Supplemental Material for Miller et al., 2019

Figure S1. Maximization of collinearity in the final consensus map from male and female informative markers.

Figure S2. Linkage map assignment heat map of recombination fractions and LOD scores for scaffolds with sufficient markers for mapping.

Figure S3. LGs that differed between the two sex-specific maps and the order and orientation of the consensus map (ALLMAPs) scaffolds in closely related platyfish and medaka.

Figure S4. Platyfish and medaka dot-plots for each killifish LG.

Figure S5. Zebrafish ortholog dot-plots.

Figure S6. Dot plots for each human (right, 1-23) and spotted gar (left, 1-29) chromosome.

Figure S7. Circos plots of fusions and duplicated chromosomes.

File S1. - BARCODES

File S2. - CUSTOM PERL SCRIPTS

File S3. - CUSTOM R SCRIPTS

File S4. - ADDRESS FOR GFFs ALL TAXA

File S5. - MICROSAT MAP TABLE

File S6. – CIRCOS HOMOLOGY