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Supplemental Material for Couger, Arévalo, and Campbell, 2018

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posted on 2018-06-21, 18:00 authored by Matthew Couger, Lena Arevalo, Polly Campbell
The Fileset comprises two unrooted cladograms for vomeronasal receptor families 1 and 2 in three mouse (Mus) species, and the sequences used to generate these trees.

MusspicilegusOrginalHeaders.fa (Orignal Assembly with orginal headers produced by 10x Supernova 1.15)
MusspicilegusRenamedScaffolds.fa (Same assembly renamed for gene calling and anylsis)
MusspicilegusTranscriptomeAssembly.fasta (Orginal De Novo Transcriptome Assembly)
MusspicilegusTranscriptomePeptides.fa (Transdecoder Peptides from De Novo Assembly)
MusspicilegusFinalProteinModels.fasta = Final EVM PASA2 Improved Integrated Peptide Gene Models (PASA2+Abinitio+ ProteintoGenome Alingemts)
MuspFinalGeneModels.gff3 = Final EVM PASA2 improved Intgerated models gff ((PASA2+Abinitio+ ProteintoGenome Alingemts))


Article title

A High Quality Genome for Mus spicilegus, a Close Relative of House Mice with Unique Social and Ecological Adaptations

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