Supplemental Material for Grabowski et al., 2024
dataset
posted on 2024-08-28, 14:37 authored by Paul P. Grabowski, Phat Dang, Jerry J. Jenkins, Avinash SreedasyamAvinash Sreedasyam, Jenell Webber, Marshall Lamb, Qiong Zhang, Alvaro Sanz-Saez, Yucheng Feng, Victoria Bunting, Jayson Talag, Josh Clevenger, Peggy Ozias-Akins, C. Corley Holbrook, Ye Chu, Jane Grimwood, Jeremy Schmutz, Charles Chen, John T. LovellFiles to accompany the analysis of the Arachis hypogaea Line8 v1 genome assembly.
File S1.txt: The percentages of sequence for each annotation within 5Mb windows across the Line8 genome assembly.
File S2.txt: Positions of syntentic regions and and inversions between Line8 homeologs.
File S3.txt: Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to the full Line8 assembly without Arahy.09_alt.
File S4.txt: Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to Line8 subgenomes A and B separately.
File S5.vcf.gz: VCF containing the SNPs for Line8 when mapped to the Tifrunner assembly, including predicted effects of SNPs
