Supplemental Material for Pers and Hansen, 2021

Supplemental Material:

Supplemental Materials and Methods

Supplemental Figures S1 to S8

Supplemental Tables S1 to S8

Legends for Supplemental Datasets S1 to S10

Supplemental References

Dataset S1: Raw and Normalized Read Counts

Dataset S2: Differentially Expressed Genes

Dataset S3: Differentially Expressed Isoforms

Dataset S4: GSEA Enriched KEGG Pathways

Dataset S5: Enzymes from GSEA Enriched

KEGG Pathways

Dataset S6: Expression and Methylation

Profiles of Symbiotic and

Developmental Genes of Interest

Dataset S7: Differentially Methylated Sites

Dataset S8: Differentially Methylated and

Differentially Expressed Genes and

Isoforms

Dataset S9: RNAseq Code

Dataset S10: WGBSseq Code