10.25387/g3.5986933.v1 Yong Jiang Yong Jiang Renate H Schmidt Renate H Schmidt Jochen C. Reif Jochen C. Reif Supplemental Material for Jiang, Schmidt, and Reif, 2018. GSA Journals 2018 haplotype epistasis local epistatic effect genome-wide prediction Quantitative Genetics (incl. Disease and Trait Mapping Genetics) Biostatistics Genetics Crop and Pasture Improvement (Selection and Breeding) 2018-03-15 20:47:40 Dataset https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Jiang_Schmidt_and_Reif_2018_/5986933 Figure S1 shows the prediction accuracies of GBLUP, EGBLUP, LEGBLUP and HGBLUP for simulated traits with heritability 0.5 and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 4:3. <br><br>Figure S2 shows the prediction accuracies of the four models for simulated traits with heritability 0.7 and σ<sup>2</sup><sub>a</sub>/σ<sup>2</sup><sub>aa</sub> = 3:1. <br><br>Table S1 provides the prediction accuracies of the four models for the 26 agronomic traits in the rice data set. <br><br>File S1 contains the R code used to generate the data for the simulation study. <br><br>File S2 and S3 contain sample genomic and physical map data sets for running the code.