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File S1.txt (1.31 MB)
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File S2.txt (57.49 kB)
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File S3.txt (2.81 MB)
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File S4.txt (2.82 MB)
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File S5.vcf.gz (13.9 MB)
DOCUMENT
Figure S1.pdf (127.96 kB)
DOCUMENT
Figure S2.pdf (1.46 MB)
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Table S1.txt (273.62 kB)
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Table S2.txt (6.51 kB)
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Table S3.txt (0.37 kB)
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Table S4.txt (211.36 kB)
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Table S5.txt (0.63 kB)
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Table S6.txt (0.48 kB)
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Table S7.txt (0.29 kB)
DOCUMENT
Supplemental Material Legends.docx (14.86 kB)
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Supplemental Material for Grabowski et al., 2024
dataset
posted on 2024-08-28, 14:37 authored by Paul P. Grabowski, Phat Dang, Jerry J. Jenkins, Avinash SreedasyamAvinash Sreedasyam, Jenell Webber, Marshall Lamb, Qiong Zhang, Alvaro Sanz-Saez, Yucheng Feng, Victoria Bunting, Jayson Talag, Josh Clevenger, Peggy Ozias-Akins, C. Corley Holbrook, Ye Chu, Jane Grimwood, Jeremy Schmutz, Charles Chen, John T. LovellFiles to accompany the analysis of the Arachis hypogaea Line8 v1 genome assembly.
File S1.txt: The percentages of sequence for each annotation within 5Mb windows across the Line8 genome assembly.
File S2.txt: Positions of syntentic regions and and inversions between Line8 homeologs.
File S3.txt: Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to the full Line8 assembly without Arahy.09_alt.
File S4.txt: Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to Line8 subgenomes A and B separately.
File S5.vcf.gz: VCF containing the SNPs for Line8 when mapped to the Tifrunner assembly, including predicted effects of SNPs
