Supplemental Material for Vendramin et al., 2020 VendraminStefania HuangJi CrispPeter A. MadzimaThelma F. McGinnisKaren M. 2020 p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.5px Helvetica; color: #141414} span.s1 {font: 12.0px Helvetica; color: #000000} <p>Figure S1: Rab17 RT-qPCR</p> <p>Figure S2: MDS clustering</p><p>Figure S3: DNG RT-qPCR</p><p>Figure S4: Promoter methylation in <i>Mop1</i> WT and <i>mop1-1 </i>mutant for DEGs and non-DEGs</p><p>Figure S5: Heatmap (Log2 FC) of TF Network DEGs</p><p> p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.5px Helvetica; color: #141414} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} span.s1 {font: 12.0px Helvetica; color: #000000} span.s2 {color: #000000} </p><p>Table S1: DEGs no. for DE analysis using different biological replicates no.</p> <p>Table S2: Maize protein phosphatases class A (PP2C-A)</p> <p>Table S3: Genes differentially expressed in <i>mop1-1 </i>mutant seedling & SAM</p> <p>Table S4: Number of GO terms found for DEGs in four groups</p> <p>Table S5: Number of genes found in each model group and subgroup</p> <p>Table S6: High-confidence miRNAs</p> <p>File S1: Groups I-VII log2FC</p> <p>File S2: GO term enrichment per DEG group</p> <p>File S3: Homologous TFs</p> <p>File S4: Tiers and Downstream genes</p> <p>File S5: Group model parameters per gene</p> <p>File S6: Genome-wide siRNA changes in <i>mop1-1</i> mutant</p> <p>File S7: TGS2 target genes</p> <p>File S8: SeqCap DNA methylation ratios in all sequence contexts</p> <p>File S9: Promoter DNA methylation for<i> Mop1</i> wildtype ABA-responsive DEGs</p> <p>File S10: MOP1-ABA targets with a loss of siRNA and DNA methylation at ABRE sites</p><br><p></p>