Supplementary Material for Sams and Boyko, 2018
Aaron J. Sams
Adam R. Boyko
10.25387/g3.7330151.v1
https://gsajournals.figshare.com/articles/dataset/Supplementary_Material_for_Sams_and_Boyko_2018/7330151
supplemental_file_list.pdf-- contains a list of all supplemental files. <div><br><div>supplemental_materials.pdf-- contains supplemental figures, tables, and references. </div><div><br></div><div>at_risk_id_key.tsv-- contains phenotype information for at-risk dogs in this study. </div><div><br></div><div>breed_id_key.tsv-- contains breed and sex information for breed dogs in this study. </div><div><br></div><div>at_risk.ped.gz contains genotype data (gzipped) in PLINK .ped format for at-risk dogs in this study.</div><div><br></div><div>at_risk.map contains marker location information in PLINK .map format for at-risk dogs in this study. </div><div><br></div><div><div>breeds.ped.gz contains genotype data (gzipped) in PLINK .ped format for dogs in the breed analysis in this study.</div><div><br></div><div>breeds.map contains marker location information in PLINK .map format for dogs in the breed analysis in this study. </div></div><div> </div><div>postprocess_germline.py contains a python (v2) script for postprocessing germline homozygosity tracts generated using the flags presented in Materials & Methods. </div></div>
2018-11-14 15:47:59
inbreeding
inbreeding depression
identity by descent
runs of homozygosity
canid
dog
Bioinformatics
Computational Biology
Genomics
Population, Ecological and Evolutionary Genetics