Supplemental Material for Baker et al., 2020
datasetposted on 04.06.2020 by Lauren A. Baker, Mehdi Momen, Kore Chan, Nathan Bollig, Fernando Brito Lopes, Guilherme J.M. Rosa, Rory J. Todhunter, Emily E. Binversie, Susannah J. Sample, Peter Muir
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
These files are the genotyping datasets that were used to perform the analyses in Baker et al. 2020. The filesets represent individuals that were recruited from University of Wisconsin-Madison and from Cornell University. Filesets that include 0.7 in the filename have been pruned for LD at r2 greater than or equal to 0.7. This file contains the code used for all genomic prediction analyses in R markdown .htm format.