Supplemental Material for Schoonmaker et al., 2019

Figure S1 gives the distribution of Ka values for the three MIG genomes

Ten core data files are broken down as:

1-3: Gene order files:

· Meloidogyne_arenaria_POInT_geneorders.txt

· Meloidogyne_incognita_POInT_geneorders.txt

· Meloidogyne_javanica_POInT_geneorders.txt

4: The inferred ancestral gene order: Nematode_WGT_OptOrder.txt

5-8: 4 models of gene loss after triplication:

· WGT_Null_model.txt

· WGT_1Frac_model.txt

· WGT_1FracS_model.txt

· WGT_1FracS2_model.txt

9: The optimized phylogenetic topology, Nematode_WGT_OptTopo.tre

and

10: The set of orthology predictions from POInT:

ThreeSpp_WGT_1Frac_SingF_DSep_Top2_m2Opt2_postprobs.txt.