Supplemental Material for Hoffberg et al., 2018
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
File S1: Submission script for MAKER.
File S2: MAKER executable file (maker_exe.ctl).
File S3: Specifications for downstream filtering of BLAST and Exonerate alignments (maker_bopts.ctl).
File S4: Primary configuration of MAKER specific options (maker_opts.ctl).
File S5: Commands for training SNAP.
File S6: Submission script for BLAST comparing Gambusia affinis with related fish.
File S7: Submission script for BUSCO.
File S8: Submission script for predicting ncRNAs.
File S9: Illumina reads mapped to the reference in BAM format.
File S10: Sequence of tRNAs.
File S11: Structure of tRNAs.