figure S3: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZS (somatic cell score). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).

Figure S4: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZKm (calving traits). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).

Figure S5: Prediction accuracy of the breeding value estimation for the different scenarios. Prediction accuracy is defined here, as the correlation between the estimated breeding value (ssBLUP_BVE, pedigree_BVE) / phenotypes (Baseline, Low_SelectionIntensity, Change_IndexWeights) and the underlying true genomic values.

File S1: JSON-files generated in MoBPSweb for the scenarios compared ("Baseline", "pedigree_BVE", "ssBLUP_BVE", "Low_SelectionIntensity", "Change_IndexWeights")

File S2: JSON-files generated in MoBPSweb for an exemplary commercial layer breeding program.

File S3: JSON-files generated in MoBPSweb for a horse breeding program.

File S4: JSON-files generated in MoBPSweb for the cock rotation breeding program.

File S5: JSON-files generated in MoBPSweb for the generation of a MAGIC population in maize.

File S6: Exemplary R-script to simulate the reference dairy cattle breeding scheme (Figure 2).

History

Article title

MoBPSweb: A web-based framework to simulate and compare breeding programs

Manuscript #

G3-2021-402093

Licence

Exports

G3: Genes|Genomes|Genetics

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Exports