posted on 2021-11-04, 13:46authored byCamilla Borges Gazolla, Adriana Ludwig, Joana de Moura Gama, Daniel Pacheco Bruschi
Summary of analyzes of
the copies retrieved of the Xenopus tropicalis and X. laevis
genomes for DIRS-like and Ngaro-like elements. Lines 3-97 represent Repbase
copies while lines 98-157 represent the analyses of the 10 most conserved
copies retrieved from each species. Genome locations (chromosome/scaffolds)of
each copy, nucleotide sequence size (in base pair) and superfamily assigned are
indicated. Size of each predicted ORF and their predictive conserved domain are
indicated by the initial and final position in the copy isolate (position in
bp). Copies with conserved structure of the ORFs and the complete domains are
highlights in green shade, copies that exhibits conserved structureof the ORFs
but with premature interruptions in the domains are highlights in yellow shade
while copies with high-level of degeneration (in the ORFs or domains) remained
without shading.
History
Article title
Evolutionary dynamics of DIRS-like and Ngaro-like retrotransposons in Xenopus laevis and Xenopus tropicalis genomes