Supplemental Material for Hoffberg et al., 2018
File S1: Submission script for MAKER.
File S2: MAKER executable file (maker_exe.ctl).
File S3: Specifications for downstream filtering of BLAST and Exonerate alignments (maker_bopts.ctl).
File S4: Primary configuration of MAKER specific options (maker_opts.ctl).
File S5: Commands for training SNAP.
File S6: Submission script for BLAST comparing Gambusia affinis with related fish.
File S7: Submission script for BUSCO.
File S8: Submission script for predicting ncRNAs.
File S9: Illumina reads mapped to the reference in BAM format.
File S10: Sequence of tRNAs.
File S11: Structure of tRNAs.