Supplemental Material for Han et al., 2021

File S1 contains nonredundant bed files from McClintock runs using TEMP module on the expanded dataset including 34 Drosophila cell line samples. File S2 contains clustered TE profiles in the format of binary presence/absence data matrix including 34 Drosophila cell line samples. File S3 includes data matrix of the number of non-reference TE insertion gain events per family on each branch of the most parsimonious tree used for the heatmap in Fig. 3B. File S4 includes nonredundant bed files from McClintock runs using ngs_te_mapper2 module on the normalized OSS and OSC dataset. File S5 includes clustered TE profiles in the format of binary presence/absence data matrix including 6 OSS and OSC cell line samples. File S6 includes data matrix of the number of non-reference TE insertion gain events per family on each branch of the most parsimonious tree used for the heatmap in Fig. 4C.