Supplemental Material for Jiang, Schmidt, and Reif, 2018.

Figure S1 shows the prediction accuracies of GBLUP, EGBLUP, LEGBLUP and HGBLUP for simulated traits with heritability 0.5 and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 4:3. <br><br>Figure S2 shows the prediction accuracies of the four models for simulated traits with heritability 0.7 and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 3:1. <br><br>Table S1 provides the prediction accuracies of the four models for the 26 agronomic traits in the rice data set. <br><br>File S1 contains the R code used to generate the data for the simulation study. <br><br>File S2 and S3 contain sample genomic and physical map data sets for running the code.