Supplemental Material for Higgins et al., 2018

Supplementary Information for Higgins et al: Table S1-10:

SNP marker data for all testcross populations; Table S11:

List of all HeR, duplication and deletion events in test

cross populations; Table S12: SNP markers used for

homoeologous alignment of A and C genomes: Table S13:

Compressed SNP data showing summary of de novo chromosome

gain and loss in each testcross individual; Table S14:

Homoeologous recombination events in Zhongyou821 identified

through whole genome sequencing.