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Supplemental Material for Busche et al., 2019

dataset
posted on 11.11.2019 by Mareike Busche, Boas Pucker, Prisca Viehöver, Bernd Weisshaar, Ralf Stracke

File S1. Per chromosome read coverage distribution of Dwarf Cavendish reads.

File S2. Comparison of SNVs in the duplicated segment on the long arm of chromosome 2 to all other SNVs in the genome. The higher read coverage at variants indicates a duplication of this region.

File S3. List of public genomic banana sequence read samples used for comparison against Dwarf Cavendish based on the DH Pahang reference.

File S4. Coverage plots of public genomic banana sequence read samples (File S1) for comparison against Dwarf Cavendish based on the DH Pahang reference. Samples are: Musa acuminata, Musa acuminata AYP_BOSN_r1, Musa acuminata ssp. banksii, Musa acuminata ssp. burmannica, Musa acuminata Cavendish BaXiJiao, Musa acuminata Gros Michel, Musa acuminata ssp. malaccensis, Musa acuminata Sucrier (Pisang Mas), Musa acuminata Sucrier (Pisang Mas 1998-2307), Musa acuminata ssp. zebrina (blood banana), Musa balbisiana Pisang Klutuk Wulung, Musa itinerans, Musa schizocarpa.

File S5. List of selected high impact variants between Dwarf Cavendish and DH Pahang with resulting effects predicted by SnpEff.


History

Article title

Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2

Manuscript #

G3/2019/400847

Article DOI

10.1534/g3.119.400847

Licence

Exports