10.25387/g3.5986933.v1
Yong Jiang
Yong
Jiang
Renate H Schmidt
Renate H
Schmidt
Jochen C. Reif
Jochen
C. Reif
Supplemental Material for Jiang, Schmidt, and Reif, 2018.
GSA Journals
2018
haplotype
epistasis
local epistatic effect
genome-wide prediction
Quantitative Genetics (incl. Disease and Trait Mapping Genetics)
Biostatistics
Genetics
Crop and Pasture Improvement (Selection and Breeding)
2018-03-15 20:47:40
Dataset
https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Jiang_Schmidt_and_Reif_2018_/5986933
Figure S1 shows the prediction accuracies of
GBLUP, EGBLUP, LEGBLUP and HGBLUP for simulated traits with heritability 0.5
and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 4:3. <br><br>Figure S2 shows the prediction
accuracies of the four models for simulated traits with heritability 0.7 and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 3:1.
<br><br>Table S1 provides the prediction
accuracies of the four models for the 26 agronomic traits in the rice data set.
<br><br>File S1 contains the R code used to generate the data for the simulation study.
<br><br>File S2 and S3 contain sample genomic and physical map data sets for running
the code.