%0 Generic
%A Pook, Torsten
%A Schlather, Martin
%A de los Campos, Gustavo
%A Mayer, Manfred
%A Schoen, Chris Carolin
%A Simianer, Henner
%D 2019
%T Supplemental Material for Pook et al., 2019
%U https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Pook_et_al_2019/7862525
%R 10.25386/genetics.7862525.v1
%2 https://gsajournals.figshare.com/ndownloader/files/14639969
%2 https://gsajournals.figshare.com/ndownloader/files/14640053
%2 https://gsajournals.figshare.com/ndownloader/files/14639972
%2 https://gsajournals.figshare.com/ndownloader/files/14639954
%2 https://gsajournals.figshare.com/ndownloader/files/14639975
%2 https://gsajournals.figshare.com/ndownloader/files/14639957
%2 https://gsajournals.figshare.com/ndownloader/files/14639978
%2 https://gsajournals.figshare.com/ndownloader/files/14639960
%2 https://gsajournals.figshare.com/ndownloader/files/14639963
%2 https://gsajournals.figshare.com/ndownloader/files/14639966
%K haplotype blocks
%K haplotype libraries
%K population genetics
%K selection signatures
%K R-package
%K identity-by-descent
%K Quantitative Genetics (incl. Disease and Trait Mapping Genetics)
%X
File S1: Additional method section on setting a target-coverage.
File S2: Additional method section on the graphical representation of haplotype blocks.
File S3: Additional method section - toy example for calculation of bEHH.
Table S1: Proportion of variance explained between the full SNP-dataset (X), a SNP-subset (Xs) and the block dataset (Z). For comparability the number of parameters in Xs and Z were chosen equally using traditionally heritability estimation as in de los Campos (2017).
Table S2: Influence of the window size on the haplotype library for chromosome 1 in the PE DH-lines.
Table S3: Influence of the weighting of block length (wl) and number of haplotypes (wn) on the haplotype library for chromosome 1 in the PE DH-lines.
Table S4: Influence of using the extended-block-identification on the haplotype library in dependency of the parameter t of the extended-block-identification-step for chromosome 1 in the PE DH-lines.
Figure S1: Dataset for the toy example used in File S3.
Figure S2: Comparison of the block structure and an bifurcation plot (Sabeti et al., 2002, Gautier and Vitalis, 2012) according SNP 10'000 on chromosome 1 in the KE DH-lines.
Figure S3: Comparision of the block structure for MCMB=1'000 (A), MCMB=5'000 (B), MCMB=20'000 (C) for the first 20'000 SNPs of chromosome 1 in the KE DH-lines.
%I GSA Journals