Supplemental Material for Pook et al., 2019

<div>File S1: Additional method section on setting a target-coverage.</div><div><br></div><div>File S2: Additional method section on the graphical representation of haplotype blocks.<br></div><div><br></div><div>File S3: Additional method section - toy example for calculation of bEHH.</div><div><br></div><div>Table S1: Proportion of variance explained between the full SNP-dataset (X), a SNP-subset (X<sub>s</sub>) and the block dataset (Z). For comparability the number of parameters in X<sub>s</sub> and Z were chosen equally using traditionally heritability estimation as in de los Campos (2017).</div><div><br></div><div>Table S2: Influence of the window size on the haplotype library for chromosome 1 in the PE DH-lines.</div><div><br></div><div>Table S3: Influence of the weighting of block length (w<sub>l</sub>) and number of haplotypes (w<sub>n</sub>) on the haplotype library for chromosome 1 in the PE DH-lines.</div><div><br></div><div>Table S4: Influence of using the extended-block-identification on the haplotype library in dependency of the parameter t of the extended-block-identification-step for chromosome 1 in the PE DH-lines.</div><div><br></div><div>Figure S1: Dataset for the toy example used in File S3.</div><div><br></div><div>Figure S2: Comparison of the block structure and an bifurcation plot (Sabeti et al., 2002, Gautier and Vitalis, 2012) according SNP 10'000 on chromosome 1 in the KE DH-lines. </div><div><br></div><div>Figure S3: Comparision of the block structure for MCMB=1'000 (A), MCMB=5'000 (B), MCMB=20'000 (C) for the first 20'000 SNPs of chromosome 1 in the KE DH-lines.</div>