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Supplemental Material for Osorio-Guarín, Berdugo-Cely et al., 2020

dataset
posted on 11.03.2020 by Jaime A. Osorio-Guarín, Jhon A. Berdugo-Cely, Roberto A. Coronado-Silva, Eliana Baez, Yeirme Jaimes, Roxana Yockteng
Table S1 contains the list of the accessions used. The phenotypic data is provided in Table S2. Table S3 contains a summary of the statistics for the sequenced data per individual. The candidate genes under positive selection per chromosome are provided in Table S4. Files S5 and S6 include the vcf files of the SNPs discovered for Criollo and Matina, respectively. Figure S1 exhibits an in silico analysis of the restriction enzymes. Figure S2 presents the number of sequenced reads of each accession. Figure S3 shows the correlation among traits of the entire population. Figure S4 contains the QQ-plots for each evaluated trait. The R script for the detection of common outliers in selective sweeps is available at http://pop-gen.eu/wordpress/wp-content/uploads/2013/12/combined_analysis.zip. The raw sequencing data of the reference samples were downloaded from the BioProject PRJNA486011 (Cornejo et al. 2018), via NCBI. Supplemental material is available at Figshare: https://gsajournals.figshare.com/s/165b88f523482900eb79.

History

Article title

Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to Moniliophthora spp. in Cacao (Theobroma cacao L.)

Manuscript #

G3/2020/401153

Article DOI

10.1534/g3.120.401153

Licence

Exports