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Supplemental Material for Bilton et al., 2018

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posted on 13.07.2018 by Timthy P. Bilton, John C. McEwan, Shannon M. Clarke, Rudiger Brauning, Tracey C. van Stijn, Suzanne J. Rowe, Ken G. Dodds
Scripts for generating the simulated sequencing data are provided in File S1. Figures S1 and S2 gives bias and standard errors of LD estimates for the second and third simulation scenarios. Figure~S3 gives the standard errors of the allele frequency estimates for all the simulations. Figures S4 and S5 gives the mean square errors of LD estimates for the second and third simulation scenarios. Figure S6 gives the mean read depth distribution for the SNPs used in the deer dataset and Figure S7 gives the distribution of the sequencing error estimates for the deer analysis.

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Article title

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data

Manuscript #

GENETICS/2018/300831

Article DOI

10.1534/genetics.118.300831

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