Supplemental Material for Jiang, Schmidt, and Reif, 2018.

Figure S1 shows the prediction accuracies of GBLUP, EGBLUP, LEGBLUP and HGBLUP for simulated traits with heritability 0.5 and σ2a2aa = 4:3.

Figure S2 shows the prediction accuracies of the four models for simulated traits with heritability 0.7 and σ2a2aa = 3:1.

Table S1 provides the prediction accuracies of the four models for the 26 agronomic traits in the rice data set.

File S1 contains the R code used to generate the data for the simulation study.

File S2 and S3 contain sample genomic and physical map data sets for running the code.