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DataS1.kgwasflow_G3_supp_tables.xlsx (9.88 MB)
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DataS2.kGWASflow_G3_supp_figures.docx (4.1 MB)
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DataS3.config.yaml (12.47 kB)
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DataS4.phenos.tsv (0.02 kB)
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DataS5.samples.tsv (0.04 kB)
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DataS6.config_ecoli.yaml (11.36 kB)
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DataS7.phenos_ecoli.tsv (0.07 kB)
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DataS8.samples_ecoli.tsv (8.04 kB)
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DataS9.ecoli_resistence_phenotype.pheno.xlsx (13.42 kB)
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DataS10.kGWASflow_summary_report-ecoli.html (8.88 MB)
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DataS11.config_maize.yaml (11.54 kB)
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DataS12.phenos_maize.tsv (0.29 kB)
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DataS13.samples_maize.tsv (160.72 kB)
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DataS14.maize_phenotypes.xlsx (21.75 kB)
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DataS15.kGWASflow_summary_report-maize.html (28.66 MB)
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Supplemental Material Legends.docx (12.38 kB)
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16 files

Supplemental Material for Corut and Wallace, 2023

dataset
posted on 2023-10-19, 15:07 authored by Adnan Kivanc Corut, Jason G. Wallace

Supplementary Data S1: Supplemental information contains Tables S1-S8.

Supplementary Data S2: Supplemental information contains Figures S1-S5.

Supplementary Data S3-5: Example default configuration files of kGWASflow.

Supplementary Data S6-10: The configuration files, phenotype information and HTML summary report of kGWASflow run with the E.coli dataset.

Supplementary Data S11-15: The configuration files, phenotype information and HTML summary report of kGWASflow run with the maize dataset.

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Article title

kGWASflow: a modular, flexible, and reproducible Snakemake workflow for k-mers-based GWAS

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    G3: Genes|Genomes|Genetics

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