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Supplemental Material for Iversen et al., 2020

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posted on 04.03.2021, 17:44 by Marianne Iversen, Teshome Mulugeta, Alexander West, Even H. Jørgensen, Samuel A. M. Martin, Simen Rød Sandve, David Hazlerigg

S1 Differentially expressed genes between FW and SW at times T4, T5 and T6, for the different treatments (LL, SP, SPLL). Data filtered for logFC>|1| and FDR<0.01.

S2 Box plots showing the expression of genes KCNJ1, KCNJ4, and JCAD (raw counts).

S3 Additional GO plots showing GO-terms analysis of SW-sensitive genes expression at T4, T5 and T6 for the different photoperiod treatments. Data are shown as Bubble-plots of GO-terms and the number of genes linked to each term. Terms enriched across groups are indicated by colour. Strongly represented GO-terms are labelled. For T4 and T5 terms connected to biological processes, cellular components and molecular function are shown, for T6 only cellular comonnent and molecular function are shown as biological process can be viewed in figure 2.

S4 Set of tables (sheet 1,2,3) showing the enriched GO-terms at T4, for the three photoperiod treatments, adjusted p-value>0.05. Data has also been filtered for number of connected genes. Also included is an overview of the data behind T4 GO plots in S3, listing all GO terms, number of genes in each term, and overlap between photoperiod treatments.

S5 Set of tables (sheet 1,2,3) showing the enriched GO-terms at T5, for the three photoperiod treatments, adjusted p-value>0.05. Data has also been filtered for number of connected genes. Also included is an overview of the data behind T5 GO plots in S3, listing all GO terms, number of genes in each term, and overlap between photoperiod treatments.

S6 Set of tables (sheet 1,2,3) showing the enriched GO-terms at T6, for the three photoperiod treatments, adjusted p-value>0.05. Data has also been filtered for number of connected genes. Also included is an overview of the data behind T6 GO plots in S3, listing all GO terms, number of genes in each term, and overlap between photoperiod treatments.

S7 Overview of NFAT-genes, including raw count data. Genes are ordered as in the heatmap.

S8 Boxplots showing the expression of the NFAT genes (raw counts).

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Article title

Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar)

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G3: Genes|Genomes|Genetics

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