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Supplemental Material for Picq et al., 2018
dataset
posted on 2018-06-27, 15:07 authored by Sandrine Picq, Lisa Lumley, Jindra Šíchová, Jérôme Laroche, Esther Pouliot, Bryan Brunet, Roger C. Levesque, Felix A. H. Sperling, František Marec, Michel CussonFile S1 details the
experimental design used to generate spruce budworm families for the linkage
map. File S2 summarizes linkage map information i.e. number of marker
and size in cM, for each linkage group. File S2 also provides details on
position, errors and sequence for each marker included in the linkage map, and the
significant hits in tblastx searches against the Bombyx mori and the Melitaea
cinxia genomes. File S3 details assignment of the Choristoneura fumiferana linkage groups to B. mori and the M.a cinxia
chromosomes. The file named Picq_et_al_SBW_linkage_map_filtered_SNP_20180403.txt contains genotypes of the 4
families used to generate the linkage map (8 parents and 109 descendants) for
the 13,900 filtered SNPs (see main manuscript for details). The SNP data
for individuals are in columns and loci are in rows; the first column provides
loci name. The individuals names contains the following informations: family
number, individual number and sex (Female or Male). For
example, the individual Fm10I01F is the descendant number 1 of the family 10
and this is a female. The individuals which names begins with P are parents.
For example PFm10 means parents of the family 10. The file named Picq_et_al_SBW_linkage_map_filtered_SNP_20180403.linkage presents
the same data as the file above but in format ready-to-use in Lep-MAP
(pre-makeped linkage format).