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Supplemental Material for Serrano Negron, Hansen, and Harbison, 2018
dataset
posted on 2018-07-09, 16:41 authored by Yazmin L. Serrano Negron, Nancy F. Hansen, Susan T. HarbisonFigure
S1. Plot of sequence coverage in SIP lines. Figure S2. Plot of LoFreq score
distributions for known and novel variants. Figure S3. Day sleep in The Sleep
Inbred Panel. Figure S4. Comparison of SIP night sleep and 24-hour sleep with
the longest- and shortest-sleeping lines of the DGRP. Table S1. Analysis of
variance of sleep traits. Table S2. Comparison of variant calls between BWA and
novoalign alignments. Table S3. Mean sleep parameters for each line.Table S4. Comparison
of SIP line sleep phenotypes to progenitor populations by progenitor selection
scheme and replicate population. Table S5. Mean sleep CVE parameters
for each line. Table S6. ANOVA of sleep CVE traits by
progenitor selection scheme and replicate population. Table S7. Standard
deviation across days for each sleep parameter of each line. Table S8. ANOVA of
sleep σ traits by progenitor selection scheme and
replicate population. Table S9. Sequence variant categories. Table S10. Comparison
of actual versus predicted homozygosity on each chromosome arm of the SIP. File
S1. Plot of predicted DGRP founder haplotypes from Hidden Markov Model for
Chromosomes X, 2L, 3L, and 3R. File S2. Sleep Inbred Panel list of
variants and confidence intervals using BWA alignment. File S3. Sleep Inbred
Panel list of variants and confidence intervals using Novoalign alignment. File
S4. Sleep Inbred Panel annotated variant call file using BWA alignment. File
S5. Sleep Inbred Panel annotated variant call file using Novoalign alignment.
