%0 Generic %A Pook, Torsten %A Schlather, Martin %A de los Campos, Gustavo %A Mayer, Manfred %A Schoen, Chris Carolin %A Simianer, Henner %D 2019 %T Supplemental Material for Pook et al., 2019 %U https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Pook_et_al_2019/7862525 %R 10.25386/genetics.7862525.v1 %2 https://gsajournals.figshare.com/ndownloader/files/14639969 %2 https://gsajournals.figshare.com/ndownloader/files/14640053 %2 https://gsajournals.figshare.com/ndownloader/files/14639972 %2 https://gsajournals.figshare.com/ndownloader/files/14639954 %2 https://gsajournals.figshare.com/ndownloader/files/14639975 %2 https://gsajournals.figshare.com/ndownloader/files/14639957 %2 https://gsajournals.figshare.com/ndownloader/files/14639978 %2 https://gsajournals.figshare.com/ndownloader/files/14639960 %2 https://gsajournals.figshare.com/ndownloader/files/14639963 %2 https://gsajournals.figshare.com/ndownloader/files/14639966 %K haplotype blocks %K haplotype libraries %K population genetics %K selection signatures %K R-package %K identity-by-descent %K Quantitative Genetics (incl. Disease and Trait Mapping Genetics) %X
File S1: Additional method section on setting a target-coverage.

File S2: Additional method section on the graphical representation of haplotype blocks.

File S3: Additional method section - toy example for calculation of bEHH.

Table S1: Proportion of variance explained between the full SNP-dataset (X), a SNP-subset (Xs) and the block dataset (Z). For comparability the number of parameters in Xs and Z were chosen equally using traditionally heritability estimation as in de los Campos (2017).

Table S2: Influence of the window size on the haplotype library for chromosome 1 in the PE DH-lines.

Table S3: Influence of the weighting of block length (wl) and number of haplotypes (wn) on the haplotype library for chromosome 1 in the PE DH-lines.

Table S4: Influence of using the extended-block-identification on the haplotype library in dependency of the parameter t of the extended-block-identification-step for chromosome 1 in the PE DH-lines.

Figure S1: Dataset for the toy example used in File S3.

Figure S2: Comparison of the block structure and an bifurcation plot (Sabeti et al., 2002, Gautier and Vitalis, 2012) according SNP 10'000 on chromosome 1 in the KE DH-lines.

Figure S3: Comparision of the block structure for MCMB=1'000 (A), MCMB=5'000 (B), MCMB=20'000 (C) for the first 20'000 SNPs of chromosome 1 in the KE DH-lines.
%I GSA Journals