10.25386/genetics.7505762.v3
Mingzi Xu
Mingzi
Xu
Kerry L. Shaw
Kerry L.
Shaw
Supplemental material for Xu and Shaw, 2019
GSA Journals
2020
Interspecific variation
behavioral barrier
genetic architecture
cyclic nucleotide-gated ion channel
Laupala
speciation
Genetics
2020-02-28 14:55:12
Dataset
https://gsajournals.figshare.com/articles/dataset/Supplemental_material_for_Xu_and_Shaw_2019/7505762
File
S1 contains additional method details and supplementary results; Table S1
contains information about conserved domains in the 11 <i>Drosophila
melanogaster</i> candidate genes for variation in interpulse interval of
courtship song; Table S2 contains summary statistics of the linkage maps; Table
S3 contains results from MQM on linkage groups other than LG5; Table S4 contains
frequency distributions of the F<sub>2</sub> male pulse rates and chi-squared
test results for Mendelian segregation ratios in 4C and 4E families; Table S5
shows results of functional annotation of the 66 predicted genes on the five
focal scaffolds within and flanking the 1.5-LOD (same as 5-LOD) support confidence interval of
the major QTL peak in 4C.9; Table S6 contains information about conserved
domains in CNG and HCN channels used for protein tree construction; Table S7
contains descriptions of top blast hits and the E-values for unannotated genes
in Table S5 from a blast using relaxed E-value cutoff of 100; Figure S1 shows
the phenotypic distribution in NIL4B; Figure S2 shows homology and synteny of
linkage groups among 6 F2 families; Figure S3 shows the linkage maps of A)
NIL4C and NIL4E and B) NIL4B; Figure S4 shows the LOD profile of MQM and SIM
models in NIL4B; Figure S5 shows synteny between the linkage map of 18 markers
showing potential double recombination patterns on linkage group 5 and the
linkage map for LG5 used for QTL mapping in 4C.9; Figure S6 shows alignment
between protein sequence of the termite <i>Zootermopsis nevadensis</i>
cyclic nucleotide-gated olfactory channel-like protein and the putative <i>Laupala
Cngl </i>homolog.