Supplemental Material for Henson et al., 2025
dataset
posted on 2025-10-01, 14:47 authored by Lauren H. Henson, Kris A. Christensen, Ben J. G. Sutherland, Hollie A. Johnson, Bridgett vonHoldt, Astrid Vik Stronen, Paul Paquet, Jason Moody, Ben F. Koop, Chris T. Darimont<p>VCF/BCF files associated with the article "<em>Grizzly bear population genomics across a coastal-interior ecotone in British Columbia, Canada</em>", including: </p>
<p>- <em>variants.GATK.iteration.1.Full.sorted.variantRecalibrated.BiSNP.Mis09.recode.vcf.gz </em>= all called variants by GATK</p>
<p>- <em>variants.GATK.iteration.1.Full.sorted.variantRecalibrated.BiSNP.Mis09.MAF05.recode.vcf.gz </em>= all called variants by GATK with MAF > 0.05</p>
<p>- <em>variants.GATK.iteration.1.Full.sorted.variantRecalibrated.BiSNP.Mis09.MAF05.recode_annot_snplift.UrsArc2.0_rehead_noindel5_miss0.15_SNP_q20_avgDP7_biallele_minDP5_maxDP1000_minGQ20_miss0.15_w_tags_MAF0.05.bcf </em>= SNPlift conducted to move to UrsArc2.0 then additional filters applied, including MAF filter. </p>
