Supplemental Material for Busche et al., 2019
File S1. Per chromosome read coverage distribution of Dwarf Cavendish reads.
File S2. Comparison of SNVs in the duplicated segment on the long arm of chromosome 2 to all other SNVs in the genome. The higher read coverage at variants indicates a duplication of this region.
File S3. List of public genomic banana sequence read samples used for comparison against Dwarf Cavendish based on the DH Pahang reference.
File S4. Coverage plots of public genomic banana sequence read samples (File
S1) for comparison against Dwarf Cavendish based on the DH Pahang reference.
Samples are: Musa acuminata, Musa
acuminata AYP_BOSN_r1, Musa acuminata ssp. banksii, Musa acuminata ssp. burmannica, Musa acuminata Cavendish BaXiJiao, Musa
acuminata Gros Michel, Musa acuminata ssp. malaccensis, Musa
acuminata Sucrier (Pisang Mas), Musa
acuminata Sucrier (Pisang Mas 1998-2307), Musa acuminata ssp. zebrina
(blood banana), Musa balbisiana
Pisang Klutuk Wulung, Musa itinerans, Musa schizocarpa.
File S5. List of selected high impact variants between Dwarf Cavendish and DH Pahang with resulting effects predicted by SnpEff.