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Supplemental Material for Nürnberger et al., 2021

dataset
posted on 22.09.2021, 16:50 by Beate Nürnberger, Stuart J.E. Baird, Dagmar Čížková, Anna Bryjová, Austin B. Mudd, Mark L. Blaxter, Jacek M. Szymura

This archive contains supplementary material for a dense Bombina linkage map (https://doi.org/10.1093/g3journal/jkab286). File S2 contains the Mathematica script used for diplotyping. File S3 is the Lep-MAP3 input file. File S4 contains the bait sequences (fasta format). File S5 is the diplotype matrix (output from the Mathematica script). File S6 is the linkage map file. File S7 lists NCBI annotations of mapped loci. File S8 lists InterProScan annotations of mapped loci. File S9 explains the contents of the repository and how information can be linked across individual files. File S10 contains the assembly of B. variegata genomic repeats. File S11 is the B. variegata mapping reference for 5000 enrichment targets. Figure S1 illustrates male and female gonad morphology in late stage tadpoles. Figure S9 displays pairwise recombination fractions and LOD scores for each linkage group.

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History

Article title

A dense linkage map for a large repetitive genome: discovery of the sex-determining region in hybridising fire-bellied toads (Bombina bombina and B. variegata)

Article DOI

https://doi.org/10.1093/g3journal/jkab286