Supplemental Material for Mundodi et al., 2020
datasetposted on 2020-12-11, 19:14 authored by Vasanthakrishna Mundodi, Saket ChoudharySaket Choudhary, Andrew D. Smith, David Kadosh
Supplemental Material file contains a listing of all supplemental materials as well as Table S1, listing of biotinylated subtraction oligonucleotides used for C. albicans ribosome profiling experiments, Table S2, number of genes showing significantly altered translational efficiency (TE) and RNA differential expression during the C. albicans yeast-filament transition, Figure S1, scatter plots showing consistency among Ribo-seq and RNA-seq biological replicates, Figure S2, gene ontology (GO) and network analysis of genes showing differential expression at the transcript level and Figure S3, volcano plot of genes showing differential expression at the transcript level during the C. albicans morphological transition. Dataset S1 contains TE and RNA DE data for annotated genes as well as potential novel genes and uORFs in C. albicans cells undergoing the yeast-filament transition. Dataset S2 contains GO data for genes showing alterations in TE and RNA DE during the C. albicans morphological transition as well as C. albicans genes possessing potential uORFs and ribosome pausing sites. Dataset S3 is a re-annotated C. albicans GTF file. Dataset S4 is a GTF file for potential novel C. albicans ORFs only. Dataset S5 provides a listing of C. albicans potential uORFs identified in this study (please note that potential uORFs identified for both alleles are shown). Dataset S6 contains a listing of potential novel C. albicans ORFs identified in this study. Dataset S7 contains a listing of C. albicans ribosome pausing sites identified in this study.