Supplemental Material for Cokus et al., 2019
datasetposted on 20.08.2019 by Shawn J. Cokus, Maricruz De La Torre, Eric F. Medina, Jeffrey P. Rasmussen, Joselyn Ramirez-Gutierrez, Alvaro Sagasti, Fang Wang
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
File S1 contains supplemental methods. File S2 contains comprehensive heatmaps of Gene Ontology enrichments (retaining all rows and columns containing any p-value ≤ 0.0001), extending Figure 4. File S3 contains a comparison of keratin genes and chromosomal locations between our findings and (Krushna Padhi et al. 2006). File S4 contains InterPro domain hit summaries used in the compilation of zebrafish type I and II keratins. File S5 contains comprehensive heatmaps of expressed genes (those with normalized transformed [log2-scale] counts ≥ 2.5 [i.e., ≥ ~5.7 in linear scale] in at least one condition) that encode cell surface receptors, transcription factors, and actin-binding proteins, extending Figure 5B–D. Figure S1 contains a phylogenetic tree of keratin and intermediate filament genes in zebrafish. Figure S2 contains gene expression plots (in similar style as Figure 2A) for all type I and II keratin zebrafish genes.