1/1
12 files

Supplemental Material for Kawato et al., 2021

dataset
posted on 27.07.2021, 17:56 by Satoshi KawatoSatoshi Kawato, Koki Nishitsuji, Asuka Arimoto, Kanako Hisata, Mayumi Kawamitsu, Reiko Nozaki, Hidehiro Kondo, Chuya Shinzato, Tsuyoshi Ohira, Noriyuki Satoh, Eiichi Shoguchi, Ikuo Hirono
Supplementary_Figures.pdf: Supplementary Figures S1-S3
Supplementary_Tables.xlsx: Supplementary Tables S1-S8
Mj_TUMSAT_v1.0.html and Mj_TUMSAT_v1.0.md: custom scripts used in this study
Mj_TUMSAT_v1.0.gff3: GFF3-formated annotation file containing protein-coding and non-coding RNA gene models predicted on the Mj_TUMSAT_v1.0 assembly
Mj_TUMSAT_v1.0.transcripts.fna: predicted transcript sequences of protein-coding gene models in Mj_TUMSAT_v1.0.gff3
Mj_TUMSAT_v1.0.cds.fna: nucleotide sequences of predicted CDS in Mj_TUMSAT_v1.0.transcripts.fna
Mj_TUMSAT_v1.0.prot.faa: protein sequences translated from Mj_TUMSAT_v1.0.cds.fna
Mj_TUMSAT_v1.0.annotation.tsv: summary table for the functional annotations assigned to the protein-coding genes in Mj_TUMSAT_v1.0.gff3
Mj_TUMSAT_v1.0.repeats.fna: M. japonicus-specific repeat library
IsoSeq_sqanti_report.pdf: SQANTI3 report for the Iso-Seq cDNA sequences
IsoSeq.aligned.nr.corrected.fna: genome-corrected, non-redundant Iso-Seq cDNA sequences

History

Article title

Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus